0.016181
0.009342
0.000000
0.000000
0.018684
0.000000
0.000000
0.000000
0.018727
0.00000
0.00000
0.00000
Suzuki, M.
Sugimoto, H.
Nakagawa, A.
Tanaka, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
61.800
61.800
53.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
3
259
266
10.1038/nsb0396-259
8605628
Crystal structure of the macrophage migration inhibitory factor from rat liver.
1996
US
J.Struct.Biol.
JSBIEM
0803
1047-8477
115
331
Crystallization of Rat Liver Macrophage Migration Inhibitory Factor for MAD Analysis
1995
10.2210/pdb1fim/pdb
pdb_00001fim
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
283
1
1995-05-18
x-ray
1
1.0
SELENOMETHIONYL PROTEIN (MET 47)
12282.658
MACROPHAGE MIGRATION INHIBITORY FACTOR
M2A, M101A
1
man
polymer
no
yes
PAFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQL(MSE)TFSGTSDPCALCSLHSIGKIGGAQNRNYS
KLLCGLLSDRLHISPDRVYINYYDANAANVGWNGSTFA
PAFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTSDPCALCSLHSIGKIGGAQNRNYSKLLC
GLLSDRLHISPDRVYINYYDANAANVGWNGSTFA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
sample
METHIONINE AUXOTROPIC ESCHERICHIA COLI STRAINS HARVESTED IN A MEDIUM CONTAINING SELENOMETHIONINE
10116
LIVER
Rattus norvegicus
562
Escherichia coli
PET3
1
2.40
48.65
6.5
pH 6.5
pdbx_database_status
struct_conf
struct_conf_type
database_2
struct_conn
struct_ref_seq_dif
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Database references
Derived calculations
Database references
1
0
1996-07-11
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
1
4
2021-11-03
1
5
2022-12-21
_pdbx_database_status.process_site
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_ref_seq_dif.details
Y
BNL
1996-01-31
REL
PRO
1
n
1
PRO
1
A
ALA
2
n
2
ALA
2
A
PHE
3
n
3
PHE
3
A
ILE
4
n
4
ILE
4
A
VAL
5
n
5
VAL
5
A
ASN
6
n
6
ASN
6
A
THR
7
n
7
THR
7
A
ASN
8
n
8
ASN
8
A
VAL
9
n
9
VAL
9
A
PRO
10
n
10
PRO
10
A
ARG
11
n
11
ARG
11
A
ALA
12
n
12
ALA
12
A
SER
13
n
13
SER
13
A
VAL
14
n
14
VAL
14
A
PRO
15
n
15
PRO
15
A
GLU
16
n
16
GLU
16
A
GLY
17
n
17
GLY
17
A
PHE
18
n
18
PHE
18
A
LEU
19
n
19
LEU
19
A
SER
20
n
20
SER
20
A
GLU
21
n
21
GLU
21
A
LEU
22
n
22
LEU
22
A
THR
23
n
23
THR
23
A
GLN
24
n
24
GLN
24
A
GLN
25
n
25
GLN
25
A
LEU
26
n
26
LEU
26
A
ALA
27
n
27
ALA
27
A
GLN
28
n
28
GLN
28
A
ALA
29
n
29
ALA
29
A
THR
30
n
30
THR
30
A
GLY
31
n
31
GLY
31
A
LYS
32
n
32
LYS
32
A
PRO
33
n
33
PRO
33
A
ALA
34
n
34
ALA
34
A
GLN
35
n
35
GLN
35
A
TYR
36
n
36
TYR
36
A
ILE
37
n
37
ILE
37
A
ALA
38
n
38
ALA
38
A
VAL
39
n
39
VAL
39
A
HIS
40
n
40
HIS
40
A
VAL
41
n
41
VAL
41
A
VAL
42
n
42
VAL
42
A
PRO
43
n
43
PRO
43
A
ASP
44
n
44
ASP
44
A
GLN
45
n
45
GLN
45
A
LEU
46
n
46
LEU
46
A
MSE
47
n
47
MSE
47
A
THR
48
n
48
THR
48
A
PHE
49
n
49
PHE
49
A
SER
50
n
50
SER
50
A
GLY
51
n
51
GLY
51
A
THR
52
n
52
THR
52
A
SER
53
n
53
SER
53
A
ASP
54
n
54
ASP
54
A
PRO
55
n
55
PRO
55
A
CYS
56
n
56
CYS
56
A
ALA
57
n
57
ALA
57
A
LEU
58
n
58
LEU
58
A
CYS
59
n
59
CYS
59
A
SER
60
n
60
SER
60
A
LEU
61
n
61
LEU
61
A
HIS
62
n
62
HIS
62
A
SER
63
n
63
SER
63
A
ILE
64
n
64
ILE
64
A
GLY
65
n
65
GLY
65
A
LYS
66
n
66
LYS
66
A
ILE
67
n
67
ILE
67
A
GLY
68
n
68
GLY
68
A
GLY
69
n
69
GLY
69
A
ALA
70
n
70
ALA
70
A
GLN
71
n
71
GLN
71
A
ASN
72
n
72
ASN
72
A
ARG
73
n
73
ARG
73
A
ASN
74
n
74
ASN
74
A
TYR
75
n
75
TYR
75
A
SER
76
n
76
SER
76
A
LYS
77
n
77
LYS
77
A
LEU
78
n
78
LEU
78
A
LEU
79
n
79
LEU
79
A
CYS
80
n
80
CYS
80
A
GLY
81
n
81
GLY
81
A
LEU
82
n
82
LEU
82
A
LEU
83
n
83
LEU
83
A
SER
84
n
84
SER
84
A
ASP
85
n
85
ASP
85
A
ARG
86
n
86
ARG
86
A
LEU
87
n
87
LEU
87
A
HIS
88
n
88
HIS
88
A
ILE
89
n
89
ILE
89
A
SER
90
n
90
SER
90
A
PRO
91
n
91
PRO
91
A
ASP
92
n
92
ASP
92
A
ARG
93
n
93
ARG
93
A
VAL
94
n
94
VAL
94
A
TYR
95
n
95
TYR
95
A
ILE
96
n
96
ILE
96
A
ASN
97
n
97
ASN
97
A
TYR
98
n
98
TYR
98
A
TYR
99
n
99
TYR
99
A
ASP
100
n
100
ASP
100
A
ALA
101
n
101
ALA
101
A
ASN
102
n
102
ASN
102
A
ALA
103
n
103
ALA
103
A
n
104
104
A
n
105
105
A
n
106
106
A
n
107
107
A
n
108
108
A
n
109
109
A
n
110
110
A
n
111
111
A
n
112
112
A
n
113
113
A
n
114
114
A
author_defined_assembly
3
trimeric
A
MSE
47
SELENOMETHIONINE
A
MSE
47
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
30.9000000000
53.5203699539
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
61.8000000000
0.0000000000
0.0000000000
1
A
ALA
104
A
ALA
104
1
Y
1
A
ASN
105
A
ASN
105
1
Y
1
A
VAL
106
A
VAL
106
1
Y
1
A
GLY
107
A
GLY
107
1
Y
1
A
TRP
108
A
TRP
108
1
Y
1
A
ASN
109
A
ASN
109
1
Y
1
A
GLY
110
A
GLY
110
1
Y
1
A
SER
111
A
SER
111
1
Y
1
A
THR
112
A
THR
112
1
Y
1
A
PHE
113
A
PHE
113
1
Y
1
A
ALA
114
A
ALA
114
1
Y
1
-3.22
0.50
120.30
117.08
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
93
93
93
N
1
A
ALA
101
-38.93
-19.28
30.7
0.2440000
0.1970000
0.1970000
2.2
5.0
5143
3.59
94.6
1
0.
0.28
2.2
5.0
0
782
0
0
782
0.015
1.718
25.88
1.602
2.2
40.0
1FIM
5697
0.
1
94.5
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
MACROPHAGE MIGRATION INHIBITORY FACTOR
1
N
N
A
GLY
17
A
GLY
17
HELX_P
A
GLY
31
A
GLY
31
1
H1
15
A
GLY
68
A
GLY
68
HELX_P
A
HIS
88
A
HIS
88
1
H2
21
A
PRO
10
A
PRO
10
HELX_P
A
VAL
14
A
VAL
14
5
H3
5
A
PRO
33
A
PRO
33
HELX_P
A
ILE
37
A
ILE
37
5
H4
5
covale
1.325
both
A
LEU
46
A
C
LEU
46
1_555
A
MSE
47
A
N
MSE
47
1_555
covale
1.337
both
A
MSE
47
A
C
MSE
47
1_555
A
THR
48
A
N
THR
48
1_555
CYTOKINE
MACROPHAGE, INFLAMMATORY RESPONSE, CYTOKINE
MIF_RAT
UNP
1
1
P30904
PMFIVNTNVPRASVPEGFLSELTQQLAQATGKPAQYIAVHVVPDQLMTFSGTSDPCALCSLHSIGKIGGAQNRNYSKLLC
GLLSDRLHISPDRVYINYYDMNAANVGWNGSTFA
1
114
1FIM
1
114
P30904
A
1
1
114
1
MET
engineered mutation
ALA
2
1FIM
A
P30904
UNP
2
2
1
MET
engineered mutation
MSE
47
1FIM
A
P30904
UNP
47
47
1
MET
engineered mutation
ALA
101
1FIM
A
P30904
UNP
101
101
4
parallel
anti-parallel
parallel
A
ALA
38
A
ALA
38
A
VAL
42
A
VAL
42
A
PRO
1
A
PRO
1
A
THR
7
A
THR
7
A
CYS
56
A
CYS
56
A
SER
63
A
SER
63
A
ARG
93
A
ARG
93
A
ALA
101
A
ALA
101
173
P 63