0.022287
0.000000
0.000000
0.000000
0.017775
0.000000
0.000000
0.000000
0.009730
0.00000
0.00000
0.00000
Shakespeare, W.
Yang, M.
Bohacek, R.
Cerasoli, F.
Stebbis, K.
Sundaramoorthi, R.
Vu, C.
Pradeepan, S.
Metcalf, C.
Haraldson, C.
Merry, T.
Dalgarno, D.
Narula, S.
Hatada, M.
Lu, X.
Van Schravendijk, M.R.
Adams, S.
Violette, S.
Smith, J.
Guan, W.
Bartlett, C.
Herson, J.
Iuliucci, J.
Weigele, M.
Sawyer, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
44.870
56.260
102.770
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C30 H41 N3 O10 P2
665.608
{4-[2-ACETYLAMINO-2-(3-CARBAMOYL-2-CYCLOHEXYLMETHOXY-6,7,8,9-TETRAHYDRO-5H-BENZOCYCLOHEPTEN-5YLCARBAMOYL)-ETHYL]-2-PHOSPHONO-PHENYL}-PHOSPHONIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
S
C
N
75
N
N
N
76
N
C
N
77
S
C
N
78
N
N
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
C
Y
83
N
C
Y
84
N
C
Y
85
N
C
N
86
N
P
N
87
N
O
N
88
N
O
N
89
N
O
Y
90
N
C
N
91
N
P
N
92
N
O
N
93
N
O
N
94
N
O
Y
95
N
C
Y
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
C
Y
102
N
C
Y
103
N
C
Y
104
N
C
N
105
N
O
N
106
N
C
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
C
Y
113
N
C
Y
114
N
C
Y
115
N
C
N
116
N
C
N
117
N
N
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
R
C
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
S
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
O
N
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
Y
228
N
C
Y
229
N
N
Y
230
N
C
Y
231
N
C
Y
232
N
N
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
S
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
N
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
R
C
N
375
N
O
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
N
N
388
S
C
N
389
N
C
N
390
N
O
N
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
N
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
N
N
439
S
C
N
440
N
C
N
441
N
O
N
442
N
C
N
443
N
C
N
444
N
C
N
445
N
O
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
Y
91
N
doub
Y
92
N
sing
Y
93
N
sing
N
94
N
sing
N
95
N
sing
Y
96
N
doub
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
Y
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
Y
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
Y
124
N
doub
Y
125
N
sing
Y
126
N
sing
N
127
N
sing
N
128
N
sing
Y
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
Y
151
N
sing
N
152
N
sing
Y
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
Y
229
N
sing
Y
230
N
doub
Y
231
N
doub
N
232
N
sing
Y
233
N
sing
N
234
N
sing
Y
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
Y
318
N
doub
Y
319
N
sing
Y
320
N
sing
N
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
Y
387
N
doub
Y
388
N
sing
Y
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
sing
Y
396
N
doub
N
397
N
sing
Y
398
N
doub
N
399
N
sing
Y
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
doub
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
Y
415
N
doub
Y
416
N
sing
Y
417
N
sing
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
doub
N
422
N
sing
Y
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
doub
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
97
9373
9378
10.1073/pnas.97.17.9373
10944210
Structure-based design of an osteoclast-selective, nonpeptide src homology 2 inhibitor with in vivo antiresorptive activity.
2000
10.2210/pdb1fbz/pdb
pdb_00001fbz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
113.0
1
IMAGE PLATE
1998-10-29
RIGAKU RAXIS II
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
11888.279
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE LCK
2.7.1.112
SH2 DOMAIN
2
man
polymer
665.608
{4-[2-ACETYLAMINO-2-(3-CARBAMOYL-2-CYCLOHEXYLMETHOXY-6,7,8,9-TETRAHYDRO-5H-BENZOCYCLOHEPTEN-5YLCARBAMOYL)-ETHYL]-2-PHOSPHONO-PHENYL}-PHOSPHONIC ACID
2
syn
non-polymer
18.015
water
40
nat
water
no
no
EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGL
HELVRHYTNASDGLCTRLSRPCQT
EPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFCLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGL
HELVRHYTNASDGLCTRLSRPCQT
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
2.73
54.91
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-08-23
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-07-17
REL
CC1
{4-[2-ACETYLAMINO-2-(3-CARBAMOYL-2-CYCLOHEXYLMETHOXY-6,7,8,9-TETRAHYDRO-5H-BENZOCYCLOHEPTEN-5YLCARBAMOYL)-ETHYL]-2-PHOSPHONO-PHENYL}-PHOSPHONIC ACID
HOH
water
CC1
150
2
CC1
CC1
150
A
CC1
350
2
CC1
CC1
350
B
HOH
3
3
HOH
HOH
151
A
HOH
4
3
HOH
HOH
152
A
HOH
8
3
HOH
HOH
153
A
HOH
11
3
HOH
HOH
154
A
HOH
15
3
HOH
HOH
155
A
HOH
18
3
HOH
HOH
156
A
HOH
24
3
HOH
HOH
157
A
HOH
27
3
HOH
HOH
158
A
HOH
30
3
HOH
HOH
159
A
HOH
31
3
HOH
HOH
160
A
HOH
36
3
HOH
HOH
161
A
HOH
37
3
HOH
HOH
162
A
HOH
40
3
HOH
HOH
163
A
HOH
42
3
HOH
HOH
164
A
HOH
47
3
HOH
HOH
165
A
HOH
49
3
HOH
HOH
166
A
HOH
50
3
HOH
HOH
167
A
HOH
53
3
HOH
HOH
168
A
HOH
58
3
HOH
HOH
169
A
HOH
70
3
HOH
HOH
170
A
HOH
72
3
HOH
HOH
171
A
HOH
73
3
HOH
HOH
172
A
HOH
75
3
HOH
HOH
173
A
HOH
7
3
HOH
HOH
7
B
HOH
17
3
HOH
HOH
17
B
HOH
21
3
HOH
HOH
21
B
HOH
22
3
HOH
HOH
22
B
HOH
26
3
HOH
HOH
26
B
HOH
32
3
HOH
HOH
32
B
HOH
35
3
HOH
HOH
35
B
HOH
38
3
HOH
HOH
38
B
HOH
45
3
HOH
HOH
45
B
HOH
48
3
HOH
HOH
48
B
HOH
52
3
HOH
HOH
52
B
HOH
61
3
HOH
HOH
61
B
HOH
65
3
HOH
HOH
65
B
HOH
68
3
HOH
HOH
68
B
HOH
69
3
HOH
HOH
69
B
HOH
71
3
HOH
HOH
71
B
HOH
79
3
HOH
HOH
79
B
GLU
1
n
1
GLU
1
A
PRO
2
n
2
PRO
2
A
GLU
3
n
3
GLU
3
A
PRO
4
n
4
PRO
4
A
TRP
5
n
5
TRP
5
A
PHE
6
n
6
PHE
6
A
PHE
7
n
7
PHE
7
A
LYS
8
n
8
LYS
8
A
ASN
9
n
9
ASN
9
A
LEU
10
n
10
LEU
10
A
SER
11
n
11
SER
11
A
ARG
12
n
12
ARG
12
A
LYS
13
n
13
LYS
13
A
ASP
14
n
14
ASP
14
A
ALA
15
n
15
ALA
15
A
GLU
16
n
16
GLU
16
A
ARG
17
n
17
ARG
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LEU
20
n
20
LEU
20
A
ALA
21
n
21
ALA
21
A
PRO
22
n
22
PRO
22
A
GLY
23
n
23
GLY
23
A
ASN
24
n
24
ASN
24
A
THR
25
n
25
THR
25
A
HIS
26
n
26
HIS
26
A
GLY
27
n
27
GLY
27
A
SER
28
n
28
SER
28
A
PHE
29
n
29
PHE
29
A
LEU
30
n
30
LEU
30
A
ILE
31
n
31
ILE
31
A
ARG
32
n
32
ARG
32
A
GLU
33
n
33
GLU
33
A
SER
34
n
34
SER
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
THR
37
n
37
THR
37
A
ALA
38
n
38
ALA
38
A
GLY
39
n
39
GLY
39
A
SER
40
n
40
SER
40
A
PHE
41
n
41
PHE
41
A
CYS
42
n
42
CYS
42
A
LEU
43
n
43
LEU
43
A
SER
44
n
44
SER
44
A
VAL
45
n
45
VAL
45
A
ARG
46
n
46
ARG
46
A
ASP
47
n
47
ASP
47
A
PHE
48
n
48
PHE
48
A
ASP
49
n
49
ASP
49
A
GLN
50
n
50
GLN
50
A
ASN
51
n
51
ASN
51
A
GLN
52
n
52
GLN
52
A
GLY
53
n
53
GLY
53
A
GLU
54
n
54
GLU
54
A
VAL
55
n
55
VAL
55
A
VAL
56
n
56
VAL
56
A
LYS
57
n
57
LYS
57
A
HIS
58
n
58
HIS
58
A
TYR
59
n
59
TYR
59
A
LYS
60
n
60
LYS
60
A
ILE
61
n
61
ILE
61
A
ARG
62
n
62
ARG
62
A
ASN
63
n
63
ASN
63
A
LEU
64
n
64
LEU
64
A
ASP
65
n
65
ASP
65
A
ASN
66
n
66
ASN
66
A
GLY
67
n
67
GLY
67
A
GLY
68
n
68
GLY
68
A
PHE
69
n
69
PHE
69
A
TYR
70
n
70
TYR
70
A
ILE
71
n
71
ILE
71
A
SER
72
n
72
SER
72
A
PRO
73
n
73
PRO
73
A
ARG
74
n
74
ARG
74
A
ILE
75
n
75
ILE
75
A
THR
76
n
76
THR
76
A
PHE
77
n
77
PHE
77
A
PRO
78
n
78
PRO
78
A
GLY
79
n
79
GLY
79
A
LEU
80
n
80
LEU
80
A
HIS
81
n
81
HIS
81
A
GLU
82
n
82
GLU
82
A
LEU
83
n
83
LEU
83
A
VAL
84
n
84
VAL
84
A
ARG
85
n
85
ARG
85
A
HIS
86
n
86
HIS
86
A
TYR
87
n
87
TYR
87
A
THR
88
n
88
THR
88
A
ASN
89
n
89
ASN
89
A
ALA
90
n
90
ALA
90
A
SER
91
n
91
SER
91
A
ASP
92
n
92
ASP
92
A
GLY
93
n
93
GLY
93
A
LEU
94
n
94
LEU
94
A
CYS
95
n
95
CYS
95
A
THR
96
n
96
THR
96
A
ARG
97
n
97
ARG
97
A
LEU
98
n
98
LEU
98
A
SER
99
n
99
SER
99
A
ARG
100
n
100
ARG
100
A
PRO
101
n
101
PRO
101
A
CYS
102
n
102
CYS
102
A
GLN
103
n
103
GLN
103
A
THR
104
n
104
THR
104
A
GLU
201
n
1
GLU
201
B
PRO
202
n
2
PRO
202
B
GLU
203
n
3
GLU
203
B
PRO
204
n
4
PRO
204
B
TRP
205
n
5
TRP
205
B
PHE
206
n
6
PHE
206
B
PHE
207
n
7
PHE
207
B
LYS
208
n
8
LYS
208
B
ASN
209
n
9
ASN
209
B
LEU
210
n
10
LEU
210
B
SER
211
n
11
SER
211
B
ARG
212
n
12
ARG
212
B
LYS
213
n
13
LYS
213
B
ASP
214
n
14
ASP
214
B
ALA
215
n
15
ALA
215
B
GLU
216
n
16
GLU
216
B
ARG
217
n
17
ARG
217
B
GLN
218
n
18
GLN
218
B
LEU
219
n
19
LEU
219
B
LEU
220
n
20
LEU
220
B
ALA
221
n
21
ALA
221
B
PRO
222
n
22
PRO
222
B
GLY
223
n
23
GLY
223
B
ASN
224
n
24
ASN
224
B
THR
225
n
25
THR
225
B
HIS
226
n
26
HIS
226
B
GLY
227
n
27
GLY
227
B
SER
228
n
28
SER
228
B
PHE
229
n
29
PHE
229
B
LEU
230
n
30
LEU
230
B
ILE
231
n
31
ILE
231
B
ARG
232
n
32
ARG
232
B
GLU
233
n
33
GLU
233
B
SER
234
n
34
SER
234
B
GLU
235
n
35
GLU
235
B
SER
236
n
36
SER
236
B
THR
237
n
37
THR
237
B
ALA
238
n
38
ALA
238
B
GLY
239
n
39
GLY
239
B
SER
240
n
40
SER
240
B
PHE
241
n
41
PHE
241
B
CYS
242
n
42
CYS
242
B
LEU
243
n
43
LEU
243
B
SER
244
n
44
SER
244
B
VAL
245
n
45
VAL
245
B
ARG
246
n
46
ARG
246
B
ASP
247
n
47
ASP
247
B
PHE
248
n
48
PHE
248
B
ASP
249
n
49
ASP
249
B
GLN
250
n
50
GLN
250
B
ASN
251
n
51
ASN
251
B
GLN
252
n
52
GLN
252
B
GLY
253
n
53
GLY
253
B
GLU
254
n
54
GLU
254
B
VAL
255
n
55
VAL
255
B
VAL
256
n
56
VAL
256
B
LYS
257
n
57
LYS
257
B
HIS
258
n
58
HIS
258
B
TYR
259
n
59
TYR
259
B
LYS
260
n
60
LYS
260
B
ILE
261
n
61
ILE
261
B
ARG
262
n
62
ARG
262
B
ASN
263
n
63
ASN
263
B
LEU
264
n
64
LEU
264
B
ASP
265
n
65
ASP
265
B
ASN
266
n
66
ASN
266
B
GLY
267
n
67
GLY
267
B
GLY
268
n
68
GLY
268
B
PHE
269
n
69
PHE
269
B
TYR
270
n
70
TYR
270
B
ILE
271
n
71
ILE
271
B
SER
272
n
72
SER
272
B
PRO
273
n
73
PRO
273
B
ARG
274
n
74
ARG
274
B
ILE
275
n
75
ILE
275
B
THR
276
n
76
THR
276
B
PHE
277
n
77
PHE
277
B
PRO
278
n
78
PRO
278
B
GLY
279
n
79
GLY
279
B
LEU
280
n
80
LEU
280
B
HIS
281
n
81
HIS
281
B
GLU
282
n
82
GLU
282
B
LEU
283
n
83
LEU
283
B
VAL
284
n
84
VAL
284
B
ARG
285
n
85
ARG
285
B
HIS
286
n
86
HIS
286
B
TYR
287
n
87
TYR
287
B
THR
288
n
88
THR
288
B
ASN
289
n
89
ASN
289
B
ALA
290
n
90
ALA
290
B
SER
291
n
91
SER
291
B
ASP
292
n
92
ASP
292
B
GLY
293
n
93
GLY
293
B
LEU
294
n
94
LEU
294
B
CYS
295
n
95
CYS
295
B
THR
296
n
96
THR
296
B
ARG
297
n
97
ARG
297
B
LEU
298
n
98
LEU
298
B
SER
299
n
99
SER
299
B
ARG
300
n
100
ARG
300
B
PRO
301
n
101
PRO
301
B
CYS
302
n
102
CYS
302
B
GLN
303
n
103
GLN
303
B
THR
304
n
104
THR
304
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ARG
32
A
O
ARG
32
A
N
CYS
42
A
N
CYS
42
A
O
ASP
47
A
O
ASP
47
A
N
VAL
55
A
N
VAL
55
A
N
ARG
62
A
N
ARG
62
A
O
TYR
70
A
O
TYR
70
B
N
PHE
207
B
N
PHE
7
B
O
ILE
231
B
O
ILE
31
B
O
ARG
232
B
O
ARG
32
B
N
CYS
242
B
N
CYS
42
B
N
VAL
245
B
N
VAL
45
B
O
LYS
257
B
O
LYS
57
B
N
ARG
262
B
N
ARG
62
B
O
TYR
270
B
O
TYR
70
1
A
CG
GLU
1
A
CG
GLU
1
1
Y
1
A
CD
GLU
1
A
CD
GLU
1
1
Y
1
A
OE1
GLU
1
A
OE1
GLU
1
1
Y
1
A
OE2
GLU
1
A
OE2
GLU
1
1
Y
1
B
CG
GLU
201
B
CG
GLU
1
1
Y
1
B
CD
GLU
201
B
CD
GLU
1
1
Y
1
B
OE1
GLU
201
B
OE1
GLU
1
1
Y
1
B
OE2
GLU
201
B
OE2
GLU
1
1
Y
1
B
B
HG1
HH21
THR
ARG
225
300
1.16
1
A
B
HE22
H
GLN
ASP
18
265
1.22
1_555
4_566
1
A
PRO
22
-39.10
146.59
1
A
THR
25
-160.20
-162.06
1
A
GLU
35
-90.83
-67.33
1
A
THR
37
-118.76
-164.70
1
A
GLN
50
-28.55
-38.44
1
A
ASN
51
-70.08
-79.30
1
A
TYR
70
-179.15
138.10
1
A
PRO
73
-62.27
1.77
1
A
SER
99
-58.00
-73.59
1
B
LYS
208
1.17
-84.37
1
B
THR
237
-170.06
-179.58
1
B
ASP
247
-148.95
-156.24
1
B
GLN
252
-83.76
-104.33
1
B
ASN
263
-105.64
-168.41
1
B
ALA
290
-178.64
132.57
1
B
SER
299
-69.53
-101.72
0.36
0.23
0.23
2.40
15.00
9476
10.000
88.3
1
2.000
2.40
15.00
120
2286
90
0
2076
2.4
15.0
1FBZ
9476
2.0
0.09
1
6
88.3
data reduction
DENZO
data scaling
SCALEPACK
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
Structure-based design of a novel, osteoclast-selective, nonpeptide Src SH2 inhibitor with in vivo anti-resorptive activity
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
SER
11
A
SER
11
HELX_P
A
LEU
20
A
LEU
20
1
1
10
A
GLY
79
A
GLY
79
HELX_P
A
ALA
90
A
ALA
90
1
2
12
B
SER
211
B
SER
11
HELX_P
B
ALA
221
B
ALA
21
1
3
11
B
GLY
279
B
GLY
79
HELX_P
B
ALA
290
B
ALA
90
1
4
12
TRANSFERASE
SH2 DOMAIN, NONPEPTIDE INHIBITOR, TRANSFERASE
LCK_HUMAN
UNP
1
P06239
123
226
1FBZ
1
104
P06239
A
1
1
104
123
226
1FBZ
201
304
P06239
B
1
1
104
1
SER
conflict
CYS
42
1FBZ
A
P06239
UNP
164
42
2
SER
conflict
CYS
242
1FBZ
B
P06239
UNP
164
42
4
5
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
29
A
PHE
29
A
GLU
33
A
GLU
33
A
PHE
41
A
PHE
41
A
ASP
47
A
ASP
47
A
VAL
55
A
VAL
55
A
ASN
63
A
ASN
63
A
PHE
69
A
PHE
69
A
TYR
70
A
TYR
70
B
PHE
206
B
PHE
6
B
PHE
207
B
PHE
7
B
PHE
229
B
PHE
29
B
GLU
233
B
GLU
33
B
PHE
241
B
PHE
41
B
ARG
246
B
ARG
46
B
VAL
256
B
VAL
56
B
ASN
263
B
ASN
63
B
PHE
269
B
PHE
69
B
TYR
270
B
TYR
70
BINDING SITE FOR RESIDUE CC1 A 150
A
CC1
150
Software
14
BINDING SITE FOR RESIDUE CC1 B 350
B
CC1
350
Software
15
A
ARG
12
A
ARG
12
14
1_555
A
ARG
32
A
ARG
32
14
1_555
A
GLU
35
A
GLU
35
14
1_555
A
SER
36
A
SER
36
14
1_555
A
HIS
58
A
HIS
58
14
1_555
A
TYR
59
A
TYR
59
14
1_555
A
LYS
60
A
LYS
60
14
1_555
A
ILE
71
A
ILE
71
14
1_555
A
SER
72
A
SER
72
14
1_555
A
GLY
93
A
GLY
93
14
1_555
B
ARG
217
B
ARG
17
14
3_645
B
ARG
285
B
ARG
85
14
2_564
B
HIS
286
B
HIS
86
14
2_564
B
ASN
289
B
ASN
89
14
2_564
A
GLU
1
A
GLU
1
15
4_466
B
ARG
212
B
ARG
12
15
1_555
B
ARG
232
B
ARG
32
15
1_555
B
SER
234
B
SER
34
15
1_555
B
GLU
235
B
GLU
35
15
1_555
B
SER
236
B
SER
36
15
1_555
B
CYS
242
B
CYS
42
15
1_555
B
HIS
258
B
HIS
58
15
1_555
B
TYR
259
B
TYR
59
15
1_555
B
LYS
260
B
LYS
60
15
1_555
B
ARG
262
B
ARG
62
15
1_555
B
SER
272
B
SER
72
15
1_555
B
ASP
292
B
ASP
92
15
1_555
B
GLY
293
B
GLY
93
15
1_555
B
LEU
294
B
LEU
94
15
1_555
19
P 21 21 21