0.019643 0.000000 0.000000 0.000000 0.017166 0.000000 0.000000 0.000000 0.016354 0.00000 0.00000 0.00000 Mahalingam, B. Louis, J.M. Harrison, R.W. Weber, I.T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 50.908 58.255 61.148 C40 H70 N11 O8 1 833.053 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide Inhibitor analogues of CA-p2 peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N N N 9 N C N 10 N N N 11 N N N 12 N N N 13 S C N 14 N C N 15 N O N 16 N C N 17 N C N 18 N C N 19 N N N 20 S C N 21 N C N 22 N C N 23 N C N 24 N C N 25 N C N 26 N N N 27 S C N 28 N C N 29 N O N 30 N C Y 31 N C Y 32 N C Y 33 N C Y 34 N C Y 35 N C Y 36 N C N 37 N N N 38 S C N 39 N C N 40 N O N 41 N C N 42 N C N 43 N C N 44 N O N 45 N O N 46 N N N 47 S C N 48 N C N 49 N O N 50 N C N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N C N 59 N N N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N N N 131 S C N 132 N C N 133 N O N 134 N C N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N N N 144 S C N 145 N C N 146 N O N 147 N C N 148 N C N 149 N C N 150 N N N 151 N C N 152 N N N 153 N N N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N O N 177 N N N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N N N 188 S C N 189 N C N 190 N O N 191 N C N 192 N C N 193 N O N 194 N O N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N N N 204 R C N 205 N C N 206 N O N 207 N C N 208 N S N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N N Y 273 N C Y 274 N C Y 275 N N N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N O N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 S C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N C N 340 N C N 341 N C N 342 N N N 343 N O N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N S N 366 N C N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C N 407 N C N 408 N C N 409 N O N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C N 424 N O N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 R C N 438 N O N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C Y 455 N C Y 456 N C Y 457 N C Y 458 N N Y 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N N N 478 S C N 479 N C N 480 N O N 481 N C Y 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C N 488 N O N 489 N O N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N N N 502 S C N 503 N C N 504 N O N 505 N C N 506 N C N 507 N C N 508 N O N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N doub N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing Y 68 N doub Y 69 N sing Y 70 N sing N 71 N sing Y 72 N doub N 73 N sing Y 74 N doub N 75 N sing Y 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N doub N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N sing Y 270 N doub Y 271 N doub N 272 N sing Y 273 N sing N 274 N sing Y 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing Y 377 N doub Y 378 N sing Y 379 N sing N 380 N sing Y 381 N doub N 382 N sing Y 383 N doub N 384 N sing Y 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N doub N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N doub N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N doub N 442 N sing N 443 N sing N 444 N sing N 445 N sing Y 446 N doub Y 447 N sing Y 448 N sing N 449 N sing Y 450 N doub Y 451 N sing Y 452 N sing N 453 N sing Y 454 N sing Y 455 N doub N 456 N sing Y 457 N doub N 458 N sing Y 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing Y 474 N doub Y 475 N sing Y 476 N sing N 477 N sing Y 478 N doub N 479 N sing Y 480 N doub N 481 N sing Y 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N doub N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing US Proteins PSFGEY 0867 0887-3585 43 455 464 10.1002/prot.1057 11340661 Structural implications of drug-resistant mutants of HIV-1 protease: high-resolution crystal structures of the mutant protease/substrate analogue complexes. 2001 10.2210/pdb1fff/pdb pdb_00001fff 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 90 1 CCD 1999-10-09 ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 1.037 1.0 X12B NSLS 1.037 SYNCHROTRON NSLS BEAMLINE X12B 10739.691 PROTEASE RETROPEPSIN 3.4.23.16 D30N 2 man polymer SEQUENCE ANALOGOUS TO THE CA-p2 PROCESSING SITE IN HIV-1 833.053 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide 1 syn non-polymer 18.015 water 105 nat water E.C.3.4.23.16 no no PQITLWKRPLVTIKIGGQLKEALLDTGADNTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF PQITLWKRPLVTIKIGGQLKEALLDTGADNTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia sample 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 2.03 39.43 VAPOR DIFFUSION, HANGING DROP CITRATE/PHOSPHATE BUFFER 0.05M, DTT 10MM, DMSO 10%, SATURATED AMMONIUM SULPHATE 25-50%, PROTEIN 2-5 MG/ML, pH 5-6.5. VAPOR DIFFUSION, HANGING DROP at 298K 298 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond entity pdbx_entity_src_syn repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Database references Derived calculations Data collection Source and taxonomy Structure summary 1 0 2001-06-01 1 1 2008-04-27 1 2 2011-07-13 1 3 2012-12-12 1 4 2021-11-03 1 5 2024-02-07 1 6 2024-03-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _entity.details RCSB Y RCSB 2000-07-25 REL 0Q4 N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl-L-alanyl-L-norleucinamide HOH water PEPTIDE INHIBITOR 0Q4 HAS A REDUCED PEPTIDE (-CH2-NH) INSTEAD OF THE NORMAL PEPTIDE LINK (-CO-NH). MUTATIONS Q7K, L33I, L63I, C67A, C95A, HAVE BEEN MADE TO STABILIZE THE PROTEASE FROM AUTOPROTEOLYSIS, WHILE RETAINING ACTIVITY SIMILAR TO WILD-TYPE HIV-1 PROTEASE Inhibitor N-[(2R)-2-({N~5~-[amino(iminio)methyl]-L-ornithyl-L-valyl}amino)-4-methylpentyl]-L-phenylalanyl-L-alpha-glutamyl- L-alanyl-L-norleucinamide Peptide-like ARG 401 2 0Q4 0Q4 401 D HOH 3 3 HOH HOH 100 C HOH 4 3 HOH HOH 101 C HOH 5 3 HOH HOH 102 C HOH 8 3 HOH HOH 103 C HOH 9 3 HOH HOH 104 C HOH 11 3 HOH HOH 105 C HOH 19 3 HOH HOH 106 C HOH 20 3 HOH HOH 107 C HOH 22 3 HOH HOH 108 C HOH 25 3 HOH HOH 109 C HOH 26 3 HOH HOH 110 C HOH 28 3 HOH HOH 111 C HOH 33 3 HOH HOH 112 C HOH 35 3 HOH HOH 113 C HOH 39 3 HOH HOH 114 C HOH 41 3 HOH HOH 115 C HOH 42 3 HOH HOH 116 C HOH 44 3 HOH HOH 117 C HOH 46 3 HOH HOH 118 C HOH 47 3 HOH HOH 119 C HOH 49 3 HOH HOH 120 C HOH 51 3 HOH HOH 121 C HOH 52 3 HOH HOH 122 C HOH 53 3 HOH HOH 123 C HOH 60 3 HOH HOH 124 C HOH 63 3 HOH HOH 125 C HOH 68 3 HOH HOH 126 C HOH 70 3 HOH HOH 127 C HOH 74 3 HOH HOH 128 C HOH 80 3 HOH HOH 129 C HOH 82 3 HOH HOH 130 C HOH 85 3 HOH HOH 131 C HOH 91 3 HOH HOH 132 C HOH 109 3 HOH HOH 133 C HOH 119 3 HOH HOH 134 C HOH 125 3 HOH HOH 135 C HOH 126 3 HOH HOH 136 C HOH 129 3 HOH HOH 137 C HOH 130 3 HOH HOH 138 C HOH 134 3 HOH HOH 139 C HOH 139 3 HOH HOH 140 C HOH 145 3 HOH HOH 141 C HOH 148 3 HOH HOH 142 C HOH 152 3 HOH HOH 143 C HOH 171 3 HOH HOH 144 C HOH 175 3 HOH HOH 145 C HOH 177 3 HOH HOH 146 C HOH 178 3 HOH HOH 147 C HOH 180 3 HOH HOH 148 C HOH 6 3 HOH HOH 6 D HOH 7 3 HOH HOH 7 D HOH 64 3 HOH HOH 64 D HOH 77 3 HOH HOH 77 D HOH 96 3 HOH HOH 96 D HOH 1 3 HOH HOH 200 D HOH 2 3 HOH HOH 201 D HOH 10 3 HOH HOH 202 D HOH 12 3 HOH HOH 203 D HOH 14 3 HOH HOH 204 D HOH 15 3 HOH HOH 205 D HOH 16 3 HOH HOH 206 D HOH 18 3 HOH HOH 207 D HOH 21 3 HOH HOH 208 D HOH 23 3 HOH HOH 209 D HOH 24 3 HOH HOH 210 D HOH 27 3 HOH HOH 211 D HOH 29 3 HOH HOH 212 D HOH 31 3 HOH HOH 213 D HOH 34 3 HOH HOH 214 D HOH 37 3 HOH HOH 215 D HOH 40 3 HOH HOH 216 D HOH 43 3 HOH HOH 217 D HOH 45 3 HOH HOH 218 D HOH 48 3 HOH HOH 219 D HOH 50 3 HOH HOH 220 D HOH 54 3 HOH HOH 221 D HOH 57 3 HOH HOH 222 D HOH 59 3 HOH HOH 223 D HOH 61 3 HOH HOH 224 D HOH 62 3 HOH HOH 225 D HOH 65 3 HOH HOH 226 D HOH 66 3 HOH HOH 227 D HOH 71 3 HOH HOH 228 D HOH 73 3 HOH HOH 229 D HOH 76 3 HOH HOH 230 D HOH 78 3 HOH HOH 231 D HOH 79 3 HOH HOH 232 D HOH 86 3 HOH HOH 233 D HOH 87 3 HOH HOH 234 D HOH 92 3 HOH HOH 235 D HOH 97 3 HOH HOH 236 D HOH 101 3 HOH HOH 237 D HOH 108 3 HOH HOH 238 D HOH 123 3 HOH HOH 239 D HOH 132 3 HOH HOH 240 D HOH 136 3 HOH HOH 241 D HOH 151 3 HOH HOH 242 D HOH 153 3 HOH HOH 243 D HOH 154 3 HOH HOH 244 D HOH 155 3 HOH HOH 245 D HOH 161 3 HOH HOH 246 D HOH 176 3 HOH HOH 247 D HOH 179 3 HOH HOH 248 D HOH 110 3 HOH HOH 249 D HOH 168 3 HOH HOH 250 D PRO 1 n 1 PRO 1 C GLN 2 n 2 GLN 2 C ILE 3 n 3 ILE 3 C THR 4 n 4 THR 4 C LEU 5 n 5 LEU 5 C TRP 6 n 6 TRP 6 C LYS 7 n 7 LYS 7 C ARG 8 n 8 ARG 8 C PRO 9 n 9 PRO 9 C LEU 10 n 10 LEU 10 C VAL 11 n 11 VAL 11 C THR 12 n 12 THR 12 C ILE 13 n 13 ILE 13 C LYS 14 n 14 LYS 14 C ILE 15 n 15 ILE 15 C GLY 16 n 16 GLY 16 C GLY 17 n 17 GLY 17 C GLN 18 n 18 GLN 18 C LEU 19 n 19 LEU 19 C LYS 20 n 20 LYS 20 C GLU 21 n 21 GLU 21 C ALA 22 n 22 ALA 22 C LEU 23 n 23 LEU 23 C LEU 24 n 24 LEU 24 C ASP 25 n 25 ASP 25 C THR 26 n 26 THR 26 C GLY 27 n 27 GLY 27 C ALA 28 n 28 ALA 28 C ASP 29 n 29 ASP 29 C ASN 30 n 30 ASN 30 C THR 31 n 31 THR 31 C VAL 32 n 32 VAL 32 C ILE 33 n 33 ILE 33 C GLU 34 n 34 GLU 34 C GLU 35 n 35 GLU 35 C MET 36 n 36 MET 36 C SER 37 n 37 SER 37 C LEU 38 n 38 LEU 38 C PRO 39 n 39 PRO 39 C GLY 40 n 40 GLY 40 C ARG 41 n 41 ARG 41 C TRP 42 n 42 TRP 42 C LYS 43 n 43 LYS 43 C PRO 44 n 44 PRO 44 C LYS 45 n 45 LYS 45 C MET 46 n 46 MET 46 C ILE 47 n 47 ILE 47 C GLY 48 n 48 GLY 48 C GLY 49 n 49 GLY 49 C ILE 50 n 50 ILE 50 C GLY 51 n 51 GLY 51 C GLY 52 n 52 GLY 52 C PHE 53 n 53 PHE 53 C ILE 54 n 54 ILE 54 C LYS 55 n 55 LYS 55 C VAL 56 n 56 VAL 56 C ARG 57 n 57 ARG 57 C GLN 58 n 58 GLN 58 C TYR 59 n 59 TYR 59 C ASP 60 n 60 ASP 60 C GLN 61 n 61 GLN 61 C ILE 62 n 62 ILE 62 C ILE 63 n 63 ILE 63 C ILE 64 n 64 ILE 64 C GLU 65 n 65 GLU 65 C ILE 66 n 66 ILE 66 C ALA 67 n 67 ALA 67 C GLY 68 n 68 GLY 68 C HIS 69 n 69 HIS 69 C LYS 70 n 70 LYS 70 C ALA 71 n 71 ALA 71 C ILE 72 n 72 ILE 72 C GLY 73 n 73 GLY 73 C THR 74 n 74 THR 74 C VAL 75 n 75 VAL 75 C LEU 76 n 76 LEU 76 C VAL 77 n 77 VAL 77 C GLY 78 n 78 GLY 78 C PRO 79 n 79 PRO 79 C THR 80 n 80 THR 80 C PRO 81 n 81 PRO 81 C VAL 82 n 82 VAL 82 C ASN 83 n 83 ASN 83 C ILE 84 n 84 ILE 84 C ILE 85 n 85 ILE 85 C GLY 86 n 86 GLY 86 C ARG 87 n 87 ARG 87 C ASN 88 n 88 ASN 88 C LEU 89 n 89 LEU 89 C LEU 90 n 90 LEU 90 C THR 91 n 91 THR 91 C GLN 92 n 92 GLN 92 C ILE 93 n 93 ILE 93 C GLY 94 n 94 GLY 94 C ALA 95 n 95 ALA 95 C THR 96 n 96 THR 96 C LEU 97 n 97 LEU 97 C ASN 98 n 98 ASN 98 C PHE 99 n 99 PHE 99 C PRO 101 n 1 PRO 101 D GLN 102 n 2 GLN 102 D ILE 103 n 3 ILE 103 D THR 104 n 4 THR 104 D LEU 105 n 5 LEU 105 D TRP 106 n 6 TRP 106 D LYS 107 n 7 LYS 107 D ARG 108 n 8 ARG 108 D PRO 109 n 9 PRO 109 D LEU 110 n 10 LEU 110 D VAL 111 n 11 VAL 111 D THR 112 n 12 THR 112 D ILE 113 n 13 ILE 113 D LYS 114 n 14 LYS 114 D ILE 115 n 15 ILE 115 D GLY 116 n 16 GLY 116 D GLY 117 n 17 GLY 117 D GLN 118 n 18 GLN 118 D LEU 119 n 19 LEU 119 D LYS 120 n 20 LYS 120 D GLU 121 n 21 GLU 121 D ALA 122 n 22 ALA 122 D LEU 123 n 23 LEU 123 D LEU 124 n 24 LEU 124 D ASP 125 n 25 ASP 125 D THR 126 n 26 THR 126 D GLY 127 n 27 GLY 127 D ALA 128 n 28 ALA 128 D ASP 129 n 29 ASP 129 D ASN 130 n 30 ASN 130 D THR 131 n 31 THR 131 D VAL 132 n 32 VAL 132 D ILE 133 n 33 ILE 133 D GLU 134 n 34 GLU 134 D GLU 135 n 35 GLU 135 D MET 136 n 36 MET 136 D SER 137 n 37 SER 137 D LEU 138 n 38 LEU 138 D PRO 139 n 39 PRO 139 D GLY 140 n 40 GLY 140 D ARG 141 n 41 ARG 141 D TRP 142 n 42 TRP 142 D LYS 143 n 43 LYS 143 D PRO 144 n 44 PRO 144 D LYS 145 n 45 LYS 145 D MET 146 n 46 MET 146 D ILE 147 n 47 ILE 147 D GLY 148 n 48 GLY 148 D GLY 149 n 49 GLY 149 D ILE 150 n 50 ILE 150 D GLY 151 n 51 GLY 151 D GLY 152 n 52 GLY 152 D PHE 153 n 53 PHE 153 D ILE 154 n 54 ILE 154 D LYS 155 n 55 LYS 155 D VAL 156 n 56 VAL 156 D ARG 157 n 57 ARG 157 D GLN 158 n 58 GLN 158 D TYR 159 n 59 TYR 159 D ASP 160 n 60 ASP 160 D GLN 161 n 61 GLN 161 D ILE 162 n 62 ILE 162 D ILE 163 n 63 ILE 163 D ILE 164 n 64 ILE 164 D GLU 165 n 65 GLU 165 D ILE 166 n 66 ILE 166 D ALA 167 n 67 ALA 167 D GLY 168 n 68 GLY 168 D HIS 169 n 69 HIS 169 D LYS 170 n 70 LYS 170 D ALA 171 n 71 ALA 171 D ILE 172 n 72 ILE 172 D GLY 173 n 73 GLY 173 D THR 174 n 74 THR 174 D VAL 175 n 75 VAL 175 D LEU 176 n 76 LEU 176 D VAL 177 n 77 VAL 177 D GLY 178 n 78 GLY 178 D PRO 179 n 79 PRO 179 D THR 180 n 80 THR 180 D PRO 181 n 81 PRO 181 D VAL 182 n 82 VAL 182 D ASN 183 n 83 ASN 183 D ILE 184 n 84 ILE 184 D ILE 185 n 85 ILE 185 D GLY 186 n 86 GLY 186 D ARG 187 n 87 ARG 187 D ASN 188 n 88 ASN 188 D LEU 189 n 89 LEU 189 D LEU 190 n 90 LEU 190 D THR 191 n 91 THR 191 D GLN 192 n 92 GLN 192 D ILE 193 n 93 ILE 193 D GLY 194 n 94 GLY 194 D ALA 195 n 95 ALA 195 D THR 196 n 96 THR 196 D LEU 197 n 97 LEU 197 D ASN 198 n 98 ASN 198 D PHE 199 n 99 PHE 199 D author_and_software_defined_assembly PISA 2 dimeric 5470 -28 9020 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 C N ILE 3 A N ILE 3 D O LEU 197 B O LEU 97 D O ASN 198 B O ASN 98 C N THR 96 A N THR 96 C O LEU 97 A O LEU 97 D N ILE 103 B N ILE 3 1 C PRO 79 -69.95 55.59 0.2480000 0.2120000 1.9 8.0 865 14514 6.0 Random 1 THROUGHOUT 1.0 ENGH & HUBER 1.9 8.0 105 1676 59 0 1512 1.9 25 1FFF 0.0750000 1 0.2680000 1.90 1.99 1 98.5 phasing AMoRE refinement X-PLOR 3.843 data collection ADSC data reduction DENZO data scaling SCALEPACK STRUCTURAL IMPLICATIONS OF DRUG RESISTANT MUTANTS OF HIV-1 PROTEASE : HIGH RESOLUTION CRYSTAL STRUCTURES OF THE MUTANT PROTEASE/SUBSTRATE ANALOG COMPLEXES. 1 N N 1 N N 2 N N 3 N N 3 N N The biological assembly is a dimer consisting of chains C and D C GLY 86 A GLY 86 HELX_P C THR 91 A THR 91 1 1 6 D GLY 186 B GLY 86 HELX_P D THR 191 B THR 91 1 2 6 HYDROLASE/HYDROLASE INHIBITOR HIV-1 PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX POL_HV1B5 UNP 1 69 P04587 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 69 167 1FFF 1 99 P04587 C 1 1 99 69 167 1FFF 101 199 P04587 D 1 1 99 1 GLN engineered mutation LYS 7 1FFF C P04587 UNP 75 7 1 ASP engineered mutation ASN 30 1FFF C P04587 UNP 98 30 1 LEU engineered mutation ILE 33 1FFF C P04587 UNP 101 33 1 LEU engineered mutation ILE 63 1FFF C P04587 UNP 131 63 1 CYS engineered mutation ALA 67 1FFF C P04587 UNP 135 67 1 CYS engineered mutation ALA 95 1FFF C P04587 UNP 163 95 2 GLN engineered mutation LYS 107 1FFF D P04587 UNP 75 7 2 ASP engineered mutation ASN 130 1FFF D P04587 UNP 98 30 2 LEU engineered mutation ILE 133 1FFF D P04587 UNP 101 33 2 LEU engineered mutation ILE 163 1FFF D P04587 UNP 131 63 2 CYS engineered mutation ALA 167 1FFF D P04587 UNP 135 67 2 CYS engineered mutation ALA 195 1FFF D P04587 UNP 163 95 4 anti-parallel anti-parallel anti-parallel C GLN 2 A GLN 2 C THR 4 A THR 4 D THR 196 B THR 96 D ASN 198 B ASN 98 C THR 96 A THR 96 C ASN 98 A ASN 98 D GLN 102 B GLN 2 D THR 104 B THR 4 BINDING SITE FOR RESIDUE 0Q4 D 401 D 0Q4 401 Software 28 C TRP 6 A TRP 6 28 3_655 C ARG 8 A ARG 8 28 1_555 C ASP 25 A ASP 25 28 1_555 C GLY 27 A GLY 27 28 1_555 C ALA 28 A ALA 28 28 1_555 C ASP 29 A ASP 29 28 1_555 C ASN 30 A ASN 30 28 1_555 C VAL 32 A VAL 32 28 1_555 C GLY 48 A GLY 48 28 1_555 C GLY 49 A GLY 49 28 1_555 C ILE 84 A ILE 84 28 1_555 D HOH 7 E HOH 28 1_555 D HOH 77 E HOH 28 1_555 D LEU 123 B LEU 23 28 1_555 D ASP 125 B ASP 25 28 1_555 D GLY 127 B GLY 27 28 1_555 D ALA 128 B ALA 28 28 1_555 D ASP 129 B ASP 29 28 1_555 D ASN 130 B ASN 30 28 1_555 D MET 146 B MET 46 28 1_555 D ILE 147 B ILE 47 28 1_555 D GLY 148 B GLY 48 28 1_555 D GLY 149 B GLY 49 28 1_555 D ILE 150 B ILE 50 28 1_555 D GLN 158 B GLN 58 28 1_555 D HOH 201 E HOH 28 1_555 D HOH 207 E HOH 28 1_555 D HOH 249 E HOH 28 1_555 19 orthorhombic P 21 21 21