1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ross, S.A.
Sarisky, C.A.
Su, A.
Mayo, S.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
10
450
454
10.1110/ps.32501
11266631
Designed protein G core variants fold to native-like structures: sequence selection by ORBIT tolerates variation in backbone specification.
2001
10.2210/pdb1fd6/pdb
pdb_00001fd6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
6300.914
IMMUNOGLOBULIN G BINDING PROTEIN G
GB1_DELT0
Y3F, L7I, V39I
1
man
polymer
IGG BINDING PROTEIN G
no
no
MTTFKLIINGKTLKGETTTEAVDAATAEKVFKQYANDNGIDGEWTYDDATKTFTVTE
MTTFKLIINGKTLKGETTTEAVDAATAEKVFKQYANDNGIDGEWTYDDATKTFTVTE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptococcus
Escherichia
sample
1306
Streptococcus sp.
562
Escherichia coli
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2001-09-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
DELTA1.5: A Computationally Designed Core Variant of the B1 Domain of Streptococcal Protein G
Protein G (B1 Domain)
HYPERTHERMOPHILIC VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G
RCSB
Y
RCSB
2000-07-19
REL
REL
structures with the least restraint violations,structures with the lowest energy
100
40
2D NOESY
DQF-COSY
E-COSY
TOCSY
50 mM sodium phosphate
6.0
ambient
298
K
Distance Geometry and Simulated Annealing
1
lowest energy
3 mM protein in 50 mM sodium phosphate, pH 6.0
either D2O or 90:10 H2O:D2O
Varian Associates
collection
VNMR
5.2f, 5.3b, 6.1b
P. Kraulis
processing
ANSIG
3.3
Brunger
structure solution
X-PLOR
3.1
Brunger
refinement
X-PLOR
3.1
600
Varian
UNITYPLUS
MET
1
n
1
MET
1
A
THR
2
n
2
THR
2
A
THR
3
n
3
THR
3
A
PHE
4
n
4
PHE
4
A
LYS
5
n
5
LYS
5
A
LEU
6
n
6
LEU
6
A
ILE
7
n
7
ILE
7
A
ILE
8
n
8
ILE
8
A
ASN
9
n
9
ASN
9
A
GLY
10
n
10
GLY
10
A
LYS
11
n
11
LYS
11
A
THR
12
n
12
THR
12
A
LEU
13
n
13
LEU
13
A
LYS
14
n
14
LYS
14
A
GLY
15
n
15
GLY
15
A
GLU
16
n
16
GLU
16
A
THR
17
n
17
THR
17
A
THR
18
n
18
THR
18
A
THR
19
n
19
THR
19
A
GLU
20
n
20
GLU
20
A
ALA
21
n
21
ALA
21
A
VAL
22
n
22
VAL
22
A
ASP
23
n
23
ASP
23
A
ALA
24
n
24
ALA
24
A
ALA
25
n
25
ALA
25
A
THR
26
n
26
THR
26
A
ALA
27
n
27
ALA
27
A
GLU
28
n
28
GLU
28
A
LYS
29
n
29
LYS
29
A
VAL
30
n
30
VAL
30
A
PHE
31
n
31
PHE
31
A
LYS
32
n
32
LYS
32
A
GLN
33
n
33
GLN
33
A
TYR
34
n
34
TYR
34
A
ALA
35
n
35
ALA
35
A
ASN
36
n
36
ASN
36
A
ASP
37
n
37
ASP
37
A
ASN
38
n
38
ASN
38
A
GLY
39
n
39
GLY
39
A
ILE
40
n
40
ILE
40
A
ASP
41
n
41
ASP
41
A
GLY
42
n
42
GLY
42
A
GLU
43
n
43
GLU
43
A
TRP
44
n
44
TRP
44
A
THR
45
n
45
THR
45
A
TYR
46
n
46
TYR
46
A
ASP
47
n
47
ASP
47
A
ASP
48
n
48
ASP
48
A
ALA
49
n
49
ALA
49
A
THR
50
n
50
THR
50
A
LYS
51
n
51
LYS
51
A
THR
52
n
52
THR
52
A
PHE
53
n
53
PHE
53
A
THR
54
n
54
THR
54
A
VAL
55
n
55
VAL
55
A
THR
56
n
56
THR
56
A
GLU
57
n
57
GLU
57
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
6
A
N
LEU
6
A
O
THR
17
A
O
THR
17
1
A
ASN
9
-95.38
49.19
1
A
ILE
40
-105.59
71.32
1
A
ASP
41
-95.40
46.05
1
A
THR
50
-141.31
18.70
1
A
LYS
51
50.31
90.35
1
A
THR
56
-160.26
108.10
2
A
ASN
9
-96.15
47.25
2
A
ASP
23
-170.86
-177.85
2
A
ASP
41
-98.76
37.67
2
A
THR
50
-147.79
19.04
2
A
LYS
51
51.60
94.56
2
A
THR
56
-160.79
112.26
3
A
ASN
9
-95.82
47.79
3
A
ILE
40
-118.72
73.56
3
A
ASP
41
-95.64
43.20
3
A
THR
50
-147.59
25.11
3
A
LYS
51
52.44
89.87
4
A
ASN
9
-97.65
47.80
4
A
ASP
23
-172.35
-177.92
4
A
ILE
40
-104.53
62.84
4
A
THR
50
-147.70
20.72
4
A
LYS
51
51.65
89.60
4
A
THR
56
-160.30
110.75
5
A
ASN
9
-98.01
45.99
5
A
ASP
23
-171.01
-178.24
5
A
ILE
40
-118.04
63.39
5
A
THR
50
-145.06
18.43
5
A
LYS
51
51.24
92.71
5
A
THR
56
-160.80
109.05
6
A
ASN
9
-95.57
47.95
6
A
ILE
40
-117.65
75.47
6
A
ASP
41
-98.36
39.95
6
A
THR
50
-147.15
17.67
6
A
LYS
51
50.55
87.00
6
A
THR
56
-160.64
109.38
7
A
ASN
9
-96.11
48.91
7
A
ILE
40
-110.64
61.23
7
A
THR
50
-142.75
13.34
7
A
LYS
51
50.08
90.74
7
A
THR
56
-162.31
114.49
8
A
ASN
9
-96.58
47.58
8
A
THR
50
-144.90
18.21
8
A
LYS
51
51.31
93.19
8
A
THR
56
-160.80
108.04
9
A
ASN
9
-96.93
49.18
9
A
ILE
40
-119.07
74.58
9
A
ASP
41
-97.78
39.69
9
A
THR
50
-147.65
21.12
9
A
LYS
51
50.27
90.83
9
A
THR
56
-160.84
109.99
10
A
ASN
9
-96.17
46.81
10
A
ASP
23
-175.24
-179.03
10
A
ILE
40
-115.80
62.91
10
A
THR
50
-148.14
22.75
10
A
LYS
51
51.30
91.32
10
A
THR
56
-162.24
119.37
11
A
ASN
9
-95.13
47.58
11
A
ILE
40
-99.64
59.52
11
A
THR
50
-141.77
12.86
11
A
LYS
51
50.95
94.41
11
A
THR
56
-160.28
109.20
12
A
ASN
9
-95.86
47.73
12
A
ASP
23
-172.47
-179.56
12
A
ILE
40
-115.79
74.64
12
A
ASP
41
-98.25
39.54
12
A
THR
50
-147.14
22.92
12
A
LYS
51
51.67
94.69
12
A
THR
56
-160.19
109.42
13
A
ASN
9
-96.64
47.20
13
A
ASP
23
-170.67
-179.65
13
A
THR
50
-147.49
24.33
13
A
LYS
51
51.69
93.45
13
A
THR
56
-160.52
110.12
14
A
ASN
9
-98.83
48.93
14
A
ASP
41
-98.97
39.70
14
A
THR
50
-147.47
23.02
14
A
LYS
51
52.51
88.99
14
A
THR
56
-160.58
111.62
15
A
ASN
9
-95.60
48.47
15
A
ASP
23
-173.12
-178.24
15
A
ILE
40
-108.79
77.03
15
A
ASP
41
-98.99
39.28
15
A
THR
50
-147.07
24.12
15
A
LYS
51
51.79
87.35
16
A
ASN
9
-96.68
47.59
16
A
ILE
40
-104.21
69.05
16
A
ASP
41
-92.23
49.35
16
A
THR
50
-143.26
14.71
16
A
LYS
51
50.92
87.12
16
A
THR
56
-163.91
116.11
17
A
ASN
9
-95.43
48.07
17
A
ASP
23
-172.34
-172.49
17
A
ASP
41
-95.39
43.95
17
A
THR
50
-148.47
20.11
17
A
LYS
51
51.52
85.89
18
A
ASN
9
-97.30
46.91
18
A
ASP
23
-173.87
-176.45
18
A
THR
50
-144.98
16.46
18
A
LYS
51
50.81
89.56
18
A
THR
56
-160.71
112.65
19
A
ASN
9
-97.24
46.93
19
A
ASP
23
-172.66
-173.27
19
A
THR
50
-147.68
19.89
19
A
LYS
51
50.63
85.38
19
A
THR
56
-161.67
111.06
20
A
ASN
9
-93.94
50.55
20
A
ALA
27
-63.25
-178.80
20
A
GLU
28
66.36
-63.01
20
A
THR
50
-144.83
17.19
20
A
LYS
51
51.27
91.61
20
A
THR
56
-160.92
115.09
21
A
ASN
9
-95.70
47.35
21
A
ILE
40
-119.97
70.32
21
A
ASP
41
-94.55
48.82
21
A
THR
50
-148.82
21.04
21
A
LYS
51
52.54
92.74
22
A
ASN
9
-93.62
49.17
22
A
ALA
27
-62.26
-176.93
22
A
GLU
28
66.63
-61.73
22
A
THR
50
-144.34
14.51
22
A
LYS
51
50.97
86.72
22
A
THR
56
-160.78
108.84
23
A
ASN
9
-95.17
46.79
23
A
ASP
41
-97.76
40.70
23
A
THR
50
-148.61
22.18
23
A
LYS
51
50.88
90.75
23
A
THR
56
-163.49
115.34
24
A
ASN
9
-94.37
49.55
24
A
THR
50
-147.81
17.71
24
A
LYS
51
50.26
93.06
24
A
THR
56
-161.12
112.33
25
A
ASN
9
-95.56
48.00
25
A
THR
50
-147.55
19.51
25
A
LYS
51
51.68
96.25
25
A
THR
56
-160.04
109.70
26
A
ASN
9
-95.12
47.70
26
A
THR
50
-148.18
18.56
26
A
LYS
51
51.30
94.97
26
A
THR
56
-160.35
111.07
27
A
ASN
9
-95.23
47.17
27
A
ASP
23
-173.07
-174.94
27
A
THR
50
-147.06
17.37
27
A
LYS
51
49.87
86.67
28
A
ASN
9
-95.87
47.82
28
A
ASP
23
-171.24
-170.79
28
A
ILE
40
-103.40
62.70
28
A
THR
50
-144.90
15.66
28
A
LYS
51
50.30
90.34
28
A
THR
56
-160.65
109.89
29
A
ASN
9
-97.12
49.58
29
A
ILE
40
-103.64
62.43
29
A
THR
50
-148.16
18.41
29
A
LYS
51
50.72
93.14
29
A
THR
56
-160.72
110.02
30
A
ASN
9
-96.07
47.13
30
A
ILE
40
-115.44
59.70
30
A
THR
50
-148.84
20.28
30
A
LYS
51
52.10
93.46
30
A
THR
56
-160.20
108.90
31
A
ASN
9
-95.72
49.33
31
A
ILE
40
-116.05
59.82
31
A
THR
50
-146.84
21.75
31
A
LYS
51
52.31
95.32
31
A
THR
56
-161.39
111.42
32
A
ASN
9
-97.01
45.20
32
A
ASP
23
-170.35
-174.21
32
A
ILE
40
-103.13
63.03
32
A
THR
50
-148.14
21.84
32
A
LYS
51
51.56
91.36
32
A
THR
56
-160.70
111.01
33
A
ASN
9
-94.18
48.15
33
A
ASP
23
-170.81
-168.38
33
A
THR
50
-145.93
16.83
33
A
LYS
51
51.13
93.06
33
A
THR
56
-162.33
117.02
34
A
ASN
9
-96.16
46.46
34
A
ASP
23
-170.04
-179.36
34
A
THR
50
-148.45
27.82
34
A
LYS
51
52.52
96.80
34
A
THR
56
-161.65
112.34
35
A
ASN
9
-96.13
47.33
35
A
ILE
40
-116.26
58.52
35
A
THR
50
-145.77
19.22
35
A
LYS
51
51.88
95.65
35
A
THR
56
-161.61
116.37
36
A
ASN
9
-93.59
50.12
36
A
ILE
40
-109.22
61.24
36
A
THR
50
-146.88
17.15
36
A
LYS
51
50.88
93.33
36
A
THR
56
-161.88
111.89
37
A
ASN
9
-94.68
48.30
37
A
THR
19
-161.98
-168.59
37
A
ILE
40
-107.52
61.18
37
A
THR
50
-145.76
18.00
37
A
LYS
51
52.15
96.22
38
A
ASP
23
-175.26
-175.35
38
A
ILE
40
-100.09
69.40
38
A
ASP
41
-92.08
51.50
38
A
THR
50
-145.40
15.48
38
A
LYS
51
51.01
82.24
38
A
THR
56
-160.62
110.53
39
A
ASN
9
-95.90
48.30
39
A
ASP
23
-174.73
-173.67
39
A
ILE
40
-104.50
59.09
39
A
THR
50
-147.20
16.86
39
A
LYS
51
52.36
95.85
39
A
THR
56
-162.54
117.08
40
A
ASN
9
-96.28
49.73
40
A
ASP
23
-172.93
-170.20
40
A
ILE
40
-115.15
67.92
40
A
ASP
41
-90.83
51.88
40
A
THR
50
-147.37
23.81
40
A
LYS
51
52.42
95.38
DELTA0: A COMPUTATIONALLY DESIGNED CORE VARIANT OF THE B1 DOMAIN OF STREPTOCOCCAL PROTEIN G
1
N
N
A
ASP
23
A
ASP
23
HELX_P
A
GLY
39
A
GLY
39
1
1
17
PROTEIN BINDING
Streptococcal Protein G, Protein Design, Backbone Design, Core Sidechain Packing, PROTEIN BINDING
SPG2_STRSG
UNP
1
302
P19909
DTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE
302
357
1FD6
2
57
P19909
A
1
2
57
1
initiating methionine
MET
1
1FD6
A
P19909
UNP
1
1
ASP
engineered mutation
THR
2
1FD6
A
P19909
UNP
302
2
1
TYR
engineered mutation
PHE
4
1FD6
A
P19909
UNP
304
4
1
LEU
engineered mutation
ILE
8
1FD6
A
P19909
UNP
308
8
1
VAL
engineered mutation
ILE
40
1FD6
A
P19909
UNP
340
40
2
anti-parallel
A
LYS
5
A
LYS
5
A
ILE
7
A
ILE
7
A
GLU
16
A
GLU
16
A
THR
18
A
THR
18