1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yeagle, P.L.
Danis, C.
Choi, G.
Alderfer, J.L.
Albert, A.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Mol.Vis.
1090-0535
6
125
131
10930473
Three dimensional structure of the seventh transmembrane helical domain of the G-protein receptor, rhodopsin.
2000
10.2210/pdb1fdf/pdb
pdb_00001fdf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2954.488
RHODOPSIN
HELIX 7, RESIDUES 291-315
1
syn
polymer
no
no
PAFFAKTSAVYNPVIYIMMNKQFRN
PAFFAKTSAVYNPVIYIMMNKQFRN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2000-07-27
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
intradiskal loop 1 of bovine rhodopsin
intradiskal loop 2 of bovine rhodopsin
intradiskal loop 3 of bovine rhodopsin
amino terminal of bovine rhodopsin
RCSB
Y
RCSB
2000-07-20
REL
REL
solid phase peptide synthesis
sample
target function
150
1
2D NOESY
DQF-COSY
0
7
1
atm
303
K
DIANA
1
fewest violations
peptide
DMSO
Wuthrich
structure solution
DIANA
1
Wuthrich
refinement
DIANA
1
600
Bruker
AMX
PRO
1
n
1
PRO
1
A
ALA
2
n
2
ALA
2
A
PHE
3
n
3
PHE
3
A
PHE
4
n
4
PHE
4
A
ALA
5
n
5
ALA
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
SER
8
n
8
SER
8
A
ALA
9
n
9
ALA
9
A
VAL
10
n
10
VAL
10
A
TYR
11
n
11
TYR
11
A
ASN
12
n
12
ASN
12
A
PRO
13
n
13
PRO
13
A
VAL
14
n
14
VAL
14
A
ILE
15
n
15
ILE
15
A
TYR
16
n
16
TYR
16
A
ILE
17
n
17
ILE
17
A
MET
18
n
18
MET
18
A
MET
19
n
19
MET
19
A
ASN
20
n
20
ASN
20
A
LYS
21
n
21
LYS
21
A
GLN
22
n
22
GLN
22
A
PHE
23
n
23
PHE
23
A
ARG
24
n
24
ARG
24
A
ASN
25
n
25
ASN
25
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
ALA
VAL
9
10
-139.78
1
A
A
VAL
ILE
14
15
108.80
1
A
A
MET
ASN
19
20
143.62
1
A
A
ASN
LYS
20
21
-137.30
1
A
PHE
3
0.081
SIDE CHAIN
1
A
PHE
4
0.063
SIDE CHAIN
1
A
TYR
11
0.081
SIDE CHAIN
1
A
TYR
16
0.154
SIDE CHAIN
1
-8.22
0.60
121.00
112.78
A
A
A
CB
CG
CD1
TYR
TYR
TYR
11
11
11
N
1
-4.76
0.60
121.00
116.24
A
A
A
CB
CG
CD1
TYR
TYR
TYR
16
16
16
N
1
-6.40
0.70
120.80
114.40
A
A
A
CB
CG
CD2
PHE
PHE
PHE
23
23
23
N
1
5.11
0.70
120.80
125.91
A
A
A
CB
CG
CD1
PHE
PHE
PHE
23
23
23
N
1
A
ALA
5
-60.89
-77.32
1
A
LYS
6
-23.54
-65.67
1
A
VAL
10
-149.59
-37.88
1
A
TYR
11
86.53
-37.74
1
A
ASN
12
82.97
172.91
1
A
PRO
13
-76.16
49.85
1
A
VAL
14
-148.48
24.36
1
A
ASN
20
-80.56
-144.26
1
A
LYS
21
33.18
35.66
1
A
GLN
22
52.15
88.74
1
A
ARG
24
35.09
77.40
HELIX 7 BOVINE RHODOPSIN
1
N
N
A
ALA
5
A
ALA
5
HELX_P
A
VAL
10
A
VAL
10
1
1
6
A
MET
19
A
MET
19
HELX_P
A
ASN
25
A
ASN
25
1
2
7
SIGNALING PROTEIN
helix, SIGNALING PROTEIN
A
ALA
2
A
ALA
2
1
A
PHE
3
A
PHE
3
5.00
OPSD_BOVIN
UNP
1
291
P02699
PAFFAKTSAVYNPVIYIMMNKQFRN
291
315
1FDF
1
25
P02699
A
1
1
25
1
P 1