1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Hanaoka, S. Nishimura, Y. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90 90 90 1 1 1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 312 167 175 10.1006/jmbi.2001.4924 11545594 NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains. 2001 10.2210/pdb1fex/pdb pdb_00001fex 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 6660.511 TRF2-INTERACTING TELOMERIC RAP1 PROTEIN MYB-DOMAIN 25MDR 1 syn polymer no no GRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLRG GRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLRG A trt001000207.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n RIKEN Structural Genomics/Proteomics Initiative RSGI database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 2001-09-19 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession Y RCSB Y RCSB 2000-07-24 REL REL THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE OCCURS NATURALLY IN HUMANS (HOMO SAPIENS). sample This structure was determined using standard 2D homonuclear techniques. The submitted conformer models are 25 structure with the lowest energy in those with the fewest number of constraint violations. 100 25 2D NOESY DQF-COSY 5.5 1 atm 300 K the structures are based on a total of 884 restraints, 838 are NOE-derived distance constraints, 39 dihedral angle restraints, 7 distance restraints from hydrogen bonds. distance geometry simulated annealing 1.0mM protein concentration in 100mM potassium phosphate buffer pH5.5, 1mM NaN3 ; 90%H2O, 10%D2O 90% H2O/10% D2O Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu,G., Pfeifer, J. and Bax,A. processing NMRPipe 4.2.5 Brnger,A.T. structure solution X-PLOR 3.851 Brnger,A.T. refinement X-PLOR 3.851 600 Bruker DMX GLY 1 n 1 GLY 1 A ARG 2 n 2 ARG 2 A ILE 3 n 3 ILE 3 A ALA 4 n 4 ALA 4 A PHE 5 n 5 PHE 5 A THR 6 n 6 THR 6 A ASP 7 n 7 ASP 7 A ALA 8 n 8 ALA 8 A ASP 9 n 9 ASP 9 A ASP 10 n 10 ASP 10 A VAL 11 n 11 VAL 11 A ALA 12 n 12 ALA 12 A ILE 13 n 13 ILE 13 A LEU 14 n 14 LEU 14 A THR 15 n 15 THR 15 A TYR 16 n 16 TYR 16 A VAL 17 n 17 VAL 17 A LYS 18 n 18 LYS 18 A GLU 19 n 19 GLU 19 A ASN 20 n 20 ASN 20 A ALA 21 n 21 ALA 21 A ARG 22 n 22 ARG 22 A SER 23 n 23 SER 23 A PRO 24 n 24 PRO 24 A SER 25 n 25 SER 25 A SER 26 n 26 SER 26 A VAL 27 n 27 VAL 27 A THR 28 n 28 THR 28 A GLY 29 n 29 GLY 29 A ASN 30 n 30 ASN 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A TRP 33 n 33 TRP 33 A LYS 34 n 34 LYS 34 A ALA 35 n 35 ALA 35 A MET 36 n 36 MET 36 A GLU 37 n 37 GLU 37 A LYS 38 n 38 LYS 38 A SER 39 n 39 SER 39 A SER 40 n 40 SER 40 A LEU 41 n 41 LEU 41 A THR 42 n 42 THR 42 A GLN 43 n 43 GLN 43 A HIS 44 n 44 HIS 44 A SER 45 n 45 SER 45 A TRP 46 n 46 TRP 46 A GLN 47 n 47 GLN 47 A SER 48 n 48 SER 48 A LEU 49 n 49 LEU 49 A LYS 50 n 50 LYS 50 A ASP 51 n 51 ASP 51 A ARG 52 n 52 ARG 52 A TYR 53 n 53 TYR 53 A LEU 54 n 54 LEU 54 A LYS 55 n 55 LYS 55 A HIS 56 n 56 HIS 56 A LEU 57 n 57 LEU 57 A ARG 58 n 58 ARG 58 A GLY 59 n 59 GLY 59 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ARG 2 0.305 SIDE CHAIN 1 A ARG 22 0.261 SIDE CHAIN 1 A ARG 52 0.229 SIDE CHAIN 1 A ARG 58 0.290 SIDE CHAIN 2 A ARG 2 0.250 SIDE CHAIN 2 A ARG 22 0.275 SIDE CHAIN 2 A ARG 52 0.267 SIDE CHAIN 2 A ARG 58 0.297 SIDE CHAIN 3 A ARG 2 0.285 SIDE CHAIN 3 A ARG 22 0.288 SIDE CHAIN 3 A ARG 52 0.189 SIDE CHAIN 3 A ARG 58 0.305 SIDE CHAIN 4 A ARG 2 0.218 SIDE CHAIN 4 A ARG 22 0.288 SIDE CHAIN 4 A ARG 52 0.207 SIDE CHAIN 4 A ARG 58 0.317 SIDE CHAIN 5 A ARG 2 0.277 SIDE CHAIN 5 A ARG 22 0.309 SIDE CHAIN 5 A ARG 52 0.254 SIDE CHAIN 5 A ARG 58 0.315 SIDE CHAIN 6 A ARG 2 0.311 SIDE CHAIN 6 A ARG 22 0.277 SIDE CHAIN 6 A ARG 52 0.266 SIDE CHAIN 6 A ARG 58 0.210 SIDE CHAIN 7 A ARG 2 0.230 SIDE CHAIN 7 A ARG 22 0.269 SIDE CHAIN 7 A ARG 52 0.310 SIDE CHAIN 7 A ARG 58 0.318 SIDE CHAIN 8 A ARG 2 0.213 SIDE CHAIN 8 A ARG 22 0.233 SIDE CHAIN 8 A ARG 52 0.315 SIDE CHAIN 8 A ARG 58 0.258 SIDE CHAIN 9 A ARG 2 0.226 SIDE CHAIN 9 A ARG 22 0.287 SIDE CHAIN 9 A ARG 52 0.228 SIDE CHAIN 9 A ARG 58 0.285 SIDE CHAIN 10 A ARG 2 0.303 SIDE CHAIN 10 A ARG 22 0.288 SIDE CHAIN 10 A ARG 52 0.289 SIDE CHAIN 10 A ARG 58 0.311 SIDE CHAIN 11 A ARG 2 0.217 SIDE CHAIN 11 A ARG 22 0.259 SIDE CHAIN 11 A ARG 52 0.294 SIDE CHAIN 11 A ARG 58 0.317 SIDE CHAIN 12 A ARG 2 0.289 SIDE CHAIN 12 A ARG 22 0.300 SIDE CHAIN 12 A ARG 52 0.310 SIDE CHAIN 12 A ARG 58 0.223 SIDE CHAIN 13 A ARG 2 0.280 SIDE CHAIN 13 A ARG 22 0.290 SIDE CHAIN 13 A ARG 52 0.262 SIDE CHAIN 13 A ARG 58 0.274 SIDE CHAIN 14 A ARG 2 0.213 SIDE CHAIN 14 A ARG 22 0.299 SIDE CHAIN 14 A ARG 52 0.239 SIDE CHAIN 14 A ARG 58 0.306 SIDE CHAIN 15 A ARG 2 0.315 SIDE CHAIN 15 A ARG 22 0.303 SIDE CHAIN 15 A ARG 52 0.268 SIDE CHAIN 15 A ARG 58 0.259 SIDE CHAIN 16 A ARG 2 0.214 SIDE CHAIN 16 A ARG 22 0.264 SIDE CHAIN 16 A ARG 52 0.203 SIDE CHAIN 16 A ARG 58 0.299 SIDE CHAIN 17 A ARG 2 0.296 SIDE CHAIN 17 A ARG 22 0.310 SIDE CHAIN 17 A ARG 52 0.267 SIDE CHAIN 17 A ARG 58 0.278 SIDE CHAIN 18 A ARG 2 0.218 SIDE CHAIN 18 A ARG 22 0.257 SIDE CHAIN 18 A ARG 52 0.262 SIDE CHAIN 18 A ARG 58 0.304 SIDE CHAIN 19 A ARG 2 0.227 SIDE CHAIN 19 A ARG 22 0.249 SIDE CHAIN 19 A ARG 52 0.305 SIDE CHAIN 19 A ARG 58 0.189 SIDE CHAIN 20 A ARG 2 0.298 SIDE CHAIN 20 A ARG 22 0.318 SIDE CHAIN 20 A ARG 52 0.270 SIDE CHAIN 20 A ARG 58 0.313 SIDE CHAIN 21 A ARG 2 0.292 SIDE CHAIN 21 A ARG 22 0.307 SIDE CHAIN 21 A ARG 52 0.226 SIDE CHAIN 21 A ARG 58 0.276 SIDE CHAIN 22 A ARG 2 0.288 SIDE CHAIN 22 A ARG 22 0.254 SIDE CHAIN 22 A ARG 52 0.302 SIDE CHAIN 22 A ARG 58 0.318 SIDE CHAIN 23 A ARG 2 0.308 SIDE CHAIN 23 A ARG 22 0.249 SIDE CHAIN 23 A ARG 52 0.317 SIDE CHAIN 23 A ARG 58 0.261 SIDE CHAIN 24 A ARG 2 0.285 SIDE CHAIN 24 A ARG 22 0.268 SIDE CHAIN 24 A ARG 52 0.281 SIDE CHAIN 24 A ARG 58 0.226 SIDE CHAIN 25 A ARG 2 0.129 SIDE CHAIN 25 A ARG 22 0.311 SIDE CHAIN 25 A ARG 52 0.307 SIDE CHAIN 25 A ARG 58 0.316 SIDE CHAIN 1 A ARG 2 -103.32 64.14 1 A ILE 3 46.31 -169.86 1 A THR 6 -112.87 -165.20 1 A ASN 20 -98.27 -60.79 1 A ALA 21 -60.51 92.71 1 A ARG 22 -141.46 28.76 1 A SER 25 -158.95 -57.61 1 A ALA 31 -90.40 -63.73 1 A THR 42 -108.94 -166.54 1 A HIS 56 -169.87 46.65 1 A LEU 57 -129.91 -69.31 2 A ARG 2 -157.93 -157.44 2 A ILE 3 38.58 -172.15 2 A ALA 4 47.06 89.77 2 A THR 6 -67.37 -176.28 2 A ARG 22 -166.63 -43.11 2 A SER 25 -165.92 -43.14 2 A SER 39 -66.40 -72.38 2 A THR 42 -88.44 -81.21 2 A GLN 43 -164.60 65.07 2 A HIS 56 -168.69 49.43 2 A LEU 57 -131.88 -47.96 3 A ALA 21 -67.83 76.09 3 A SER 25 -162.77 -56.78 3 A THR 28 -156.39 29.11 3 A SER 39 -161.63 72.86 3 A GLN 43 59.82 86.41 3 A HIS 56 -163.63 49.69 3 A LEU 57 -124.55 -65.11 3 A ARG 58 -58.69 105.46 4 A ALA 4 53.14 -166.94 4 A ARG 22 -153.36 27.42 4 A SER 25 -168.19 -38.61 4 A SER 39 -123.98 -73.36 4 A LEU 41 -140.52 -137.70 4 A THR 42 -144.83 -62.33 4 A GLN 43 -173.22 71.22 4 A HIS 56 -169.08 44.41 4 A LEU 57 -127.25 -70.08 5 A PHE 5 -115.09 73.64 5 A ALA 21 -45.84 99.91 5 A ARG 22 -144.90 28.97 5 A SER 25 -165.16 -42.70 5 A THR 28 -147.93 15.93 5 A ASN 30 49.48 27.07 5 A THR 42 -56.44 -171.55 5 A HIS 56 -150.00 20.24 5 A LEU 57 -93.14 -64.84 6 A ALA 21 -49.58 -86.67 6 A SER 25 -152.44 -49.66 6 A SER 39 -78.04 -77.15 6 A THR 42 -54.26 -176.80 6 A GLN 43 -64.20 84.40 6 A HIS 56 -167.78 43.45 6 A LEU 57 -126.16 -79.87 6 A ARG 58 49.56 -171.17 7 A ARG 2 -73.29 -161.47 7 A ASN 20 -125.99 -55.57 7 A ALA 21 -57.57 -97.96 7 A SER 25 -155.34 -62.78 7 A ASN 30 -143.20 23.26 7 A SER 39 -129.71 -53.15 7 A SER 40 -167.14 87.64 7 A THR 42 -64.55 -165.23 7 A HIS 56 -169.33 49.89 7 A LEU 57 -130.57 -53.74 7 A ARG 58 -56.09 173.61 8 A ALA 4 53.16 -169.61 8 A THR 6 -63.47 -154.25 8 A ASN 20 -98.79 -62.32 8 A ARG 22 -168.58 32.77 8 A SER 25 -168.82 -42.74 8 A SER 39 -122.26 -73.29 8 A LEU 41 -134.61 -136.07 8 A THR 42 -152.45 -153.48 8 A HIS 56 -159.40 45.22 8 A LEU 57 -127.93 -57.57 9 A ARG 2 53.08 85.58 9 A THR 6 -69.37 -171.75 9 A ALA 21 -48.29 -93.57 9 A SER 25 -154.17 -52.07 9 A SER 39 -125.59 -54.76 9 A SER 40 -165.80 79.47 9 A THR 42 -58.11 -178.00 9 A HIS 56 -168.21 49.77 9 A LEU 57 -126.61 -72.84 10 A ARG 22 -161.46 -43.33 10 A SER 25 -156.12 -52.89 10 A SER 26 -62.14 -72.38 10 A SER 39 -167.75 64.09 10 A THR 42 -114.99 -154.27 10 A HIS 56 -171.10 45.69 10 A LEU 57 -125.84 -77.26 11 A ARG 2 53.95 176.27 11 A THR 6 -78.42 -163.86 11 A ALA 21 -48.42 101.12 11 A SER 25 -155.04 -46.01 11 A SER 39 -133.54 -71.86 11 A SER 40 -172.39 -160.23 11 A LEU 41 49.21 101.33 11 A THR 42 48.55 -173.24 11 A TRP 46 62.25 -24.51 11 A HIS 56 -159.28 25.44 12 A ARG 2 54.10 174.78 12 A ALA 21 -41.76 100.84 12 A ARG 22 -147.32 29.02 12 A SER 39 -152.13 65.75 12 A THR 42 -108.93 -167.96 12 A GLN 47 -55.17 -71.95 12 A HIS 56 -168.13 44.49 13 A THR 6 -104.43 -157.84 13 A ARG 22 -156.96 -45.47 13 A SER 25 -155.15 -46.42 13 A ASN 30 -98.03 33.56 13 A THR 42 -112.33 -156.85 13 A SER 45 -106.09 -168.26 13 A HIS 56 -171.31 52.74 13 A LEU 57 -137.21 -72.40 13 A ARG 58 50.71 -166.11 14 A ARG 2 53.82 85.39 14 A ALA 4 47.84 26.40 14 A ASN 30 54.84 17.58 14 A ALA 31 -90.50 -62.80 14 A THR 42 -107.73 -152.19 14 A SER 45 -106.51 -169.90 14 A HIS 56 -159.35 42.32 14 A LEU 57 -116.94 -73.93 15 A ARG 2 52.44 -176.19 15 A PHE 5 -164.91 79.85 15 A ALA 21 -44.60 98.82 15 A SER 25 -164.83 -43.94 15 A THR 28 -165.67 29.38 15 A ASN 30 53.84 19.90 15 A ALA 31 -90.74 -70.25 15 A SER 39 -157.65 71.62 15 A SER 45 -110.85 -168.62 15 A HIS 56 -162.64 42.11 16 A ILE 3 -100.84 67.15 16 A ALA 21 -48.80 95.96 16 A ARG 22 -152.76 28.64 16 A SER 25 -162.43 -46.99 16 A SER 39 -158.92 72.57 16 A SER 45 -69.15 -167.04 16 A HIS 56 -171.72 52.76 16 A LEU 57 -139.65 -50.44 16 A ARG 58 -59.65 94.86 17 A ALA 21 -47.76 97.71 17 A ARG 22 -151.95 25.00 17 A SER 25 -168.78 -39.42 17 A SER 39 -127.35 -74.52 17 A SER 40 -154.39 89.14 17 A THR 42 -58.04 -169.87 17 A GLN 43 -65.98 88.47 17 A HIS 56 -169.06 42.30 17 A LEU 57 -124.23 -54.87 18 A ALA 4 -78.34 -160.13 18 A ALA 21 -50.68 -73.72 18 A SER 25 -147.89 -45.36 18 A THR 42 -101.18 -163.68 18 A SER 45 -78.24 -168.61 18 A HIS 56 -163.76 47.08 18 A LEU 57 -133.09 -54.10 18 A ARG 58 50.89 -176.58 19 A THR 6 -66.90 -162.91 19 A ASN 20 -102.61 -61.84 19 A ALA 21 -47.88 101.15 19 A ARG 22 -138.31 -43.46 19 A SER 25 -167.59 -39.64 19 A SER 39 -161.64 73.94 19 A HIS 56 -167.79 49.18 19 A LEU 57 -133.62 -53.93 20 A ARG 2 -115.07 75.31 20 A ILE 3 46.73 -175.30 20 A ALA 21 -49.73 107.76 20 A ARG 22 -145.96 -46.61 20 A SER 25 -168.92 -46.90 20 A THR 28 -152.79 23.30 20 A ALA 31 -92.17 -60.64 20 A SER 39 -90.52 -74.96 20 A TYR 53 -60.53 -70.04 20 A HIS 56 -158.38 35.34 20 A LEU 57 -135.56 -50.25 21 A ALA 21 -53.76 107.59 21 A ARG 22 -153.64 27.82 21 A SER 25 -161.74 -51.12 21 A ALA 31 -90.59 -60.93 21 A SER 39 -114.08 -76.36 21 A SER 40 -174.91 104.14 21 A LEU 41 -147.79 -80.71 21 A THR 42 -162.98 -77.96 21 A GLN 43 -176.21 86.26 21 A HIS 56 -169.33 44.10 21 A LEU 57 -129.09 -65.77 21 A ARG 58 51.54 -172.97 22 A ALA 4 53.41 -179.09 22 A ALA 21 -64.10 81.03 22 A SER 25 -153.29 -61.64 22 A ALA 31 -90.58 -66.78 22 A SER 39 -151.29 76.66 22 A HIS 56 -172.29 50.98 22 A LEU 57 -138.44 -46.96 23 A ALA 4 53.23 179.36 23 A THR 6 -73.27 -162.04 23 A ALA 21 -52.77 -82.99 23 A SER 25 -156.02 -44.10 23 A ASN 30 53.63 18.95 23 A SER 39 -153.23 73.85 23 A THR 42 -104.55 -154.62 23 A HIS 56 -164.83 30.48 24 A ASN 20 -92.38 -62.83 24 A ALA 21 -55.43 89.15 24 A SER 25 -157.37 -45.79 24 A THR 42 -116.30 -154.65 24 A HIS 56 -156.62 40.64 24 A LEU 57 -137.67 -44.90 24 A ARG 58 -59.56 97.14 25 A ALA 4 52.18 -169.21 25 A ALA 21 -50.86 -82.82 25 A SER 25 -154.50 -56.69 25 A ALA 31 -90.21 -65.96 25 A SER 39 -120.73 -72.97 25 A SER 40 54.25 173.51 25 A THR 42 -105.46 -159.21 25 A HIS 56 -164.76 42.97 25 A LEU 57 -121.50 -60.73 SOLUTION STRUCTURE OF MYB-DOMAIN OF HUMAN RAP1 1 N N A THR 6 A THR 6 HELX_P A ASN 20 A ASN 20 1 1 15 A ARG 22 A ARG 22 HELX_P A VAL 27 A VAL 27 1 2 6 A ASN 30 A ASN 30 HELX_P A LYS 38 A LYS 38 1 3 9 A SER 45 A SER 45 HELX_P A LEU 57 A LEU 57 1 4 13 STRUCTURAL PROTEIN HELIX TURN HELIX, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, STRUCTURAL PROTEIN TE2IP_HUMAN UNP 1 132 Q9NYB0 GRIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLRG 132 190 1FEX 1 59 Q9NYB0 A 1 1 59 1 P 1