0.009929 0.005732 0.000000 0.000000 0.011464 0.000000 0.000000 0.000000 0.012105 0.00000 0.00000 0.00000 Benas, P. Dumas, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 100.72 100.72 82.61 C16 H23 N6 O11 P S 538.426 n 2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE-5'-MONOPHOSPHATE RNA linking C11 H16 N5 O7 P 361.248 n 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE RNA linking C11 H16 N5 O8 P 377.247 n 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE RNA linking C11 H17 N2 O9 P 352.234 n 2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE RNA linking C10 H16 N3 O8 P 337.223 n 5-METHYLCYTIDINE-5'-MONOPHOSPHATE RNA linking C12 H17 N2 O10 P S 412.310 n 5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'-MONOPHOSPHATE RNA linking C11 H18 N5 O8 P 379.263 n 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H15 N2 O9 P 326.197 n 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H13 N2 O9 P 324.181 n PSEUDOURIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking UK RNA RNARFU 2122 1355-8382 6 1347 1355 10.1017/S1355838200000911 11073212 The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop. 2000 To be Published 0353 Molecular blocs in tRNAs that could prevent +1 frameshifting 2000 Thesis 1 313 Studies on the ternary initiation complex of HIV-1 reverse transcription and crystallographic structures of two partners 2000 10.2210/pdb1fir/pdb pdb_00001fir 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 CCD 1998-02-02 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.9805 1.0 BM02 ESRF 0.9805 SYNCHROTRON ESRF BEAMLINE BM02 24847.088 HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) 1 nat polymer 24.305 MAGNESIUM ION 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 16 nat water no yes GCCCG(2MG)AUA(2MG)CUCAG(H2U)CGG(H2U)AGAGCA(PSU)CAGACU(70U)UU(12A)A(PSU)CUGAGG (7MG)(H2U)(5MC)(5MC)AGGG(2MU)(PSU)CA(1MA)GUCCCUGUUCGGGCGCCA GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle THIS SEQUENCE OCCURS NATURALLY IN HUMANS, BOVINES AND CHICKENS Bos sample 9913 Bos taurus 1 5.12 78.73 VAPOR DIFFUSION, HANGING DROP 5.6 50 mM MES-KOH pH 5.6, 1.6 to 1.8 M Li2SO4, 10 mM MgCl2, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 Li2SO4 1 MgCl2 1 MES-KOH 1 Li2SO4 2 MgCl2 2 MES-KOH 2 3.841 1 19 A 1 A 72 4.417 A_G1:C72_A 1 -1.781 -0.243 0.210 -0.280 5.120 1 19 A 2 A 71 3.212 A_C2:G71_A 2 -8.160 0.238 -0.452 -0.182 2.675 1 19 A 3 A 70 3.900 A_C3:G70_A 3 -7.934 0.338 -0.212 -0.236 10.210 1 19 A 4 A 69 -1.297 A_C4:G69_A 4 -7.274 0.266 -0.075 -0.150 8.525 1 19 A 5 A 68 -0.411 A_G5:C68_A 5 -2.386 -0.065 0.759 -0.118 2.496 1 28 A 6 A 67 6.154 A_2MG6:U67_A 6 1.954 -2.018 0.234 -0.272 -6.536 1 20 A 7 A 66 3.730 A_A7:U66_A 7 12.708 -0.062 -0.439 -0.038 -18.204 1 19 A 49 A 65 2.082 A_5MC49:G65_A 8 9.312 -0.005 0.949 -0.165 -0.463 1 20 A 50 A 64 7.791 A_A50:U64_A 9 2.493 0.001 -0.615 -0.190 -7.667 1 19 A 51 A 63 -1.821 A_G51:C63_A 10 -2.276 0.093 -1.227 -0.363 -19.480 1 19 A 52 A 62 3.679 A_G52:C62_A 11 -7.346 -0.012 -0.531 -0.015 -23.600 1 19 A 53 A 61 1.641 A_G53:C61_A 12 -9.300 -0.291 -0.576 -0.012 -3.881 4 24 A 54 A 58 -104.032 A_2MU54:1MA58_A 13 3.721 4.646 0.366 -2.355 20.730 2 A 55 A 18 -100.558 A_PSU55:G18_A 14 21.614 0.392 0.345 -5.318 23.453 1 A 38 A 32 -35.547 A_A38:C32_A 15 7.908 -3.743 1.873 -1.229 21.782 1 21 A 39 A 31 -5.313 A_PSU39:A31_A 16 -16.655 -0.369 -0.193 -0.077 8.637 1 19 A 40 A 30 1.608 A_C40:G30_A 17 -9.933 0.195 0.029 -0.091 1.048 1 20 A 41 A 29 9.797 A_U41:A29_A 18 2.321 0.205 0.037 -0.309 4.233 1 19 A 42 A 28 -1.741 A_G42:C28_A 19 -3.656 -0.271 1.227 -0.597 -7.915 1 21 A 43 A 27 -10.890 A_A43:PSU27_A 20 -8.028 0.139 1.076 -0.174 -24.905 8 A 44 A 26 -33.470 A_G44:A26_A 21 -14.294 0.032 0.446 1.770 5.624 1 19 A 10 A 25 4.141 A_2MG10:C25_A 22 -6.816 -0.291 -0.368 -0.256 -10.757 1 19 A 11 A 24 -2.697 A_C11:G24_A 23 -7.794 0.084 -0.270 -0.252 -18.503 1 20 A 12 A 23 -2.429 A_U12:A23_A 24 -4.956 0.009 0.438 -0.038 6.631 1 19 A 13 A 22 2.590 A_C13:G22_A 25 -5.813 0.116 -0.322 -0.131 9.735 5 A 14 A 21 57.790 A_A14:A21_A 26 -3.042 -6.318 -0.290 -0.416 12.048 2 22 A 15 A 48 152.650 A_G15:5MC48_A 27 5.652 -0.038 0.217 4.107 -22.837 1 19 A 19 A 56 1.037 A_G19:C56_A 28 -9.467 0.533 -0.374 -0.279 2.682 26.854 A A 1 2 11.805 A A 72 71 3.251 5.409 -0.416 -1.802 AA_G1C2:G71C72_AA 1 5.415 -11.817 25.759 -5.171 2.188 2.464 34.822 A A 2 3 18.593 A A 71 70 3.197 10.946 0.084 -1.880 AA_C2C3:G70G71_AA 2 -1.418 2.409 33.078 -4.622 -0.333 2.807 33.715 A A 3 4 11.338 A A 70 69 3.154 6.536 -0.195 -1.523 AA_C3C4:G69G70_AA 3 0.492 -0.854 33.090 -3.603 0.409 1.788 33.341 A A 4 5 24.924 A A 69 68 2.851 13.794 -0.270 -2.013 AA_C4G5:C68G69_AA 4 -6.558 11.850 29.726 -5.234 -0.351 2.467 29.861 A A 5 6 11.800 A A 68 67 2.995 6.038 0.605 -2.204 AA_G52MG6:U67C68_AA 5 -1.453 2.839 29.222 -5.336 -1.428 2.487 38.200 A A 6 7 17.088 A A 67 66 3.198 11.006 -0.422 -1.821 AA_2MG6A7:U66U67_AA 6 4.878 -7.574 36.320 -4.021 1.194 3.930 36.401 A A 7 49 -5.919 A A 66 65 3.674 -3.672 -0.646 -2.231 AA_A75MC49:G65U66_AA 7 -6.718 10.829 35.614 -2.971 -0.064 2.715 31.642 A A 49 50 -3.697 A A 65 64 2.736 -1.969 0.082 -2.313 AA_5MC49A50:U64G65_AA 8 11.748 -22.062 29.368 -3.927 1.731 2.462 38.416 A A 50 51 25.098 A A 64 63 3.273 16.041 -0.745 -1.253 AA_A50G51:C63U64_AA 9 1.217 -1.904 35.002 -3.746 1.272 2.947 28.569 A A 51 52 16.400 A A 63 62 3.610 7.944 0.518 -1.360 AA_G51G52:C62C63_AA 10 -5.233 10.803 26.970 -4.621 -2.278 3.265 34.236 A A 52 53 9.095 A A 62 61 3.595 5.328 0.652 -2.186 AA_G52G53:C61C62_AA 11 2.913 -4.972 33.710 -4.600 -0.623 3.008 93.310 A A 53 54 -1.633 A A 61 58 2.892 -2.374 -1.997 -2.051 AA_G532MU54:1MA58C61_AA 12 -4.797 3.299 93.192 -1.370 1.293 4.158 37.394 A A 54 55 1.393 A A 58 18 3.625 0.864 2.175 -2.112 AA_2MU54PSU55:G181MA58_AA 13 16.435 -26.483 33.694 -3.438 -0.672 3.744 41.031 A A 38 39 9.128 A A 32 31 3.912 6.362 1.665 -1.878 AA_A38PSU39:A31C32_AA 14 4.529 -6.498 40.313 -3.498 -1.793 3.401 44.792 A A 39 40 8.420 A A 31 30 3.655 6.396 0.393 -1.586 AA_PSU39C40:G30A31_AA 15 -0.564 0.743 44.353 -2.712 -0.572 2.808 28.693 A A 40 41 13.319 A A 30 29 3.262 6.543 0.498 -1.742 AA_C40U41:A29G30_AA 16 1.218 -2.480 27.926 -4.903 -0.746 1.893 31.604 A A 41 42 17.516 A A 29 28 2.585 9.354 -0.055 -1.902 AA_U41G42:C28A29_AA 17 -5.585 10.458 29.712 -4.718 -0.631 3.348 38.905 A A 42 43 -1.338 A A 28 27 3.336 -0.889 -0.059 -2.118 AA_G42A43:PSU27C28_AA 18 5.029 -7.571 38.581 -3.069 0.715 2.393 31.542 A A 43 44 16.371 A A 27 26 3.334 8.740 -1.260 -1.998 AA_A43G44:A26PSU27_AA 19 5.673 -10.626 29.813 -5.141 3.269 1.887 68.059 A A 44 10 1.768 A A 26 25 2.757 1.955 -2.604 -3.575 AA_G442MG10:C25A26_AA 20 20.055 -18.130 65.353 -3.248 2.879 2.634 35.301 A A 10 11 23.790 A A 25 24 3.523 14.042 -0.812 -1.696 AA_2MG10C11:G24C25_AA 21 -2.186 3.703 32.398 -4.844 1.020 3.489 39.058 A A 11 12 7.769 A A 24 23 3.655 5.178 -0.043 -1.053 AA_C11U12:A23G24_AA 22 -1.963 2.946 38.679 -2.259 -0.195 2.739 29.938 A A 12 13 -0.100 A A 23 22 2.500 -0.051 1.308 -1.712 AA_U12C13:G22A23_AA 23 7.139 -13.947 29.093 -3.306 -1.332 5.363 -14.477 A A 13 14 -38.870 A A 22 21 3.171 8.125 2.863 -3.359 AA_C13A14:A21G22_AA 24 -9.509 -45.490 -7.304 0.719 -3.395 1.930 12.660 A A 14 15 -23.512 A A 21 48 3.583 -4.405 0.336 -0.481 AA_A14G15:5MC48A21_AA 25 -9.513 50.775 7.107 3.379 -13.533 diffrn_source diffrn_source database_2 pdbx_initial_refinement_model struct_conn struct_site repository Initial release Version format compliance Non-polymer description Version format compliance Derived calculations Data collection Data collection Database references Derived calculations Refinement description 1 0 2001-01-17 1 1 2008-04-27 1 2 2011-07-13 1 3 2014-04-09 1 4 2018-04-04 1 5 2018-04-11 1 6 2023-08-02 _diffrn_source.type _diffrn_source.pdbx_synchrotron_beamline _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NDB Y NDB 2000-08-06 REL REL MG MAGNESIUM ION NA SODIUM ION HOH water 4TNA PDB experimental model MG 201 2 MG MG 201 A NA 202 3 NA NA 202 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A G 1 n 1 G 1 A C 2 n 2 C 2 A C 3 n 3 C 3 A C 4 n 4 C 4 A G 5 n 5 G 5 A 2MG 6 n 6 2MG 6 A A 7 n 7 A 7 A U 8 n 8 U 8 A A 9 n 9 A 9 A 2MG 10 n 10 2MG 10 A C 11 n 11 C 11 A U 12 n 12 U 12 A C 13 n 13 C 13 A A 14 n 14 A 14 A G 15 n 15 G 15 A DHU 16 n 16 H2U 16 A C 17 n 17 C 17 A G 18 n 18 G 18 A G 19 n 19 G 19 A DHU 20 n 20 H2U 20 A A 21 n 21 A 21 A G 22 n 22 G 22 A A 23 n 23 A 23 A G 24 n 24 G 24 A C 25 n 25 C 25 A A 26 n 26 A 26 A PSU 27 n 27 PSU 27 A C 28 n 28 C 28 A A 29 n 29 A 29 A G 30 n 30 G 30 A A 31 n 31 A 31 A C 32 n 32 C 32 A U 33 n 33 U 33 A 70U 34 n 34 70U 34 A U 35 n 35 U 35 A U 36 n 36 U 36 A 12A 37 n 37 12A 37 A A 38 n 38 A 38 A PSU 39 n 39 PSU 39 A C 40 n 40 C 40 A U 41 n 41 U 41 A G 42 n 42 G 42 A A 43 n 43 A 43 A G 44 n 44 G 44 A G 45 n 45 G 45 A 7MG 46 n 46 7MG 46 A DHU 47 n 47 H2U 47 A 5MC 48 n 48 5MC 48 A 5MC 49 n 49 5MC 49 A A 50 n 50 A 50 A G 51 n 51 G 51 A G 52 n 52 G 52 A G 53 n 53 G 53 A 2MU 54 n 54 2MU 54 A PSU 55 n 55 PSU 55 A C 56 n 56 C 56 A A 57 n 57 A 57 A 1MA 58 n 58 1MA 58 A G 59 n 59 G 59 A U 60 n 60 U 60 A C 61 n 61 C 61 A C 62 n 62 C 62 A C 63 n 63 C 63 A U 64 n 64 U 64 A G 65 n 65 G 65 A U 66 n 66 U 66 A U 67 n 67 U 67 A C 68 n 68 C 68 A G 69 n 69 G 69 A G 70 n 70 G 70 A G 71 n 71 G 71 A C 72 n 72 C 72 A G 73 n 73 G 73 A C 74 n 74 C 74 A C 75 n 75 C 75 A A 76 n 76 A 76 A author_defined_assembly 1 monomeric A 2MG 6 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE A 2MG 6 G A 2MG 10 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE A 2MG 10 G A H2U 16 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE A H2U 16 U A H2U 20 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE A H2U 20 U A PSU 27 PSEUDOURIDINE-5'-MONOPHOSPHATE A PSU 27 U A 70U 34 A 70U 34 U A 12A 37 A 12A 37 A A PSU 39 PSEUDOURIDINE-5'-MONOPHOSPHATE A PSU 39 U A 7MG 46 A 7MG 46 G A H2U 47 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE A H2U 47 U A 5MC 48 5-METHYLCYTIDINE-5'-MONOPHOSPHATE A 5MC 48 C A 5MC 49 5-METHYLCYTIDINE-5'-MONOPHOSPHATE A 5MC 49 C A 2MU 54 2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE A 2MU 54 U A PSU 55 PSEUDOURIDINE-5'-MONOPHOSPHATE A PSU 55 U A 1MA 58 A 1MA 58 A 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A C3' U 60 PLANAR 1 A A O4' O2' U 5MC 8 48 2.17 1 A G 5 0.052 SIDE CHAIN 1 A G 42 0.054 SIDE CHAIN 1 8.10 1.30 114.00 122.10 A A A N9 C1' C2' A A A 9 9 9 N 1 9.59 1.30 114.00 123.59 A A A N1 C1' C2' C C C 17 17 17 N 1 5.04 0.70 108.50 113.54 A A A O4' C1' N9 G G G 19 19 19 B B B N 1 17.69 1.60 113.70 131.39 A A A C2' C3' O3' U U U 60 60 60 N 1 A A P OP3 G G 1 1 -0.081 0.012 1.607 1.526 N DNA-RNA-REP-RESIPARAM.BP DNA-RNA-RESITOP.BP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 33.2 4.53 7.03 0.00 4.53 0.00 -9.07 R and free R improved by 12% and 11% respectively by a proper mask definition (see primary ref.) 0.2270000 0.010 0.1810000 0.1810000 3.30 40.00 543 6481 5890 9.2 80.5 RANDOM 836049.77 0.00 1 RESTRAINED THROUGHOUT 3.0 MOLECULAR REPLACEMENT 4TNA modified CNS libraries (Parkinson et al.) FLAT MODEL 34.19 0.03 0.41 0.31 5.00 0.21 0.21 3.30 40.00 16 1663 2 1645 0 0.009 1.5 19.2 2.06 0.2340000 0.040 0.2210000 3.51 34 666 6 4.9 58.1 3.30 40.0 1FIR 6482 6482 0.0 0.0 0.0810000 1 10.5 3.2 88.2 3.30 3.42 4.3 503 0.1650000 1 2.2 71.6 phasing AMoRE refinement CNS 0.4 data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) 1 N N 2 N N 3 N N 4 N N covale 1.615 both A G 5 A O3' G 5 1_555 A 2MG 6 A P 2MG 6 1_555 covale 1.596 both A 2MG 6 A O3' 2MG 6 1_555 A A 7 A P A 7 1_555 covale 1.587 both A A 9 A O3' A 9 1_555 A 2MG 10 A P 2MG 10 1_555 covale 1.598 both A 2MG 10 A O3' 2MG 10 1_555 A C 11 A P C 11 1_555 covale 1.603 both A G 15 A O3' G 15 1_555 A H2U 16 A P H2U 16 1_555 covale 1.607 both A H2U 16 A O3' H2U 16 1_555 A C 17 A P C 17 1_555 covale 1.591 both A A A G 19 A O3' G 19 1_555 A H2U 20 A P H2U 20 1_555 covale 1.588 both B B A G 19 A O3' G 19 1_555 A H2U 20 A P H2U 20 1_555 covale 1.609 both A A H2U 20 A O3' H2U 20 1_555 A A 21 A P A 21 1_555 covale 1.624 both B A H2U 20 A O3' H2U 20 1_555 A A 21 A P A 21 1_555 covale 1.604 both A A 26 A O3' A 26 1_555 A PSU 27 A P PSU 27 1_555 covale 1.606 both A PSU 27 A O3' PSU 27 1_555 A C 28 A P C 28 1_555 covale 1.604 both A U 33 A O3' U 33 1_555 A 70U 34 A P 70U 34 1_555 covale 1.602 both A 70U 34 A O3' 70U 34 1_555 A U 35 A P U 35 1_555 covale 1.595 both A U 36 A O3' U 36 1_555 A 12A 37 A P 12A 37 1_555 covale 1.604 both A 12A 37 A O3' 12A 37 1_555 A A 38 A P A 38 1_555 covale 1.600 both A A 38 A O3' A 38 1_555 A PSU 39 A P PSU 39 1_555 covale 1.610 both A PSU 39 A O3' PSU 39 1_555 A C 40 A P C 40 1_555 covale 1.604 both A G 45 A O3' G 45 1_555 A 7MG 46 A P 7MG 46 1_555 covale 1.587 both A 7MG 46 A O3' 7MG 46 1_555 A H2U 47 A P H2U 47 1_555 covale 1.591 both A H2U 47 A O3' H2U 47 1_555 A 5MC 48 A P 5MC 48 1_555 covale 1.598 both A 5MC 48 A O3' 5MC 48 1_555 A 5MC 49 A P 5MC 49 1_555 covale 1.584 both A 5MC 49 A O3' 5MC 49 1_555 A A 50 A P A 50 1_555 covale 1.596 both A G 53 A O3' G 53 1_555 A 2MU 54 A P 2MU 54 1_555 covale 1.586 both A 2MU 54 A O3' 2MU 54 1_555 A PSU 55 A P PSU 55 1_555 covale 1.603 both A PSU 55 A O3' PSU 55 1_555 A C 56 A P C 56 1_555 covale 1.610 both A A 57 A O3' A 57 1_555 A 1MA 58 A P 1MA 58 1_555 covale 1.593 both A 1MA 58 A O3' 1MA 58 1_555 A G 59 A P G 59 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 72 A N3 C 72 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 72 A O2 C 72 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 72 A N4 C 72 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 A G 71 A N1 G 71 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 A G 71 A O6 G 71 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 A G 71 A N2 G 71 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 70 A N1 G 70 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 70 A O6 G 70 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 70 A N2 G 70 1_555 hydrog WATSON-CRICK A C 4 A N3 C 4 1_555 A G 69 A N1 G 69 1_555 hydrog WATSON-CRICK A C 4 A N4 C 4 1_555 A G 69 A O6 G 69 1_555 hydrog WATSON-CRICK A C 4 A O2 C 4 1_555 A G 69 A N2 G 69 1_555 hydrog WATSON-CRICK A G 5 A N1 G 5 1_555 A C 68 A N3 C 68 1_555 hydrog WATSON-CRICK A G 5 A N2 G 5 1_555 A C 68 A O2 C 68 1_555 hydrog WATSON-CRICK A G 5 A O6 G 5 1_555 A C 68 A N4 C 68 1_555 hydrog TYPE_28_PAIR A 2MG 6 A N1 2MG 6 1_555 A U 67 A O2 U 67 1_555 hydrog TYPE_28_PAIR A 2MG 6 A O6 2MG 6 1_555 A U 67 A N3 U 67 1_555 hydrog WATSON-CRICK A A 7 A N1 A 7 1_555 A U 66 A N3 U 66 1_555 hydrog WATSON-CRICK A A 7 A N6 A 7 1_555 A U 66 A O4 U 66 1_555 hydrog REVERSED HOOGSTEEN A U 8 A N3 U 8 1_555 A A 14 A N7 A 14 1_555 hydrog REVERSED HOOGSTEEN A U 8 A O2 U 8 1_555 A A 14 A N6 A 14 1_555 hydrog TYPE_2_PAIR A A 9 A N6 A 9 1_555 A A 23 A N7 A 23 1_555 hydrog TYPE_2_PAIR A A 9 A N7 A 9 1_555 A A 23 A N6 A 23 1_555 hydrog WATSON-CRICK A 2MG 10 A N1 2MG 10 1_555 A C 25 A N3 C 25 1_555 hydrog WATSON-CRICK A 2MG 10 A N2 2MG 10 1_555 A C 25 A O2 C 25 1_555 hydrog WATSON-CRICK A 2MG 10 A O6 2MG 10 1_555 A C 25 A N4 C 25 1_555 hydrog 2MG-G MISPAIR A 2MG 10 A O6 2MG 10 1_555 A G 45 A N2 G 45 1_555 hydrog WATSON-CRICK A C 11 A N3 C 11 1_555 A G 24 A N1 G 24 1_555 hydrog WATSON-CRICK A C 11 A N4 C 11 1_555 A G 24 A O6 G 24 1_555 hydrog WATSON-CRICK A C 11 A O2 C 11 1_555 A G 24 A N2 G 24 1_555 hydrog WATSON-CRICK A U 12 A N3 U 12 1_555 A A 23 A N1 A 23 1_555 hydrog WATSON-CRICK A U 12 A O4 U 12 1_555 A A 23 A N6 A 23 1_555 hydrog WATSON-CRICK A C 13 A N3 C 13 1_555 A G 22 A N1 G 22 1_555 hydrog WATSON-CRICK A C 13 A N4 C 13 1_555 A G 22 A O6 G 22 1_555 hydrog WATSON-CRICK A C 13 A O2 C 13 1_555 A G 22 A N2 G 22 1_555 hydrog A-A MISPAIR A A 14 A N6 A 14 1_555 A A 21 A N3 A 21 1_555 hydrog REVERSED WATSON-CRICK A G 15 A N1 G 15 1_555 A 5MC 48 A O2 5MC 48 1_555 hydrog REVERSED WATSON-CRICK A G 15 A N2 G 15 1_555 A 5MC 48 A N3 5MC 48 1_555 hydrog G-PSU MISPAIR A G 18 A N1 G 18 1_555 A PSU 55 A O4 PSU 55 1_555 hydrog WATSON-CRICK A A G 19 A N1 G 19 1_555 A C 56 A N3 C 56 1_555 hydrog WATSON-CRICK A A G 19 A N2 G 19 1_555 A C 56 A O2 C 56 1_555 hydrog WATSON-CRICK A A G 19 A O6 G 19 1_555 A C 56 A N4 C 56 1_555 hydrog TYPE_7_PAIR A G 22 A N7 G 22 1_555 A 7MG 46 A N1 7MG 46 1_555 hydrog TYPE_7_PAIR A G 22 A O6 G 22 1_555 A 7MG 46 A N2 7MG 46 1_555 hydrog TYPE_8_PAIR A A 26 A N1 A 26 1_555 A G 44 A N1 G 44 1_555 hydrog TYPE_8_PAIR A A 26 A N6 A 26 1_555 A G 44 A O6 G 44 1_555 hydrog REVERSED WATSON-CRICK A PSU 27 A N3 PSU 27 1_555 A A 43 A N1 A 43 1_555 hydrog REVERSED WATSON-CRICK A PSU 27 A O2 PSU 27 1_555 A A 43 A N6 A 43 1_555 hydrog WATSON-CRICK A C 28 A N3 C 28 1_555 A G 42 A N1 G 42 1_555 hydrog WATSON-CRICK A C 28 A N4 C 28 1_555 A G 42 A O6 G 42 1_555 hydrog WATSON-CRICK A C 28 A O2 C 28 1_555 A G 42 A N2 G 42 1_555 hydrog WATSON-CRICK A A 29 A N1 A 29 1_555 A U 41 A N3 U 41 1_555 hydrog WATSON-CRICK A A 29 A N6 A 29 1_555 A U 41 A O4 U 41 1_555 hydrog WATSON-CRICK A G 30 A N1 G 30 1_555 A C 40 A N3 C 40 1_555 hydrog WATSON-CRICK A G 30 A N2 G 30 1_555 A C 40 A O2 C 40 1_555 hydrog WATSON-CRICK A G 30 A O6 G 30 1_555 A C 40 A N4 C 40 1_555 hydrog REVERSED WATSON-CRICK A A 31 A N1 A 31 1_555 A PSU 39 A N3 PSU 39 1_555 hydrog REVERSED WATSON-CRICK A A 31 A N6 A 31 1_555 A PSU 39 A O2 PSU 39 1_555 hydrog C-A MISPAIR A C 32 A O2 C 32 1_555 A A 38 A N6 A 38 1_555 hydrog WATSON-CRICK A 5MC 49 A N3 5MC 49 1_555 A G 65 A N1 G 65 1_555 hydrog WATSON-CRICK A 5MC 49 A N4 5MC 49 1_555 A G 65 A O6 G 65 1_555 hydrog WATSON-CRICK A 5MC 49 A O2 5MC 49 1_555 A G 65 A N2 G 65 1_555 hydrog WATSON-CRICK A A 50 A N1 A 50 1_555 A U 64 A N3 U 64 1_555 hydrog WATSON-CRICK A A 50 A N6 A 50 1_555 A U 64 A O4 U 64 1_555 hydrog WATSON-CRICK A G 51 A N1 G 51 1_555 A C 63 A N3 C 63 1_555 hydrog WATSON-CRICK A G 51 A N2 G 51 1_555 A C 63 A O2 C 63 1_555 hydrog WATSON-CRICK A G 51 A O6 G 51 1_555 A C 63 A N4 C 63 1_555 hydrog TYPE_28_PAIR A G 51 A N1 G 51 1_555 A U 64 A O2 U 64 1_555 hydrog TYPE_28_PAIR A G 51 A O6 G 51 1_555 A U 64 A N3 U 64 1_555 hydrog WATSON-CRICK A G 52 A N1 G 52 1_555 A C 62 A N3 C 62 1_555 hydrog WATSON-CRICK A G 52 A N2 G 52 1_555 A C 62 A O2 C 62 1_555 hydrog WATSON-CRICK A G 52 A O6 G 52 1_555 A C 62 A N4 C 62 1_555 hydrog WATSON-CRICK A G 53 A N1 G 53 1_555 A C 61 A N3 C 61 1_555 hydrog WATSON-CRICK A G 53 A N2 G 53 1_555 A C 61 A O2 C 61 1_555 hydrog WATSON-CRICK A G 53 A O6 G 53 1_555 A C 61 A N4 C 61 1_555 hydrog REVERSED HOOGSTEEN A 2MU 54 A N3 2MU 54 1_555 A 1MA 58 A N7 1MA 58 1_555 hydrog REVERSED HOOGSTEEN A 2MU 54 A O2 2MU 54 1_555 A 1MA 58 A N6 1MA 58 1_555 RNA mammalian transfert ribonucleic acid, HIV-1 primer tRNA, amino acid transport, canonical tRNA structure, canonical anticodon, frameshifting, codon/anticodon mimicry, modified bases, RNA 1FIR PDB 1 1FIR 1 76 1FIR 1 76 1FIR A 1 1 76 BINDING SITE FOR RESIDUE NA A 202 A NA 202 Software 1 A G 42 A G 42 1 1_555 153 trigonal P 32 1 2