0.015784 0.009113 0.000000 0.000000 0.018226 0.000000 0.000000 0.000000 0.030845 0.00000 0.00000 0.00000 Min, T. Ergenekan, C.E. Eidsness, M.K. Ichiye, T. Kang, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90 90 120 63.355 63.355 32.420 C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe 2 55.845 FE (II) ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N N N 9 N O N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N N N 19 S C N 20 N C N 21 N O N 22 N C N 23 N C N 24 N O N 25 N O N 26 N O N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N N N 35 R C N 36 N C N 37 N O N 38 N C N 39 N S N 40 N O N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N FE N 49 N N N 50 S C N 51 N C N 52 N O N 53 N C N 54 N C N 55 N C N 56 N O N 57 N N N 58 N O N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N N N 70 S C N 71 N C N 72 N O N 73 N C N 74 N C N 75 N C N 76 N O N 77 N O N 78 N O N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 N C N 90 N C N 91 N O N 92 N O N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N O N 99 N H N 100 N H N 101 N N N 102 S C N 103 N C N 104 N O N 105 S C N 106 N C N 107 N C N 108 N C N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N C N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 S C N 147 N C N 148 N O N 149 N C N 150 N C N 151 N C N 152 N C N 153 N N N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N S N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N N N 191 S C N 192 N C N 193 N O N 194 N C Y 195 N C Y 196 N C Y 197 N C Y 198 N C Y 199 N C Y 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N N N 214 S C N 215 N C N 216 N O N 217 N C N 218 N C N 219 N C N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 R C N 235 N O N 236 N C N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N N Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N C Y 284 N C N 285 N O N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C N 303 N C N 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N doub N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing Y 189 N doub Y 190 N sing Y 191 N sing N 192 N sing Y 193 N doub N 194 N sing Y 195 N doub N 196 N sing Y 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing Y 245 N doub Y 246 N sing Y 247 N sing N 248 N sing Y 249 N doub Y 250 N sing Y 251 N sing N 252 N sing Y 253 N sing Y 254 N doub N 255 N sing Y 256 N doub N 257 N sing Y 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing Y 273 N doub Y 274 N sing Y 275 N sing N 276 N sing Y 277 N doub N 278 N sing Y 279 N doub N 280 N sing Y 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing US Protein Sci. PRCIEI 0795 0961-8368 10 613 621 11344329 Leucine 41 is a gate for water entry in the reduction of Clostridium pasteurianum rubredoxin. 2001 10.2210/pdb1fhm/pdb pdb_00001fhm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 103 1 IMAGE PLATE 1999-06-28 FUJI SINGLE WAVELENGTH M x-ray 1 1.072 1.0 BL1-5 SSRL 1.072 SYNCHROTRON SSRL BEAMLINE BL1-5 REDUCED 6051.611 RUBREDOXIN 1 man polymer 55.845 FE (II) ION 1 syn non-polymer 18.015 water 77 nat water RD no no MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Clostridium Escherichia sample 1501 Clostridium pasteurianum 562 Escherichia coli 5 2.07 40.51 VAPOR DIFFUSION, HANGING DROP 4.6 2M ammonium sulfate, 0.1M sodium acetate, 0.1 g sodium dithionite, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 diffrn_detector pdbx_unobs_or_zero_occ_residues chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_residues struct_conn struct_site repository Initial release Version format compliance Version format compliance Advisory Data collection Advisory Data collection Database references Derived calculations 1 0 2001-03-14 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-04-18 1 4 2024-02-07 _diffrn_detector.detector _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id X-RAY CRYSTAL STRUCTURE OF CLOSTRIDIUM PASTEURIANUM RUBREDOXIN, oxidized form RCSB Y RCSB 2000-08-02 REL FE2 FE (II) ION HOH water FE 55 2 FE2 FE2 55 A TIP 101 3 HOH HOH 101 A TIP 102 3 HOH HOH 102 A TIP 104 3 HOH HOH 104 A TIP 105 3 HOH HOH 105 A TIP 106 3 HOH HOH 106 A TIP 107 3 HOH HOH 107 A TIP 108 3 HOH HOH 108 A TIP 109 3 HOH HOH 109 A TIP 110 3 HOH HOH 110 A TIP 111 3 HOH HOH 111 A TIP 114 3 HOH HOH 114 A TIP 115 3 HOH HOH 115 A TIP 116 3 HOH HOH 116 A TIP 117 3 HOH HOH 117 A TIP 119 3 HOH HOH 119 A TIP 121 3 HOH HOH 121 A TIP 122 3 HOH HOH 122 A TIP 126 3 HOH HOH 126 A TIP 127 3 HOH HOH 127 A TIP 129 3 HOH HOH 129 A TIP 131 3 HOH HOH 131 A TIP 133 3 HOH HOH 133 A TIP 136 3 HOH HOH 136 A TIP 137 3 HOH HOH 137 A TIP 142 3 HOH HOH 142 A TIP 144 3 HOH HOH 144 A TIP 147 3 HOH HOH 147 A TIP 149 3 HOH HOH 149 A TIP 151 3 HOH HOH 151 A TIP 155 3 HOH HOH 155 A TIP 156 3 HOH HOH 156 A TIP 157 3 HOH HOH 157 A TIP 158 3 HOH HOH 158 A TIP 159 3 HOH HOH 159 A TIP 160 3 HOH HOH 160 A TIP 161 3 HOH HOH 161 A TIP 162 3 HOH HOH 162 A TIP 171 3 HOH HOH 171 A TIP 175 3 HOH HOH 175 A TIP 179 3 HOH HOH 179 A TIP 181 3 HOH HOH 181 A TIP 191 3 HOH HOH 191 A TIP 225 3 HOH HOH 225 A TIP 232 3 HOH HOH 232 A TIP 237 3 HOH HOH 237 A TIP 259 3 HOH HOH 259 A TIP 265 3 HOH HOH 265 A TIP 274 3 HOH HOH 274 A TIP 278 3 HOH HOH 278 A TIP 282 3 HOH HOH 282 A TIP 283 3 HOH HOH 283 A TIP 301 3 HOH HOH 301 A TIP 306 3 HOH HOH 306 A TIP 313 3 HOH HOH 313 A TIP 315 3 HOH HOH 315 A TIP 322 3 HOH HOH 322 A TIP 338 3 HOH HOH 338 A TIP 343 3 HOH HOH 343 A TIP 344 3 HOH HOH 344 A TIP 348 3 HOH HOH 348 A TIP 351 3 HOH HOH 351 A TIP 352 3 HOH HOH 352 A TIP 437 3 HOH HOH 437 A TIP 556 3 HOH HOH 556 A TIP 559 3 HOH HOH 559 A TIP 561 3 HOH HOH 561 A TIP 702 3 HOH HOH 702 A TIP 744 3 HOH HOH 744 A TIP 749 3 HOH HOH 749 A TIP 759 3 HOH HOH 759 A TIP 842 3 HOH HOH 842 A TIP 860 3 HOH HOH 860 A TIP 1103 3 HOH HOH 1103 A TIP 1128 3 HOH HOH 1128 A TIP 1317 3 HOH HOH 1317 A TIP 1423 3 HOH HOH 1423 A TIP 1557 3 HOH HOH 1557 A MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A LYS 3 n 3 LYS 3 A TYR 4 n 4 TYR 4 A THR 5 n 5 THR 5 A CYS 6 n 6 CYS 6 A THR 7 n 7 THR 7 A VAL 8 n 8 VAL 8 A CYS 9 n 9 CYS 9 A GLY 10 n 10 GLY 10 A TYR 11 n 11 TYR 11 A ILE 12 n 12 ILE 12 A TYR 13 n 13 TYR 13 A ASN 14 n 14 ASN 14 A PRO 15 n 15 PRO 15 A GLU 16 n 16 GLU 16 A ASP 17 n 17 ASP 17 A GLY 18 n 18 GLY 18 A ASP 19 n 19 ASP 19 A PRO 20 n 20 PRO 20 A ASP 21 n 21 ASP 21 A ASN 22 n 22 ASN 22 A GLY 23 n 23 GLY 23 A VAL 24 n 24 VAL 24 A ASN 25 n 25 ASN 25 A PRO 26 n 26 PRO 26 A GLY 27 n 27 GLY 27 A THR 28 n 28 THR 28 A ASP 29 n 29 ASP 29 A PHE 30 n 30 PHE 30 A LYS 31 n 31 LYS 31 A ASP 32 n 32 ASP 32 A ILE 33 n 33 ILE 33 A PRO 34 n 34 PRO 34 A ASP 35 n 35 ASP 35 A ASP 36 n 36 ASP 36 A TRP 37 n 37 TRP 37 A VAL 38 n 38 VAL 38 A CYS 39 n 39 CYS 39 A PRO 40 n 40 PRO 40 A LEU 41 n 41 LEU 41 A CYS 42 n 42 CYS 42 A GLY 43 n 43 GLY 43 A VAL 44 n 44 VAL 44 A GLY 45 n 45 GLY 45 A LYS 46 n 46 LYS 46 A ASP 47 n 47 ASP 47 A GLN 48 n 48 GLN 48 A PHE 49 n 49 PHE 49 A GLU 50 n 50 GLU 50 A GLU 51 n 51 GLU 51 A VAL 52 n 52 VAL 52 A GLU 53 n 53 GLU 53 A n 54 54 A author_defined_assembly 1 monomeric A CYS 6 A SG CYS 6 1_555 A FE2 55 B FE FE2 1_555 A CYS 9 A SG CYS 9 1_555 112.3 A CYS 6 A SG CYS 6 1_555 A FE2 55 B FE FE2 1_555 A CYS 39 A SG CYS 39 1_555 112.8 A CYS 9 A SG CYS 9 1_555 A FE2 55 B FE FE2 1_555 A CYS 39 A SG CYS 39 1_555 103.9 A CYS 6 A SG CYS 6 1_555 A FE2 55 B FE FE2 1_555 A CYS 42 A SG CYS 42 1_555 105.5 A CYS 9 A SG CYS 9 1_555 A FE2 55 B FE FE2 1_555 A CYS 42 A SG CYS 42 1_555 110.1 A CYS 39 A SG CYS 39 1_555 A FE2 55 B FE FE2 1_555 A CYS 42 A SG CYS 42 1_555 112.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 13 A N TYR 13 A O TYR 4 A O TYR 4 A N THR 5 A N THR 5 A O GLU 50 A O GLU 50 1 A HOH 556 C HOH 1 A GLU 54 A GLU 54 1 Y 1 A HOH 1103 C HOH 0 N 1 A HOH 1128 C HOH 0 N 1 A HOH 1317 C HOH 0 N 1 A HOH 1423 C HOH 0 N 1 A HOH 1557 C HOH 0 N 1 A A CB O ILE HOH 12 171 1.87 1 A A O O HOH HOH 121 131 2.03 1 A A OE2 O GLU HOH 50 265 2.08 1 21.47 2.80 113.90 135.37 A A A CB CG1 CD1 ILE ILE ILE 12 12 12 N 0.1790000 1.5 10 9224 5206 97.3 1 2 1.5 10 77 490 1 0 412 0.02 3.079 1.078 1.5 10 1FHM 9224 9133 2 2 0.0470000 1 96.4 0.0470000 1.5 10 9224 96.4 model building X-PLOR refinement X-PLOR 3.851 data reduction DENZO data scaling SCALEPACK phasing X-PLOR X-RAY CRYSTAL STRUCTURE OF REDUCED RUBREDOXIN 1 N N 2 N N 3 N N A PRO 20 A PRO 20 HELX_P A GLY 23 A GLY 23 5 1 4 A ASP 29 A ASP 29 HELX_P A ILE 33 A ILE 33 5 2 5 metalc 2.384 A CYS 6 A SG CYS 6 1_555 A FE2 55 B FE FE2 1_555 metalc 2.369 A CYS 9 A SG CYS 9 1_555 A FE2 55 B FE FE2 1_555 metalc 2.394 A CYS 39 A SG CYS 39 1_555 A FE2 55 B FE FE2 1_555 metalc 2.306 A CYS 42 A SG CYS 42 1_555 A FE2 55 B FE FE2 1_555 ELECTRON TRANSPORT reduced, Cp Rd, rubredoxin, ELECTRON TRANSPORT RUBR_CLOPA UNP 1 1 P00268 MKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQFEEVEE 1 54 1FHM 1 54 P00268 A 1 1 54 3 anti-parallel anti-parallel A ILE 12 A ILE 12 A TYR 13 A TYR 13 A TYR 4 A TYR 4 A CYS 6 A CYS 6 A PHE 49 A PHE 49 A GLU 51 A GLU 51 BINDING SITE FOR RESIDUE FE2 A 55 A FE2 55 Software 4 A CYS 6 A CYS 6 4 1_555 A CYS 9 A CYS 9 4 1_555 A CYS 39 A CYS 39 4 1_555 A CYS 42 A CYS 42 4 1_555 146 H 3