.014164 .008178 0.000000 0.000000 .016356 0.000000 0.000000 0.000000 .006784 0.00000 0.00000 0.00000 THESE ATOMS WERE NOT FOUND IN THE ELECTRON DENSITY MAP. THEIR COORDINATES WERE GENERATED USING STEREOCHEMICAL CRITERIA RESIDUE PRO D 374 IS A CIS-PROLINE. Deisenhofer, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 70.600 70.600 147.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C6 H12 O6 180.156 beta-D-galactopyranose beta-D-galactose; D-galactose; galactose D-saccharide, beta linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C4 H9 N O2 103.120 UNKNOWN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 20 2361 2370 10.1021/bi00512a001 7236608 Crystallographic refinement and atomic models of a human Fc fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9- and 2.8-A resolution. 1981 GW Hoppe-Seyler's Z.Physiol.Chem. HSZPAZ 0905 0018-4888 359 975 Crystallization, Crystal Structure Analysis and Atomic Model of the Complex Formed by a Human Fc Fragment and Fragment B of Protein a from Staphylococcus Aureus 1978 MAN A 3 HAS WRONG CHIRALITY AT ATOM C1 FUC A 9 HAS WRONG CHIRALITY AT ATOM C1 FUC A 9 HAS WRONG CHIRALITY AT ATOM C5 1.000000 .577350 0.000000 0.000000 1.154701 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 6608.254 FRAGMENT B OF PROTEIN A COMPLEX 1 man polymer 25236.615 IMMUNOGLOBULIN FC 1 man polymer 1625.490 beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 96.063 SULFATE ION 1 syn non-polymer no no ADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQ(UNK)(UNK)K ADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQXXK C polypeptide(L) no no THTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRV VSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWE SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG THTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRV VSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWE SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n NCTC 8325 sample 93061 Staphylococcus aureus subsp. aureus human sample 9606 Homo sapiens 3.33 63.03 atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues pdbx_validate_chiral struct_asym struct_conn struct_ref_seq_dif struct_site struct_site_gen atom_site chem_comp pdbx_nonpoly_scheme pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop pdbx_struct_oper_list repository Initial release Carbohydrate remediation repository Remediation Version format compliance Source and taxonomy Version format compliance Advisory Atomic model Data collection Database references Derived calculations Other Structure summary Atomic model Data collection Derived calculations Structure summary 1 0 1981-10-02 1 1 2008-03-24 1 2 2011-07-13 2 0 2020-07-29 3 0 2020-12-16 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.occupancy _atom_site.type_symbol _chem_comp.name _chem_comp.type _pdbx_database_status.process_site _pdbx_struct_assembly_gen.asym_id_list _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_ref_seq_dif.details _atom_site.auth_seq_id _chem_comp.pdbx_synonyms _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly_gen.oper_expression D NAG 1 n A NAG 1 D NAG 3 n A NAG 2 D MAN 4 n A MAN 3 D MAN 5 n A MAN 4 D NAG 6 n A NAG 5 D GAL 7 n A GAL 6 D MAN 8 n A MAN 7 D NAG 9 n A NAG 8 D FUC 2 n A FUC 9 LFucpa a-L-fucopyranose a-L-Fucp Fuc DGalpb b-D-galactopyranose b-D-Galp Gal DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Y BNL 1981-05-21 REL oligosaccharide DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpa1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/4,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-2-1-2-1-3-4/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_g4-h1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}}}[(6+1)][a-D-6-deoxy-Altp]{}}} 3 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 3 O1 HO4 sing C1 O4 MAN NAG 3 2 3 O1 HO4 sing C1 O6 MAN MAN 4 3 3 O1 HO6 sing C1 O2 NAG MAN 5 4 3 O1 HO2 sing C1 O4 GAL NAG 6 5 3 O1 HO4 sing C1 O3 MAN MAN 7 3 3 O1 HO3 sing C1 O2 NAG MAN 8 7 3 O1 HO2 sing C1 O6 FUC NAG 9 1 3 O1 HO6 sing n n n n n n n n n SO4 SULFATE ION SO4 10 4 SO4 SO4 201 C n 1 120 C n 2 121 C n 3 122 C n 4 123 C PHE 124 n 5 PHE 124 C ASN 125 n 6 ASN 125 C LYS 126 n 7 LYS 126 C GLU 127 n 8 GLU 127 C GLN 128 n 9 GLN 128 C GLN 129 n 10 GLN 129 C ASN 130 n 11 ASN 130 C ALA 131 n 12 ALA 131 C PHE 132 n 13 PHE 132 C TYR 133 n 14 TYR 133 C GLU 134 n 15 GLU 134 C ILE 135 n 16 ILE 135 C LEU 136 n 17 LEU 136 C HIS 137 n 18 HIS 137 C LEU 138 n 19 LEU 138 C PRO 139 n 20 PRO 139 C ASN 140 n 21 ASN 140 C LEU 141 n 22 LEU 141 C ASN 142 n 23 ASN 142 C GLU 143 n 24 GLU 143 C GLU 144 n 25 GLU 144 C GLN 145 n 26 GLN 145 C ARG 146 n 27 ARG 146 C ASN 147 n 28 ASN 147 C GLY 148 n 29 GLY 148 C PHE 149 n 30 PHE 149 C ILE 150 n 31 ILE 150 C GLN 151 n 32 GLN 151 C SER 152 n 33 SER 152 C LEU 153 n 34 LEU 153 C LYS 154 n 35 LYS 154 C ASP 155 n 36 ASP 155 C ASP 156 n 37 ASP 156 C PRO 157 n 38 PRO 157 C SER 158 n 39 SER 158 C GLN 159 n 40 GLN 159 C SER 160 n 41 SER 160 C ALA 161 n 42 ALA 161 C ASN 162 n 43 ASN 162 C LEU 163 n 44 LEU 163 C LEU 164 n 45 LEU 164 C ALA 165 n 46 ALA 165 C GLU 166 n 47 GLU 166 C ALA 167 n 48 ALA 167 C n 49 168 C n 50 169 C n 51 170 C n 52 171 C n 53 172 C n 54 173 C n 55 174 C n 56 175 C n 57 176 C n 58 177 C n 1 223 D n 2 224 D n 3 225 D n 4 226 D n 5 227 D n 6 228 D n 7 229 D n 8 230 D n 9 231 D n 10 232 D n 11 233 D n 12 234 D n 13 235 D n 14 236 D n 15 237 D PRO 238 n 16 PRO 238 D SER 239 n 17 SER 239 D VAL 240 n 18 VAL 240 D PHE 241 n 19 PHE 241 D LEU 242 n 20 LEU 242 D PHE 243 n 21 PHE 243 D PRO 244 n 22 PRO 244 D PRO 245 n 23 PRO 245 D LYS 246 n 24 LYS 246 D PRO 247 n 25 PRO 247 D LYS 248 n 26 LYS 248 D ASP 249 n 27 ASP 249 D THR 250 n 28 THR 250 D LEU 251 n 29 LEU 251 D MET 252 n 30 MET 252 D ILE 253 n 31 ILE 253 D SER 254 n 32 SER 254 D ARG 255 n 33 ARG 255 D THR 256 n 34 THR 256 D PRO 257 n 35 PRO 257 D GLU 258 n 36 GLU 258 D VAL 259 n 37 VAL 259 D THR 260 n 38 THR 260 D CYS 261 n 39 CYS 261 D VAL 262 n 40 VAL 262 D VAL 263 n 41 VAL 263 D VAL 264 n 42 VAL 264 D ASP 265 n 43 ASP 265 D VAL 266 n 44 VAL 266 D SER 267 n 45 SER 267 D HIS 268 n 46 HIS 268 D GLU 269 n 47 GLU 269 D ASP 270 n 48 ASP 270 D PRO 271 n 49 PRO 271 D GLN 272 n 50 GLN 272 D VAL 273 n 51 VAL 273 D LYS 274 n 52 LYS 274 D PHE 275 n 53 PHE 275 D ASN 276 n 54 ASN 276 D TRP 277 n 55 TRP 277 D TYR 278 n 56 TYR 278 D VAL 279 n 57 VAL 279 D ASP 280 n 58 ASP 280 D GLY 281 n 59 GLY 281 D VAL 282 n 60 VAL 282 D GLN 283 n 61 GLN 283 D VAL 284 n 62 VAL 284 D HIS 285 n 63 HIS 285 D ASN 286 n 64 ASN 286 D ALA 287 n 65 ALA 287 D LYS 288 n 66 LYS 288 D THR 289 n 67 THR 289 D LYS 290 n 68 LYS 290 D PRO 291 n 69 PRO 291 D ARG 292 n 70 ARG 292 D GLU 293 n 71 GLU 293 D GLN 294 n 72 GLN 294 D GLN 295 n 73 GLN 295 D TYR 296 n 74 TYR 296 D ASN 297 n 75 ASN 297 D SER 298 n 76 SER 298 D THR 299 n 77 THR 299 D TYR 300 n 78 TYR 300 D ARG 301 n 79 ARG 301 D VAL 302 n 80 VAL 302 D VAL 303 n 81 VAL 303 D SER 304 n 82 SER 304 D VAL 305 n 83 VAL 305 D LEU 306 n 84 LEU 306 D THR 307 n 85 THR 307 D VAL 308 n 86 VAL 308 D LEU 309 n 87 LEU 309 D HIS 310 n 88 HIS 310 D GLN 311 n 89 GLN 311 D ASN 312 n 90 ASN 312 D TRP 313 n 91 TRP 313 D LEU 314 n 92 LEU 314 D ASP 315 n 93 ASP 315 D GLY 316 n 94 GLY 316 D LYS 317 n 95 LYS 317 D GLU 318 n 96 GLU 318 D TYR 319 n 97 TYR 319 D LYS 320 n 98 LYS 320 D CYS 321 n 99 CYS 321 D LYS 322 n 100 LYS 322 D VAL 323 n 101 VAL 323 D SER 324 n 102 SER 324 D ASN 325 n 103 ASN 325 D LYS 326 n 104 LYS 326 D ALA 327 n 105 ALA 327 D LEU 328 n 106 LEU 328 D PRO 329 n 107 PRO 329 D ALA 330 n 108 ALA 330 D PRO 331 n 109 PRO 331 D ILE 332 n 110 ILE 332 D GLU 333 n 111 GLU 333 D LYS 334 n 112 LYS 334 D THR 335 n 113 THR 335 D ILE 336 n 114 ILE 336 D SER 337 n 115 SER 337 D LYS 338 n 116 LYS 338 D ALA 339 n 117 ALA 339 D LYS 340 n 118 LYS 340 D GLY 341 n 119 GLY 341 D GLN 342 n 120 GLN 342 D PRO 343 n 121 PRO 343 D ARG 344 n 122 ARG 344 D GLU 345 n 123 GLU 345 D PRO 346 n 124 PRO 346 D GLN 347 n 125 GLN 347 D VAL 348 n 126 VAL 348 D TYR 349 n 127 TYR 349 D THR 350 n 128 THR 350 D LEU 351 n 129 LEU 351 D PRO 352 n 130 PRO 352 D PRO 353 n 131 PRO 353 D SER 354 n 132 SER 354 D ARG 355 n 133 ARG 355 D GLU 356 n 134 GLU 356 D GLU 357 n 135 GLU 357 D MET 358 n 136 MET 358 D THR 359 n 137 THR 359 D LYS 360 n 138 LYS 360 D ASN 361 n 139 ASN 361 D GLN 362 n 140 GLN 362 D VAL 363 n 141 VAL 363 D SER 364 n 142 SER 364 D LEU 365 n 143 LEU 365 D THR 366 n 144 THR 366 D CYS 367 n 145 CYS 367 D LEU 368 n 146 LEU 368 D VAL 369 n 147 VAL 369 D LYS 370 n 148 LYS 370 D GLY 371 n 149 GLY 371 D PHE 372 n 150 PHE 372 D TYR 373 n 151 TYR 373 D PRO 374 n 152 PRO 374 D SER 375 n 153 SER 375 D ASP 376 n 154 ASP 376 D ILE 377 n 155 ILE 377 D ALA 378 n 156 ALA 378 D VAL 379 n 157 VAL 379 D GLU 380 n 158 GLU 380 D TRP 381 n 159 TRP 381 D GLU 382 n 160 GLU 382 D SER 383 n 161 SER 383 D ASN 384 n 162 ASN 384 D GLY 385 n 163 GLY 385 D GLN 386 n 164 GLN 386 D PRO 387 n 165 PRO 387 D GLU 388 n 166 GLU 388 D ASN 389 n 167 ASN 389 D ASN 390 n 168 ASN 390 D TYR 391 n 169 TYR 391 D LYS 392 n 170 LYS 392 D THR 393 n 171 THR 393 D THR 394 n 172 THR 394 D PRO 395 n 173 PRO 395 D PRO 396 n 174 PRO 396 D VAL 397 n 175 VAL 397 D LEU 398 n 176 LEU 398 D ASP 399 n 177 ASP 399 D SER 400 n 178 SER 400 D ASP 401 n 179 ASP 401 D GLY 402 n 180 GLY 402 D SER 403 n 181 SER 403 D PHE 404 n 182 PHE 404 D PHE 405 n 183 PHE 405 D LEU 406 n 184 LEU 406 D TYR 407 n 185 TYR 407 D SER 408 n 186 SER 408 D LYS 409 n 187 LYS 409 D LEU 410 n 188 LEU 410 D THR 411 n 189 THR 411 D VAL 412 n 190 VAL 412 D ASP 413 n 191 ASP 413 D LYS 414 n 192 LYS 414 D SER 415 n 193 SER 415 D ARG 416 n 194 ARG 416 D TRP 417 n 195 TRP 417 D GLN 418 n 196 GLN 418 D GLN 419 n 197 GLN 419 D GLY 420 n 198 GLY 420 D ASN 421 n 199 ASN 421 D VAL 422 n 200 VAL 422 D PHE 423 n 201 PHE 423 D SER 424 n 202 SER 424 D CYS 425 n 203 CYS 425 D SER 426 n 204 SER 426 D VAL 427 n 205 VAL 427 D MET 428 n 206 MET 428 D HIS 429 n 207 HIS 429 D GLU 430 n 208 GLU 430 D ALA 431 n 209 ALA 431 D LEU 432 n 210 LEU 432 D HIS 433 n 211 HIS 433 D ASN 434 n 212 ASN 434 D HIS 435 n 213 HIS 435 D TYR 436 n 214 TYR 436 D THR 437 n 215 THR 437 D GLN 438 n 216 GLN 438 D LYS 439 n 217 LYS 439 D SER 440 n 218 SER 440 D LEU 441 n 219 LEU 441 D SER 442 n 220 SER 442 D LEU 443 n 221 LEU 443 D SER 444 n 222 SER 444 D n 223 445 D n 224 446 D author_defined_assembly 4 tetrameric D ASN 297 GLYCOSYLATION SITE B ASN 75 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_555 -x,-x+y,-z+1/3 crystal symmetry operation 0.0000000000 0.0000000000 49.1333333333 D N SER 239 B N SER 17 D O VAL 264 B O VAL 42 D O CYS 261 B O CYS 39 D N SER 304 B N SER 82 D O ARG 301 B O ARG 79 D N GLN 294 B N GLN 72 D N VAL 284 B N VAL 62 D O TRP 277 B O TRP 55 D O ASN 276 B O ASN 54 D N LYS 322 B N LYS 100 D O TYR 319 B O TYR 97 D N ILE 336 B N ILE 114 D O TYR 349 B O TYR 127 D N LEU 368 B N LEU 146 D O CYS 367 B O CYS 145 D N SER 408 B N SER 186 D O PHE 405 B O PHE 183 D N VAL 397 B N VAL 175 D N GLU 388 B N GLU 166 D O TRP 381 B O TRP 159 D O GLU 380 B O GLU 158 D N SER 426 B N SER 204 D O VAL 427 B O VAL 205 D N THR 437 B N THR 215 1 C CA ALA 167 A CA ALA 48 1 Y 1 C C ALA 167 A C ALA 48 1 Y 1 C O ALA 167 A O ALA 48 1 Y 1 C CB ALA 167 A CB ALA 48 1 Y 1 D CA SER 444 B CA SER 222 1 Y 1 D C SER 444 B C SER 222 1 Y 1 D O SER 444 B O SER 222 1 Y 1 D CB SER 444 B CB SER 222 1 Y 1 D OG SER 444 B OG SER 222 1 Y 1 C ALA 120 A ALA 1 1 Y 1 C ASP 121 A ASP 2 1 Y 1 C ASN 122 A ASN 3 1 Y 1 C LYS 123 A LYS 4 1 Y 1 C LYS 168 A LYS 49 1 Y 1 C LYS 169 A LYS 50 1 Y 1 C LEU 170 A LEU 51 1 Y 1 C ASN 171 A ASN 52 1 Y 1 C ASP 172 A ASP 53 1 Y 1 C ALA 173 A ALA 54 1 Y 1 C GLN 174 A GLN 55 1 Y 1 C UNK 175 A UNK 56 1 Y 1 C UNK 176 A UNK 57 1 Y 1 C LYS 177 A LYS 58 1 Y 1 D THR 223 B THR 1 1 Y 1 D HIS 224 B HIS 2 1 Y 1 D THR 225 B THR 3 1 Y 1 D CYS 226 B CYS 4 1 Y 1 D PRO 227 B PRO 5 1 Y 1 D PRO 228 B PRO 6 1 Y 1 D CYS 229 B CYS 7 1 Y 1 D PRO 230 B PRO 8 1 Y 1 D ALA 231 B ALA 9 1 Y 1 D PRO 232 B PRO 10 1 Y 1 D GLU 233 B GLU 11 1 Y 1 D LEU 234 B LEU 12 1 Y 1 D LEU 235 B LEU 13 1 Y 1 D GLY 236 B GLY 14 1 Y 1 D GLY 237 B GLY 15 1 Y 1 D PRO 445 B PRO 223 1 Y 1 D GLY 446 B GLY 224 1 Y 1 A C1 MAN 3 WRONG HAND 1 A C1 FUC 9 WRONG HAND 1 A C5 FUC 9 WRONG HAND 1 C LYS 154 12.26 1 D MET 252 10.08 1 D ASN 361 -12.36 1 D LEU 443 13.67 1 C ASN 125 0.071 SIDE CHAIN 1 C GLU 127 0.079 SIDE CHAIN 1 C ASN 140 0.090 SIDE CHAIN 1 D ASN 276 0.092 SIDE CHAIN 1 D ASN 325 0.077 SIDE CHAIN 1 D GLU 380 0.078 SIDE CHAIN 1 D GLN 386 0.101 SIDE CHAIN 1 D GLU 388 0.070 SIDE CHAIN 1 D ASN 390 0.070 SIDE CHAIN 1 D ASP 399 0.078 SIDE CHAIN 1 D ASP 401 0.073 SIDE CHAIN 1 D ASP 413 0.096 SIDE CHAIN 1 D GLN 418 0.083 SIDE CHAIN 1 D GLN 438 0.074 SIDE CHAIN 1 9.02 1.50 110.80 119.82 D D D N CA CB CYS CYS CYS 367 367 367 N 1 D D NE1 CE2 TRP TRP 277 277 -0.100 0.013 1.371 1.271 N 1 D D NE1 CE2 TRP TRP 313 313 -0.099 0.013 1.371 1.272 N 1 D D NE1 CE2 TRP TRP 381 381 -0.102 0.013 1.371 1.269 N 1 D D NE1 CE2 TRP TRP 417 417 -0.103 0.013 1.371 1.268 N 1 D D OE2 NZ GLU LYS 356 439 0.71 1_555 6_555 1 C D NE2 ND2 GLN ASN 159 390 1.56 1_555 5_665 1 D D CD NZ GLU LYS 356 439 1.59 1_555 6_555 1 C D NE2 CG GLN ASN 159 390 1.89 1_555 5_665 1 D D OE2 CE GLU LYS 356 439 2.08 1_555 6_555 1 D D OE1 NZ GLU LYS 356 439 2.10 1_555 6_555 1 C D CD ND2 GLN ASN 159 390 2.15 1_555 5_665 1 C ASN 125 140.44 149.40 1 C LYS 126 80.46 176.14 1 C GLU 143 49.64 -91.61 1 C SER 158 167.57 -62.28 1 C SER 160 -46.53 86.23 1 C ALA 161 162.20 -14.18 1 C ASN 162 -69.31 3.04 1 C LEU 164 103.00 126.46 1 C ALA 165 -105.70 -67.04 1 D ASP 265 153.99 -95.48 1 D VAL 266 68.43 -47.36 1 D SER 267 84.10 165.11 1 D GLU 269 74.38 -27.95 1 D ASP 280 56.22 -115.94 1 D HIS 285 57.09 -111.43 1 D TYR 296 -104.60 -160.15 1 D ASN 297 14.17 -91.46 1 D SER 298 -149.80 11.95 1 D SER 324 -78.29 -100.04 1 D ASN 325 66.69 -175.33 1 D ALA 327 -69.39 1.54 1 D PRO 331 -59.63 100.99 1 D ALA 339 0.58 -78.29 1 D LYS 340 86.26 103.79 1 D GLN 342 113.42 115.67 1 D ASP 376 -66.65 89.11 1 D ASN 384 63.72 -41.66 1 D ASN 390 -97.07 40.82 2.8 1 2.8 0 2125 115 0 2010 IMMUNOGLOBULIN FC AND FRAGMENT B OF PROTEIN A COMPLEX Crystallographic Refinement and Atomic Models of a Human FC Fragment and its Complex with Fragment B of Protein A from Staphylococcus Aureus at 2.9-and 2.8-Angstroms Resolution 1 N N 2 N N 3 N N 4 N N THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT, FOR WHICH COORDINATES ARE PRESENTED BELOW, CONSISTS OF ONE FRAGMENT B OF PROTEIN A (CHAIN INDICATOR C BELOW) AND ONE-HALF OF AN FC FRAGMENT (CHAIN INDICATOR D BELOW) TOGETHER WITH ITS POLYSACCHARIDE. THE FOLLOWING SYMMETRY OPERATION WHEN APPLIED TO THE COORDINATES OF THE ONE-HALF OF THE FC FRAGMENT GIVEN BELOW (CHAIN D) WILL GENERATE THE SECOND HALF OF THE FC FRAGMENT MOLECULE TRNSF1 1 -0.50000 -0.86603 0.00000 0.000 TRNSF2 1 -0.86603 0.50000 0.00000 0.000 TRNSF3 1 0.00000 0.00000 -1.00000 49.133 C GLN 128 A GLN 9 HELX_P C LEU 136 A LEU 17 1 H1 9 C GLU 144 A GLU 25 HELX_P C ASP 155 A ASP 36 1 H2 12 disulf 2.065 D CYS 261 B SG CYS 39 1_555 D CYS 321 B SG CYS 99 1_555 disulf 2.028 D CYS 367 B SG CYS 145 1_555 D CYS 425 B SG CYS 203 1_555 covale 1.472 one N-Glycosylation D ASN 297 B ND2 ASN 75 1_555 A NAG 1 C C1 NAG 1_555 covale 1.433 both A NAG 1 C O4 NAG 1_555 A NAG 2 C C1 NAG 1_555 covale 1.429 both A NAG 1 C O6 NAG 1_555 A FUC 9 C C1 FUC 1_555 covale 1.428 both A NAG 2 C O4 NAG 1_555 A MAN 3 C C1 MAN 1_555 covale 1.427 both A MAN 3 C O6 MAN 1_555 A MAN 4 C C1 MAN 1_555 covale 1.428 both A MAN 3 C O3 MAN 1_555 A MAN 7 C C1 MAN 1_555 covale 1.427 both A MAN 4 C O2 MAN 1_555 A NAG 5 C C1 NAG 1_555 covale 1.440 both A NAG 5 C O4 NAG 1_555 A GAL 6 C C1 GAL 1_555 covale 1.431 both A MAN 7 C O2 MAN 1_555 A NAG 8 C C1 NAG 1_555 IMMUNOGLOBULIN IMMUNOGLOBULIN D TYR 373 B TYR 151 1 D PRO 374 B PRO 152 -5.08 SPA1_STAAU UNP 1 1 P02976 MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLG EAQKLNDSQAPKADAQQNNFNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNK EQQNAFYEILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEILHLPNLNEEQRNG FIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEEQRNGFIQSLKDDPSVSKEILAEAKKL NDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGK EDNKKPGKEDGNKPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKKQPAN HADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL CAA75032 EMBL 2 1 Y14737 MEFGLSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRLSCAASGFTFSNYGMHWVRQAPGKGLEWVAAIWYDGSNKYYA DSVKGRFTISRDNSKNTLYMQMNSLRAEDTAVYYCAREGRWVRYTTVTTIGYYFDYWGQGTLVTVSSASTKGPSVFPLAP SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK VDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVK GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK 212 269 1FC2 120 177 P02976 C 1 1 58 253 476 1FC2 223 446 Y14737 D 2 1 224 1 ALA conflict UNK 175 1FC2 C P02976 UNP 267 56 1 PRO conflict UNK 176 1FC2 C P02976 UNP 268 57 2 GLU conflict GLN 272 1FC2 D Y14737 EMBL 302 50 2 GLU conflict GLN 283 1FC2 D Y14737 EMBL 313 61 2 GLU conflict GLN 294 1FC2 D Y14737 EMBL 324 72 2 ASP conflict ASN 312 1FC2 D Y14737 EMBL 342 90 2 ASN conflict ASP 315 1FC2 D Y14737 EMBL 345 93 4 4 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel D SER 239 B SER 17 D PHE 243 B PHE 21 D THR 256 B THR 34 D VAL 264 B VAL 42 D THR 299 B THR 77 D LEU 309 B LEU 87 D LYS 290 B LYS 68 D TYR 296 B TYR 74 D VAL 282 B VAL 60 D VAL 284 B VAL 62 D LYS 274 B LYS 52 D VAL 279 B VAL 57 D GLU 318 B GLU 96 D ASN 325 B ASN 103 D ILE 332 B ILE 110 D ILE 336 B ILE 114 D GLN 342 B GLN 120 D LEU 351 B LEU 129 D GLN 362 B GLN 140 D TYR 373 B TYR 151 D SER 403 B SER 181 D ASP 413 B ASP 191 D ASN 390 B ASN 168 D LEU 398 B LEU 176 D GLN 386 B GLN 164 D GLU 388 B GLU 166 D ILE 377 B ILE 155 D GLU 382 B GLU 160 D VAL 422 B VAL 200 D HIS 429 B HIS 207 D TYR 436 B TYR 214 D LEU 443 B LEU 221 152 P 31 2 1