0.033802 0.000000 0.000000 0.000000 0.018505 0.000000 0.000000 0.000000 0.024866 0.000000 0.000000 0.000000 Yang, X.-L. Robinson, H. Gao, Y.-G. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 29.584 54.038 40.215 C46 H58 N8 O2 S2 819.135 MACROCYCLIC-BIS-9-AMINO-ACRIDINE non-polymer Co 2 58.933 COBALT (II) ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Y 1 N C Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C N 10 N N Y 11 N N Y 12 N C Y 13 N C Y 14 N C Y 15 N C N 16 N C N 17 N C N 18 N C N 19 N N N 20 N C N 21 N C N 22 N C N 23 N C N 24 N N N 25 N C N 26 N C N 27 N C N 28 N C N 29 N S N 30 N C N 31 N C N 32 N N N 33 N C N 34 N O N 35 N C N 36 N C N 37 N C N 38 N O N 39 N N N 40 N C N 41 N C N 42 N S N 43 N C Y 44 N C Y 45 N C Y 46 N C Y 47 N C Y 48 N C Y 49 N C Y 50 N C Y 51 N C Y 52 N C Y 53 N N Y 54 N C Y 55 N C Y 56 N C Y 57 N C N 58 N N N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N CO N 118 N O N 119 N P N 120 N O N 121 N O N 122 N O N 123 N C N 124 R C N 125 N O N 126 S C N 127 N O N 128 N C N 129 R C Y 130 N N Y 131 N C Y 132 N N Y 133 N C Y 134 N C N 135 N N Y 136 N N Y 137 N C Y 138 N N Y 139 N C N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N O N 155 N P N 156 N O N 157 N O N 158 N O N 159 N C N 160 R C N 161 N O N 162 S C N 163 N O N 164 N C N 165 R C N 166 N N N 167 N C N 168 N O N 169 N N N 170 N C N 171 N N N 172 N C N 173 N C N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N O N 189 N P N 190 N O N 191 N O N 192 N O N 193 N C N 194 R C N 195 N O N 196 S C N 197 N O N 198 N C N 199 R C Y 200 N N Y 201 N C Y 202 N N Y 203 N C N 204 N C N 205 N O N 206 N N N 207 N C N 208 N N N 209 N N Y 210 N C N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N O N 226 N P N 227 N O N 228 N O N 229 N O N 230 N C N 231 R C N 232 N O N 233 S C N 234 N O N 235 N C N 236 R C N 237 N N N 238 N C N 239 N O N 240 N N N 241 N C N 242 N O N 243 N C N 244 N C N 245 N C N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N O N 262 N H N 263 N H N 264 N MG Y 1 N doub Y 2 N sing N 3 N sing Y 4 N sing N 5 N sing Y 6 N doub N 7 N sing Y 8 N sing N 9 N sing Y 10 N doub Y 11 N sing N 12 N sing Y 13 N sing N 14 N sing Y 15 N doub N 16 N sing Y 17 N sing N 18 N sing N 19 N sing Y 20 N doub Y 21 N sing N 22 N sing N 23 N sing Y 24 N doub Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing Y 98 N doub Y 99 N sing N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N sing Y 105 N sing N 106 N sing Y 107 N doub Y 108 N sing Y 109 N sing N 110 N sing Y 111 N doub N 112 N sing Y 113 N sing N 114 N sing Y 115 N doub Y 116 N sing N 117 N sing Y 118 N doub Y 119 N sing Y 120 N sing Y 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N sing Y 148 N doub N 149 N sing Y 150 N sing Y 151 N sing Y 152 N doub N 153 N sing Y 154 N doub N 155 N sing N 156 N sing Y 157 N sing Y 158 N doub N 159 N sing Y 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing Y 219 N sing Y 220 N sing Y 221 N doub N 222 N sing Y 223 N sing N 224 N sing Y 225 N doub N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing US Biochemistry BICHAW 0033 0006-2960 39 10950 10957 10.1021/bi001319z 10998231 Binding of a macrocyclic bisacridine and ametantrone to CGTACG involves similar unusual intercalation platforms. 2000 10.2210/pdb1fd5/pdb pdb_00001fd5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 110 1 CCD 1999-08-28 CUSTOM-MADE CCD 2000-02-05 CUSTOM-MADE MAD M x-ray 1 0.7251 1.0 0.9199 1.0 0.9200 1.0 0.8856 1.0 19-ID APS 0.7251, 0.9199, 0.9200,0.8856 SYNCHROTRON APS BEAMLINE 19-ID 19-ID APS SYNCHROTRON APS BEAMLINE 19-ID 1809.217 DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') 2 syn polymer synthetic compound 58.933 COBALT (II) ION 2 syn non-polymer 819.135 MACROCYCLIC-BIS-9-AMINO-ACRIDINE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 74 nat water no no (DC)(DG)(DT)(DA)(DC)(DG) CGTACG A,B polydeoxyribonucleotide n n n n n n 2 2.13 42.17 VAPOR DIFFUSION, SITTING DROP 6.0 MPD, sodium cacodylate buffer, magnesium chloride, cobalt chloride, spermine, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 -10.994 1 19 A 2 B 11 0.218 A_DG2:DC11_B 1 4.846 -0.311 -0.081 -0.109 -1.294 1 20 A 3 B 10 2.890 A_DT3:DA10_B 2 -1.748 0.096 0.189 -0.107 -0.156 1 20 A 4 B 9 -2.017 A_DA4:DT9_B 3 0.704 0.105 -0.045 -0.090 21.847 1 19 A 5 B 8 0.419 A_DC5:DG8_B 4 -2.049 0.307 -0.067 -0.096 3.022 26.652 A A 2 3 10.178 B B 11 10 3.145 4.663 -0.067 -0.408 AA_DG2DT3:DA10DC11_BB 1 -2.284 4.985 26.150 -2.045 -0.424 3.136 37.413 A A 3 4 3.526 B B 10 9 3.182 2.258 -0.057 -0.490 AA_DT3DA4:DT9DA10_BB 2 2.792 -4.358 37.246 -1.051 0.444 2.705 27.447 A A 4 5 9.344 B B 9 8 2.894 4.412 0.896 -0.543 AA_DA4DC5:DG8DT9_BB 3 -1.882 3.987 27.033 -2.081 -2.289 software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site entity pdbx_entity_src_syn repository Initial release Version format compliance Version format compliance Data collection Refinement description Data collection Database references Derived calculations Source and taxonomy Structure summary 1 0 2000-08-07 1 1 2008-04-27 1 2 2011-07-13 1 3 2019-07-24 1 4 2024-02-07 1 5 2024-03-13 _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _entity.details RCSB Y RCSB 2000-07-19 REL REL CO COBALT (II) ION B9A MACROCYCLIC-BIS-9-AMINO-ACRIDINE MG MAGNESIUM ION HOH water synthetic DNA moleclue sample CO5 21 2 CO CO 21 A TMR 13 3 B9A B9A 13 A COS 22 2 CO CO 22 B MG2 23 4 MG MG 23 B HOH 103 5 HOH HOH 103 A HOH 105 5 HOH HOH 105 A HOH 106 5 HOH HOH 106 A HOH 108 5 HOH HOH 108 A HOH 109 5 HOH HOH 109 A HOH 110 5 HOH HOH 110 A HOH 118 5 HOH HOH 118 A HOH 119 5 HOH HOH 119 A HOH 122 5 HOH HOH 122 A HOH 124 5 HOH HOH 124 A HOH 126 5 HOH HOH 126 A HOH 127 5 HOH HOH 127 A HOH 128 5 HOH HOH 128 A HOH 130 5 HOH HOH 130 A HOH 132 5 HOH HOH 132 A HOH 134 5 HOH HOH 134 A HOH 135 5 HOH HOH 135 A HOH 136 5 HOH HOH 136 A HOH 138 5 HOH HOH 138 A HOH 141 5 HOH HOH 141 A HOH 143 5 HOH HOH 143 A HOH 144 5 HOH HOH 144 A HOH 145 5 HOH HOH 145 A HOH 146 5 HOH HOH 146 A HOH 152 5 HOH HOH 152 A HOH 153 5 HOH HOH 153 A HOH 155 5 HOH HOH 155 A HOH 157 5 HOH HOH 157 A HOH 160 5 HOH HOH 160 A HOH 161 5 HOH HOH 161 A HOH 162 5 HOH HOH 162 A HOH 165 5 HOH HOH 165 A HOH 169 5 HOH HOH 169 A CO5 21 5 HOH HOH 174 A CO5 21 5 HOH HOH 175 A CO5 21 5 HOH HOH 176 A CO5 21 5 HOH HOH 177 A CO5 21 5 HOH HOH 178 A HOH 101 5 HOH HOH 101 B HOH 102 5 HOH HOH 102 B HOH 104 5 HOH HOH 104 B HOH 107 5 HOH HOH 107 B HOH 111 5 HOH HOH 111 B HOH 112 5 HOH HOH 112 B HOH 113 5 HOH HOH 113 B HOH 114 5 HOH HOH 114 B HOH 115 5 HOH HOH 115 B HOH 116 5 HOH HOH 116 B HOH 117 5 HOH HOH 117 B HOH 120 5 HOH HOH 120 B HOH 123 5 HOH HOH 123 B HOH 125 5 HOH HOH 125 B HOH 129 5 HOH HOH 129 B HOH 131 5 HOH HOH 131 B HOH 133 5 HOH HOH 133 B HOH 137 5 HOH HOH 137 B HOH 139 5 HOH HOH 139 B HOH 140 5 HOH HOH 140 B HOH 142 5 HOH HOH 142 B HOH 147 5 HOH HOH 147 B HOH 148 5 HOH HOH 148 B HOH 149 5 HOH HOH 149 B HOH 150 5 HOH HOH 150 B HOH 151 5 HOH HOH 151 B HOH 154 5 HOH HOH 154 B HOH 156 5 HOH HOH 156 B HOH 158 5 HOH HOH 158 B HOH 163 5 HOH HOH 163 B HOH 164 5 HOH HOH 164 B HOH 166 5 HOH HOH 166 B COS 22 5 HOH HOH 170 B COS 22 5 HOH HOH 171 B MG2 23 5 HOH HOH 172 B MG2 23 5 HOH HOH 173 B C 1 n 1 DC 1 A G 2 n 2 DG 2 A T 3 n 3 DT 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A C 7 n 1 DC 7 B G 8 n 2 DG 8 B T 9 n 3 DT 9 B A 10 n 4 DA 10 B C 11 n 5 DC 11 B G 12 n 6 DG 12 B author_defined_assembly 2 dimeric A DG 2 A N7 DG 2 1_555 A CO 21 C CO CO 1_555 A HOH 174 G O HOH 1_555 95.6 A DG 2 A N7 DG 2 1_555 A CO 21 C CO CO 1_555 A HOH 175 G O HOH 1_555 89.9 A HOH 174 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 175 G O HOH 1_555 89.6 A DG 2 A N7 DG 2 1_555 A CO 21 C CO CO 1_555 A HOH 176 G O HOH 1_555 94.1 A HOH 174 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 176 G O HOH 1_555 89.0 A HOH 175 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 176 G O HOH 1_555 175.8 A DG 2 A N7 DG 2 1_555 A CO 21 C CO CO 1_555 A HOH 177 G O HOH 1_555 86.0 A HOH 174 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 177 G O HOH 1_555 178.1 A HOH 175 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 177 G O HOH 1_555 89.5 A HOH 176 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 177 G O HOH 1_555 91.8 A DG 2 A N7 DG 2 1_555 A CO 21 C CO CO 1_555 A HOH 178 G O HOH 1_555 175.4 A HOH 174 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 178 G O HOH 1_555 88.7 A HOH 175 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 178 G O HOH 1_555 88.7 A HOH 176 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 178 G O HOH 1_555 87.3 A HOH 177 G O HOH 1_555 A CO 21 C CO CO 1_555 A HOH 178 G O HOH 1_555 89.6 B DG 8 B OP2 DG 2 1_555 B MG 23 F MG MG 1_555 B DG 8 B OP2 DG 2 4_556 97.3 B DG 8 B OP2 DG 2 1_555 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 1_555 88.1 B DG 8 B OP2 DG 2 4_556 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 1_555 173.6 B DG 8 B OP2 DG 2 1_555 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 4_556 173.5 B DG 8 B OP2 DG 2 4_556 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 4_556 88.1 B HOH 172 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 4_556 86.8 B DG 8 B OP2 DG 2 1_555 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 3_656 89.7 B DG 8 B OP2 DG 2 4_556 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 3_656 151.2 B HOH 172 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 3_656 31.6 B HOH 172 H O HOH 4_556 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 3_656 83.9 B DG 8 B OP2 DG 2 1_555 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 2_655 151.3 B DG 8 B OP2 DG 2 4_556 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 2_655 89.7 B HOH 172 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 2_655 83.9 B HOH 172 H O HOH 4_556 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 2_655 31.6 B HOH 172 H O HOH 3_656 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 2_655 97.5 B DG 8 B OP2 DG 2 1_555 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 1_555 98.2 B DG 8 B OP2 DG 2 4_556 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 1_555 81.2 B HOH 172 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 1_555 94.5 B HOH 172 H O HOH 4_556 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 1_555 86.1 B HOH 172 H O HOH 3_656 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 1_555 125.5 B HOH 172 H O HOH 2_655 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 1_555 55.2 B DG 8 B OP2 DG 2 1_555 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 4_556 81.2 B DG 8 B OP2 DG 2 4_556 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 4_556 98.2 B HOH 172 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 4_556 86.1 B HOH 172 H O HOH 4_556 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 4_556 94.5 B HOH 172 H O HOH 3_656 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 4_556 55.2 B HOH 172 H O HOH 2_655 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 4_556 125.5 B HOH 173 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 4_556 179.1 B DG 12 B N7 DG 6 1_555 B CO 22 E CO CO 1_555 B DG 12 B N7 DG 6 3_755 178.7 B DG 12 B N7 DG 6 1_555 B CO 22 E CO CO 1_555 B HOH 170 H O HOH 1_555 86.7 B DG 12 B N7 DG 6 3_755 B CO 22 E CO CO 1_555 B HOH 170 H O HOH 1_555 92.3 B DG 12 B N7 DG 6 1_555 B CO 22 E CO CO 1_555 B HOH 170 H O HOH 3_755 92.3 B DG 12 B N7 DG 6 3_755 B CO 22 E CO CO 1_555 B HOH 170 H O HOH 3_755 86.7 B HOH 170 H O HOH 1_555 B CO 22 E CO CO 1_555 B HOH 170 H O HOH 3_755 85.4 B DG 12 B N7 DG 6 1_555 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 1_555 91.7 B DG 12 B N7 DG 6 3_755 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 1_555 89.1 B HOH 170 H O HOH 1_555 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 1_555 88.4 B HOH 170 H O HOH 3_755 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 1_555 172.3 B DG 12 B N7 DG 6 1_555 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 3_755 89.1 B DG 12 B N7 DG 6 3_755 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 3_755 91.7 B HOH 170 H O HOH 1_555 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 3_755 172.3 B HOH 170 H O HOH 3_755 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 3_755 88.4 B HOH 171 H O HOH 1_555 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 3_755 98.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B CO 22 E CO 1 B MG 23 F MG 1 A HOH 134 G HOH 1 B HOH 102 H HOH 1 B HOH 149 H HOH 1 B HOH 158 H HOH 1 A O5' DC 1 A O5' DC 1 1 Y 1 A C5' DC 1 A C5' DC 1 1 Y 1 A C4' DC 1 A C4' DC 1 1 Y 1 A O4' DC 1 A O4' DC 1 1 Y 1 A C3' DC 1 A C3' DC 1 1 Y 1 A C2' DC 1 A C2' DC 1 1 Y 1 A C1' DC 1 A C1' DC 1 1 Y 1 A N1 DC 1 A N1 DC 1 1 Y 1 A C2 DC 1 A C2 DC 1 1 Y 1 A O2 DC 1 A O2 DC 1 1 Y 1 A N3 DC 1 A N3 DC 1 1 Y 1 A C4 DC 1 A C4 DC 1 1 Y 1 A N4 DC 1 A N4 DC 1 1 Y 1 A C5 DC 1 A C5 DC 1 1 Y 1 A C6 DC 1 A C6 DC 1 1 Y 1 A C16 B9A 13 D C16 B9A 1 1 N 1 A C17 B9A 13 D C17 B9A 1 1 N 1 A N18 B9A 13 D N18 B9A 1 1 N 1 A C19 B9A 13 D C19 B9A 1 1 N 1 A C20 B9A 13 D C20 B9A 1 1 N 1 A C21 B9A 13 D C21 B9A 1 1 N 1 A C22 B9A 13 D C22 B9A 1 1 N 1 A N23 B9A 13 D N23 B9A 1 1 N 1 A C24 B9A 13 D C24 B9A 1 1 N 1 A C25 B9A 13 D C25 B9A 1 1 N 1 A C26 B9A 13 D C26 B9A 1 1 N 1 A C28 B9A 13 D C28 B9A 1 1 N 1 A S29 B9A 13 D S29 B9A 1 1 N 1 A C30 B9A 13 D C30 B9A 1 1 N 1 A C31 B9A 13 D C31 B9A 1 1 N 1 A N32 B9A 13 D N32 B9A 1 1 N 1 A C33 B9A 13 D C33 B9A 1 1 N 1 A O34 B9A 13 D O34 B9A 1 1 N 1 A C35 B9A 13 D C35 B9A 1 1 N 1 A C36 B9A 13 D C36 B9A 1 1 N 1 A C37 B9A 13 D C37 B9A 1 1 N 1 A O38 B9A 13 D O38 B9A 1 1 N 1 A N39 B9A 13 D N39 B9A 1 1 N 1 A C40 B9A 13 D C40 B9A 1 1 N 1 A C41 B9A 13 D C41 B9A 1 1 N 1 A S42 B9A 13 D S42 B9A 1 1 N 1 A C43 B9A 13 D C43 B9A 1 1 N 1 A C1B B9A 13 D C1B B9A 1 1 N 1 A C2B B9A 13 D C2B B9A 1 1 N 1 A C3B B9A 13 D C3B B9A 1 1 N 1 A C4B B9A 13 D C4B B9A 1 1 N 1 A C5B B9A 13 D C5B B9A 1 1 N 1 A C6B B9A 13 D C6B B9A 1 1 N 1 A C7B B9A 13 D C7B B9A 1 1 N 1 A C8B B9A 13 D C8B B9A 1 1 N 1 A C9B B9A 13 D C9B B9A 1 1 N 1 A NAB B9A 13 D NAB B9A 1 1 N 1 A CBB B9A 13 D CBB B9A 1 1 N 1 A CCB B9A 13 D CCB B9A 1 1 N 1 A CDB B9A 13 D CDB B9A 1 1 N 1 A CEB B9A 13 D CEB B9A 1 1 N 1 A N9B B9A 13 D N9B B9A 1 1 N 1 B DG 8 0.067 SIDE CHAIN 1 B DG 12 0.064 SIDE CHAIN 1 -4.95 0.50 129.30 124.35 A A A N1 C2 N3 DA DA DA 4 4 4 N 1 3.62 0.50 110.60 114.22 A A A C2 N3 C4 DA DA DA 4 4 4 N 1 -5.37 0.80 109.40 104.03 A A A O5' C5' C4' DG DG DG 6 6 6 N 1 -4.20 0.70 119.90 115.70 A A A N3 C2 N2 DG DG DG 6 6 6 N 1 -5.45 0.70 108.00 102.55 B B B O4' C1' N1 DC DC DC 7 7 7 N 1 3.09 0.50 103.90 106.99 B B B C5 N7 C8 DA DA DA 10 10 10 N 1 -3.42 0.50 113.80 110.38 B B B N7 C8 N9 DA DA DA 10 10 10 N 1 2.24 0.30 108.30 110.54 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 -3.95 0.60 119.90 115.95 B B B N1 C6 O6 DG DG DG 12 12 12 N 0.2030000 0.1630000 0.1680000 1.1 10 544 12702 10911 random 1 4 2 G.PARKINSON, J.VOJTECHOVSKY, L.CLOWNEY, A.T.BRUNGER, H.M.BERMAN 1.1 10 65 318 28 225 0 0.014 2.0 23.0 1.1 100 1FD5 196823 196823 0 0 0.0570000 1 40.5 9.4 99.9 0.5970000 1.10 1.14 1293 7.2 100 refinement SHELXL-97 refinement CNS data reduction d*TREK data scaling HKL-2000 phasing CNS BINDING OF A MACROCYCLIC BISACRIDINE AND AMETANTRONE TO CGTACG INVOLVES SIMILAR UNUSUAL INTERCALATION PLATFORMS (BISACRIDINE COMPLEX) 1 N N 1 N N 2 N N 3 N N 2 N N 4 N N 5 N N 5 N N metalc 2.124 A DG 2 A N7 DG 2 1_555 A CO 21 C CO CO 1_555 metalc 1.997 A CO 21 C CO CO 1_555 A HOH 174 G O HOH 1_555 metalc 2.034 A CO 21 C CO CO 1_555 A HOH 175 G O HOH 1_555 metalc 1.995 A CO 21 C CO CO 1_555 A HOH 176 G O HOH 1_555 metalc 2.024 A CO 21 C CO CO 1_555 A HOH 177 G O HOH 1_555 metalc 2.005 A CO 21 C CO CO 1_555 A HOH 178 G O HOH 1_555 metalc 2.096 B DG 8 B OP2 DG 2 1_555 B MG 23 F MG MG 1_555 metalc 2.096 B DG 8 B OP2 DG 2 4_556 B MG 23 F MG MG 1_555 metalc 2.173 B DG 12 B N7 DG 6 1_555 B CO 22 E CO CO 1_555 metalc 2.173 B DG 12 B N7 DG 6 3_755 B CO 22 E CO CO 1_555 metalc 2.089 B CO 22 E CO CO 1_555 B HOH 170 H O HOH 1_555 metalc 2.089 B CO 22 E CO CO 1_555 B HOH 170 H O HOH 3_755 metalc 2.022 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 1_555 metalc 2.022 B CO 22 E CO CO 1_555 B HOH 171 H O HOH 3_755 metalc 2.041 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 1_555 metalc 2.041 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 4_556 metalc 1.865 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 3_656 metalc 1.865 B MG 23 F MG MG 1_555 B HOH 172 H O HOH 2_655 metalc 2.049 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 1_555 metalc 2.050 B MG 23 F MG MG 1_555 B HOH 173 H O HOH 4_556 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 11 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 11 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 11 B N4 DC 5 1_555 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 B DA 10 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 B DA 10 B N6 DA 4 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 9 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 9 B O4 DT 3 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 8 B N2 DG 2 1_555 DNA High resolution crystal structure, intercalation platform, MAD, anticancer drug, drug-DNA complex, metal ions, tertiary base pairs, DNA 1FD5 PDB 1 1FD5 1 6 1FD5 1 6 1FD5 A 1 1 6 7 12 1FD5 7 12 1FD5 B 1 1 6 BINDING SITE FOR RESIDUE CO B 22 B CO 22 Software 6 BINDING SITE FOR RESIDUE MG B 23 B MG 23 Software 8 BINDING SITE FOR RESIDUE CO A 21 A CO 21 Software 6 BINDING SITE FOR RESIDUE B9A A 13 A B9A 13 Software 4 B DG 12 B DG 6 6 3_755 B DG 12 B DG 6 6 1_555 B HOH 170 H HOH 6 3_755 B HOH 170 H HOH 6 1_555 B HOH 171 H HOH 6 3_755 B HOH 171 H HOH 6 1_555 B DG 8 B DG 2 8 4_556 B DG 8 B DG 2 8 1_555 B HOH 172 H HOH 8 1_555 B HOH 172 H HOH 8 3_656 B HOH 172 H HOH 8 2_655 B HOH 172 H HOH 8 4_556 B HOH 173 H HOH 8 4_556 B HOH 173 H HOH 8 1_555 A DG 2 A DG 2 6 1_555 A HOH 174 G HOH 6 1_555 A HOH 175 G HOH 6 1_555 A HOH 176 G HOH 6 1_555 A HOH 177 G HOH 6 1_555 A HOH 178 G HOH 6 1_555 A DC 5 A DC 5 4 1_555 A DG 6 A DG 6 4 1_555 B DC 7 B DC 1 4 3_656 B DG 8 B DG 2 4 1_555 21 C 2 2 2