0.019516 0.000000 0.000000 0.000000 0.017295 0.000000 0.000000 0.000000 0.016273 0.00000 0.00000 0.00000 Mahalingam, B. Louis, J.M. Harrison, R.W. Weber, I.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 51.240 57.820 61.450 C35 H68 N11 O8 1 770.983 N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide p2/NC peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N N N 5 S C N 6 N C N 7 N O N 8 R C N 9 N O N 10 N C N 11 N N N 12 S C N 13 N C N 14 N O N 15 S C N 16 N C N 17 N C N 18 N C N 19 N N N 20 S C N 21 N C N 22 N C N 23 N C N 24 N C N 25 N C N 26 N N N 27 S C N 28 N C N 29 N O N 30 N C N 31 N C N 32 N C N 33 N C N 34 N N N 35 S C N 36 N C N 37 N O N 38 N C N 39 N C N 40 N C N 41 N O N 42 N N N 43 N N N 44 S C N 45 N C N 46 N O N 47 N C N 48 N C N 49 N C N 50 N N N 51 N C N 52 N N N 53 N N N 54 N N N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N N N 137 S C N 138 N C N 139 N O N 140 N C N 141 N C N 142 N C N 143 N N N 144 N C N 145 N N N 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N O N 170 N N N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N O N 187 N O N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N N N 197 R C N 198 N C N 199 N O N 200 N C N 201 N S N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N N N 211 S C N 212 N C N 213 N O N 214 N C N 215 N C N 216 N C N 217 N O N 218 N N N 219 N O N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N C N 237 N O N 238 N O N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N N N 250 N C N 251 N C N 252 N O N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C Y 264 N C Y 265 N N Y 266 N C Y 267 N C Y 268 N N N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N O N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 S C N 288 N C N 289 N C N 290 N C N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C N 310 N C N 311 N C N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N C N 333 N C N 334 N C N 335 N N N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N N N 353 S C N 354 N C N 355 N O N 356 N C N 357 N C N 358 N S N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N N N 396 S C N 397 N C N 398 N O N 399 N C N 400 N C N 401 N C N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N N N 413 S C N 414 N C N 415 N O N 416 N C N 417 N O N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N N N 427 S C N 428 N C N 429 N O N 430 R C N 431 N O N 432 N C N 433 N O N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N N N 444 S C N 445 N C N 446 N O N 447 N C Y 448 N C Y 449 N C Y 450 N C Y 451 N N Y 452 N C Y 453 N C Y 454 N C Y 455 N C Y 456 N C N 457 N O N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N N N 471 S C N 472 N C N 473 N O N 474 N C Y 475 N C Y 476 N C Y 477 N C Y 478 N C Y 479 N C Y 480 N C N 481 N O N 482 N O N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N N N 495 S C N 496 N C N 497 N O N 498 N C N 499 N C N 500 N C N 501 N O N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N doub N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N doub N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N doub N 257 N sing N 258 N sing N 259 N sing N 260 N sing Y 261 N sing Y 262 N doub Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing Y 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub N 374 N sing Y 375 N doub N 376 N sing Y 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing Y 438 N doub Y 439 N sing Y 440 N sing N 441 N sing Y 442 N doub Y 443 N sing Y 444 N sing N 445 N sing Y 446 N sing Y 447 N doub N 448 N sing Y 449 N doub N 450 N sing Y 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing US Proteins PSFGEY 0867 0887-3585 43 455 464 10.1002/prot.1057 11340661 Structural implications of drug-resistant mutants of HIV-1 protease: high-resolution crystal structures of the mutant protease/substrate analogue complexes. 2001 10.2210/pdb1ff0/pdb pdb_00001ff0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 90 1 CCD 1999-10-08 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.037 1.0 X12B NSLS 1.037 SYNCHROTRON NSLS BEAMLINE X12B 10724.654 PROTEASE RETROPEPSIN 3.4.23.16 K45I 2 man polymer SEQUENCE ANALOGOUS TO THE p2-NC PROCESSING SITE IN HIV-1 770.983 N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide 1 syn non-polymer 18.015 water 122 nat water E.C.3.4.23.16 no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPIMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPIMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 2.05 39.92 VAPOR DIFFUSION, HANGING DROP 6.5 CITRATE/PHOSPHATE BUFFER 0.05M, DTT 10MM, DMSO 10%, SATURATED AMMONIUM SULPHATE 25-50%, PROTEIN 2-5 MG/ML. pH 5.0-6.5 VAPOR DIFFUSION, HANGING DROP at 298K 298 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond entity pdbx_entity_src_syn repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Non-polymer description Other Database references Derived calculations Data collection Source and taxonomy Structure summary 1 0 2001-06-01 1 1 2008-04-27 1 2 2011-07-13 1 3 2012-05-09 1 4 2013-02-27 1 5 2021-11-03 1 6 2024-02-07 1 7 2024-03-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _entity.details RCSB Y RCSB 2000-07-24 REL 2NC N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide HOH water THE INHIBITOR 2NC HAS A REDUCED PEPTIDE BOND ISOSTERE [CH2-NH] IN PLACE OF THE SCISSILE AMIDE. THE COORDINATES OF 2NC WERE DEPOSITED WITH AN EXTRA ATOM O6 AT ZERO OCCUPANCY. THIS ZERO OCCUPANCY O6 HAS BEEN REMOVED FROM THE RELEASED FILE. MUTATIONS Q7K, L33I, L63I, C67A, C95A, HAVE BEEN MADE TO STABILIZE THE PROTEASE FROM AUTOPROTEOLYSIS, WHILE RETAINING ACTIVITY SIMILAR TO WILD-TYPE HIV-1 PROTEASE Inhibitor N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide Peptide-like ACE 300 2 2NC 2NC 300 C HOH 1 3 HOH HOH 100 C HOH 3 3 HOH HOH 101 C HOH 4 3 HOH HOH 102 C HOH 6 3 HOH HOH 103 C HOH 7 3 HOH HOH 104 C HOH 8 3 HOH HOH 105 C HOH 9 3 HOH HOH 106 C HOH 11 3 HOH HOH 107 C HOH 12 3 HOH HOH 108 C HOH 13 3 HOH HOH 109 C HOH 14 3 HOH HOH 110 C HOH 16 3 HOH HOH 111 C HOH 19 3 HOH HOH 112 C HOH 22 3 HOH HOH 113 C HOH 24 3 HOH HOH 114 C HOH 26 3 HOH HOH 115 C HOH 34 3 HOH HOH 116 C HOH 35 3 HOH HOH 117 C HOH 46 3 HOH HOH 118 C HOH 119 3 HOH HOH 119 C HOH 50 3 HOH HOH 120 C HOH 61 3 HOH HOH 121 C HOH 63 3 HOH HOH 122 C HOH 65 3 HOH HOH 123 C HOH 67 3 HOH HOH 124 C HOH 68 3 HOH HOH 125 C HOH 71 3 HOH HOH 126 C HOH 72 3 HOH HOH 127 C HOH 128 3 HOH HOH 128 C HOH 80 3 HOH HOH 129 C HOH 87 3 HOH HOH 130 C HOH 89 3 HOH HOH 131 C HOH 91 3 HOH HOH 132 C HOH 98 3 HOH HOH 133 C HOH 102 3 HOH HOH 134 C HOH 111 3 HOH HOH 135 C HOH 118 3 HOH HOH 136 C HOH 124 3 HOH HOH 137 C HOH 126 3 HOH HOH 138 C HOH 138 3 HOH HOH 139 C HOH 145 3 HOH HOH 140 C HOH 151 3 HOH HOH 141 C HOH 159 3 HOH HOH 142 C HOH 169 3 HOH HOH 143 C HOH 170 3 HOH HOH 144 C HOH 171 3 HOH HOH 145 C HOH 172 3 HOH HOH 146 C HOH 176 3 HOH HOH 147 C HOH 178 3 HOH HOH 148 C HOH 205 3 HOH HOH 149 C HOH 226 3 HOH HOH 150 C HOH 263 3 HOH HOH 151 C HOH 276 3 HOH HOH 152 C HOH 279 3 HOH HOH 153 C HOH 339 3 HOH HOH 154 C HOH 385 3 HOH HOH 155 C HOH 382 3 HOH HOH 156 C HOH 381 3 HOH HOH 157 C HOH 25 3 HOH HOH 158 C HOH 41 3 HOH HOH 159 C HOH 48 3 HOH HOH 160 C HOH 51 3 HOH HOH 161 C HOH 49 3 HOH HOH 162 C HOH 74 3 HOH HOH 163 C HOH 356 3 HOH HOH 252 C HOH 2 3 HOH HOH 200 D HOH 5 3 HOH HOH 201 D HOH 15 3 HOH HOH 202 D HOH 17 3 HOH HOH 203 D HOH 18 3 HOH HOH 204 D HOH 21 3 HOH HOH 205 D HOH 23 3 HOH HOH 206 D HOH 29 3 HOH HOH 207 D HOH 30 3 HOH HOH 208 D HOH 31 3 HOH HOH 209 D HOH 36 3 HOH HOH 210 D HOH 38 3 HOH HOH 211 D HOH 42 3 HOH HOH 212 D HOH 45 3 HOH HOH 213 D HOH 47 3 HOH HOH 214 D HOH 52 3 HOH HOH 215 D HOH 54 3 HOH HOH 216 D HOH 55 3 HOH HOH 217 D HOH 56 3 HOH HOH 218 D HOH 57 3 HOH HOH 219 D HOH 59 3 HOH HOH 220 D HOH 60 3 HOH HOH 221 D HOH 62 3 HOH HOH 222 D HOH 66 3 HOH HOH 223 D HOH 70 3 HOH HOH 224 D HOH 75 3 HOH HOH 225 D HOH 76 3 HOH HOH 226 D HOH 78 3 HOH HOH 227 D HOH 79 3 HOH HOH 228 D HOH 92 3 HOH HOH 229 D HOH 95 3 HOH HOH 230 D HOH 97 3 HOH HOH 231 D HOH 99 3 HOH HOH 232 D HOH 100 3 HOH HOH 233 D HOH 103 3 HOH HOH 234 D HOH 104 3 HOH HOH 235 D HOH 113 3 HOH HOH 236 D HOH 115 3 HOH HOH 237 D HOH 116 3 HOH HOH 238 D HOH 122 3 HOH HOH 239 D HOH 140 3 HOH HOH 240 D HOH 141 3 HOH HOH 241 D HOH 146 3 HOH HOH 242 D HOH 152 3 HOH HOH 243 D HOH 162 3 HOH HOH 244 D HOH 163 3 HOH HOH 245 D HOH 185 3 HOH HOH 246 D HOH 197 3 HOH HOH 247 D HOH 239 3 HOH HOH 248 D HOH 244 3 HOH HOH 249 D HOH 272 3 HOH HOH 250 D HOH 343 3 HOH HOH 251 D HOH 388 3 HOH HOH 253 D HOH 389 3 HOH HOH 254 D HOH 387 3 HOH HOH 255 D HOH 386 3 HOH HOH 256 D HOH 383 3 HOH HOH 257 D PRO 1 n 1 PRO 1 C GLN 2 n 2 GLN 2 C ILE 3 n 3 ILE 3 C THR 4 n 4 THR 4 C LEU 5 n 5 LEU 5 C TRP 6 n 6 TRP 6 C LYS 7 n 7 LYS 7 C ARG 8 n 8 ARG 8 C PRO 9 n 9 PRO 9 C LEU 10 n 10 LEU 10 C VAL 11 n 11 VAL 11 C THR 12 n 12 THR 12 C ILE 13 n 13 ILE 13 C LYS 14 n 14 LYS 14 C ILE 15 n 15 ILE 15 C GLY 16 n 16 GLY 16 C GLY 17 n 17 GLY 17 C GLN 18 n 18 GLN 18 C LEU 19 n 19 LEU 19 C LYS 20 n 20 LYS 20 C GLU 21 n 21 GLU 21 C ALA 22 n 22 ALA 22 C LEU 23 n 23 LEU 23 C LEU 24 n 24 LEU 24 C ASP 25 n 25 ASP 25 C THR 26 n 26 THR 26 C GLY 27 n 27 GLY 27 C ALA 28 n 28 ALA 28 C ASP 29 n 29 ASP 29 C ASP 30 n 30 ASP 30 C THR 31 n 31 THR 31 C VAL 32 n 32 VAL 32 C ILE 33 n 33 ILE 33 C GLU 34 n 34 GLU 34 C GLU 35 n 35 GLU 35 C MET 36 n 36 MET 36 C SER 37 n 37 SER 37 C LEU 38 n 38 LEU 38 C PRO 39 n 39 PRO 39 C GLY 40 n 40 GLY 40 C ARG 41 n 41 ARG 41 C TRP 42 n 42 TRP 42 C LYS 43 n 43 LYS 43 C PRO 44 n 44 PRO 44 C ILE 45 n 45 ILE 45 C MET 46 n 46 MET 46 C ILE 47 n 47 ILE 47 C GLY 48 n 48 GLY 48 C GLY 49 n 49 GLY 49 C ILE 50 n 50 ILE 50 C GLY 51 n 51 GLY 51 C GLY 52 n 52 GLY 52 C PHE 53 n 53 PHE 53 C ILE 54 n 54 ILE 54 C LYS 55 n 55 LYS 55 C VAL 56 n 56 VAL 56 C ARG 57 n 57 ARG 57 C GLN 58 n 58 GLN 58 C TYR 59 n 59 TYR 59 C ASP 60 n 60 ASP 60 C GLN 61 n 61 GLN 61 C ILE 62 n 62 ILE 62 C ILE 63 n 63 ILE 63 C ILE 64 n 64 ILE 64 C GLU 65 n 65 GLU 65 C ILE 66 n 66 ILE 66 C ALA 67 n 67 ALA 67 C GLY 68 n 68 GLY 68 C HIS 69 n 69 HIS 69 C LYS 70 n 70 LYS 70 C ALA 71 n 71 ALA 71 C ILE 72 n 72 ILE 72 C GLY 73 n 73 GLY 73 C THR 74 n 74 THR 74 C VAL 75 n 75 VAL 75 C LEU 76 n 76 LEU 76 C VAL 77 n 77 VAL 77 C GLY 78 n 78 GLY 78 C PRO 79 n 79 PRO 79 C THR 80 n 80 THR 80 C PRO 81 n 81 PRO 81 C VAL 82 n 82 VAL 82 C ASN 83 n 83 ASN 83 C ILE 84 n 84 ILE 84 C ILE 85 n 85 ILE 85 C GLY 86 n 86 GLY 86 C ARG 87 n 87 ARG 87 C ASN 88 n 88 ASN 88 C LEU 89 n 89 LEU 89 C LEU 90 n 90 LEU 90 C THR 91 n 91 THR 91 C GLN 92 n 92 GLN 92 C ILE 93 n 93 ILE 93 C GLY 94 n 94 GLY 94 C ALA 95 n 95 ALA 95 C THR 96 n 96 THR 96 C LEU 97 n 97 LEU 97 C ASN 98 n 98 ASN 98 C PHE 99 n 99 PHE 99 C PRO 101 n 1 PRO 101 D GLN 102 n 2 GLN 102 D ILE 103 n 3 ILE 103 D THR 104 n 4 THR 104 D LEU 105 n 5 LEU 105 D TRP 106 n 6 TRP 106 D LYS 107 n 7 LYS 107 D ARG 108 n 8 ARG 108 D PRO 109 n 9 PRO 109 D LEU 110 n 10 LEU 110 D VAL 111 n 11 VAL 111 D THR 112 n 12 THR 112 D ILE 113 n 13 ILE 113 D LYS 114 n 14 LYS 114 D ILE 115 n 15 ILE 115 D GLY 116 n 16 GLY 116 D GLY 117 n 17 GLY 117 D GLN 118 n 18 GLN 118 D LEU 119 n 19 LEU 119 D LYS 120 n 20 LYS 120 D GLU 121 n 21 GLU 121 D ALA 122 n 22 ALA 122 D LEU 123 n 23 LEU 123 D LEU 124 n 24 LEU 124 D ASP 125 n 25 ASP 125 D THR 126 n 26 THR 126 D GLY 127 n 27 GLY 127 D ALA 128 n 28 ALA 128 D ASP 129 n 29 ASP 129 D ASP 130 n 30 ASP 130 D THR 131 n 31 THR 131 D VAL 132 n 32 VAL 132 D ILE 133 n 33 ILE 133 D GLU 134 n 34 GLU 134 D GLU 135 n 35 GLU 135 D MET 136 n 36 MET 136 D SER 137 n 37 SER 137 D LEU 138 n 38 LEU 138 D PRO 139 n 39 PRO 139 D GLY 140 n 40 GLY 140 D ARG 141 n 41 ARG 141 D TRP 142 n 42 TRP 142 D LYS 143 n 43 LYS 143 D PRO 144 n 44 PRO 144 D ILE 145 n 45 ILE 145 D MET 146 n 46 MET 146 D ILE 147 n 47 ILE 147 D GLY 148 n 48 GLY 148 D GLY 149 n 49 GLY 149 D ILE 150 n 50 ILE 150 D GLY 151 n 51 GLY 151 D GLY 152 n 52 GLY 152 D PHE 153 n 53 PHE 153 D ILE 154 n 54 ILE 154 D LYS 155 n 55 LYS 155 D VAL 156 n 56 VAL 156 D ARG 157 n 57 ARG 157 D GLN 158 n 58 GLN 158 D TYR 159 n 59 TYR 159 D ASP 160 n 60 ASP 160 D GLN 161 n 61 GLN 161 D ILE 162 n 62 ILE 162 D ILE 163 n 63 ILE 163 D ILE 164 n 64 ILE 164 D GLU 165 n 65 GLU 165 D ILE 166 n 66 ILE 166 D ALA 167 n 67 ALA 167 D GLY 168 n 68 GLY 168 D HIS 169 n 69 HIS 169 D LYS 170 n 70 LYS 170 D ALA 171 n 71 ALA 171 D ILE 172 n 72 ILE 172 D GLY 173 n 73 GLY 173 D THR 174 n 74 THR 174 D VAL 175 n 75 VAL 175 D LEU 176 n 76 LEU 176 D VAL 177 n 77 VAL 177 D GLY 178 n 78 GLY 178 D PRO 179 n 79 PRO 179 D THR 180 n 80 THR 180 D PRO 181 n 81 PRO 181 D VAL 182 n 82 VAL 182 D ASN 183 n 83 ASN 183 D ILE 184 n 84 ILE 184 D ILE 185 n 85 ILE 185 D GLY 186 n 86 GLY 186 D ARG 187 n 87 ARG 187 D ASN 188 n 88 ASN 188 D LEU 189 n 89 LEU 189 D LEU 190 n 90 LEU 190 D THR 191 n 91 THR 191 D GLN 192 n 92 GLN 192 D ILE 193 n 93 ILE 193 D GLY 194 n 94 GLY 194 D ALA 195 n 95 ALA 195 D THR 196 n 96 THR 196 D LEU 197 n 97 LEU 197 D ASN 198 n 98 ASN 198 D PHE 199 n 99 PHE 199 D author_and_software_defined_assembly PISA 2 dimeric 5430 -30 9160 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 C N ILE 3 A N ILE 3 D O LEU 197 B O LEU 97 D O ASN 198 B O ASN 98 C N THR 96 A N THR 96 C O LEU 97 A O LEU 97 D N ILE 103 B N ILE 3 0.2320000 0.2010000 1.85 8.0 937 15911 5.9 Random 1 THROUGHOUT 1.0 ENGH & HUBER 1.85 8.0 122 1686 54 0 1510 1.85 25.0 1FF0 0.0610000 1 0.1780000 1.85 1.93 1 99.9 phasing AMoRE refinement X-PLOR 3.843 data collection ADSC data scaling SCALEPACK STRUCTURAL IMPLICATIONS OF DRUG RESISTANT MUTANTS OF HIV-1 PROTEASE: HIGH RESOLUTION CRYSTAL STRUCTURES OF THE MUTANT PROTEASE/SUBSTRATE ANALOG COMPLEXES. 1 N N 1 N N 2 N N 3 N N 3 N N The biological assembly is a dimer consisting of chains C and D C GLY 86 A GLY 86 HELX_P C THR 91 A THR 91 1 1 6 D GLY 186 B GLY 86 HELX_P D THR 191 B THR 91 1 2 6 HYDROLASE/HYDROLASE INHIBITOR HIV-1 PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX POL_HV1B5 UNP 1 69 P04587 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 69 167 1FF0 1 99 P04587 C 1 1 99 69 167 1FF0 101 199 P04587 D 1 1 99 1 GLN engineered mutation LYS 7 1FF0 C P04587 UNP 75 7 1 LEU engineered mutation ILE 33 1FF0 C P04587 UNP 101 33 1 LYS engineered mutation ILE 45 1FF0 C P04587 UNP 113 45 1 LEU engineered mutation ILE 63 1FF0 C P04587 UNP 131 63 1 CYS engineered mutation ALA 67 1FF0 C P04587 UNP 135 67 1 CYS engineered mutation ALA 95 1FF0 C P04587 UNP 163 95 2 GLN engineered mutation LYS 107 1FF0 D P04587 UNP 75 7 2 LEU engineered mutation ILE 133 1FF0 D P04587 UNP 101 33 2 LYS engineered mutation ILE 145 1FF0 D P04587 UNP 113 45 2 LEU engineered mutation ILE 163 1FF0 D P04587 UNP 131 63 2 CYS engineered mutation ALA 167 1FF0 D P04587 UNP 135 67 2 CYS engineered mutation ALA 195 1FF0 D P04587 UNP 163 95 4 anti-parallel anti-parallel anti-parallel C GLN 2 A GLN 2 C ILE 3 A ILE 3 D THR 196 B THR 96 D ASN 198 B ASN 98 C THR 96 A THR 96 C ASN 98 A ASN 98 D GLN 102 B GLN 2 D THR 104 B THR 4 BINDING SITE FOR RESIDUE 2NC C 300 C 2NC 300 Software 29 C ARG 8 A ARG 8 29 1_555 C LEU 23 A LEU 23 29 1_555 C ASP 25 A ASP 25 29 1_555 C GLY 27 A GLY 27 29 1_555 C ALA 28 A ALA 28 29 1_555 C ASP 29 A ASP 29 29 1_555 C ASP 30 A ASP 30 29 1_555 C ILE 47 A ILE 47 29 1_555 C GLY 48 A GLY 48 29 1_555 C GLY 49 A GLY 49 29 1_555 C ILE 50 A ILE 50 29 1_555 C VAL 82 A VAL 82 29 1_555 C HOH 100 D HOH 29 1_555 C HOH 119 D HOH 29 1_555 C HOH 128 D HOH 29 1_555 C HOH 158 D HOH 29 1_555 C HOH 161 D HOH 29 1_555 D ARG 108 B ARG 8 29 1_555 D ASP 125 B ASP 25 29 1_555 D GLY 127 B GLY 27 29 1_555 D ALA 128 B ALA 28 29 1_555 D ASP 129 B ASP 29 29 1_555 D ASP 130 B ASP 30 29 1_555 D ILE 147 B ILE 47 29 1_555 D GLY 148 B GLY 48 29 1_555 D GLY 149 B GLY 49 29 1_555 D VAL 182 B VAL 82 29 1_555 D HOH 200 E HOH 29 1_555 D HOH 223 E HOH 29 1_555 19 orthorhombic P 21 21 21