.014164
.008178
0.000000
0.000000
.016356
0.000000
0.000000
0.000000
.006784
0.00000
0.00000
0.00000
THESE ATOMS WERE NOT FOUND IN THE ELECTRON DENSITY MAP. THEIR COORDINATES WERE GENERATED USING STEREOCHEMICAL CRITERIA
RESIDUE PRO D 374 IS A CIS-PROLINE.
Deisenhofer, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
70.600
70.600
147.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O5
164.156
alpha-L-fucopyranose
alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose
L-saccharide, alpha linking
C6 H12 O6
180.156
beta-D-galactopyranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C4 H9 N O2
103.120
UNKNOWN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
20
2361
2370
10.1021/bi00512a001
7236608
Crystallographic refinement and atomic models of a human Fc fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9- and 2.8-A resolution.
1981
GW
Hoppe-Seyler's Z.Physiol.Chem.
HSZPAZ
0905
0018-4888
359
975
Crystallization, Crystal Structure Analysis and Atomic Model of the Complex Formed by a Human Fc Fragment and Fragment B of Protein a from Staphylococcus Aureus
1978
MAN A 3 HAS WRONG CHIRALITY AT ATOM C1
FUC A 9 HAS WRONG CHIRALITY AT ATOM C1
FUC A 9 HAS WRONG CHIRALITY AT ATOM C5
1.000000
.577350
0.000000
0.000000
1.154701
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
6608.254
FRAGMENT B OF PROTEIN A COMPLEX
1
man
polymer
25236.615
IMMUNOGLOBULIN FC
1
man
polymer
1625.490
beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
96.063
SULFATE ION
1
syn
non-polymer
no
no
ADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQ(UNK)(UNK)K
ADNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQXXK
C
polypeptide(L)
no
no
THTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRV
VSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWE
SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
THTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRV
VSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWE
SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPG
D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NCTC 8325
sample
93061
Staphylococcus aureus subsp. aureus
human
sample
9606
Homo sapiens
3.33
63.03
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_database_status
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
pdbx_validate_chiral
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
atom_site
chem_comp
pdbx_nonpoly_scheme
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
pdbx_struct_oper_list
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Source and taxonomy
Version format compliance
Advisory
Atomic model
Data collection
Database references
Derived calculations
Other
Structure summary
Atomic model
Data collection
Derived calculations
Structure summary
1
0
1981-10-02
1
1
2008-03-24
1
2
2011-07-13
2
0
2020-07-29
3
0
2020-12-16
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.occupancy
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_database_status.process_site
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_atom_id
_pdbx_validate_chiral.auth_comp_id
_pdbx_validate_chiral.auth_seq_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_ref_seq_dif.details
_atom_site.auth_seq_id
_chem_comp.pdbx_synonyms
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_gen.oper_expression
D
NAG
1
n
A
NAG
1
D
NAG
3
n
A
NAG
2
D
MAN
4
n
A
MAN
3
D
MAN
5
n
A
MAN
4
D
NAG
6
n
A
NAG
5
D
GAL
7
n
A
GAL
6
D
MAN
8
n
A
MAN
7
D
NAG
9
n
A
NAG
8
D
FUC
2
n
A
FUC
9
LFucpa
a-L-fucopyranose
a-L-Fucp
Fuc
DGalpb
b-D-galactopyranose
b-D-Galp
Gal
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Y
BNL
1981-05-21
REL
oligosaccharide
DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpa1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-
3
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/4,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-2-1-2-1-3-4/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_g4-h1
3
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}}}[(6+1)][a-D-6-deoxy-Altp]{}}}
3
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
3
O1
HO4
sing
C1
O4
MAN
NAG
3
2
3
O1
HO4
sing
C1
O6
MAN
MAN
4
3
3
O1
HO6
sing
C1
O2
NAG
MAN
5
4
3
O1
HO2
sing
C1
O4
GAL
NAG
6
5
3
O1
HO4
sing
C1
O3
MAN
MAN
7
3
3
O1
HO3
sing
C1
O2
NAG
MAN
8
7
3
O1
HO2
sing
C1
O6
FUC
NAG
9
1
3
O1
HO6
sing
n
n
n
n
n
n
n
n
n
SO4
SULFATE ION
SO4
10
4
SO4
SO4
201
C
n
1
120
C
n
2
121
C
n
3
122
C
n
4
123
C
PHE
124
n
5
PHE
124
C
ASN
125
n
6
ASN
125
C
LYS
126
n
7
LYS
126
C
GLU
127
n
8
GLU
127
C
GLN
128
n
9
GLN
128
C
GLN
129
n
10
GLN
129
C
ASN
130
n
11
ASN
130
C
ALA
131
n
12
ALA
131
C
PHE
132
n
13
PHE
132
C
TYR
133
n
14
TYR
133
C
GLU
134
n
15
GLU
134
C
ILE
135
n
16
ILE
135
C
LEU
136
n
17
LEU
136
C
HIS
137
n
18
HIS
137
C
LEU
138
n
19
LEU
138
C
PRO
139
n
20
PRO
139
C
ASN
140
n
21
ASN
140
C
LEU
141
n
22
LEU
141
C
ASN
142
n
23
ASN
142
C
GLU
143
n
24
GLU
143
C
GLU
144
n
25
GLU
144
C
GLN
145
n
26
GLN
145
C
ARG
146
n
27
ARG
146
C
ASN
147
n
28
ASN
147
C
GLY
148
n
29
GLY
148
C
PHE
149
n
30
PHE
149
C
ILE
150
n
31
ILE
150
C
GLN
151
n
32
GLN
151
C
SER
152
n
33
SER
152
C
LEU
153
n
34
LEU
153
C
LYS
154
n
35
LYS
154
C
ASP
155
n
36
ASP
155
C
ASP
156
n
37
ASP
156
C
PRO
157
n
38
PRO
157
C
SER
158
n
39
SER
158
C
GLN
159
n
40
GLN
159
C
SER
160
n
41
SER
160
C
ALA
161
n
42
ALA
161
C
ASN
162
n
43
ASN
162
C
LEU
163
n
44
LEU
163
C
LEU
164
n
45
LEU
164
C
ALA
165
n
46
ALA
165
C
GLU
166
n
47
GLU
166
C
ALA
167
n
48
ALA
167
C
n
49
168
C
n
50
169
C
n
51
170
C
n
52
171
C
n
53
172
C
n
54
173
C
n
55
174
C
n
56
175
C
n
57
176
C
n
58
177
C
n
1
223
D
n
2
224
D
n
3
225
D
n
4
226
D
n
5
227
D
n
6
228
D
n
7
229
D
n
8
230
D
n
9
231
D
n
10
232
D
n
11
233
D
n
12
234
D
n
13
235
D
n
14
236
D
n
15
237
D
PRO
238
n
16
PRO
238
D
SER
239
n
17
SER
239
D
VAL
240
n
18
VAL
240
D
PHE
241
n
19
PHE
241
D
LEU
242
n
20
LEU
242
D
PHE
243
n
21
PHE
243
D
PRO
244
n
22
PRO
244
D
PRO
245
n
23
PRO
245
D
LYS
246
n
24
LYS
246
D
PRO
247
n
25
PRO
247
D
LYS
248
n
26
LYS
248
D
ASP
249
n
27
ASP
249
D
THR
250
n
28
THR
250
D
LEU
251
n
29
LEU
251
D
MET
252
n
30
MET
252
D
ILE
253
n
31
ILE
253
D
SER
254
n
32
SER
254
D
ARG
255
n
33
ARG
255
D
THR
256
n
34
THR
256
D
PRO
257
n
35
PRO
257
D
GLU
258
n
36
GLU
258
D
VAL
259
n
37
VAL
259
D
THR
260
n
38
THR
260
D
CYS
261
n
39
CYS
261
D
VAL
262
n
40
VAL
262
D
VAL
263
n
41
VAL
263
D
VAL
264
n
42
VAL
264
D
ASP
265
n
43
ASP
265
D
VAL
266
n
44
VAL
266
D
SER
267
n
45
SER
267
D
HIS
268
n
46
HIS
268
D
GLU
269
n
47
GLU
269
D
ASP
270
n
48
ASP
270
D
PRO
271
n
49
PRO
271
D
GLN
272
n
50
GLN
272
D
VAL
273
n
51
VAL
273
D
LYS
274
n
52
LYS
274
D
PHE
275
n
53
PHE
275
D
ASN
276
n
54
ASN
276
D
TRP
277
n
55
TRP
277
D
TYR
278
n
56
TYR
278
D
VAL
279
n
57
VAL
279
D
ASP
280
n
58
ASP
280
D
GLY
281
n
59
GLY
281
D
VAL
282
n
60
VAL
282
D
GLN
283
n
61
GLN
283
D
VAL
284
n
62
VAL
284
D
HIS
285
n
63
HIS
285
D
ASN
286
n
64
ASN
286
D
ALA
287
n
65
ALA
287
D
LYS
288
n
66
LYS
288
D
THR
289
n
67
THR
289
D
LYS
290
n
68
LYS
290
D
PRO
291
n
69
PRO
291
D
ARG
292
n
70
ARG
292
D
GLU
293
n
71
GLU
293
D
GLN
294
n
72
GLN
294
D
GLN
295
n
73
GLN
295
D
TYR
296
n
74
TYR
296
D
ASN
297
n
75
ASN
297
D
SER
298
n
76
SER
298
D
THR
299
n
77
THR
299
D
TYR
300
n
78
TYR
300
D
ARG
301
n
79
ARG
301
D
VAL
302
n
80
VAL
302
D
VAL
303
n
81
VAL
303
D
SER
304
n
82
SER
304
D
VAL
305
n
83
VAL
305
D
LEU
306
n
84
LEU
306
D
THR
307
n
85
THR
307
D
VAL
308
n
86
VAL
308
D
LEU
309
n
87
LEU
309
D
HIS
310
n
88
HIS
310
D
GLN
311
n
89
GLN
311
D
ASN
312
n
90
ASN
312
D
TRP
313
n
91
TRP
313
D
LEU
314
n
92
LEU
314
D
ASP
315
n
93
ASP
315
D
GLY
316
n
94
GLY
316
D
LYS
317
n
95
LYS
317
D
GLU
318
n
96
GLU
318
D
TYR
319
n
97
TYR
319
D
LYS
320
n
98
LYS
320
D
CYS
321
n
99
CYS
321
D
LYS
322
n
100
LYS
322
D
VAL
323
n
101
VAL
323
D
SER
324
n
102
SER
324
D
ASN
325
n
103
ASN
325
D
LYS
326
n
104
LYS
326
D
ALA
327
n
105
ALA
327
D
LEU
328
n
106
LEU
328
D
PRO
329
n
107
PRO
329
D
ALA
330
n
108
ALA
330
D
PRO
331
n
109
PRO
331
D
ILE
332
n
110
ILE
332
D
GLU
333
n
111
GLU
333
D
LYS
334
n
112
LYS
334
D
THR
335
n
113
THR
335
D
ILE
336
n
114
ILE
336
D
SER
337
n
115
SER
337
D
LYS
338
n
116
LYS
338
D
ALA
339
n
117
ALA
339
D
LYS
340
n
118
LYS
340
D
GLY
341
n
119
GLY
341
D
GLN
342
n
120
GLN
342
D
PRO
343
n
121
PRO
343
D
ARG
344
n
122
ARG
344
D
GLU
345
n
123
GLU
345
D
PRO
346
n
124
PRO
346
D
GLN
347
n
125
GLN
347
D
VAL
348
n
126
VAL
348
D
TYR
349
n
127
TYR
349
D
THR
350
n
128
THR
350
D
LEU
351
n
129
LEU
351
D
PRO
352
n
130
PRO
352
D
PRO
353
n
131
PRO
353
D
SER
354
n
132
SER
354
D
ARG
355
n
133
ARG
355
D
GLU
356
n
134
GLU
356
D
GLU
357
n
135
GLU
357
D
MET
358
n
136
MET
358
D
THR
359
n
137
THR
359
D
LYS
360
n
138
LYS
360
D
ASN
361
n
139
ASN
361
D
GLN
362
n
140
GLN
362
D
VAL
363
n
141
VAL
363
D
SER
364
n
142
SER
364
D
LEU
365
n
143
LEU
365
D
THR
366
n
144
THR
366
D
CYS
367
n
145
CYS
367
D
LEU
368
n
146
LEU
368
D
VAL
369
n
147
VAL
369
D
LYS
370
n
148
LYS
370
D
GLY
371
n
149
GLY
371
D
PHE
372
n
150
PHE
372
D
TYR
373
n
151
TYR
373
D
PRO
374
n
152
PRO
374
D
SER
375
n
153
SER
375
D
ASP
376
n
154
ASP
376
D
ILE
377
n
155
ILE
377
D
ALA
378
n
156
ALA
378
D
VAL
379
n
157
VAL
379
D
GLU
380
n
158
GLU
380
D
TRP
381
n
159
TRP
381
D
GLU
382
n
160
GLU
382
D
SER
383
n
161
SER
383
D
ASN
384
n
162
ASN
384
D
GLY
385
n
163
GLY
385
D
GLN
386
n
164
GLN
386
D
PRO
387
n
165
PRO
387
D
GLU
388
n
166
GLU
388
D
ASN
389
n
167
ASN
389
D
ASN
390
n
168
ASN
390
D
TYR
391
n
169
TYR
391
D
LYS
392
n
170
LYS
392
D
THR
393
n
171
THR
393
D
THR
394
n
172
THR
394
D
PRO
395
n
173
PRO
395
D
PRO
396
n
174
PRO
396
D
VAL
397
n
175
VAL
397
D
LEU
398
n
176
LEU
398
D
ASP
399
n
177
ASP
399
D
SER
400
n
178
SER
400
D
ASP
401
n
179
ASP
401
D
GLY
402
n
180
GLY
402
D
SER
403
n
181
SER
403
D
PHE
404
n
182
PHE
404
D
PHE
405
n
183
PHE
405
D
LEU
406
n
184
LEU
406
D
TYR
407
n
185
TYR
407
D
SER
408
n
186
SER
408
D
LYS
409
n
187
LYS
409
D
LEU
410
n
188
LEU
410
D
THR
411
n
189
THR
411
D
VAL
412
n
190
VAL
412
D
ASP
413
n
191
ASP
413
D
LYS
414
n
192
LYS
414
D
SER
415
n
193
SER
415
D
ARG
416
n
194
ARG
416
D
TRP
417
n
195
TRP
417
D
GLN
418
n
196
GLN
418
D
GLN
419
n
197
GLN
419
D
GLY
420
n
198
GLY
420
D
ASN
421
n
199
ASN
421
D
VAL
422
n
200
VAL
422
D
PHE
423
n
201
PHE
423
D
SER
424
n
202
SER
424
D
CYS
425
n
203
CYS
425
D
SER
426
n
204
SER
426
D
VAL
427
n
205
VAL
427
D
MET
428
n
206
MET
428
D
HIS
429
n
207
HIS
429
D
GLU
430
n
208
GLU
430
D
ALA
431
n
209
ALA
431
D
LEU
432
n
210
LEU
432
D
HIS
433
n
211
HIS
433
D
ASN
434
n
212
ASN
434
D
HIS
435
n
213
HIS
435
D
TYR
436
n
214
TYR
436
D
THR
437
n
215
THR
437
D
GLN
438
n
216
GLN
438
D
LYS
439
n
217
LYS
439
D
SER
440
n
218
SER
440
D
LEU
441
n
219
LEU
441
D
SER
442
n
220
SER
442
D
LEU
443
n
221
LEU
443
D
SER
444
n
222
SER
444
D
n
223
445
D
n
224
446
D
author_defined_assembly
4
tetrameric
D
ASN
297
GLYCOSYLATION SITE
B
ASN
75
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
49.1333333333
D
N
SER
239
B
N
SER
17
D
O
VAL
264
B
O
VAL
42
D
O
CYS
261
B
O
CYS
39
D
N
SER
304
B
N
SER
82
D
O
ARG
301
B
O
ARG
79
D
N
GLN
294
B
N
GLN
72
D
N
VAL
284
B
N
VAL
62
D
O
TRP
277
B
O
TRP
55
D
O
ASN
276
B
O
ASN
54
D
N
LYS
322
B
N
LYS
100
D
O
TYR
319
B
O
TYR
97
D
N
ILE
336
B
N
ILE
114
D
O
TYR
349
B
O
TYR
127
D
N
LEU
368
B
N
LEU
146
D
O
CYS
367
B
O
CYS
145
D
N
SER
408
B
N
SER
186
D
O
PHE
405
B
O
PHE
183
D
N
VAL
397
B
N
VAL
175
D
N
GLU
388
B
N
GLU
166
D
O
TRP
381
B
O
TRP
159
D
O
GLU
380
B
O
GLU
158
D
N
SER
426
B
N
SER
204
D
O
VAL
427
B
O
VAL
205
D
N
THR
437
B
N
THR
215
1
C
CA
ALA
167
A
CA
ALA
48
1
Y
1
C
C
ALA
167
A
C
ALA
48
1
Y
1
C
O
ALA
167
A
O
ALA
48
1
Y
1
C
CB
ALA
167
A
CB
ALA
48
1
Y
1
D
CA
SER
444
B
CA
SER
222
1
Y
1
D
C
SER
444
B
C
SER
222
1
Y
1
D
O
SER
444
B
O
SER
222
1
Y
1
D
CB
SER
444
B
CB
SER
222
1
Y
1
D
OG
SER
444
B
OG
SER
222
1
Y
1
C
ALA
120
A
ALA
1
1
Y
1
C
ASP
121
A
ASP
2
1
Y
1
C
ASN
122
A
ASN
3
1
Y
1
C
LYS
123
A
LYS
4
1
Y
1
C
LYS
168
A
LYS
49
1
Y
1
C
LYS
169
A
LYS
50
1
Y
1
C
LEU
170
A
LEU
51
1
Y
1
C
ASN
171
A
ASN
52
1
Y
1
C
ASP
172
A
ASP
53
1
Y
1
C
ALA
173
A
ALA
54
1
Y
1
C
GLN
174
A
GLN
55
1
Y
1
C
UNK
175
A
UNK
56
1
Y
1
C
UNK
176
A
UNK
57
1
Y
1
C
LYS
177
A
LYS
58
1
Y
1
D
THR
223
B
THR
1
1
Y
1
D
HIS
224
B
HIS
2
1
Y
1
D
THR
225
B
THR
3
1
Y
1
D
CYS
226
B
CYS
4
1
Y
1
D
PRO
227
B
PRO
5
1
Y
1
D
PRO
228
B
PRO
6
1
Y
1
D
CYS
229
B
CYS
7
1
Y
1
D
PRO
230
B
PRO
8
1
Y
1
D
ALA
231
B
ALA
9
1
Y
1
D
PRO
232
B
PRO
10
1
Y
1
D
GLU
233
B
GLU
11
1
Y
1
D
LEU
234
B
LEU
12
1
Y
1
D
LEU
235
B
LEU
13
1
Y
1
D
GLY
236
B
GLY
14
1
Y
1
D
GLY
237
B
GLY
15
1
Y
1
D
PRO
445
B
PRO
223
1
Y
1
D
GLY
446
B
GLY
224
1
Y
1
A
C1
MAN
3
WRONG HAND
1
A
C1
FUC
9
WRONG HAND
1
A
C5
FUC
9
WRONG HAND
1
C
LYS
154
12.26
1
D
MET
252
10.08
1
D
ASN
361
-12.36
1
D
LEU
443
13.67
1
C
ASN
125
0.071
SIDE CHAIN
1
C
GLU
127
0.079
SIDE CHAIN
1
C
ASN
140
0.090
SIDE CHAIN
1
D
ASN
276
0.092
SIDE CHAIN
1
D
ASN
325
0.077
SIDE CHAIN
1
D
GLU
380
0.078
SIDE CHAIN
1
D
GLN
386
0.101
SIDE CHAIN
1
D
GLU
388
0.070
SIDE CHAIN
1
D
ASN
390
0.070
SIDE CHAIN
1
D
ASP
399
0.078
SIDE CHAIN
1
D
ASP
401
0.073
SIDE CHAIN
1
D
ASP
413
0.096
SIDE CHAIN
1
D
GLN
418
0.083
SIDE CHAIN
1
D
GLN
438
0.074
SIDE CHAIN
1
9.02
1.50
110.80
119.82
D
D
D
N
CA
CB
CYS
CYS
CYS
367
367
367
N
1
D
D
NE1
CE2
TRP
TRP
277
277
-0.100
0.013
1.371
1.271
N
1
D
D
NE1
CE2
TRP
TRP
313
313
-0.099
0.013
1.371
1.272
N
1
D
D
NE1
CE2
TRP
TRP
381
381
-0.102
0.013
1.371
1.269
N
1
D
D
NE1
CE2
TRP
TRP
417
417
-0.103
0.013
1.371
1.268
N
1
D
D
OE2
NZ
GLU
LYS
356
439
0.71
1_555
6_555
1
C
D
NE2
ND2
GLN
ASN
159
390
1.56
1_555
5_665
1
D
D
CD
NZ
GLU
LYS
356
439
1.59
1_555
6_555
1
C
D
NE2
CG
GLN
ASN
159
390
1.89
1_555
5_665
1
D
D
OE2
CE
GLU
LYS
356
439
2.08
1_555
6_555
1
D
D
OE1
NZ
GLU
LYS
356
439
2.10
1_555
6_555
1
C
D
CD
ND2
GLN
ASN
159
390
2.15
1_555
5_665
1
C
ASN
125
140.44
149.40
1
C
LYS
126
80.46
176.14
1
C
GLU
143
49.64
-91.61
1
C
SER
158
167.57
-62.28
1
C
SER
160
-46.53
86.23
1
C
ALA
161
162.20
-14.18
1
C
ASN
162
-69.31
3.04
1
C
LEU
164
103.00
126.46
1
C
ALA
165
-105.70
-67.04
1
D
ASP
265
153.99
-95.48
1
D
VAL
266
68.43
-47.36
1
D
SER
267
84.10
165.11
1
D
GLU
269
74.38
-27.95
1
D
ASP
280
56.22
-115.94
1
D
HIS
285
57.09
-111.43
1
D
TYR
296
-104.60
-160.15
1
D
ASN
297
14.17
-91.46
1
D
SER
298
-149.80
11.95
1
D
SER
324
-78.29
-100.04
1
D
ASN
325
66.69
-175.33
1
D
ALA
327
-69.39
1.54
1
D
PRO
331
-59.63
100.99
1
D
ALA
339
0.58
-78.29
1
D
LYS
340
86.26
103.79
1
D
GLN
342
113.42
115.67
1
D
ASP
376
-66.65
89.11
1
D
ASN
384
63.72
-41.66
1
D
ASN
390
-97.07
40.82
2.8
1
2.8
0
2125
115
0
2010
IMMUNOGLOBULIN FC AND FRAGMENT B OF PROTEIN A COMPLEX
Crystallographic Refinement and Atomic Models of a Human FC Fragment and its Complex with Fragment B of Protein A from Staphylococcus Aureus at 2.9-and 2.8-Angstroms Resolution
1
N
N
2
N
N
3
N
N
4
N
N
THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT, FOR WHICH COORDINATES
ARE PRESENTED BELOW, CONSISTS OF ONE FRAGMENT B OF PROTEIN
A (CHAIN INDICATOR C BELOW) AND ONE-HALF OF AN FC FRAGMENT
(CHAIN INDICATOR D BELOW) TOGETHER WITH ITS POLYSACCHARIDE.
THE FOLLOWING SYMMETRY OPERATION WHEN APPLIED TO THE
COORDINATES OF THE ONE-HALF OF THE FC FRAGMENT GIVEN BELOW
(CHAIN D) WILL GENERATE THE SECOND HALF OF THE FC FRAGMENT
MOLECULE
TRNSF1 1 -0.50000 -0.86603 0.00000 0.000
TRNSF2 1 -0.86603 0.50000 0.00000 0.000
TRNSF3 1 0.00000 0.00000 -1.00000 49.133
C
GLN
128
A
GLN
9
HELX_P
C
LEU
136
A
LEU
17
1
H1
9
C
GLU
144
A
GLU
25
HELX_P
C
ASP
155
A
ASP
36
1
H2
12
disulf
2.065
D
CYS
261
B
SG
CYS
39
1_555
D
CYS
321
B
SG
CYS
99
1_555
disulf
2.028
D
CYS
367
B
SG
CYS
145
1_555
D
CYS
425
B
SG
CYS
203
1_555
covale
1.472
one
N-Glycosylation
D
ASN
297
B
ND2
ASN
75
1_555
A
NAG
1
C
C1
NAG
1_555
covale
1.433
both
A
NAG
1
C
O4
NAG
1_555
A
NAG
2
C
C1
NAG
1_555
covale
1.429
both
A
NAG
1
C
O6
NAG
1_555
A
FUC
9
C
C1
FUC
1_555
covale
1.428
both
A
NAG
2
C
O4
NAG
1_555
A
MAN
3
C
C1
MAN
1_555
covale
1.427
both
A
MAN
3
C
O6
MAN
1_555
A
MAN
4
C
C1
MAN
1_555
covale
1.428
both
A
MAN
3
C
O3
MAN
1_555
A
MAN
7
C
C1
MAN
1_555
covale
1.427
both
A
MAN
4
C
O2
MAN
1_555
A
NAG
5
C
C1
NAG
1_555
covale
1.440
both
A
NAG
5
C
O4
NAG
1_555
A
GAL
6
C
C1
GAL
1_555
covale
1.431
both
A
MAN
7
C
O2
MAN
1_555
A
NAG
8
C
C1
NAG
1_555
IMMUNOGLOBULIN
IMMUNOGLOBULIN
D
TYR
373
B
TYR
151
1
D
PRO
374
B
PRO
152
-5.08
SPA1_STAAU
UNP
1
1
P02976
MKKKNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLG
EAQKLNDSQAPKADAQQNNFNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNK
EQQNAFYEILNMPNLNEEQRNGFIQSLKDDPSQSANLLSEAKKLNESQAPKADNKFNKEQQNAFYEILHLPNLNEEQRNG
FIQSLKDDPSQSANLLAEAKKLNDAQAPKADNKFNKEQQNAFYEILHLPNLTEEQRNGFIQSLKDDPSVSKEILAEAKKL
NDAQAPKEEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDNNKPGKEDGNKPGKEDNKKPGKEDGNKPGK
EDNKKPGKEDGNKPGKEDGNKPGKEDGNGVHVVKPGDTVNDIAKANGTTADKIAADNKLADKNMIKPGQELVVDKKQPAN
HADANKAQALPETGEENPFIGTTVFGGLSLALGAALLAGRRREL
CAA75032
EMBL
2
1
Y14737
MEFGLSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRLSCAASGFTFSNYGMHWVRQAPGKGLEWVAAIWYDGSNKYYA
DSVKGRFTISRDNSKNTLYMQMNSLRAEDTAVYYCAREGRWVRYTTVTTIGYYFDYWGQGTLVTVSSASTKGPSVFPLAP
SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK
VDKRVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK
PREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVK
GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
212
269
1FC2
120
177
P02976
C
1
1
58
253
476
1FC2
223
446
Y14737
D
2
1
224
1
ALA
conflict
UNK
175
1FC2
C
P02976
UNP
267
56
1
PRO
conflict
UNK
176
1FC2
C
P02976
UNP
268
57
2
GLU
conflict
GLN
272
1FC2
D
Y14737
EMBL
302
50
2
GLU
conflict
GLN
283
1FC2
D
Y14737
EMBL
313
61
2
GLU
conflict
GLN
294
1FC2
D
Y14737
EMBL
324
72
2
ASP
conflict
ASN
312
1FC2
D
Y14737
EMBL
342
90
2
ASN
conflict
ASP
315
1FC2
D
Y14737
EMBL
345
93
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
D
SER
239
B
SER
17
D
PHE
243
B
PHE
21
D
THR
256
B
THR
34
D
VAL
264
B
VAL
42
D
THR
299
B
THR
77
D
LEU
309
B
LEU
87
D
LYS
290
B
LYS
68
D
TYR
296
B
TYR
74
D
VAL
282
B
VAL
60
D
VAL
284
B
VAL
62
D
LYS
274
B
LYS
52
D
VAL
279
B
VAL
57
D
GLU
318
B
GLU
96
D
ASN
325
B
ASN
103
D
ILE
332
B
ILE
110
D
ILE
336
B
ILE
114
D
GLN
342
B
GLN
120
D
LEU
351
B
LEU
129
D
GLN
362
B
GLN
140
D
TYR
373
B
TYR
151
D
SER
403
B
SER
181
D
ASP
413
B
ASP
191
D
ASN
390
B
ASN
168
D
LEU
398
B
LEU
176
D
GLN
386
B
GLN
164
D
GLU
388
B
GLU
166
D
ILE
377
B
ILE
155
D
GLU
382
B
GLU
160
D
VAL
422
B
VAL
200
D
HIS
429
B
HIS
207
D
TYR
436
B
TYR
214
D
LEU
443
B
LEU
221
152
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