0.01046
0.00604
0.00000
0.00000
0.01208
0.00000
0.00000
0.00000
0.00934
0.00000
0.00000
0.00000
Woo, E.J.
Dunwell, J.M.
Goodenough, P.W.
Marvier, A.C.
Pickersgill, R.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
95.593
95.593
107.109
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mn 2
54.938
MANGANESE (II) ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
1036
1040
10.1038/80954
11062559
Germin is a manganese containing homohexamer with oxalate oxidase and superoxide dismutase activities.
2000
NE
FEBS Lett.
FEBLAL
0165
0014-5793
437
87
90
10.1016/S0014-5793(98)01203-4
Barley Oxalate Oxidase is a Hexameric Protein Related to Seed Storage Proteins: Evidence from X-ray Crystallography
1998
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
CCD
1999-07-11
ADSC QUANTUM 4
IMAGE PLATE
1999-02-13
MACSCIENCE
SINGLE WAVELENGTH
M
x-ray
1
0.870
1.0
1.5418
1.0
PX9.6
SRS
0.870
SYNCHROTRON
SRS BEAMLINE PX9.6
1.5418
ROTATING ANODE
MACSCIENCE
21237.170
OXALATE OXIDASE
1.2.3.4
1
nat
polymer
54.938
MANGANESE (II) ION
1
syn
non-polymer
18.015
water
253
nat
water
GERMIN
no
no
TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA
PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI
VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGGS
TDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA
PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI
VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGGS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Hordeum
sample
4513
Hordeum vulgare
2
2.3
33
VAPOR DIFFUSION, HANGING DROP
5.0
2.2 M ammonium sulfate,
5% 2-propanol, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 301K
301
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
1
0
2001-05-01
1
1
2008-04-27
1
2
2011-07-13
The phaseolin (vicilin) trimer (2PHL) is structurally similar to the germin hexamer.
RCSB
Y
RCSB
2000-08-03
REL
REL
MN
MANGANESE (II) ION
HOH
water
The germin dimer is structurally related
to the 7S seed storage protein monomer
(eg phaseolin monomer). Each germin
monomer binds a single manganese ion.
IUM
202
2
MN
MN
202
A
WAT
203
3
HOH
HOH
203
A
WAT
204
3
HOH
HOH
204
A
WAT
205
3
HOH
HOH
205
A
WAT
206
3
HOH
HOH
206
A
WAT
207
3
HOH
HOH
207
A
WAT
208
3
HOH
HOH
208
A
WAT
209
3
HOH
HOH
209
A
WAT
210
3
HOH
HOH
210
A
WAT
211
3
HOH
HOH
211
A
WAT
212
3
HOH
HOH
212
A
WAT
213
3
HOH
HOH
213
A
WAT
214
3
HOH
HOH
214
A
WAT
215
3
HOH
HOH
215
A
WAT
216
3
HOH
HOH
216
A
WAT
217
3
HOH
HOH
217
A
WAT
218
3
HOH
HOH
218
A
WAT
219
3
HOH
HOH
219
A
WAT
220
3
HOH
HOH
220
A
WAT
221
3
HOH
HOH
221
A
WAT
222
3
HOH
HOH
222
A
WAT
223
3
HOH
HOH
223
A
WAT
224
3
HOH
HOH
224
A
WAT
225
3
HOH
HOH
225
A
WAT
226
3
HOH
HOH
226
A
WAT
227
3
HOH
HOH
227
A
WAT
228
3
HOH
HOH
228
A
WAT
229
3
HOH
HOH
229
A
WAT
230
3
HOH
HOH
230
A
WAT
231
3
HOH
HOH
231
A
WAT
232
3
HOH
HOH
232
A
WAT
233
3
HOH
HOH
233
A
WAT
234
3
HOH
HOH
234
A
WAT
235
3
HOH
HOH
235
A
WAT
236
3
HOH
HOH
236
A
WAT
237
3
HOH
HOH
237
A
WAT
238
3
HOH
HOH
238
A
WAT
239
3
HOH
HOH
239
A
WAT
240
3
HOH
HOH
240
A
WAT
241
3
HOH
HOH
241
A
WAT
242
3
HOH
HOH
242
A
WAT
243
3
HOH
HOH
243
A
WAT
244
3
HOH
HOH
244
A
WAT
245
3
HOH
HOH
245
A
WAT
246
3
HOH
HOH
246
A
WAT
247
3
HOH
HOH
247
A
WAT
248
3
HOH
HOH
248
A
WAT
249
3
HOH
HOH
249
A
WAT
250
3
HOH
HOH
250
A
WAT
251
3
HOH
HOH
251
A
WAT
252
3
HOH
HOH
252
A
WAT
253
3
HOH
HOH
253
A
WAT
254
3
HOH
HOH
254
A
WAT
255
3
HOH
HOH
255
A
WAT
256
3
HOH
HOH
256
A
WAT
257
3
HOH
HOH
257
A
WAT
258
3
HOH
HOH
258
A
WAT
259
3
HOH
HOH
259
A
WAT
260
3
HOH
HOH
260
A
WAT
261
3
HOH
HOH
261
A
WAT
262
3
HOH
HOH
262
A
WAT
263
3
HOH
HOH
263
A
WAT
264
3
HOH
HOH
264
A
WAT
265
3
HOH
HOH
265
A
WAT
266
3
HOH
HOH
266
A
WAT
267
3
HOH
HOH
267
A
WAT
268
3
HOH
HOH
268
A
WAT
269
3
HOH
HOH
269
A
WAT
270
3
HOH
HOH
270
A
WAT
271
3
HOH
HOH
271
A
WAT
272
3
HOH
HOH
272
A
WAT
273
3
HOH
HOH
273
A
WAT
274
3
HOH
HOH
274
A
WAT
275
3
HOH
HOH
275
A
WAT
276
3
HOH
HOH
276
A
WAT
277
3
HOH
HOH
277
A
WAT
278
3
HOH
HOH
278
A
WAT
279
3
HOH
HOH
279
A
WAT
280
3
HOH
HOH
280
A
WAT
281
3
HOH
HOH
281
A
WAT
282
3
HOH
HOH
282
A
WAT
283
3
HOH
HOH
283
A
WAT
284
3
HOH
HOH
284
A
WAT
285
3
HOH
HOH
285
A
WAT
286
3
HOH
HOH
286
A
WAT
287
3
HOH
HOH
287
A
WAT
288
3
HOH
HOH
288
A
WAT
289
3
HOH
HOH
289
A
WAT
290
3
HOH
HOH
290
A
WAT
291
3
HOH
HOH
291
A
WAT
292
3
HOH
HOH
292
A
WAT
293
3
HOH
HOH
293
A
WAT
294
3
HOH
HOH
294
A
WAT
295
3
HOH
HOH
295
A
WAT
296
3
HOH
HOH
296
A
WAT
297
3
HOH
HOH
297
A
WAT
298
3
HOH
HOH
298
A
WAT
299
3
HOH
HOH
299
A
WAT
300
3
HOH
HOH
300
A
WAT
301
3
HOH
HOH
301
A
WAT
302
3
HOH
HOH
302
A
WAT
303
3
HOH
HOH
303
A
WAT
304
3
HOH
HOH
304
A
WAT
305
3
HOH
HOH
305
A
WAT
306
3
HOH
HOH
306
A
WAT
307
3
HOH
HOH
307
A
WAT
308
3
HOH
HOH
308
A
WAT
309
3
HOH
HOH
309
A
WAT
310
3
HOH
HOH
310
A
WAT
311
3
HOH
HOH
311
A
WAT
312
3
HOH
HOH
312
A
WAT
313
3
HOH
HOH
313
A
WAT
314
3
HOH
HOH
314
A
WAT
315
3
HOH
HOH
315
A
WAT
316
3
HOH
HOH
316
A
WAT
317
3
HOH
HOH
317
A
WAT
318
3
HOH
HOH
318
A
WAT
319
3
HOH
HOH
319
A
WAT
320
3
HOH
HOH
320
A
WAT
321
3
HOH
HOH
321
A
WAT
322
3
HOH
HOH
322
A
WAT
323
3
HOH
HOH
323
A
WAT
324
3
HOH
HOH
324
A
WAT
325
3
HOH
HOH
325
A
WAT
326
3
HOH
HOH
326
A
WAT
327
3
HOH
HOH
327
A
WAT
328
3
HOH
HOH
328
A
WAT
329
3
HOH
HOH
329
A
WAT
330
3
HOH
HOH
330
A
WAT
331
3
HOH
HOH
331
A
WAT
332
3
HOH
HOH
332
A
WAT
333
3
HOH
HOH
333
A
WAT
334
3
HOH
HOH
334
A
WAT
335
3
HOH
HOH
335
A
WAT
336
3
HOH
HOH
336
A
WAT
337
3
HOH
HOH
337
A
WAT
338
3
HOH
HOH
338
A
WAT
339
3
HOH
HOH
339
A
WAT
340
3
HOH
HOH
340
A
WAT
341
3
HOH
HOH
341
A
WAT
342
3
HOH
HOH
342
A
WAT
343
3
HOH
HOH
343
A
WAT
344
3
HOH
HOH
344
A
WAT
345
3
HOH
HOH
345
A
WAT
346
3
HOH
HOH
346
A
WAT
347
3
HOH
HOH
347
A
WAT
348
3
HOH
HOH
348
A
WAT
349
3
HOH
HOH
349
A
WAT
350
3
HOH
HOH
350
A
WAT
351
3
HOH
HOH
351
A
WAT
352
3
HOH
HOH
352
A
WAT
353
3
HOH
HOH
353
A
WAT
354
3
HOH
HOH
354
A
WAT
355
3
HOH
HOH
355
A
WAT
356
3
HOH
HOH
356
A
WAT
357
3
HOH
HOH
357
A
WAT
358
3
HOH
HOH
358
A
WAT
359
3
HOH
HOH
359
A
WAT
360
3
HOH
HOH
360
A
WAT
361
3
HOH
HOH
361
A
WAT
362
3
HOH
HOH
362
A
WAT
363
3
HOH
HOH
363
A
WAT
364
3
HOH
HOH
364
A
WAT
365
3
HOH
HOH
365
A
WAT
366
3
HOH
HOH
366
A
WAT
367
3
HOH
HOH
367
A
WAT
368
3
HOH
HOH
368
A
WAT
369
3
HOH
HOH
369
A
WAT
370
3
HOH
HOH
370
A
WAT
371
3
HOH
HOH
371
A
WAT
372
3
HOH
HOH
372
A
WAT
373
3
HOH
HOH
373
A
WAT
374
3
HOH
HOH
374
A
WAT
375
3
HOH
HOH
375
A
WAT
376
3
HOH
HOH
376
A
WAT
377
3
HOH
HOH
377
A
WAT
378
3
HOH
HOH
378
A
WAT
379
3
HOH
HOH
379
A
WAT
380
3
HOH
HOH
380
A
WAT
381
3
HOH
HOH
381
A
WAT
382
3
HOH
HOH
382
A
WAT
383
3
HOH
HOH
383
A
WAT
384
3
HOH
HOH
384
A
WAT
385
3
HOH
HOH
385
A
WAT
386
3
HOH
HOH
386
A
WAT
387
3
HOH
HOH
387
A
WAT
388
3
HOH
HOH
388
A
WAT
389
3
HOH
HOH
389
A
WAT
390
3
HOH
HOH
390
A
WAT
391
3
HOH
HOH
391
A
WAT
392
3
HOH
HOH
392
A
WAT
393
3
HOH
HOH
393
A
WAT
394
3
HOH
HOH
394
A
WAT
395
3
HOH
HOH
395
A
WAT
396
3
HOH
HOH
396
A
WAT
397
3
HOH
HOH
397
A
WAT
398
3
HOH
HOH
398
A
WAT
399
3
HOH
HOH
399
A
WAT
400
3
HOH
HOH
400
A
WAT
401
3
HOH
HOH
401
A
WAT
402
3
HOH
HOH
402
A
WAT
403
3
HOH
HOH
403
A
WAT
404
3
HOH
HOH
404
A
WAT
405
3
HOH
HOH
405
A
WAT
406
3
HOH
HOH
406
A
WAT
407
3
HOH
HOH
407
A
WAT
408
3
HOH
HOH
408
A
WAT
409
3
HOH
HOH
409
A
WAT
410
3
HOH
HOH
410
A
WAT
411
3
HOH
HOH
411
A
WAT
412
3
HOH
HOH
412
A
WAT
413
3
HOH
HOH
413
A
WAT
414
3
HOH
HOH
414
A
WAT
415
3
HOH
HOH
415
A
WAT
416
3
HOH
HOH
416
A
WAT
417
3
HOH
HOH
417
A
WAT
418
3
HOH
HOH
418
A
WAT
419
3
HOH
HOH
419
A
WAT
420
3
HOH
HOH
420
A
WAT
421
3
HOH
HOH
421
A
WAT
422
3
HOH
HOH
422
A
WAT
423
3
HOH
HOH
423
A
WAT
424
3
HOH
HOH
424
A
WAT
425
3
HOH
HOH
425
A
WAT
426
3
HOH
HOH
426
A
WAT
427
3
HOH
HOH
427
A
WAT
428
3
HOH
HOH
428
A
WAT
429
3
HOH
HOH
429
A
WAT
430
3
HOH
HOH
430
A
WAT
431
3
HOH
HOH
431
A
WAT
432
3
HOH
HOH
432
A
WAT
433
3
HOH
HOH
433
A
WAT
434
3
HOH
HOH
434
A
WAT
435
3
HOH
HOH
435
A
WAT
436
3
HOH
HOH
436
A
WAT
437
3
HOH
HOH
437
A
WAT
438
3
HOH
HOH
438
A
WAT
439
3
HOH
HOH
439
A
WAT
440
3
HOH
HOH
440
A
WAT
441
3
HOH
HOH
441
A
WAT
442
3
HOH
HOH
442
A
WAT
443
3
HOH
HOH
443
A
WAT
444
3
HOH
HOH
444
A
WAT
445
3
HOH
HOH
445
A
WAT
446
3
HOH
HOH
446
A
WAT
447
3
HOH
HOH
447
A
WAT
448
3
HOH
HOH
448
A
WAT
449
3
HOH
HOH
449
A
WAT
450
3
HOH
HOH
450
A
WAT
451
3
HOH
HOH
451
A
WAT
452
3
HOH
HOH
452
A
WAT
453
3
HOH
HOH
453
A
WAT
454
3
HOH
HOH
454
A
WAT
455
3
HOH
HOH
455
A
THR
1
n
1
THR
1
A
ASP
2
n
2
ASP
2
A
PRO
3
n
3
PRO
3
A
ASP
4
n
4
ASP
4
A
PRO
5
n
5
PRO
5
A
LEU
6
n
6
LEU
6
A
GLN
7
n
7
GLN
7
A
ASP
8
n
8
ASP
8
A
PHE
9
n
9
PHE
9
A
CYS
10
n
10
CYS
10
A
VAL
11
n
11
VAL
11
A
ALA
12
n
12
ALA
12
A
ASP
13
n
13
ASP
13
A
LEU
14
n
14
LEU
14
A
ASP
15
n
15
ASP
15
A
GLY
16
n
16
GLY
16
A
LYS
17
n
17
LYS
17
A
ALA
18
n
18
ALA
18
A
VAL
19
n
19
VAL
19
A
SER
20
n
20
SER
20
A
VAL
21
n
21
VAL
21
A
ASN
22
n
22
ASN
22
A
GLY
23
n
23
GLY
23
A
HIS
24
n
24
HIS
24
A
THR
25
n
25
THR
25
A
CYS
26
n
26
CYS
26
A
LYS
27
n
27
LYS
27
A
PRO
28
n
28
PRO
28
A
MET
29
n
29
MET
29
A
SER
30
n
30
SER
30
A
GLU
31
n
31
GLU
31
A
ALA
32
n
32
ALA
32
A
GLY
33
n
33
GLY
33
A
ASP
34
n
34
ASP
34
A
ASP
35
n
35
ASP
35
A
PHE
36
n
36
PHE
36
A
LEU
37
n
37
LEU
37
A
PHE
38
n
38
PHE
38
A
SER
39
n
39
SER
39
A
SER
40
n
40
SER
40
A
LYS
41
n
41
LYS
41
A
LEU
42
n
42
LEU
42
A
THR
43
n
43
THR
43
A
LYS
44
n
44
LYS
44
A
ALA
45
n
45
ALA
45
A
GLY
46
n
46
GLY
46
A
ASN
47
n
47
ASN
47
A
THR
48
n
48
THR
48
A
SER
49
n
49
SER
49
A
THR
50
n
50
THR
50
A
PRO
51
n
51
PRO
51
A
ASN
52
n
52
ASN
52
A
GLY
53
n
53
GLY
53
A
SER
54
n
54
SER
54
A
ALA
55
n
55
ALA
55
A
VAL
56
n
56
VAL
56
A
THR
57
n
57
THR
57
A
GLU
58
n
58
GLU
58
A
LEU
59
n
59
LEU
59
A
ASP
60
n
60
ASP
60
A
VAL
61
n
61
VAL
61
A
ALA
62
n
62
ALA
62
A
GLU
63
n
63
GLU
63
A
TRP
64
n
64
TRP
64
A
PRO
65
n
65
PRO
65
A
GLY
66
n
66
GLY
66
A
THR
67
n
67
THR
67
A
ASN
68
n
68
ASN
68
A
THR
69
n
69
THR
69
A
LEU
70
n
70
LEU
70
A
GLY
71
n
71
GLY
71
A
VAL
72
n
72
VAL
72
A
SER
73
n
73
SER
73
A
MET
74
n
74
MET
74
A
ASN
75
n
75
ASN
75
A
ARG
76
n
76
ARG
76
A
VAL
77
n
77
VAL
77
A
ASP
78
n
78
ASP
78
A
PHE
79
n
79
PHE
79
A
ALA
80
n
80
ALA
80
A
PRO
81
n
81
PRO
81
A
GLY
82
n
82
GLY
82
A
GLY
83
n
83
GLY
83
A
THR
84
n
84
THR
84
A
ASN
85
n
85
ASN
85
A
PRO
86
n
86
PRO
86
A
PRO
87
n
87
PRO
87
A
HIS
88
n
88
HIS
88
A
ILE
89
n
89
ILE
89
A
HIS
90
n
90
HIS
90
A
PRO
91
n
91
PRO
91
A
ARG
92
n
92
ARG
92
A
ALA
93
n
93
ALA
93
A
THR
94
n
94
THR
94
A
GLU
95
n
95
GLU
95
A
ILE
96
n
96
ILE
96
A
GLY
97
n
97
GLY
97
A
MET
98
n
98
MET
98
A
VAL
99
n
99
VAL
99
A
MET
100
n
100
MET
100
A
LYS
101
n
101
LYS
101
A
GLY
102
n
102
GLY
102
A
GLU
103
n
103
GLU
103
A
LEU
104
n
104
LEU
104
A
LEU
105
n
105
LEU
105
A
VAL
106
n
106
VAL
106
A
GLY
107
n
107
GLY
107
A
ILE
108
n
108
ILE
108
A
LEU
109
n
109
LEU
109
A
GLY
110
n
110
GLY
110
A
SER
111
n
111
SER
111
A
LEU
112
n
112
LEU
112
A
ASP
113
n
113
ASP
113
A
SER
114
n
114
SER
114
A
GLY
115
n
115
GLY
115
A
ASN
116
n
116
ASN
116
A
LYS
117
n
117
LYS
117
A
LEU
118
n
118
LEU
118
A
TYR
119
n
119
TYR
119
A
SER
120
n
120
SER
120
A
ARG
121
n
121
ARG
121
A
VAL
122
n
122
VAL
122
A
VAL
123
n
123
VAL
123
A
ARG
124
n
124
ARG
124
A
ALA
125
n
125
ALA
125
A
GLY
126
n
126
GLY
126
A
GLU
127
n
127
GLU
127
A
THR
128
n
128
THR
128
A
PHE
129
n
129
PHE
129
A
VAL
130
n
130
VAL
130
A
ILE
131
n
131
ILE
131
A
PRO
132
n
132
PRO
132
A
ARG
133
n
133
ARG
133
A
GLY
134
n
134
GLY
134
A
LEU
135
n
135
LEU
135
A
MET
136
n
136
MET
136
A
HIS
137
n
137
HIS
137
A
PHE
138
n
138
PHE
138
A
GLN
139
n
139
GLN
139
A
PHE
140
n
140
PHE
140
A
ASN
141
n
141
ASN
141
A
VAL
142
n
142
VAL
142
A
GLY
143
n
143
GLY
143
A
LYS
144
n
144
LYS
144
A
THR
145
n
145
THR
145
A
GLU
146
n
146
GLU
146
A
ALA
147
n
147
ALA
147
A
TYR
148
n
148
TYR
148
A
MET
149
n
149
MET
149
A
VAL
150
n
150
VAL
150
A
VAL
151
n
151
VAL
151
A
SER
152
n
152
SER
152
A
PHE
153
n
153
PHE
153
A
ASN
154
n
154
ASN
154
A
SER
155
n
155
SER
155
A
GLN
156
n
156
GLN
156
A
ASN
157
n
157
ASN
157
A
PRO
158
n
158
PRO
158
A
GLY
159
n
159
GLY
159
A
ILE
160
n
160
ILE
160
A
VAL
161
n
161
VAL
161
A
PHE
162
n
162
PHE
162
A
VAL
163
n
163
VAL
163
A
PRO
164
n
164
PRO
164
A
LEU
165
n
165
LEU
165
A
THR
166
n
166
THR
166
A
LEU
167
n
167
LEU
167
A
PHE
168
n
168
PHE
168
A
GLY
169
n
169
GLY
169
A
SER
170
n
170
SER
170
A
ASP
171
n
171
ASP
171
A
PRO
172
n
172
PRO
172
A
PRO
173
n
173
PRO
173
A
ILE
174
n
174
ILE
174
A
PRO
175
n
175
PRO
175
A
THR
176
n
176
THR
176
A
PRO
177
n
177
PRO
177
A
VAL
178
n
178
VAL
178
A
LEU
179
n
179
LEU
179
A
THR
180
n
180
THR
180
A
LYS
181
n
181
LYS
181
A
ALA
182
n
182
ALA
182
A
LEU
183
n
183
LEU
183
A
ARG
184
n
184
ARG
184
A
VAL
185
n
185
VAL
185
A
GLU
186
n
186
GLU
186
A
ALA
187
n
187
ALA
187
A
GLY
188
n
188
GLY
188
A
VAL
189
n
189
VAL
189
A
VAL
190
n
190
VAL
190
A
GLU
191
n
191
GLU
191
A
LEU
192
n
192
LEU
192
A
LEU
193
n
193
LEU
193
A
LYS
194
n
194
LYS
194
A
SER
195
n
195
SER
195
A
LYS
196
n
196
LYS
196
A
PHE
197
n
197
PHE
197
A
ALA
198
n
198
ALA
198
A
GLY
199
n
199
GLY
199
A
GLY
200
n
200
GLY
200
A
SER
201
n
201
SER
201
A
author_and_software_defined_assembly
PISA,PQS
6
hexameric
34040
-280
36900
A
HIS
90
A
NE2
HIS
90
1_555
A
MN
202
B
MN
MN
1_555
A
GLU
95
A
OE1
GLU
95
1_555
91.2
A
HIS
90
A
NE2
HIS
90
1_555
A
MN
202
B
MN
MN
1_555
A
HIS
137
A
NE2
HIS
137
1_555
97.4
A
GLU
95
A
OE1
GLU
95
1_555
A
MN
202
B
MN
MN
1_555
A
HIS
137
A
NE2
HIS
137
1_555
88.0
A
HIS
90
A
NE2
HIS
90
1_555
A
MN
202
B
MN
MN
1_555
A
HOH
213
C
O
HOH
1_555
79.1
A
GLU
95
A
OE1
GLU
95
1_555
A
MN
202
B
MN
MN
1_555
A
HOH
213
C
O
HOH
1_555
105.1
A
HIS
137
A
NE2
HIS
137
1_555
A
MN
202
B
MN
MN
1_555
A
HOH
213
C
O
HOH
1_555
166.4
A
HIS
90
A
NE2
HIS
90
1_555
A
MN
202
B
MN
MN
1_555
A
HIS
88
A
NE2
HIS
88
1_555
95.4
A
GLU
95
A
OE1
GLU
95
1_555
A
MN
202
B
MN
MN
1_555
A
HIS
88
A
NE2
HIS
88
1_555
166.7
A
HIS
137
A
NE2
HIS
137
1_555
A
MN
202
B
MN
MN
1_555
A
HIS
88
A
NE2
HIS
88
1_555
79.7
A
HOH
213
C
O
HOH
1_555
A
MN
202
B
MN
MN
1_555
A
HIS
88
A
NE2
HIS
88
1_555
87.6
A
HIS
90
A
NE2
HIS
90
1_555
A
MN
202
B
MN
MN
1_555
A
HOH
223
C
O
HOH
1_555
165.5
A
GLU
95
A
OE1
GLU
95
1_555
A
MN
202
B
MN
MN
1_555
A
HOH
223
C
O
HOH
1_555
82.4
A
HIS
137
A
NE2
HIS
137
1_555
A
MN
202
B
MN
MN
1_555
A
HOH
223
C
O
HOH
1_555
95.4
A
HOH
213
C
O
HOH
1_555
A
MN
202
B
MN
MN
1_555
A
HOH
223
C
O
HOH
1_555
89.9
A
HIS
88
A
NE2
HIS
88
1_555
A
MN
202
B
MN
MN
1_555
A
HOH
223
C
O
HOH
1_555
93.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-y,x-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-x+y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
107.1090000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_556
x-y,-y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
107.1090000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_556
-x,-x+y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
107.1090000000
A
N
LEU
59
A
N
LEU
59
A
O
MET
74
A
O
MET
74
A
N
PHE
79
A
N
PHE
79
A
O
ALA
147
A
O
ALA
147
A
N
SER
152
A
N
SER
152
A
O
ILE
96
A
O
ILE
96
A
N
GLY
97
A
N
GLY
97
A
O
PHE
129
A
O
PHE
129
A
N
VAL
123
A
N
VAL
123
A
O
LEU
104
A
O
LEU
104
A
N
GLY
107
A
N
GLY
107
A
O
PHE
138
A
O
PHE
138
A
O
GLN
139
A
O
GLN
139
A
N
ASN
85
A
N
ASN
85
A
O
ILE
89
A
O
ILE
89
A
N
VAL
161
A
N
VAL
161
1
5.82
0.90
118.30
124.12
A
A
A
CB
CG
OD2
ASP
ASP
ASP
15
15
15
N
1
-10.16
0.90
118.30
108.14
A
A
A
CB
CG
OD1
ASP
ASP
ASP
35
35
35
N
1
15.71
0.90
118.30
134.01
A
A
A
CB
CG
OD2
ASP
ASP
ASP
35
35
35
N
1
31.23
1.40
123.60
154.83
A
A
A
CD
NE
CZ
ARG
ARG
ARG
121
121
121
N
1
4.01
0.50
120.30
124.31
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
121
121
121
N
1
18.79
1.40
123.60
142.39
A
A
A
CD
NE
CZ
ARG
ARG
ARG
133
133
133
N
1
6.64
0.50
120.30
126.94
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
133
133
133
N
1
A
A
NH2
NH2
ARG
ARG
121
121
1.74
1_555
12_556
1
A
A
OD1
NH1
ASP
ARG
35
121
1.91
1_555
5_556
1
A
A
O
O
HOH
HOH
235
261
1.94
1_555
2_555
1
A
A
O
O
GLY
HOH
71
234
2.02
1_555
5_556
1
A
A
NE
O
ARG
HOH
121
386
2.04
1_555
9_555
1
A
A
O
O
HOH
HOH
234
417
2.16
1_555
5_556
1
A
CYS
10
-157.89
72.50
1
A
THR
69
72.48
-7.28
1
A
ARG
133
-39.36
121.36
1
A
ASN
154
-101.48
41.78
1
A
SER
170
-66.07
-178.95
0.233
0.196
0.194
1.6
12.4
1199
24846
23707
5
95.4
Random
1
0.0
1.0
MIR
Engh & Huber
1.6
12.4
253
1745
1
0
1491
0.006
0.024
17
1.6
12.0
1FI2
24846
23707
1.0
1.0
0.07
1
24.4
14
95.4
0.083
1.60
1.66
2084
1
5
85.3
data reduction
DENZO
data scaling
SCALEPACK
phasing
MLPHARE
refinement
REFMAC
GERMIN (OXALATE OXIDASE) (E.C.1.2.3.4)
CRYSTAL STRUCTURE OF GERMIN (OXALATE OXIDASE)
1
N
N
2
N
N
3
N
N
A
PRO
28
A
PRO
28
HELX_P
A
ALA
32
A
ALA
32
5
1
5
A
TRP
64
A
TRP
64
HELX_P
A
ASN
68
A
ASN
68
5
2
5
A
SER
111
A
SER
111
HELX_P
A
GLY
115
A
GLY
115
5
3
5
A
VAL
163
A
VAL
163
HELX_P
A
SER
170
A
SER
170
1
4
8
A
PRO
175
A
PRO
175
HELX_P
A
ARG
184
A
ARG
184
1
5
10
A
GLU
186
A
GLU
186
HELX_P
A
PHE
197
A
PHE
197
1
6
12
disulf
2.018
A
CYS
10
A
SG
CYS
10
1_555
A
CYS
26
A
SG
CYS
26
1_555
metalc
2.298
A
MN
202
B
MN
MN
1_555
A
HIS
90
A
NE2
HIS
90
1_555
metalc
2.183
A
MN
202
B
MN
MN
1_555
A
GLU
95
A
OE1
GLU
95
1_555
metalc
2.233
A
MN
202
B
MN
MN
1_555
A
HIS
137
A
NE2
HIS
137
1_555
metalc
2.435
A
MN
202
B
MN
MN
1_555
A
HOH
213
C
O
HOH
1_555
metalc
2.272
A
MN
202
B
MN
MN
1_555
A
HIS
88
A
NE2
HIS
88
1_555
metalc
2.233
A
MN
202
B
MN
MN
1_555
A
HOH
223
C
O
HOH
1_555
OXIDOREDUCTASE
beta-jellyroll, OXIDOREDUCTASE
A
ASP
171
A
ASP
171
1
A
PRO
172
A
PRO
172
-2.61
OXO1_HORVU
UNP
1
1
P45850
SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFA
PGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI
VFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFAGGS
1
201
1FI2
1
201
P45850
A
1
1
201
1
SER
SEE REMARK 999
THR
1
1FI2
A
P45850
UNP
1
1
5
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
54
A
SER
54
A
LEU
59
A
LEU
59
A
SER
73
A
SER
73
A
PHE
79
A
PHE
79
A
ALA
147
A
ALA
147
A
PHE
153
A
PHE
153
A
GLU
95
A
GLU
95
A
LYS
101
A
LYS
101
A
THR
128
A
THR
128
A
ILE
131
A
ILE
131
A
LEU
118
A
LEU
118
A
ARG
124
A
ARG
124
A
GLU
103
A
GLU
103
A
LEU
109
A
LEU
109
A
HIS
137
A
HIS
137
A
ASN
141
A
ASN
141
A
THR
84
A
THR
84
A
ILE
89
A
ILE
89
A
VAL
161
A
VAL
161
A
PHE
162
A
PHE
162
BINDING SITE FOR RESIDUE MN A 202
Software
6
A
HIS
88
A
HIS
88
6
1_555
A
HIS
90
A
HIS
90
6
1_555
A
GLU
95
A
GLU
95
6
1_555
A
HIS
137
A
HIS
137
6
1_555
A
HOH
213
C
HOH
6
1_555
A
HOH
223
C
HOH
6
1_555
155
H 3 2