1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kao, Y.-H. Lee, G.F. Wang, Y. Starovasnik, M.A. Kelley, R.F. Spellman, M.W. Lerner, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose L-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 R C N 89 S C N 90 R C N 91 S C N 92 S C N 93 N C N 94 N O N 95 N O N 96 N O N 97 N O N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 S C N 113 N C N 114 N O N 115 N C N 116 N C N 117 N C N 118 N O N 119 N N N 120 N O N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N O N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 N C N 152 N C N 153 N O N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N N N 161 S C N 162 N C N 163 N O N 164 N C Y 165 N C Y 166 N N Y 167 N C Y 168 N C Y 169 N N N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 S C N 186 N C N 187 N C N 188 N C N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 S C N 205 N C N 206 N O N 207 N C N 208 N C N 209 N C N 210 N C N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 N C N 230 N C N 231 N C N 232 N C N 233 N N N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing Y 163 N sing Y 164 N doub Y 165 N doub N 166 N sing Y 167 N sing N 168 N sing Y 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N doub N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing Y 250 N doub Y 251 N sing Y 252 N sing N 253 N sing Y 254 N doub N 255 N sing Y 256 N doub N 257 N sing Y 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N doub N 324 N sing Y 325 N doub N 326 N sing Y 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing US Biochemistry BICHAW 0033 0006-2960 38 7097 7110 10.1021/bi990234z 10353820 The effect of O-fucosylation on the first EGF-like domain from human blood coagulation factor VII. 1999 10.2210/pdb1ff7/pdb pdb_00001ff7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 CALCIUM BOUND FORM 4878.247 PROTEIN (Blood Coagulation Factor VII) FIRST EGF-LIKE DOMAIN (FUCOSYLATED AT SER-60) 1 man polymer 164.156 alpha-L-fucopyranose 1 man non-polymer no no SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGSA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Data collection Derived calculations Structure summary Data collection Database references Structure summary 1 0 1999-06-16 1 1 2008-04-26 1 2 2011-07-13 1 3 2020-07-29 1 4 2023-12-27 _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession LFucpa a-L-fucopyranose a-L-Fucp Fuc BNL Y RCSB 1999-02-19 REL REL FUC alpha-L-fucopyranose DETAILS ARE INCLUDED IN THE PUBLICATION. LEAST RESTRAINT VIOLATION AND LOWEST XPLOR ENERGY 100 20 DQF-COSY 2Q TOCSY NOESY 1H-15N HSQC 3D 1H-15N NOESY-HSQC 3D 1H-15N TOCSY-HSQC 400mM 5.5 1 atm 298 K REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. HYBRID DISTANCE GEOMETRY - SIMULATED ANNEALING BRUNGER refinement X-PLOR 3.851 structure solution Felix structure solution X-PLOR 500 Varian INOVA 500 FUC 91 2 FUC FUC 91 A SER 45 n 1 SER 45 A ASP 46 n 2 ASP 46 A GLY 47 n 3 GLY 47 A ASP 48 n 4 ASP 48 A GLN 49 n 5 GLN 49 A CYS 50 n 6 CYS 50 A ALA 51 n 7 ALA 51 A SER 52 n 8 SER 52 A SER 53 n 9 SER 53 A PRO 54 n 10 PRO 54 A CYS 55 n 11 CYS 55 A GLN 56 n 12 GLN 56 A ASN 57 n 13 ASN 57 A GLY 58 n 14 GLY 58 A GLY 59 n 15 GLY 59 A SER 60 n 16 SER 60 A CYS 61 n 17 CYS 61 A LYS 62 n 18 LYS 62 A ASP 63 n 19 ASP 63 A GLN 64 n 20 GLN 64 A LEU 65 n 21 LEU 65 A GLN 66 n 22 GLN 66 A SER 67 n 23 SER 67 A TYR 68 n 24 TYR 68 A ILE 69 n 25 ILE 69 A CYS 70 n 26 CYS 70 A PHE 71 n 27 PHE 71 A CYS 72 n 28 CYS 72 A LEU 73 n 29 LEU 73 A PRO 74 n 30 PRO 74 A ALA 75 n 31 ALA 75 A PHE 76 n 32 PHE 76 A GLU 77 n 33 GLU 77 A GLY 78 n 34 GLY 78 A ARG 79 n 35 ARG 79 A ASN 80 n 36 ASN 80 A CYS 81 n 37 CYS 81 A GLU 82 n 38 GLU 82 A THR 83 n 39 THR 83 A HIS 84 n 40 HIS 84 A LYS 85 n 41 LYS 85 A ASP 86 n 42 ASP 86 A ASP 87 n 43 ASP 87 A GLY 88 n 44 GLY 88 A SER 89 n 45 SER 89 A ALA 90 n 46 ALA 90 A author_defined_assembly 1 monomeric A SER 60 GLYCOSYLATION SITE A SER 16 SER 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLN 66 56.55 -86.04 1 A SER 67 -103.40 -159.48 1 A TYR 68 -120.52 -169.93 1 A ASP 87 52.69 78.32 2 A GLN 49 -142.40 29.07 2 A CYS 50 -158.35 57.07 2 A SER 52 -119.07 -76.33 2 A SER 53 -174.65 79.61 2 A GLN 66 56.67 -85.76 2 A SER 67 -93.23 -157.48 2 A LYS 85 -82.51 -72.05 2 A SER 89 55.61 -86.75 3 A GLN 49 -121.05 -58.70 3 A SER 53 51.51 77.72 3 A CYS 55 -62.54 -178.47 3 A SER 67 -118.19 -151.91 3 A LYS 85 -67.38 95.06 3 A ASP 87 52.91 -174.77 4 A SER 53 46.18 80.04 4 A GLN 56 -129.89 -166.25 4 A GLN 66 56.62 -85.94 4 A SER 67 -95.27 -159.06 4 A CYS 72 -103.94 -169.56 4 A ASP 87 -168.32 -165.33 5 A ASP 46 -92.49 48.78 5 A SER 53 51.41 71.28 5 A GLN 56 -146.50 -155.64 5 A GLN 66 56.49 -85.99 5 A SER 89 52.85 94.56 6 A SER 53 51.11 84.85 6 A GLN 66 56.53 -85.90 6 A SER 67 -91.15 -158.12 6 A TYR 68 -129.46 -168.64 6 A SER 89 52.85 87.81 7 A ASP 48 -150.01 -41.15 7 A SER 53 51.07 72.99 7 A GLN 56 -157.33 -159.16 7 A GLN 64 -109.68 -167.72 7 A LEU 65 -57.12 -75.19 7 A GLN 66 -90.12 -77.12 7 A LYS 85 -61.43 95.08 8 A SER 53 50.71 83.05 8 A GLN 66 56.35 -86.13 8 A SER 67 -95.26 -157.87 8 A CYS 72 -123.14 -169.10 8 A SER 89 -138.95 -49.24 9 A SER 53 51.04 71.93 9 A GLN 56 -147.78 -154.19 9 A GLN 64 -111.28 -168.20 9 A LEU 65 -58.21 -77.35 9 A GLN 66 -81.70 -76.97 9 A SER 67 -87.70 -158.27 9 A LYS 85 -60.67 -80.55 9 A ASP 86 -178.64 -38.00 9 A ASP 87 -168.72 -164.93 9 A SER 89 -83.66 -71.33 10 A ASP 46 -163.09 116.75 10 A SER 53 50.91 79.69 10 A GLN 64 -112.87 -169.16 10 A GLN 66 56.96 -85.80 10 A SER 67 -98.49 -159.43 10 A TYR 68 -124.47 -168.03 10 A LYS 85 -83.65 -72.12 10 A ASP 86 57.02 -84.97 10 A ASP 87 55.87 -87.63 11 A GLN 49 -134.73 -56.24 11 A GLN 66 56.89 -85.55 11 A SER 67 -112.00 -157.58 11 A ASP 87 53.27 179.55 12 A ASP 46 -165.65 48.59 12 A SER 52 -111.05 -77.34 12 A SER 53 178.00 68.58 12 A GLN 66 56.54 -85.76 12 A SER 67 -62.33 -157.50 12 A ASP 87 -150.61 48.96 12 A SER 89 52.84 -177.52 13 A ASP 46 52.84 -178.57 13 A GLN 49 -159.67 27.92 13 A GLN 56 -156.28 -158.76 13 A GLN 64 -126.37 -169.29 13 A GLN 66 56.38 -86.18 13 A SER 67 -94.61 -159.09 13 A TYR 68 -124.97 -169.94 13 A SER 89 -96.90 36.52 14 A ASP 46 -145.16 -71.59 14 A CYS 50 -142.95 48.81 14 A SER 53 52.30 94.55 14 A GLN 56 -146.81 -159.10 14 A GLN 64 -122.37 -169.32 14 A GLN 66 56.31 -86.38 14 A SER 67 -84.12 -158.00 14 A SER 89 -166.77 -43.96 15 A SER 53 51.10 80.76 15 A GLN 66 56.63 -85.92 15 A SER 67 -104.95 -160.45 15 A TYR 68 -119.30 -168.97 15 A CYS 72 -109.59 -169.03 15 A LYS 85 -61.53 -70.62 15 A ASP 87 56.58 -86.08 16 A GLN 66 56.78 -85.47 16 A SER 67 -83.57 -156.71 16 A CYS 72 -71.96 -169.24 16 A LYS 85 -61.09 -73.38 16 A SER 89 -167.73 -71.57 17 A ASP 46 55.54 -86.53 17 A ALA 51 -88.94 49.66 17 A SER 52 -150.27 21.37 17 A GLN 64 -126.59 -166.05 17 A GLN 66 56.51 -85.82 17 A SER 67 -106.03 -157.72 18 A ASP 46 56.47 -85.99 18 A GLN 66 56.45 -85.99 18 A SER 67 -107.65 -160.80 18 A TYR 68 -114.50 -169.89 18 A ASP 87 -109.47 -67.11 19 A ASP 46 -103.45 51.76 19 A GLN 66 55.88 -86.16 19 A SER 67 -107.46 -158.64 19 A TYR 68 -118.80 -169.86 19 A ASP 86 -152.16 65.62 19 A ASP 87 52.91 -179.68 19 A SER 89 52.80 78.68 20 A ASP 48 -123.68 -70.60 20 A GLN 64 -129.31 -168.89 20 A GLN 66 57.08 -85.07 20 A SER 67 -75.78 -157.67 20 A CYS 72 -110.20 -168.98 20 A SER 89 50.31 -160.05 THE FIRST EGF-LIKE DOMAIN FROM HUMAN BLOOD COAGULATION FVII (FUCOSYLATED AT SER-60), NMR, 20 STRUCTURES 1 N N 2 N N disulf 2.020 A CYS 50 A SG CYS 6 1_555 A CYS 61 A SG CYS 17 1_555 disulf 2.019 A CYS 55 A SG CYS 11 1_555 A CYS 70 A SG CYS 26 1_555 disulf 2.020 A CYS 72 A SG CYS 28 1_555 A CYS 81 A SG CYS 37 1_555 covale 1.398 one O-Glycosylation A SER 60 A OG SER 16 1_555 A FUC 91 B C1 FUC 1_555 BLOOD CLOTTING FACTOR VII, BLOOD COAGULATION, EGF-LIKE DOMAIN, GLYCOPROTEIN, FUCOSYLATION, O- LINKED FUCOSE, BLOOD CLOTTING FA7_HUMAN UNP 1 P08709 83 125 1FF7 45 87 P08709 A 1 1 43 1 SEE REMARK 999 GLY 88 1FF7 A P08709 UNP 44 1 SEE REMARK 999 SER 89 1FF7 A P08709 UNP 45 1 SEE REMARK 999 ALA 90 1FF7 A P08709 UNP 46 2 2 anti-parallel anti-parallel A SER 60 A SER 16 A ASP 63 A ASP 19 A TYR 68 A TYR 24 A PHE 71 A PHE 27 A PHE 76 A PHE 32 A GLU 77 A GLU 33 A THR 83 A THR 39 A HIS 84 A HIS 40 1 P 1