1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Hanaoka, S.
Nishimura, Y.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90
90
90
1
1
1
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
312
167
175
10.1006/jmbi.2001.4924
11545594
NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains.
2001
10.2210/pdb1fex/pdb
pdb_00001fex
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
6660.511
TRF2-INTERACTING TELOMERIC RAP1 PROTEIN
MYB-DOMAIN
25MDR
1
syn
polymer
no
no
GRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLRG
GRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLRG
A
trt001000207.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
RIKEN Structural Genomics/Proteomics Initiative
RSGI
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2001-09-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
RCSB
Y
RCSB
2000-07-24
REL
REL
THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE OCCURS NATURALLY IN HUMANS (HOMO SAPIENS).
sample
This structure was determined using standard 2D homonuclear techniques.
The submitted conformer models are 25 structure with the lowest energy in those with the fewest number of constraint violations.
100
25
2D NOESY
DQF-COSY
5.5
1
atm
300
K
the structures are based on a total of 884 restraints, 838 are NOE-derived distance constraints, 39 dihedral angle restraints, 7 distance restraints from hydrogen bonds.
distance geometry simulated annealing
1.0mM protein concentration in 100mM potassium phosphate buffer pH5.5, 1mM NaN3 ; 90%H2O, 10%D2O
90% H2O/10% D2O
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu,G., Pfeifer, J. and Bax,A.
processing
NMRPipe
4.2.5
Brnger,A.T.
structure solution
X-PLOR
3.851
Brnger,A.T.
refinement
X-PLOR
3.851
600
Bruker
DMX
GLY
1
n
1
GLY
1
A
ARG
2
n
2
ARG
2
A
ILE
3
n
3
ILE
3
A
ALA
4
n
4
ALA
4
A
PHE
5
n
5
PHE
5
A
THR
6
n
6
THR
6
A
ASP
7
n
7
ASP
7
A
ALA
8
n
8
ALA
8
A
ASP
9
n
9
ASP
9
A
ASP
10
n
10
ASP
10
A
VAL
11
n
11
VAL
11
A
ALA
12
n
12
ALA
12
A
ILE
13
n
13
ILE
13
A
LEU
14
n
14
LEU
14
A
THR
15
n
15
THR
15
A
TYR
16
n
16
TYR
16
A
VAL
17
n
17
VAL
17
A
LYS
18
n
18
LYS
18
A
GLU
19
n
19
GLU
19
A
ASN
20
n
20
ASN
20
A
ALA
21
n
21
ALA
21
A
ARG
22
n
22
ARG
22
A
SER
23
n
23
SER
23
A
PRO
24
n
24
PRO
24
A
SER
25
n
25
SER
25
A
SER
26
n
26
SER
26
A
VAL
27
n
27
VAL
27
A
THR
28
n
28
THR
28
A
GLY
29
n
29
GLY
29
A
ASN
30
n
30
ASN
30
A
ALA
31
n
31
ALA
31
A
LEU
32
n
32
LEU
32
A
TRP
33
n
33
TRP
33
A
LYS
34
n
34
LYS
34
A
ALA
35
n
35
ALA
35
A
MET
36
n
36
MET
36
A
GLU
37
n
37
GLU
37
A
LYS
38
n
38
LYS
38
A
SER
39
n
39
SER
39
A
SER
40
n
40
SER
40
A
LEU
41
n
41
LEU
41
A
THR
42
n
42
THR
42
A
GLN
43
n
43
GLN
43
A
HIS
44
n
44
HIS
44
A
SER
45
n
45
SER
45
A
TRP
46
n
46
TRP
46
A
GLN
47
n
47
GLN
47
A
SER
48
n
48
SER
48
A
LEU
49
n
49
LEU
49
A
LYS
50
n
50
LYS
50
A
ASP
51
n
51
ASP
51
A
ARG
52
n
52
ARG
52
A
TYR
53
n
53
TYR
53
A
LEU
54
n
54
LEU
54
A
LYS
55
n
55
LYS
55
A
HIS
56
n
56
HIS
56
A
LEU
57
n
57
LEU
57
A
ARG
58
n
58
ARG
58
A
GLY
59
n
59
GLY
59
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
2
0.305
SIDE CHAIN
1
A
ARG
22
0.261
SIDE CHAIN
1
A
ARG
52
0.229
SIDE CHAIN
1
A
ARG
58
0.290
SIDE CHAIN
2
A
ARG
2
0.250
SIDE CHAIN
2
A
ARG
22
0.275
SIDE CHAIN
2
A
ARG
52
0.267
SIDE CHAIN
2
A
ARG
58
0.297
SIDE CHAIN
3
A
ARG
2
0.285
SIDE CHAIN
3
A
ARG
22
0.288
SIDE CHAIN
3
A
ARG
52
0.189
SIDE CHAIN
3
A
ARG
58
0.305
SIDE CHAIN
4
A
ARG
2
0.218
SIDE CHAIN
4
A
ARG
22
0.288
SIDE CHAIN
4
A
ARG
52
0.207
SIDE CHAIN
4
A
ARG
58
0.317
SIDE CHAIN
5
A
ARG
2
0.277
SIDE CHAIN
5
A
ARG
22
0.309
SIDE CHAIN
5
A
ARG
52
0.254
SIDE CHAIN
5
A
ARG
58
0.315
SIDE CHAIN
6
A
ARG
2
0.311
SIDE CHAIN
6
A
ARG
22
0.277
SIDE CHAIN
6
A
ARG
52
0.266
SIDE CHAIN
6
A
ARG
58
0.210
SIDE CHAIN
7
A
ARG
2
0.230
SIDE CHAIN
7
A
ARG
22
0.269
SIDE CHAIN
7
A
ARG
52
0.310
SIDE CHAIN
7
A
ARG
58
0.318
SIDE CHAIN
8
A
ARG
2
0.213
SIDE CHAIN
8
A
ARG
22
0.233
SIDE CHAIN
8
A
ARG
52
0.315
SIDE CHAIN
8
A
ARG
58
0.258
SIDE CHAIN
9
A
ARG
2
0.226
SIDE CHAIN
9
A
ARG
22
0.287
SIDE CHAIN
9
A
ARG
52
0.228
SIDE CHAIN
9
A
ARG
58
0.285
SIDE CHAIN
10
A
ARG
2
0.303
SIDE CHAIN
10
A
ARG
22
0.288
SIDE CHAIN
10
A
ARG
52
0.289
SIDE CHAIN
10
A
ARG
58
0.311
SIDE CHAIN
11
A
ARG
2
0.217
SIDE CHAIN
11
A
ARG
22
0.259
SIDE CHAIN
11
A
ARG
52
0.294
SIDE CHAIN
11
A
ARG
58
0.317
SIDE CHAIN
12
A
ARG
2
0.289
SIDE CHAIN
12
A
ARG
22
0.300
SIDE CHAIN
12
A
ARG
52
0.310
SIDE CHAIN
12
A
ARG
58
0.223
SIDE CHAIN
13
A
ARG
2
0.280
SIDE CHAIN
13
A
ARG
22
0.290
SIDE CHAIN
13
A
ARG
52
0.262
SIDE CHAIN
13
A
ARG
58
0.274
SIDE CHAIN
14
A
ARG
2
0.213
SIDE CHAIN
14
A
ARG
22
0.299
SIDE CHAIN
14
A
ARG
52
0.239
SIDE CHAIN
14
A
ARG
58
0.306
SIDE CHAIN
15
A
ARG
2
0.315
SIDE CHAIN
15
A
ARG
22
0.303
SIDE CHAIN
15
A
ARG
52
0.268
SIDE CHAIN
15
A
ARG
58
0.259
SIDE CHAIN
16
A
ARG
2
0.214
SIDE CHAIN
16
A
ARG
22
0.264
SIDE CHAIN
16
A
ARG
52
0.203
SIDE CHAIN
16
A
ARG
58
0.299
SIDE CHAIN
17
A
ARG
2
0.296
SIDE CHAIN
17
A
ARG
22
0.310
SIDE CHAIN
17
A
ARG
52
0.267
SIDE CHAIN
17
A
ARG
58
0.278
SIDE CHAIN
18
A
ARG
2
0.218
SIDE CHAIN
18
A
ARG
22
0.257
SIDE CHAIN
18
A
ARG
52
0.262
SIDE CHAIN
18
A
ARG
58
0.304
SIDE CHAIN
19
A
ARG
2
0.227
SIDE CHAIN
19
A
ARG
22
0.249
SIDE CHAIN
19
A
ARG
52
0.305
SIDE CHAIN
19
A
ARG
58
0.189
SIDE CHAIN
20
A
ARG
2
0.298
SIDE CHAIN
20
A
ARG
22
0.318
SIDE CHAIN
20
A
ARG
52
0.270
SIDE CHAIN
20
A
ARG
58
0.313
SIDE CHAIN
21
A
ARG
2
0.292
SIDE CHAIN
21
A
ARG
22
0.307
SIDE CHAIN
21
A
ARG
52
0.226
SIDE CHAIN
21
A
ARG
58
0.276
SIDE CHAIN
22
A
ARG
2
0.288
SIDE CHAIN
22
A
ARG
22
0.254
SIDE CHAIN
22
A
ARG
52
0.302
SIDE CHAIN
22
A
ARG
58
0.318
SIDE CHAIN
23
A
ARG
2
0.308
SIDE CHAIN
23
A
ARG
22
0.249
SIDE CHAIN
23
A
ARG
52
0.317
SIDE CHAIN
23
A
ARG
58
0.261
SIDE CHAIN
24
A
ARG
2
0.285
SIDE CHAIN
24
A
ARG
22
0.268
SIDE CHAIN
24
A
ARG
52
0.281
SIDE CHAIN
24
A
ARG
58
0.226
SIDE CHAIN
25
A
ARG
2
0.129
SIDE CHAIN
25
A
ARG
22
0.311
SIDE CHAIN
25
A
ARG
52
0.307
SIDE CHAIN
25
A
ARG
58
0.316
SIDE CHAIN
1
A
ARG
2
-103.32
64.14
1
A
ILE
3
46.31
-169.86
1
A
THR
6
-112.87
-165.20
1
A
ASN
20
-98.27
-60.79
1
A
ALA
21
-60.51
92.71
1
A
ARG
22
-141.46
28.76
1
A
SER
25
-158.95
-57.61
1
A
ALA
31
-90.40
-63.73
1
A
THR
42
-108.94
-166.54
1
A
HIS
56
-169.87
46.65
1
A
LEU
57
-129.91
-69.31
2
A
ARG
2
-157.93
-157.44
2
A
ILE
3
38.58
-172.15
2
A
ALA
4
47.06
89.77
2
A
THR
6
-67.37
-176.28
2
A
ARG
22
-166.63
-43.11
2
A
SER
25
-165.92
-43.14
2
A
SER
39
-66.40
-72.38
2
A
THR
42
-88.44
-81.21
2
A
GLN
43
-164.60
65.07
2
A
HIS
56
-168.69
49.43
2
A
LEU
57
-131.88
-47.96
3
A
ALA
21
-67.83
76.09
3
A
SER
25
-162.77
-56.78
3
A
THR
28
-156.39
29.11
3
A
SER
39
-161.63
72.86
3
A
GLN
43
59.82
86.41
3
A
HIS
56
-163.63
49.69
3
A
LEU
57
-124.55
-65.11
3
A
ARG
58
-58.69
105.46
4
A
ALA
4
53.14
-166.94
4
A
ARG
22
-153.36
27.42
4
A
SER
25
-168.19
-38.61
4
A
SER
39
-123.98
-73.36
4
A
LEU
41
-140.52
-137.70
4
A
THR
42
-144.83
-62.33
4
A
GLN
43
-173.22
71.22
4
A
HIS
56
-169.08
44.41
4
A
LEU
57
-127.25
-70.08
5
A
PHE
5
-115.09
73.64
5
A
ALA
21
-45.84
99.91
5
A
ARG
22
-144.90
28.97
5
A
SER
25
-165.16
-42.70
5
A
THR
28
-147.93
15.93
5
A
ASN
30
49.48
27.07
5
A
THR
42
-56.44
-171.55
5
A
HIS
56
-150.00
20.24
5
A
LEU
57
-93.14
-64.84
6
A
ALA
21
-49.58
-86.67
6
A
SER
25
-152.44
-49.66
6
A
SER
39
-78.04
-77.15
6
A
THR
42
-54.26
-176.80
6
A
GLN
43
-64.20
84.40
6
A
HIS
56
-167.78
43.45
6
A
LEU
57
-126.16
-79.87
6
A
ARG
58
49.56
-171.17
7
A
ARG
2
-73.29
-161.47
7
A
ASN
20
-125.99
-55.57
7
A
ALA
21
-57.57
-97.96
7
A
SER
25
-155.34
-62.78
7
A
ASN
30
-143.20
23.26
7
A
SER
39
-129.71
-53.15
7
A
SER
40
-167.14
87.64
7
A
THR
42
-64.55
-165.23
7
A
HIS
56
-169.33
49.89
7
A
LEU
57
-130.57
-53.74
7
A
ARG
58
-56.09
173.61
8
A
ALA
4
53.16
-169.61
8
A
THR
6
-63.47
-154.25
8
A
ASN
20
-98.79
-62.32
8
A
ARG
22
-168.58
32.77
8
A
SER
25
-168.82
-42.74
8
A
SER
39
-122.26
-73.29
8
A
LEU
41
-134.61
-136.07
8
A
THR
42
-152.45
-153.48
8
A
HIS
56
-159.40
45.22
8
A
LEU
57
-127.93
-57.57
9
A
ARG
2
53.08
85.58
9
A
THR
6
-69.37
-171.75
9
A
ALA
21
-48.29
-93.57
9
A
SER
25
-154.17
-52.07
9
A
SER
39
-125.59
-54.76
9
A
SER
40
-165.80
79.47
9
A
THR
42
-58.11
-178.00
9
A
HIS
56
-168.21
49.77
9
A
LEU
57
-126.61
-72.84
10
A
ARG
22
-161.46
-43.33
10
A
SER
25
-156.12
-52.89
10
A
SER
26
-62.14
-72.38
10
A
SER
39
-167.75
64.09
10
A
THR
42
-114.99
-154.27
10
A
HIS
56
-171.10
45.69
10
A
LEU
57
-125.84
-77.26
11
A
ARG
2
53.95
176.27
11
A
THR
6
-78.42
-163.86
11
A
ALA
21
-48.42
101.12
11
A
SER
25
-155.04
-46.01
11
A
SER
39
-133.54
-71.86
11
A
SER
40
-172.39
-160.23
11
A
LEU
41
49.21
101.33
11
A
THR
42
48.55
-173.24
11
A
TRP
46
62.25
-24.51
11
A
HIS
56
-159.28
25.44
12
A
ARG
2
54.10
174.78
12
A
ALA
21
-41.76
100.84
12
A
ARG
22
-147.32
29.02
12
A
SER
39
-152.13
65.75
12
A
THR
42
-108.93
-167.96
12
A
GLN
47
-55.17
-71.95
12
A
HIS
56
-168.13
44.49
13
A
THR
6
-104.43
-157.84
13
A
ARG
22
-156.96
-45.47
13
A
SER
25
-155.15
-46.42
13
A
ASN
30
-98.03
33.56
13
A
THR
42
-112.33
-156.85
13
A
SER
45
-106.09
-168.26
13
A
HIS
56
-171.31
52.74
13
A
LEU
57
-137.21
-72.40
13
A
ARG
58
50.71
-166.11
14
A
ARG
2
53.82
85.39
14
A
ALA
4
47.84
26.40
14
A
ASN
30
54.84
17.58
14
A
ALA
31
-90.50
-62.80
14
A
THR
42
-107.73
-152.19
14
A
SER
45
-106.51
-169.90
14
A
HIS
56
-159.35
42.32
14
A
LEU
57
-116.94
-73.93
15
A
ARG
2
52.44
-176.19
15
A
PHE
5
-164.91
79.85
15
A
ALA
21
-44.60
98.82
15
A
SER
25
-164.83
-43.94
15
A
THR
28
-165.67
29.38
15
A
ASN
30
53.84
19.90
15
A
ALA
31
-90.74
-70.25
15
A
SER
39
-157.65
71.62
15
A
SER
45
-110.85
-168.62
15
A
HIS
56
-162.64
42.11
16
A
ILE
3
-100.84
67.15
16
A
ALA
21
-48.80
95.96
16
A
ARG
22
-152.76
28.64
16
A
SER
25
-162.43
-46.99
16
A
SER
39
-158.92
72.57
16
A
SER
45
-69.15
-167.04
16
A
HIS
56
-171.72
52.76
16
A
LEU
57
-139.65
-50.44
16
A
ARG
58
-59.65
94.86
17
A
ALA
21
-47.76
97.71
17
A
ARG
22
-151.95
25.00
17
A
SER
25
-168.78
-39.42
17
A
SER
39
-127.35
-74.52
17
A
SER
40
-154.39
89.14
17
A
THR
42
-58.04
-169.87
17
A
GLN
43
-65.98
88.47
17
A
HIS
56
-169.06
42.30
17
A
LEU
57
-124.23
-54.87
18
A
ALA
4
-78.34
-160.13
18
A
ALA
21
-50.68
-73.72
18
A
SER
25
-147.89
-45.36
18
A
THR
42
-101.18
-163.68
18
A
SER
45
-78.24
-168.61
18
A
HIS
56
-163.76
47.08
18
A
LEU
57
-133.09
-54.10
18
A
ARG
58
50.89
-176.58
19
A
THR
6
-66.90
-162.91
19
A
ASN
20
-102.61
-61.84
19
A
ALA
21
-47.88
101.15
19
A
ARG
22
-138.31
-43.46
19
A
SER
25
-167.59
-39.64
19
A
SER
39
-161.64
73.94
19
A
HIS
56
-167.79
49.18
19
A
LEU
57
-133.62
-53.93
20
A
ARG
2
-115.07
75.31
20
A
ILE
3
46.73
-175.30
20
A
ALA
21
-49.73
107.76
20
A
ARG
22
-145.96
-46.61
20
A
SER
25
-168.92
-46.90
20
A
THR
28
-152.79
23.30
20
A
ALA
31
-92.17
-60.64
20
A
SER
39
-90.52
-74.96
20
A
TYR
53
-60.53
-70.04
20
A
HIS
56
-158.38
35.34
20
A
LEU
57
-135.56
-50.25
21
A
ALA
21
-53.76
107.59
21
A
ARG
22
-153.64
27.82
21
A
SER
25
-161.74
-51.12
21
A
ALA
31
-90.59
-60.93
21
A
SER
39
-114.08
-76.36
21
A
SER
40
-174.91
104.14
21
A
LEU
41
-147.79
-80.71
21
A
THR
42
-162.98
-77.96
21
A
GLN
43
-176.21
86.26
21
A
HIS
56
-169.33
44.10
21
A
LEU
57
-129.09
-65.77
21
A
ARG
58
51.54
-172.97
22
A
ALA
4
53.41
-179.09
22
A
ALA
21
-64.10
81.03
22
A
SER
25
-153.29
-61.64
22
A
ALA
31
-90.58
-66.78
22
A
SER
39
-151.29
76.66
22
A
HIS
56
-172.29
50.98
22
A
LEU
57
-138.44
-46.96
23
A
ALA
4
53.23
179.36
23
A
THR
6
-73.27
-162.04
23
A
ALA
21
-52.77
-82.99
23
A
SER
25
-156.02
-44.10
23
A
ASN
30
53.63
18.95
23
A
SER
39
-153.23
73.85
23
A
THR
42
-104.55
-154.62
23
A
HIS
56
-164.83
30.48
24
A
ASN
20
-92.38
-62.83
24
A
ALA
21
-55.43
89.15
24
A
SER
25
-157.37
-45.79
24
A
THR
42
-116.30
-154.65
24
A
HIS
56
-156.62
40.64
24
A
LEU
57
-137.67
-44.90
24
A
ARG
58
-59.56
97.14
25
A
ALA
4
52.18
-169.21
25
A
ALA
21
-50.86
-82.82
25
A
SER
25
-154.50
-56.69
25
A
ALA
31
-90.21
-65.96
25
A
SER
39
-120.73
-72.97
25
A
SER
40
54.25
173.51
25
A
THR
42
-105.46
-159.21
25
A
HIS
56
-164.76
42.97
25
A
LEU
57
-121.50
-60.73
SOLUTION STRUCTURE OF MYB-DOMAIN OF HUMAN RAP1
1
N
N
A
THR
6
A
THR
6
HELX_P
A
ASN
20
A
ASN
20
1
1
15
A
ARG
22
A
ARG
22
HELX_P
A
VAL
27
A
VAL
27
1
2
6
A
ASN
30
A
ASN
30
HELX_P
A
LYS
38
A
LYS
38
1
3
9
A
SER
45
A
SER
45
HELX_P
A
LEU
57
A
LEU
57
1
4
13
STRUCTURAL PROTEIN
HELIX TURN HELIX, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, STRUCTURAL PROTEIN
TE2IP_HUMAN
UNP
1
132
Q9NYB0
GRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLRG
132
190
1FEX
1
59
Q9NYB0
A
1
1
59
1
P 1