1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Fowler, C.A. Tian, F. Al-Hashimi, H.M. Prestegard, J.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 304 447 460 10.1006/jmbi.2000.4199 11090286 Rapid determination of protein folds using residual dipolar couplings. 2000 NE FEBS Lett. FEBLAL 0165 0014-5793 388 66 72 10.1016/0014-5793(96)00512-1 NMR Investigations of the Structural Properties of the Nodulation Protein, NodF, from Rhizobium Leguminosarum and its Homology with Eschericia Coli Acyl Carrier Protein 1996 10.2210/pdb1fh1/pdb pdb_00001fh1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 9951.211 NODULATION PROTEIN F 1 man polymer NODF no no MADQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDV VEAVRGLLTKEV MADQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDV VEAVRGLLTKEV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rhizobium Escherichia Escherichia coli sample 384 Rhizobium leguminosarum 469008 Escherichia coli BL21(DE3) BL21(DE3) PMP2301 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-01-17 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2000-07-30 REL Assignments were made using double and triple-resonance NMR spectroscopy. Dipolar couplings were measured and used to produce the protein backbone fold. 1 0 6.1 ambient 298 K 0 6.1 ambient 298 K secondary structural elements (3 helices) were identified. these were split into smaller fragments and individual fragments were oriented using residual dipolar coupling data and the program Orderten_SVD (Losonczi, et al., J. Magn. Res., 138, 334-342, 1999). The fragments were reassembled and then positioned spatially by translation using a limited set of NOEs to produce a backbone fold of the nodF protein. THERE ARE N-CA-C ANGLE ERRORS (AS COMPARED TO THE STANDARD DICTIONARY) AT RESIDUES 13 AND 80. RESIDUE 80 LIES SOMEWHAT OUTSIDE ALLOWED RAMACHANDRAN SPACE. THESE SITES ARE POSITIONS WHERE ORIENTED HELICAL FRAGMENTS WERE REASSEMBLED INTO COMPLETE HELICES DURING DETERMINATION OF OF THE BACKBONE FOLD AND ANY SMALLER LOCAL DISTORTIONS FROM IDEALITY ARE EXPECTED TO CONCENTRATE HERE. THE STRUCTURE PRESENTED HERE CONTAINS ONLY COORDINATES FOR BACKBONE ATOMS INVOLVED IN SECONDARY STRUCTURE. THE STRUCTURE IS THE AVERAGE OF AN ENSEMBLE WITH A HEAVY ATOM RMSD OF 2.4 ANGSTROMS. CB POSITIONS COME FROM POLYALANINE HELICES USED TO MODEL THE BACKBONE. other 2.5 mM NodF isotropic U-15N,13C 200 mM phosphate buffer, pH 6.1 90% H2O/10% D2O 1.0 mM NodF aligned U-15N,13C 200 mM phosphate buffer, pH 6.1 20 mg/mL Pf1 bacteriophage 90% H2O/10% D2O MSI processing Felix 98 Losonczi data analysis Orderten_SVD Fowler structure solution POSE Fowler refinement POSE 800 Varian INOVA 600 Varian INOVA 500 Varian INOVA n 1 1 A n 2 2 A n 3 3 A n 4 4 A LEU 5 n 5 LEU 5 A THR 6 n 6 THR 6 A LEU 7 n 7 LEU 7 A GLU 8 n 8 GLU 8 A ILE 9 n 9 ILE 9 A ILE 10 n 10 ILE 10 A SER 11 n 11 SER 11 A ALA 12 n 12 ALA 12 A ILE 13 n 13 ILE 13 A ASN 14 n 14 ASN 14 A LYS 15 n 15 LYS 15 A LEU 16 n 16 LEU 16 A VAL 17 n 17 VAL 17 A n 18 18 A n 19 19 A n 20 20 A n 21 21 A n 22 22 A n 23 23 A n 24 24 A n 25 25 A n 26 26 A n 27 27 A n 28 28 A n 29 29 A n 30 30 A n 31 31 A n 32 32 A n 33 33 A n 34 34 A n 35 35 A n 36 36 A n 37 37 A n 38 38 A n 39 39 A n 40 40 A n 41 41 A n 42 42 A n 43 43 A n 44 44 A n 45 45 A LEU 46 n 46 LEU 46 A GLY 47 n 47 GLY 47 A LEU 48 n 48 LEU 48 A ALA 49 n 49 ALA 49 A ASP 50 n 50 ASP 50 A VAL 51 n 51 VAL 51 A LEU 52 n 52 LEU 52 A TRP 53 n 53 TRP 53 A ASP 54 n 54 ASP 54 A LEU 55 n 55 LEU 55 A GLU 56 n 56 GLU 56 A GLN 57 n 57 GLN 57 A LEU 58 n 58 LEU 58 A n 59 59 A n 60 60 A n 61 61 A n 62 62 A n 63 63 A n 64 64 A n 65 65 A n 66 66 A n 67 67 A n 68 68 A n 69 69 A n 70 70 A n 71 71 A n 72 72 A n 73 73 A n 74 74 A n 75 75 A ASN 76 n 76 ASN 76 A ILE 77 n 77 ILE 77 A GLY 78 n 78 GLY 78 A ASP 79 n 79 ASP 79 A VAL 80 n 80 VAL 80 A VAL 81 n 81 VAL 81 A GLU 82 n 82 GLU 82 A ALA 83 n 83 ALA 83 A VAL 84 n 84 VAL 84 A ARG 85 n 85 ARG 85 A GLY 86 n 86 GLY 86 A n 87 87 A n 88 88 A n 89 89 A n 90 90 A n 91 91 A n 92 92 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG LEU 5 A CG LEU 5 1 Y 1 A CD1 LEU 5 A CD1 LEU 5 1 Y 1 A CD2 LEU 5 A CD2 LEU 5 1 Y 1 A OG1 THR 6 A OG1 THR 6 1 Y 1 A CG2 THR 6 A CG2 THR 6 1 Y 1 A CG LEU 7 A CG LEU 7 1 Y 1 A CD1 LEU 7 A CD1 LEU 7 1 Y 1 A CD2 LEU 7 A CD2 LEU 7 1 Y 1 A CG GLU 8 A CG GLU 8 1 Y 1 A CD GLU 8 A CD GLU 8 1 Y 1 A OE1 GLU 8 A OE1 GLU 8 1 Y 1 A OE2 GLU 8 A OE2 GLU 8 1 Y 1 A CG1 ILE 9 A CG1 ILE 9 1 Y 1 A CG2 ILE 9 A CG2 ILE 9 1 Y 1 A CD1 ILE 9 A CD1 ILE 9 1 Y 1 A CG1 ILE 10 A CG1 ILE 10 1 Y 1 A CG2 ILE 10 A CG2 ILE 10 1 Y 1 A CD1 ILE 10 A CD1 ILE 10 1 Y 1 A OG SER 11 A OG SER 11 1 Y 1 A CG1 ILE 13 A CG1 ILE 13 1 Y 1 A CG2 ILE 13 A CG2 ILE 13 1 Y 1 A CD1 ILE 13 A CD1 ILE 13 1 Y 1 A CG ASN 14 A CG ASN 14 1 Y 1 A OD1 ASN 14 A OD1 ASN 14 1 Y 1 A ND2 ASN 14 A ND2 ASN 14 1 Y 1 A CG LYS 15 A CG LYS 15 1 Y 1 A CD LYS 15 A CD LYS 15 1 Y 1 A CE LYS 15 A CE LYS 15 1 Y 1 A NZ LYS 15 A NZ LYS 15 1 Y 1 A CG LEU 16 A CG LEU 16 1 Y 1 A CD1 LEU 16 A CD1 LEU 16 1 Y 1 A CD2 LEU 16 A CD2 LEU 16 1 Y 1 A CG1 VAL 17 A CG1 VAL 17 1 Y 1 A CG2 VAL 17 A CG2 VAL 17 1 Y 1 A CG LEU 46 A CG LEU 46 1 Y 1 A CD1 LEU 46 A CD1 LEU 46 1 Y 1 A CD2 LEU 46 A CD2 LEU 46 1 Y 1 A CG LEU 48 A CG LEU 48 1 Y 1 A CD1 LEU 48 A CD1 LEU 48 1 Y 1 A CD2 LEU 48 A CD2 LEU 48 1 Y 1 A CG ASP 50 A CG ASP 50 1 Y 1 A OD1 ASP 50 A OD1 ASP 50 1 Y 1 A OD2 ASP 50 A OD2 ASP 50 1 Y 1 A CG1 VAL 51 A CG1 VAL 51 1 Y 1 A CG2 VAL 51 A CG2 VAL 51 1 Y 1 A CG LEU 52 A CG LEU 52 1 Y 1 A CD1 LEU 52 A CD1 LEU 52 1 Y 1 A CD2 LEU 52 A CD2 LEU 52 1 Y 1 A CG TRP 53 A CG TRP 53 1 Y 1 A CD1 TRP 53 A CD1 TRP 53 1 Y 1 A CD2 TRP 53 A CD2 TRP 53 1 Y 1 A NE1 TRP 53 A NE1 TRP 53 1 Y 1 A CE2 TRP 53 A CE2 TRP 53 1 Y 1 A CE3 TRP 53 A CE3 TRP 53 1 Y 1 A CZ2 TRP 53 A CZ2 TRP 53 1 Y 1 A CZ3 TRP 53 A CZ3 TRP 53 1 Y 1 A CH2 TRP 53 A CH2 TRP 53 1 Y 1 A CG ASP 54 A CG ASP 54 1 Y 1 A OD1 ASP 54 A OD1 ASP 54 1 Y 1 A OD2 ASP 54 A OD2 ASP 54 1 Y 1 A CG LEU 55 A CG LEU 55 1 Y 1 A CD1 LEU 55 A CD1 LEU 55 1 Y 1 A CD2 LEU 55 A CD2 LEU 55 1 Y 1 A CG GLU 56 A CG GLU 56 1 Y 1 A CD GLU 56 A CD GLU 56 1 Y 1 A OE1 GLU 56 A OE1 GLU 56 1 Y 1 A OE2 GLU 56 A OE2 GLU 56 1 Y 1 A CG GLN 57 A CG GLN 57 1 Y 1 A CD GLN 57 A CD GLN 57 1 Y 1 A OE1 GLN 57 A OE1 GLN 57 1 Y 1 A NE2 GLN 57 A NE2 GLN 57 1 Y 1 A CG LEU 58 A CG LEU 58 1 Y 1 A CD1 LEU 58 A CD1 LEU 58 1 Y 1 A CD2 LEU 58 A CD2 LEU 58 1 Y 1 A CG ASN 76 A CG ASN 76 1 Y 1 A OD1 ASN 76 A OD1 ASN 76 1 Y 1 A ND2 ASN 76 A ND2 ASN 76 1 Y 1 A CG1 ILE 77 A CG1 ILE 77 1 Y 1 A CG2 ILE 77 A CG2 ILE 77 1 Y 1 A CD1 ILE 77 A CD1 ILE 77 1 Y 1 A CG ASP 79 A CG ASP 79 1 Y 1 A OD1 ASP 79 A OD1 ASP 79 1 Y 1 A OD2 ASP 79 A OD2 ASP 79 1 Y 1 A CG1 VAL 80 A CG1 VAL 80 1 Y 1 A CG2 VAL 80 A CG2 VAL 80 1 Y 1 A CG1 VAL 81 A CG1 VAL 81 1 Y 1 A CG2 VAL 81 A CG2 VAL 81 1 Y 1 A CG GLU 82 A CG GLU 82 1 Y 1 A CD GLU 82 A CD GLU 82 1 Y 1 A OE1 GLU 82 A OE1 GLU 82 1 Y 1 A OE2 GLU 82 A OE2 GLU 82 1 Y 1 A CG1 VAL 84 A CG1 VAL 84 1 Y 1 A CG2 VAL 84 A CG2 VAL 84 1 Y 1 A CG ARG 85 A CG ARG 85 1 Y 1 A CD ARG 85 A CD ARG 85 1 Y 1 A NE ARG 85 A NE ARG 85 1 Y 1 A CZ ARG 85 A CZ ARG 85 1 Y 1 A NH1 ARG 85 A NH1 ARG 85 1 Y 1 A NH2 ARG 85 A NH2 ARG 85 1 Y 1 A MET 1 A MET 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A ASP 3 A ASP 3 1 Y 1 A GLN 4 A GLN 4 1 Y 1 A LYS 18 A LYS 18 1 Y 1 A ALA 19 A ALA 19 1 Y 1 A GLU 20 A GLU 20 1 Y 1 A ASN 21 A ASN 21 1 Y 1 A GLY 22 A GLY 22 1 Y 1 A GLU 23 A GLU 23 1 Y 1 A ARG 24 A ARG 24 1 Y 1 A THR 25 A THR 25 1 Y 1 A SER 26 A SER 26 1 Y 1 A VAL 27 A VAL 27 1 Y 1 A ALA 28 A ALA 28 1 Y 1 A LEU 29 A LEU 29 1 Y 1 A GLY 30 A GLY 30 1 Y 1 A GLU 31 A GLU 31 1 Y 1 A ILE 32 A ILE 32 1 Y 1 A THR 33 A THR 33 1 Y 1 A THR 34 A THR 34 1 Y 1 A ASP 35 A ASP 35 1 Y 1 A THR 36 A THR 36 1 Y 1 A GLU 37 A GLU 37 1 Y 1 A LEU 38 A LEU 38 1 Y 1 A THR 39 A THR 39 1 Y 1 A SER 40 A SER 40 1 Y 1 A LEU 41 A LEU 41 1 Y 1 A GLY 42 A GLY 42 1 Y 1 A ILE 43 A ILE 43 1 Y 1 A ASP 44 A ASP 44 1 Y 1 A SER 45 A SER 45 1 Y 1 A TYR 59 A TYR 59 1 Y 1 A GLY 60 A GLY 60 1 Y 1 A ILE 61 A ILE 61 1 Y 1 A LYS 62 A LYS 62 1 Y 1 A ILE 63 A ILE 63 1 Y 1 A GLU 64 A GLU 64 1 Y 1 A MET 65 A MET 65 1 Y 1 A ASN 66 A ASN 66 1 Y 1 A THR 67 A THR 67 1 Y 1 A ALA 68 A ALA 68 1 Y 1 A ASP 69 A ASP 69 1 Y 1 A ALA 70 A ALA 70 1 Y 1 A TRP 71 A TRP 71 1 Y 1 A SER 72 A SER 72 1 Y 1 A ASN 73 A ASN 73 1 Y 1 A LEU 74 A LEU 74 1 Y 1 A ASN 75 A ASN 75 1 Y 1 A LEU 87 A LEU 87 1 Y 1 A LEU 88 A LEU 88 1 Y 1 A THR 89 A THR 89 1 Y 1 A LYS 90 A LYS 90 1 Y 1 A GLU 91 A GLU 91 1 Y 1 A VAL 92 A VAL 92 1 Y 1 A CA ASP 50 PLANAR 1 A A O CB LEU ILE 7 10 1.11 1 A A O H LEU GLU 52 56 1.34 1 A A O H VAL VAL 81 84 1.35 1 A A O H GLU SER 8 11 1.45 1 A A O N VAL ALA 81 83 1.74 1 A A O N GLU SER 8 11 1.88 1 A A O CA LEU ILE 7 10 1.95 1 A A C N GLU ILE 8 10 2.05 1 A A O N LEU ILE 7 10 2.13 1 -25.86 2.70 111.00 85.14 A A A N CA C ILE ILE ILE 9 9 9 N 1 -23.01 2.30 110.80 87.79 A A A N CA CB ILE ILE ILE 13 13 13 N 1 43.89 2.70 111.00 154.89 A A A N CA C ILE ILE ILE 13 13 13 N 1 29.38 2.70 111.00 140.38 A A A N CA C ASP ASP ASP 50 50 50 N 1 20.15 1.80 110.60 130.75 A A A N CA CB TRP TRP TRP 53 53 53 N 1 -52.02 2.20 111.50 59.48 A A A N CA CB VAL VAL VAL 80 80 80 N 1 43.47 2.70 111.00 154.47 A A A N CA C VAL VAL VAL 80 80 80 N 1 -19.12 1.80 110.60 91.48 A A A N CA CB GLU GLU GLU 82 82 82 N 1 A ASP 50 -99.36 -89.30 1 A TRP 53 -44.84 -80.70 1 A VAL 80 145.50 7.41 1 A GLU 82 -22.06 -24.02 BACKBONE FOLD OF NODF 1 N N A LEU 5 A LEU 5 HELX_P A VAL 17 A VAL 17 1 1 13 A ASP 50 A ASP 50 HELX_P A LEU 58 A LEU 58 1 2 9 A VAL 81 A VAL 81 HELX_P A GLY 86 A GLY 86 1 3 6 LIPID BINDING PROTEIN ROOT NODULATION FACTOR, PROTEIN BACKBONE FOLD, LIPID BINDING PROTEIN NODF_RHILV UNP 1 1 P04685 MADQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDV VEAVRGLLTKEV 1 92 1FH1 1 92 P04685 A 1 1 92 1 P 1