0.01408
0.00813
0.00000
0.00000
0.01626
0.00000
0.00000
0.00000
0.00661
0.00000
0.00000
0.00000
Markovic-Housley, Z.
Miglierini, G.
Soldatova, L.
Rizkallah, P.J.
Mueller, U.
Schirmer, T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
71.012
71.012
151.326
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H10 O7
194.139
alpha-D-glucopyranuronic acid
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure Fold.Des.
FODEFH
1263
0969-2126
8
1025
1035
10.1016/S0969-2126(00)00511-6
11080624
Crystal structure of hyaluronidase, a major allergen of bee venom.
2000
NAG B 2 HAS WRONG CHIRALITY AT ATOM C1
GCU B 3 HAS WRONG CHIRALITY AT ATOM C1
GCU B 5 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277
1
IMAGE PLATE
2000-04-10
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
ENRAF-NONIUS FR571
40901.332
HYALURONOGLUCOSAMINIDASE
3.2.1.35
1
man
polymer
952.772
alpha-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid
1
man
branched
18.015
water
132
nat
water
HYALURONIDASE, API M II
no
no
TPDNNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFPALLKDPNGNVVARNGGVPQ
LGNLTKHLQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKY
GQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKMSWLFESEDVLLPSVYLRWNLTSGERVGL
VGGRVKEALRIARQMTTSRKKVLPYYWYKYQDRRDTDLSRADLEATLRKITDLGADGFIIWGSSDDINTKAKCLQFREYL
NNELGPAVKRIALNNNANDRLTVDVSVDQV
TPDNNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFPALLKDPNGNVVARNGGVPQ
LGNLTKHLQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKY
GQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKMSWLFESEDVLLPSVYLRWNLTSGERVGL
VGGRVKEALRIARQMTTSRKKVLPYYWYKYQDRRDTDLSRADLEATLRKITDLGADGFIIWGSSDDINTKAKCLQFREYL
NNELGPAVKRIALNNNANDRLTVDVSVDQV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
honey bee
Apis
cabbage looper
Trichoplusia
sample
7460
Apis mellifera
HIGH-FIVE INSECT CELLS
7111
Trichoplusia ni
PMELBAC A
BACULOVIRUS
1
2.7
54
VAPOR DIFFUSION, HANGING DROP
4.6
PEG 4000, ammonium sulphate, Na acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
pdbx_validate_chiral
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Structure summary
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
1
0
2001-10-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2015-11-25
2
0
2020-07-29
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_comp_id
_pdbx_validate_chiral.auth_seq_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
GCU
405
n
B
GCU
1
NAG
404
n
B
NAG
2
GCU
403
n
B
GCU
3
NAG
402
n
B
NAG
4
GCU
401
n
B
GCU
5
DGlcpAa
a-D-glucopyranuronic acid
a-D-GlcpA
GlcA
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
1FCQ is the same protein without ligand in a different crystal form
1FCU is the same protein without ligand in the same crystal form
RCSB
Y
RCSB
2000-07-19
REL
REL
oligosaccharide
DGlcpAa1-3DGlcpNAcb1-4DGlcpAa1-3DGlcpNAcb1-4DGlcpAa1-ROH
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/2,5,4/[a2122A-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-1-2-1/a4-b1_b3-c1_c4-d1_d3-e1
2
PDB2Glycan
1.1.0
WURCS
[][a-D-GlcpNAc]{[(3+1)][b-D-GlcpA]{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpA]{}}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
GCU
2
1
2
O1
HO4
sing
C1
O3
GCU
NAG
3
2
2
O1
HO3
sing
C1
O4
NAG
GCU
4
3
2
O1
HO4
sing
C1
O3
GCU
NAG
5
4
2
O1
HO3
sing
n
n
n
n
n
HOH
water
WAT
1
3
HOH
HOH
406
A
WAT
2
3
HOH
HOH
407
A
WAT
3
3
HOH
HOH
408
A
WAT
4
3
HOH
HOH
409
A
WAT
5
3
HOH
HOH
410
A
WAT
6
3
HOH
HOH
411
A
WAT
7
3
HOH
HOH
412
A
WAT
8
3
HOH
HOH
413
A
WAT
9
3
HOH
HOH
414
A
WAT
10
3
HOH
HOH
415
A
WAT
11
3
HOH
HOH
416
A
WAT
12
3
HOH
HOH
417
A
WAT
13
3
HOH
HOH
418
A
WAT
14
3
HOH
HOH
419
A
WAT
15
3
HOH
HOH
420
A
WAT
16
3
HOH
HOH
421
A
WAT
17
3
HOH
HOH
422
A
WAT
18
3
HOH
HOH
423
A
WAT
19
3
HOH
HOH
424
A
WAT
20
3
HOH
HOH
425
A
WAT
22
3
HOH
HOH
426
A
WAT
24
3
HOH
HOH
427
A
WAT
25
3
HOH
HOH
428
A
WAT
26
3
HOH
HOH
429
A
WAT
27
3
HOH
HOH
430
A
WAT
28
3
HOH
HOH
431
A
WAT
29
3
HOH
HOH
432
A
WAT
30
3
HOH
HOH
433
A
WAT
32
3
HOH
HOH
434
A
WAT
33
3
HOH
HOH
435
A
WAT
35
3
HOH
HOH
436
A
WAT
36
3
HOH
HOH
437
A
WAT
37
3
HOH
HOH
438
A
WAT
38
3
HOH
HOH
439
A
WAT
39
3
HOH
HOH
440
A
WAT
40
3
HOH
HOH
441
A
WAT
41
3
HOH
HOH
442
A
WAT
42
3
HOH
HOH
443
A
WAT
43
3
HOH
HOH
444
A
WAT
44
3
HOH
HOH
445
A
WAT
45
3
HOH
HOH
446
A
WAT
46
3
HOH
HOH
447
A
WAT
47
3
HOH
HOH
448
A
WAT
49
3
HOH
HOH
449
A
WAT
50
3
HOH
HOH
450
A
WAT
51
3
HOH
HOH
451
A
WAT
53
3
HOH
HOH
452
A
WAT
54
3
HOH
HOH
453
A
WAT
55
3
HOH
HOH
454
A
WAT
58
3
HOH
HOH
455
A
WAT
59
3
HOH
HOH
456
A
WAT
62
3
HOH
HOH
457
A
WAT
63
3
HOH
HOH
458
A
WAT
64
3
HOH
HOH
459
A
WAT
66
3
HOH
HOH
460
A
WAT
67
3
HOH
HOH
461
A
WAT
68
3
HOH
HOH
462
A
WAT
70
3
HOH
HOH
463
A
WAT
72
3
HOH
HOH
464
A
WAT
75
3
HOH
HOH
465
A
WAT
77
3
HOH
HOH
466
A
WAT
79
3
HOH
HOH
467
A
WAT
80
3
HOH
HOH
468
A
WAT
82
3
HOH
HOH
469
A
WAT
83
3
HOH
HOH
470
A
WAT
84
3
HOH
HOH
471
A
WAT
85
3
HOH
HOH
472
A
WAT
88
3
HOH
HOH
473
A
WAT
89
3
HOH
HOH
474
A
WAT
90
3
HOH
HOH
475
A
WAT
91
3
HOH
HOH
476
A
WAT
93
3
HOH
HOH
477
A
WAT
94
3
HOH
HOH
478
A
WAT
97
3
HOH
HOH
479
A
WAT
100
3
HOH
HOH
480
A
WAT
101
3
HOH
HOH
481
A
WAT
102
3
HOH
HOH
482
A
WAT
104
3
HOH
HOH
483
A
WAT
105
3
HOH
HOH
484
A
WAT
107
3
HOH
HOH
485
A
WAT
110
3
HOH
HOH
486
A
WAT
111
3
HOH
HOH
487
A
WAT
112
3
HOH
HOH
488
A
WAT
114
3
HOH
HOH
489
A
WAT
115
3
HOH
HOH
490
A
WAT
117
3
HOH
HOH
491
A
WAT
118
3
HOH
HOH
492
A
WAT
120
3
HOH
HOH
493
A
WAT
122
3
HOH
HOH
494
A
WAT
125
3
HOH
HOH
495
A
WAT
130
3
HOH
HOH
496
A
WAT
131
3
HOH
HOH
497
A
WAT
135
3
HOH
HOH
498
A
WAT
136
3
HOH
HOH
499
A
WAT
138
3
HOH
HOH
500
A
WAT
140
3
HOH
HOH
501
A
WAT
142
3
HOH
HOH
502
A
WAT
144
3
HOH
HOH
503
A
WAT
146
3
HOH
HOH
504
A
WAT
147
3
HOH
HOH
505
A
WAT
148
3
HOH
HOH
506
A
WAT
149
3
HOH
HOH
507
A
WAT
150
3
HOH
HOH
508
A
WAT
152
3
HOH
HOH
509
A
WAT
155
3
HOH
HOH
510
A
WAT
156
3
HOH
HOH
511
A
WAT
159
3
HOH
HOH
512
A
WAT
160
3
HOH
HOH
513
A
WAT
161
3
HOH
HOH
514
A
WAT
162
3
HOH
HOH
515
A
WAT
163
3
HOH
HOH
516
A
WAT
165
3
HOH
HOH
517
A
WAT
167
3
HOH
HOH
518
A
WAT
169
3
HOH
HOH
519
A
WAT
170
3
HOH
HOH
520
A
WAT
171
3
HOH
HOH
521
A
WAT
175
3
HOH
HOH
522
A
WAT
179
3
HOH
HOH
523
A
WAT
180
3
HOH
HOH
524
A
WAT
184
3
HOH
HOH
525
A
WAT
191
3
HOH
HOH
526
A
WAT
193
3
HOH
HOH
527
A
WAT
198
3
HOH
HOH
528
A
WAT
199
3
HOH
HOH
529
A
WAT
200
3
HOH
HOH
530
A
WAT
203
3
HOH
HOH
531
A
WAT
204
3
HOH
HOH
532
A
WAT
209
3
HOH
HOH
533
A
WAT
211
3
HOH
HOH
534
A
WAT
217
3
HOH
HOH
535
A
WAT
221
3
HOH
HOH
536
A
WAT
222
3
HOH
HOH
537
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
GLU
10
n
10
GLU
10
A
PHE
11
n
11
PHE
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
TYR
14
n
14
TYR
14
A
TRP
15
n
15
TRP
15
A
ASN
16
n
16
ASN
16
A
VAL
17
n
17
VAL
17
A
PRO
18
n
18
PRO
18
A
THR
19
n
19
THR
19
A
PHE
20
n
20
PHE
20
A
MET
21
n
21
MET
21
A
CYS
22
n
22
CYS
22
A
HIS
23
n
23
HIS
23
A
LYS
24
n
24
LYS
24
A
TYR
25
n
25
TYR
25
A
GLY
26
n
26
GLY
26
A
LEU
27
n
27
LEU
27
A
ARG
28
n
28
ARG
28
A
PHE
29
n
29
PHE
29
A
GLU
30
n
30
GLU
30
A
GLU
31
n
31
GLU
31
A
VAL
32
n
32
VAL
32
A
SER
33
n
33
SER
33
A
GLU
34
n
34
GLU
34
A
LYS
35
n
35
LYS
35
A
TYR
36
n
36
TYR
36
A
GLY
37
n
37
GLY
37
A
ILE
38
n
38
ILE
38
A
LEU
39
n
39
LEU
39
A
GLN
40
n
40
GLN
40
A
ASN
41
n
41
ASN
41
A
TRP
42
n
42
TRP
42
A
MET
43
n
43
MET
43
A
ASP
44
n
44
ASP
44
A
LYS
45
n
45
LYS
45
A
PHE
46
n
46
PHE
46
A
ARG
47
n
47
ARG
47
A
GLY
48
n
48
GLY
48
A
GLU
49
n
49
GLU
49
A
GLU
50
n
50
GLU
50
A
ILE
51
n
51
ILE
51
A
ALA
52
n
52
ALA
52
A
ILE
53
n
53
ILE
53
A
LEU
54
n
54
LEU
54
A
TYR
55
n
55
TYR
55
A
ASP
56
n
56
ASP
56
A
PRO
57
n
57
PRO
57
A
GLY
58
n
58
GLY
58
A
MET
59
n
59
MET
59
A
PHE
60
n
60
PHE
60
A
PRO
61
n
61
PRO
61
A
ALA
62
n
62
ALA
62
A
LEU
63
n
63
LEU
63
A
LEU
64
n
64
LEU
64
A
LYS
65
n
65
LYS
65
A
ASP
66
n
66
ASP
66
A
PRO
67
n
67
PRO
67
A
ASN
68
n
68
ASN
68
A
GLY
69
n
69
GLY
69
A
ASN
70
n
70
ASN
70
A
VAL
71
n
71
VAL
71
A
VAL
72
n
72
VAL
72
A
ALA
73
n
73
ALA
73
A
ARG
74
n
74
ARG
74
A
ASN
75
n
75
ASN
75
A
GLY
76
n
76
GLY
76
A
GLY
77
n
77
GLY
77
A
VAL
78
n
78
VAL
78
A
PRO
79
n
79
PRO
79
A
GLN
80
n
80
GLN
80
A
LEU
81
n
81
LEU
81
A
GLY
82
n
82
GLY
82
A
ASN
83
n
83
ASN
83
A
LEU
84
n
84
LEU
84
A
THR
85
n
85
THR
85
A
LYS
86
n
86
LYS
86
A
HIS
87
n
87
HIS
87
A
LEU
88
n
88
LEU
88
A
GLN
89
n
89
GLN
89
A
VAL
90
n
90
VAL
90
A
PHE
91
n
91
PHE
91
A
ARG
92
n
92
ARG
92
A
ASP
93
n
93
ASP
93
A
HIS
94
n
94
HIS
94
A
LEU
95
n
95
LEU
95
A
ILE
96
n
96
ILE
96
A
ASN
97
n
97
ASN
97
A
GLN
98
n
98
GLN
98
A
ILE
99
n
99
ILE
99
A
PRO
100
n
100
PRO
100
A
ASP
101
n
101
ASP
101
A
LYS
102
n
102
LYS
102
A
SER
103
n
103
SER
103
A
PHE
104
n
104
PHE
104
A
PRO
105
n
105
PRO
105
A
GLY
106
n
106
GLY
106
A
VAL
107
n
107
VAL
107
A
GLY
108
n
108
GLY
108
A
VAL
109
n
109
VAL
109
A
ILE
110
n
110
ILE
110
A
ASP
111
n
111
ASP
111
A
PHE
112
n
112
PHE
112
A
GLU
113
n
113
GLU
113
A
SER
114
n
114
SER
114
A
TRP
115
n
115
TRP
115
A
ARG
116
n
116
ARG
116
A
PRO
117
n
117
PRO
117
A
ILE
118
n
118
ILE
118
A
PHE
119
n
119
PHE
119
A
ARG
120
n
120
ARG
120
A
GLN
121
n
121
GLN
121
A
ASN
122
n
122
ASN
122
A
TRP
123
n
123
TRP
123
A
ALA
124
n
124
ALA
124
A
SER
125
n
125
SER
125
A
LEU
126
n
126
LEU
126
A
GLN
127
n
127
GLN
127
A
PRO
128
n
128
PRO
128
A
TYR
129
n
129
TYR
129
A
LYS
130
n
130
LYS
130
A
LYS
131
n
131
LYS
131
A
LEU
132
n
132
LEU
132
A
SER
133
n
133
SER
133
A
VAL
134
n
134
VAL
134
A
GLU
135
n
135
GLU
135
A
VAL
136
n
136
VAL
136
A
VAL
137
n
137
VAL
137
A
ARG
138
n
138
ARG
138
A
ARG
139
n
139
ARG
139
A
GLU
140
n
140
GLU
140
A
HIS
141
n
141
HIS
141
A
PRO
142
n
142
PRO
142
A
PHE
143
n
143
PHE
143
A
TRP
144
n
144
TRP
144
A
ASP
145
n
145
ASP
145
A
ASP
146
n
146
ASP
146
A
GLN
147
n
147
GLN
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
GLU
150
n
150
GLU
150
A
GLN
151
n
151
GLN
151
A
GLU
152
n
152
GLU
152
A
ALA
153
n
153
ALA
153
A
LYS
154
n
154
LYS
154
A
ARG
155
n
155
ARG
155
A
ARG
156
n
156
ARG
156
A
PHE
157
n
157
PHE
157
A
GLU
158
n
158
GLU
158
A
LYS
159
n
159
LYS
159
A
TYR
160
n
160
TYR
160
A
GLY
161
n
161
GLY
161
A
GLN
162
n
162
GLN
162
A
LEU
163
n
163
LEU
163
A
PHE
164
n
164
PHE
164
A
MET
165
n
165
MET
165
A
GLU
166
n
166
GLU
166
A
GLU
167
n
167
GLU
167
A
THR
168
n
168
THR
168
A
LEU
169
n
169
LEU
169
A
LYS
170
n
170
LYS
170
A
ALA
171
n
171
ALA
171
A
ALA
172
n
172
ALA
172
A
LYS
173
n
173
LYS
173
A
ARG
174
n
174
ARG
174
A
MET
175
n
175
MET
175
A
ARG
176
n
176
ARG
176
A
PRO
177
n
177
PRO
177
A
ALA
178
n
178
ALA
178
A
ALA
179
n
179
ALA
179
A
ASN
180
n
180
ASN
180
A
TRP
181
n
181
TRP
181
A
GLY
182
n
182
GLY
182
A
TYR
183
n
183
TYR
183
A
TYR
184
n
184
TYR
184
A
ALA
185
n
185
ALA
185
A
TYR
186
n
186
TYR
186
A
PRO
187
n
187
PRO
187
A
TYR
188
n
188
TYR
188
A
CYS
189
n
189
CYS
189
A
TYR
190
n
190
TYR
190
A
ASN
191
n
191
ASN
191
A
LEU
192
n
192
LEU
192
A
THR
193
n
193
THR
193
A
PRO
194
n
194
PRO
194
A
ASN
195
n
195
ASN
195
A
GLN
196
n
196
GLN
196
A
PRO
197
n
197
PRO
197
A
SER
198
n
198
SER
198
A
ALA
199
n
199
ALA
199
A
GLN
200
n
200
GLN
200
A
CYS
201
n
201
CYS
201
A
GLU
202
n
202
GLU
202
A
ALA
203
n
203
ALA
203
A
THR
204
n
204
THR
204
A
THR
205
n
205
THR
205
A
MET
206
n
206
MET
206
A
GLN
207
n
207
GLN
207
A
GLU
208
n
208
GLU
208
A
ASN
209
n
209
ASN
209
A
ASP
210
n
210
ASP
210
A
LYS
211
n
211
LYS
211
A
MET
212
n
212
MET
212
A
SER
213
n
213
SER
213
A
TRP
214
n
214
TRP
214
A
LEU
215
n
215
LEU
215
A
PHE
216
n
216
PHE
216
A
GLU
217
n
217
GLU
217
A
SER
218
n
218
SER
218
A
GLU
219
n
219
GLU
219
A
ASP
220
n
220
ASP
220
A
VAL
221
n
221
VAL
221
A
LEU
222
n
222
LEU
222
A
LEU
223
n
223
LEU
223
A
PRO
224
n
224
PRO
224
A
SER
225
n
225
SER
225
A
VAL
226
n
226
VAL
226
A
TYR
227
n
227
TYR
227
A
LEU
228
n
228
LEU
228
A
ARG
229
n
229
ARG
229
A
TRP
230
n
230
TRP
230
A
ASN
231
n
231
ASN
231
A
LEU
232
n
232
LEU
232
A
THR
233
n
233
THR
233
A
SER
234
n
234
SER
234
A
GLY
235
n
235
GLY
235
A
GLU
236
n
236
GLU
236
A
ARG
237
n
237
ARG
237
A
VAL
238
n
238
VAL
238
A
GLY
239
n
239
GLY
239
A
LEU
240
n
240
LEU
240
A
VAL
241
n
241
VAL
241
A
GLY
242
n
242
GLY
242
A
GLY
243
n
243
GLY
243
A
ARG
244
n
244
ARG
244
A
VAL
245
n
245
VAL
245
A
LYS
246
n
246
LYS
246
A
GLU
247
n
247
GLU
247
A
ALA
248
n
248
ALA
248
A
LEU
249
n
249
LEU
249
A
ARG
250
n
250
ARG
250
A
ILE
251
n
251
ILE
251
A
ALA
252
n
252
ALA
252
A
ARG
253
n
253
ARG
253
A
GLN
254
n
254
GLN
254
A
MET
255
n
255
MET
255
A
THR
256
n
256
THR
256
A
THR
257
n
257
THR
257
A
SER
258
n
258
SER
258
A
ARG
259
n
259
ARG
259
A
LYS
260
n
260
LYS
260
A
LYS
261
n
261
LYS
261
A
VAL
262
n
262
VAL
262
A
LEU
263
n
263
LEU
263
A
PRO
264
n
264
PRO
264
A
TYR
265
n
265
TYR
265
A
TYR
266
n
266
TYR
266
A
TRP
267
n
267
TRP
267
A
TYR
268
n
268
TYR
268
A
LYS
269
n
269
LYS
269
A
TYR
270
n
270
TYR
270
A
GLN
271
n
271
GLN
271
A
ASP
272
n
272
ASP
272
A
ARG
273
n
273
ARG
273
A
ARG
274
n
274
ARG
274
A
ASP
275
n
275
ASP
275
A
THR
276
n
276
THR
276
A
ASP
277
n
277
ASP
277
A
LEU
278
n
278
LEU
278
A
SER
279
n
279
SER
279
A
ARG
280
n
280
ARG
280
A
ALA
281
n
281
ALA
281
A
ASP
282
n
282
ASP
282
A
LEU
283
n
283
LEU
283
A
GLU
284
n
284
GLU
284
A
ALA
285
n
285
ALA
285
A
THR
286
n
286
THR
286
A
LEU
287
n
287
LEU
287
A
ARG
288
n
288
ARG
288
A
LYS
289
n
289
LYS
289
A
ILE
290
n
290
ILE
290
A
THR
291
n
291
THR
291
A
ASP
292
n
292
ASP
292
A
LEU
293
n
293
LEU
293
A
GLY
294
n
294
GLY
294
A
ALA
295
n
295
ALA
295
A
ASP
296
n
296
ASP
296
A
GLY
297
n
297
GLY
297
A
PHE
298
n
298
PHE
298
A
ILE
299
n
299
ILE
299
A
ILE
300
n
300
ILE
300
A
TRP
301
n
301
TRP
301
A
GLY
302
n
302
GLY
302
A
SER
303
n
303
SER
303
A
SER
304
n
304
SER
304
A
ASP
305
n
305
ASP
305
A
ASP
306
n
306
ASP
306
A
ILE
307
n
307
ILE
307
A
ASN
308
n
308
ASN
308
A
THR
309
n
309
THR
309
A
LYS
310
n
310
LYS
310
A
ALA
311
n
311
ALA
311
A
LYS
312
n
312
LYS
312
A
CYS
313
n
313
CYS
313
A
LEU
314
n
314
LEU
314
A
GLN
315
n
315
GLN
315
A
PHE
316
n
316
PHE
316
A
ARG
317
n
317
ARG
317
A
GLU
318
n
318
GLU
318
A
TYR
319
n
319
TYR
319
A
LEU
320
n
320
LEU
320
A
ASN
321
n
321
ASN
321
A
ASN
322
n
322
ASN
322
A
GLU
323
n
323
GLU
323
A
LEU
324
n
324
LEU
324
A
GLY
325
n
325
GLY
325
A
PRO
326
n
326
PRO
326
A
ALA
327
n
327
ALA
327
A
VAL
328
n
328
VAL
328
A
LYS
329
n
329
LYS
329
A
ARG
330
n
330
ARG
330
A
ILE
331
n
331
ILE
331
A
ALA
332
n
332
ALA
332
A
LEU
333
n
333
LEU
333
A
n
334
334
A
n
335
335
A
n
336
336
A
n
337
337
A
n
338
338
A
n
339
339
A
n
340
340
A
n
341
341
A
n
342
342
A
n
343
343
A
n
344
344
A
n
345
345
A
n
346
346
A
n
347
347
A
n
348
348
A
n
349
349
A
n
350
350
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
14
A
N
TYR
14
A
O
PHE
298
A
O
PHE
298
A
O
ILE
299
A
O
ILE
299
A
N
TYR
266
A
N
TYR
266
A
N
ALA
52
A
N
ALA
52
A
O
VAL
107
A
O
VAL
107
A
N
GLY
108
A
N
GLY
108
A
O
ASN
180
A
O
ASN
180
A
O
LEU
64
A
O
LEU
64
A
N
VAL
72
A
N
VAL
72
A
N
LEU
222
A
N
LEU
222
A
O
LYS
261
A
O
LYS
261
A
O
TYR
270
A
O
TYR
270
A
N
ARG
273
A
N
ARG
273
1
A
THR
1
A
THR
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
ASN
4
A
ASN
4
1
Y
1
A
ASN
5
A
ASN
5
1
Y
1
A
LYS
6
A
LYS
6
1
Y
1
A
THR
7
A
THR
7
1
Y
1
A
VAL
8
A
VAL
8
1
Y
1
A
ARG
9
A
ARG
9
1
Y
1
A
ASN
334
A
ASN
334
1
Y
1
A
ASN
335
A
ASN
335
1
Y
1
A
ASN
336
A
ASN
336
1
Y
1
A
ALA
337
A
ALA
337
1
Y
1
A
ASN
338
A
ASN
338
1
Y
1
A
ASP
339
A
ASP
339
1
Y
1
A
ARG
340
A
ARG
340
1
Y
1
A
LEU
341
A
LEU
341
1
Y
1
A
THR
342
A
THR
342
1
Y
1
A
VAL
343
A
VAL
343
1
Y
1
A
ASP
344
A
ASP
344
1
Y
1
A
VAL
345
A
VAL
345
1
Y
1
A
SER
346
A
SER
346
1
Y
1
A
VAL
347
A
VAL
347
1
Y
1
A
ASP
348
A
ASP
348
1
Y
1
A
GLN
349
A
GLN
349
1
Y
1
A
VAL
350
A
VAL
350
1
Y
1
B
C1
NAG
2
WRONG HAND
1
B
C1
GCU
3
WRONG HAND
1
B
C1
GCU
5
WRONG HAND
1
A
A
O
N
ALA
LEU
332
333
1.69
1
A
ASP
66
-14.77
1
A
ASP
101
-10.87
1
A
A
C
N
ALA
LEU
332
333
1.08
1
10.67
1.40
123.60
134.27
A
A
A
CD
NE
CZ
ARG
ARG
ARG
28
28
28
N
1
4.22
0.50
120.30
124.52
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
1
6.12
0.90
118.30
124.42
A
A
A
CB
CG
OD2
ASP
ASP
ASP
44
44
44
N
1
-4.05
0.50
120.30
116.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
47
47
47
N
1
-4.83
0.50
120.30
115.47
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
116
116
116
N
1
14.65
1.90
113.70
128.35
A
A
A
CA
CB
CG
TRP
TRP
TRP
123
123
123
N
1
4.00
0.50
120.30
124.30
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
155
155
155
N
1
-3.02
0.50
120.30
117.28
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
155
155
155
N
1
-5.29
0.60
121.00
115.71
A
A
A
CB
CG
CD2
TYR
TYR
TYR
160
160
160
N
1
9.53
1.40
123.60
133.13
A
A
A
CD
NE
CZ
ARG
ARG
ARG
176
176
176
N
1
-3.28
0.50
120.30
117.02
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
176
176
176
N
1
-3.87
0.60
121.00
117.13
A
A
A
CB
CG
CD2
TYR
TYR
TYR
183
183
183
N
1
-4.30
0.50
120.30
116.00
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
229
229
229
N
1
8.47
1.10
119.40
127.87
A
A
A
NH1
CZ
NH2
ARG
ARG
ARG
244
244
244
N
1
-6.87
0.50
120.30
113.43
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
244
244
244
N
1
-4.54
0.50
120.30
115.76
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
250
250
250
N
1
6.98
0.50
120.30
127.28
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
250
250
250
N
1
-13.43
1.90
110.30
96.87
A
A
A
N
CA
CB
THR
THR
THR
256
256
256
N
1
-3.53
0.50
120.30
116.77
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
273
273
273
N
1
14.71
2.10
111.80
126.51
A
A
A
CG
CD
NE
ARG
ARG
ARG
280
280
280
N
1
13.32
2.20
113.40
126.72
A
A
A
CA
CB
CG
ARG
ARG
ARG
288
288
288
N
1
-5.31
0.50
120.30
114.99
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
317
317
317
N
1
23.94
2.20
117.20
141.14
A
A
A
CA
C
N
ALA
ALA
LEU
332
332
333
Y
1
-29.04
1.60
122.70
93.66
A
A
A
O
C
N
ALA
ALA
LEU
332
332
333
Y
1
A
A
CB
CG
GLU
GLU
10
10
0.149
0.019
1.517
1.666
N
1
A
A
C
N
ALA
LEU
332
333
-0.256
0.023
1.336
1.080
Y
1
A
A
OE1
NZ
GLU
LYS
236
261
2.09
1_555
4_455
1
A
ALA
124
41.06
-121.45
1
A
ALA
185
78.26
-4.64
1
A
CYS
189
-140.02
-35.93
1
A
MET
212
-95.68
35.56
1
A
ARG
273
-174.21
56.99
1
A
ILE
307
-142.73
43.82
1
A
GLU
323
-133.53
-67.53
1
A
ILE
331
-75.93
-105.88
1
A
ALA
332
-29.77
-65.98
0.252
0.163
0.18
0.18
2.65
8.
1295
12837
12387
RANDOM
1
0.0
0.0
Engh & Huber
2.65
8.
132
2866
53
0
2681
0.009
0.032
34.4
2.65
30
1FCV
13411
13411
0.0
0.0
0.1
1
7.4
3.7
99.8
0.295
2.65
2.79
1
3.7
99.9
data reduction
MOSFLM
data scaling
SCALA
refinement
REFMAC
data scaling
CCP4
(SCALA)
HYALURONIDASE (E.C. 3.2.1.35)
CRYSTAL STRUCTURE OF BEE VENOM HYALURONIDASE IN COMPLEX WITH HYALURONIC ACID TETRAMER
1
N
N
2
N
N
3
N
N
A
PRO
18
A
PRO
18
HELX_P
A
GLY
26
A
GLY
26
5
1
9
A
GLU
30
A
GLU
30
HELX_P
A
LYS
35
A
LYS
35
1
2
6
A
ASN
41
A
ASN
41
HELX_P
A
LYS
45
A
LYS
45
5
3
5
A
ASN
75
A
ASN
75
HELX_P
A
GLY
77
A
GLY
77
5
4
3
A
VAL
78
A
VAL
78
HELX_P
A
GLY
82
A
GLY
82
5
5
5
A
ASN
83
A
ASN
83
HELX_P
A
ILE
99
A
ILE
99
1
6
17
A
ILE
118
A
ILE
118
HELX_P
A
ASN
122
A
ASN
122
5
7
5
A
TRP
123
A
TRP
123
HELX_P
A
LEU
126
A
LEU
126
5
8
4
A
GLN
127
A
GLN
127
HELX_P
A
HIS
141
A
HIS
141
1
9
15
A
ASP
145
A
ASP
145
HELX_P
A
ARG
176
A
ARG
176
1
10
32
A
GLU
202
A
GLU
202
HELX_P
A
MET
212
A
MET
212
1
11
11
A
MET
212
A
MET
212
HELX_P
A
GLU
219
A
GLU
219
1
12
8
A
THR
233
A
THR
233
HELX_P
A
ARG
253
A
ARG
253
1
13
21
A
SER
279
A
SER
279
HELX_P
A
GLY
294
A
GLY
294
1
14
16
A
SER
303
A
SER
303
HELX_P
A
ILE
307
A
ILE
307
5
15
5
A
THR
309
A
THR
309
HELX_P
A
GLU
323
A
GLU
323
1
16
15
A
GLU
323
A
GLU
323
HELX_P
A
ILE
331
A
ILE
331
1
17
9
disulf
2.054
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
313
A
SG
CYS
313
1_555
disulf
1.993
A
CYS
189
A
SG
CYS
189
1_555
A
CYS
201
A
SG
CYS
201
1_555
covale
1.350
both
B
GCU
1
B
O4
GCU
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.296
both
B
NAG
2
B
O3
NAG
1_555
B
GCU
3
B
C1
GCU
1_555
covale
1.332
both
B
GCU
3
B
O4
GCU
1_555
B
NAG
4
B
C1
NAG
1_555
covale
1.313
both
B
NAG
4
B
O3
NAG
1_555
B
GCU
5
B
C1
GCU
1_555
HYDROLASE
7 stranded TIM barrel, allergen, glycosidase family 56, hyaluronic acid, HYDROLASE
A
TYR
186
A
TYR
186
1
A
PRO
187
A
PRO
187
2.58
HUGA_APIME
UNP
1
33
Q08169
TPDNNKTVREFNVYWNVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFPALLKDPNGNVVARNGGVPQ
LGNLTKHLQVFRDHLINQIPDKSFPGVGVIDFESWRPIFRQNWASLQPYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKY
GQLFMEETLKAAKRMRPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDKMSWLFESEDVLLPSVYLRWNLTSGERVGL
VGGRVKEALRIARQMTTSRKKVLPYYWYKYQDRRDTDLSRADLEATLRKITDLGADGFIIWGSSDDINTKAKCLQFREYL
NNELGPAVKRIALNNNANDRLTVDVSVDQV
33
382
1FCV
1
350
Q08169
A
1
1
350
3
3
2
2
2
parallel
parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
A
ASN
12
A
ASN
12
A
ASN
16
A
ASN
16
A
GLY
297
A
GLY
297
A
TRP
301
A
TRP
301
A
TYR
265
A
TYR
265
A
TRP
267
A
TRP
267
A
ILE
51
A
ILE
51
A
TYR
55
A
TYR
55
A
VAL
107
A
VAL
107
A
ASP
111
A
ASP
111
A
ASN
180
A
ASN
180
A
TYR
183
A
TYR
183
A
ALA
62
A
ALA
62
A
LYS
65
A
LYS
65
A
VAL
71
A
VAL
71
A
ARG
74
A
ARG
74
A
VAL
221
A
VAL
221
A
LEU
222
A
LEU
222
A
LYS
261
A
LYS
261
A
VAL
262
A
VAL
262
A
LYS
269
A
LYS
269
A
TYR
270
A
TYR
270
A
ARG
273
A
ARG
273
A
ASP
277
A
ASP
277
154
P 32 2 1