1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ross, S.A. Sarisky, C.A. Su, A. Mayo, S.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N O N 21 N N N 22 N O N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N N N 32 S C N 33 N C N 34 N O N 35 N C N 36 N C N 37 N O N 38 N O N 39 N O N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N N N 48 S C N 49 N C N 50 N O N 51 N C N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N N N 68 S C N 69 N C N 70 N O N 71 N C N 72 N C N 73 N C N 74 N O N 75 N O N 76 N O N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N N N 87 N C N 88 N C N 89 N O N 90 N O N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N N N 97 S C N 98 N C N 99 N O N 100 S C N 101 N C N 102 N C N 103 N C N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N C N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N N N 141 S C N 142 N C N 143 N O N 144 N C N 145 N C N 146 N C N 147 N C N 148 N N N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N N N 166 S C N 167 N C N 168 N O N 169 N C Y 170 N C Y 171 N C Y 172 N C Y 173 N C Y 174 N C Y 175 N C N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 R C N 193 N O N 194 N C N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C Y 210 N C Y 211 N C Y 212 N C Y 213 N N Y 214 N C Y 215 N C Y 216 N C Y 217 N C Y 218 N C N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C Y 237 N C Y 238 N C Y 239 N C Y 240 N C Y 241 N C Y 242 N C N 243 N O N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 S C N 258 N C N 259 N O N 260 N C N 261 N C N 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N doub N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N doub N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing Y 167 N doub Y 168 N sing Y 169 N sing N 170 N sing Y 171 N doub N 172 N sing Y 173 N doub N 174 N sing Y 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing Y 206 N doub Y 207 N sing Y 208 N sing N 209 N sing Y 210 N doub Y 211 N sing Y 212 N sing N 213 N sing Y 214 N sing Y 215 N doub N 216 N sing Y 217 N doub N 218 N sing Y 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing Y 234 N doub Y 235 N sing Y 236 N sing N 237 N sing Y 238 N doub N 239 N sing Y 240 N doub N 241 N sing Y 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing US Protein Sci. PRCIEI 0795 0961-8368 10 450 454 10.1110/ps.32501 11266631 Designed protein G core variants fold to native-like structures: sequence selection by ORBIT tolerates variation in backbone specification. 2001 10.2210/pdb1fcl/pdb pdb_00001fcl 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 6216.819 IMMUNOGLOBULIN G BINDING PROTEIN G GB1_DELTA1.5 Y3F, L7I, F30L, A34I, V39I, F52W 1 man polymer IGG BINDING PROTEIN G no no TTFKLIINGKTLKGETTTEAVDAATAEKVLKQYINDNGIDGEWTYDDATKTWTVTE TTFKLIINGKTLKGETTTEAVDAATAEKVLKQYINDNGIDGEWTYDDATKTWTVTE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Streptococcus Escherichia sample 1306 Streptococcus sp. 562 Escherichia coli database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection 1 0 2001-09-19 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-03 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details DELTA0: A Computationally Designed Core Variant of the B1 Domain of Streptococcal Protein G Protein G (B1 Domain) HYPERTHERMOPHILIC VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G RCSB Y RCSB 2000-07-18 REL REL none Structures with the Least Restraint Violations, Structures with the Lowest Energy 100 40 2D NOESY DQF-COSY E-COSY TOCSY 50 mM sodium phosphate 6.0 Atmospheric atm 298 K Standard Distance Geometry/simulated Annealing Methods 1 lowest energy 1 mM unlabeled protein in 50 mM sodium phosphate, pH 6.0 either D2O or 90:10 H2O:D2O Varian collection VNMR 5.2f, 5.3a, 6.1b MSI processing NMRCompass 2.5 P. Kraulis processing ANSIG 3.3 Brunger refinement X-PLOR 3.1 600 Varian UNITYPLUS THR 1 n 1 THR 1 A THR 2 n 2 THR 2 A PHE 3 n 3 PHE 3 A LYS 4 n 4 LYS 4 A LEU 5 n 5 LEU 5 A ILE 6 n 6 ILE 6 A ILE 7 n 7 ILE 7 A ASN 8 n 8 ASN 8 A GLY 9 n 9 GLY 9 A LYS 10 n 10 LYS 10 A THR 11 n 11 THR 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A GLY 14 n 14 GLY 14 A GLU 15 n 15 GLU 15 A THR 16 n 16 THR 16 A THR 17 n 17 THR 17 A THR 18 n 18 THR 18 A GLU 19 n 19 GLU 19 A ALA 20 n 20 ALA 20 A VAL 21 n 21 VAL 21 A ASP 22 n 22 ASP 22 A ALA 23 n 23 ALA 23 A ALA 24 n 24 ALA 24 A THR 25 n 25 THR 25 A ALA 26 n 26 ALA 26 A GLU 27 n 27 GLU 27 A LYS 28 n 28 LYS 28 A VAL 29 n 29 VAL 29 A LEU 30 n 30 LEU 30 A LYS 31 n 31 LYS 31 A GLN 32 n 32 GLN 32 A TYR 33 n 33 TYR 33 A ILE 34 n 34 ILE 34 A ASN 35 n 35 ASN 35 A ASP 36 n 36 ASP 36 A ASN 37 n 37 ASN 37 A GLY 38 n 38 GLY 38 A ILE 39 n 39 ILE 39 A ASP 40 n 40 ASP 40 A GLY 41 n 41 GLY 41 A GLU 42 n 42 GLU 42 A TRP 43 n 43 TRP 43 A THR 44 n 44 THR 44 A TYR 45 n 45 TYR 45 A ASP 46 n 46 ASP 46 A ASP 47 n 47 ASP 47 A ALA 48 n 48 ALA 48 A THR 49 n 49 THR 49 A LYS 50 n 50 LYS 50 A THR 51 n 51 THR 51 A TRP 52 n 52 TRP 52 A THR 53 n 53 THR 53 A VAL 54 n 54 VAL 54 A THR 55 n 55 THR 55 A GLU 56 n 56 GLU 56 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 18 A O THR 18 A N PHE 3 A N PHE 3 A N ASN 8 A N ASN 8 A O VAL 54 A O VAL 54 6 A A O HG1 THR THR 44 53 1.53 14 A A O HG1 THR THR 44 53 1.53 38 A A OG1 HZ1 THR LYS 1 50 1.59 1 A ASN 8 -109.63 52.09 1 A ILE 39 -115.60 73.11 1 A ALA 48 -56.78 -72.48 1 A VAL 54 -171.62 88.15 2 A ASN 8 -113.79 53.30 2 A ALA 48 -56.76 -72.38 2 A VAL 54 -172.47 88.24 3 A ASN 8 -110.85 52.93 3 A ILE 39 -111.91 69.38 3 A ALA 48 -54.34 -70.14 3 A VAL 54 -172.45 90.15 4 A ASN 8 -110.39 54.28 4 A THR 11 -134.37 -43.70 4 A ILE 39 -115.92 73.20 4 A ALA 48 -55.09 -70.91 4 A VAL 54 -170.57 86.95 5 A ASN 8 -110.64 50.91 5 A ILE 39 -115.46 68.50 5 A ALA 48 -56.94 -71.30 5 A VAL 54 -171.38 87.62 6 A ASN 8 -110.05 51.35 6 A ALA 48 -56.11 -71.36 6 A VAL 54 -177.00 74.26 7 A ASN 8 -109.98 53.09 7 A ILE 39 -113.66 73.07 7 A ALA 48 -56.88 -73.50 7 A VAL 54 -171.99 87.37 8 A ASN 8 -107.30 51.60 8 A ILE 39 -114.47 72.51 8 A ALA 48 -58.95 -72.15 8 A VAL 54 -171.48 78.34 9 A ASN 8 -100.57 51.77 9 A ILE 39 -113.42 74.19 9 A ALA 48 -54.75 -70.10 9 A VAL 54 -170.86 78.97 10 A ASN 8 -107.31 51.66 10 A ILE 39 -116.94 67.69 10 A ALA 48 -57.48 -73.09 10 A VAL 54 -171.93 80.31 11 A ASN 8 -109.25 53.41 11 A ILE 39 -115.68 70.93 11 A ALA 48 -58.84 -72.63 11 A VAL 54 -170.60 91.29 12 A ASN 8 -116.18 52.82 12 A ILE 39 -117.22 73.99 12 A ALA 48 -56.62 -71.00 12 A VAL 54 -170.31 83.87 13 A ASN 8 -116.33 53.10 13 A ALA 48 -56.69 -72.01 13 A VAL 54 -170.28 83.60 14 A ASN 8 -110.75 52.90 14 A ALA 48 -57.03 -72.31 14 A VAL 54 -177.79 78.66 15 A ASN 8 -116.75 52.99 15 A THR 11 -133.68 -43.43 15 A ILE 39 -116.43 75.01 15 A THR 49 -146.33 44.97 15 A LYS 50 38.72 46.12 15 A VAL 54 -169.72 84.20 16 A ASN 8 -116.90 52.49 16 A THR 11 -132.50 -43.07 16 A ILE 39 -114.38 76.40 16 A ALA 48 -57.38 -70.87 16 A VAL 54 -168.52 79.80 17 A ASN 8 -105.95 51.95 17 A VAL 54 -172.31 80.97 18 A ASN 8 -117.03 52.33 18 A ILE 39 -110.49 72.44 18 A THR 49 -154.34 23.45 18 A VAL 54 -172.36 85.25 19 A ASN 8 -114.30 53.82 19 A THR 49 -152.31 29.21 19 A LYS 50 38.26 31.89 19 A VAL 54 -176.12 86.83 20 A ASN 8 -104.21 52.80 20 A ILE 39 -119.26 75.12 20 A ALA 48 -55.94 -70.37 20 A VAL 54 -170.96 79.39 21 A ILE 39 -113.99 75.71 21 A ALA 48 -56.03 -70.34 21 A VAL 54 -171.26 90.30 22 A ASN 8 -114.92 53.07 22 A ILE 39 -117.67 74.77 22 A VAL 54 -170.93 81.87 23 A ASN 8 -109.56 54.02 23 A GLU 27 -39.88 -35.72 23 A ALA 48 -55.53 -72.26 23 A VAL 54 -177.59 85.34 24 A ASN 8 -117.06 52.39 24 A THR 44 62.49 131.83 24 A THR 49 -158.22 29.15 24 A VAL 54 -175.10 83.03 25 A ASN 8 -113.16 51.73 25 A ILE 39 -115.01 75.47 25 A ALA 48 -54.75 -70.78 25 A VAL 54 -169.82 82.04 26 A ASN 8 -111.69 51.32 26 A ILE 39 -112.05 73.81 26 A ALA 48 -57.27 -70.55 26 A VAL 54 -172.49 80.09 27 A ASN 8 -106.99 53.74 27 A ILE 39 -112.81 76.67 27 A THR 49 -149.76 30.57 27 A VAL 54 -172.91 82.72 28 A ASN 8 -115.78 51.14 28 A ASP 40 -171.61 139.48 28 A ALA 48 -55.22 -72.33 28 A VAL 54 -176.91 72.78 29 A ASN 8 -106.90 51.21 29 A ILE 39 -114.47 73.99 29 A LYS 50 37.42 56.04 29 A VAL 54 -175.79 96.76 30 A ASN 8 -111.40 51.98 30 A ILE 39 -115.90 74.19 30 A ALA 48 -54.99 -70.71 30 A VAL 54 -171.15 82.27 31 A ASN 8 -110.90 52.51 31 A THR 11 -136.92 -43.02 31 A THR 44 62.24 131.22 31 A THR 49 -155.89 32.76 31 A VAL 54 -176.67 81.63 32 A ASN 8 -116.08 53.81 32 A ILE 39 -116.35 72.71 32 A THR 49 -154.44 31.30 32 A LYS 50 35.91 37.58 32 A VAL 54 -169.81 84.80 33 A ASN 8 -111.65 51.45 33 A ILE 39 -116.49 65.84 33 A ALA 48 -56.70 -71.21 33 A VAL 54 -169.20 85.29 34 A ASN 8 -116.48 53.00 34 A ILE 39 -112.97 72.93 34 A LYS 50 38.46 46.59 34 A VAL 54 -169.88 72.48 35 A ASN 8 -115.22 54.80 35 A THR 11 -131.52 -43.14 35 A ILE 39 -117.12 74.89 35 A ALA 48 -58.56 -72.40 35 A VAL 54 -170.17 87.28 36 A ASN 8 -101.24 52.41 36 A THR 49 -151.90 28.64 36 A LYS 50 36.64 54.22 36 A VAL 54 -173.25 91.04 37 A ASN 8 -108.04 52.57 37 A ILE 39 -115.14 71.41 37 A VAL 54 -175.57 93.18 38 A ASN 8 -108.25 51.51 38 A ALA 48 -56.07 -70.42 38 A VAL 54 -171.42 91.59 39 A ASN 8 -102.10 52.25 39 A ILE 39 -117.49 73.26 39 A THR 49 -151.86 31.87 39 A VAL 54 -171.99 94.53 40 A ASN 8 -115.09 53.91 40 A THR 49 -152.50 30.21 40 A LYS 50 39.43 31.10 40 A VAL 54 -176.77 85.88 DELTA1.5: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G 1 N N A ASP 22 A ASP 22 HELX_P A GLY 38 A GLY 38 1 1 17 PROTEIN BINDING Designed Core Mutant, Streptococcal Protein G, PROTEIN BINDING SPG2_STRSG UNP 1 303 P19909 DTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE 302 357 1FCL 1 56 P19909 A 1 1 56 1 ASP engineered mutation THR 1 1FCL A P19909 UNP 302 1 1 TYR engineered mutation PHE 3 1FCL A P19909 UNP 304 3 1 VAL engineered mutation ILE 7 1FCL A P19909 UNP 308 7 1 PHE engineered mutation LEU 30 1FCL A P19909 UNP 331 30 1 ALA engineered mutation ILE 34 1FCL A P19909 UNP 335 34 1 VAL engineered mutation ILE 39 1FCL A P19909 UNP 340 39 1 PHE engineered mutation TRP 52 1FCL A P19909 UNP 353 52 3 anti-parallel parallel A LYS 13 A LYS 13 A THR 18 A THR 18 A PHE 3 A PHE 3 A ASN 8 A ASN 8 A THR 53 A THR 53 A THR 55 A THR 55