0.009929
0.005732
0.000000
0.000000
0.011464
0.000000
0.000000
0.000000
0.012105
0.00000
0.00000
0.00000
Benas, P.
Dumas, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
100.72
100.72
82.61
C16 H23 N6 O11 P S
538.426
n
2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C11 H16 N5 O7 P
361.248
n
6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
RNA linking
C11 H16 N5 O8 P
377.247
n
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C11 H17 N2 O9 P
352.234
n
2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H16 N3 O8 P
337.223
n
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C12 H17 N2 O10 P S
412.310
n
5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'-MONOPHOSPHATE
RNA linking
C11 H18 N5 O8 P
379.263
n
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H15 N2 O9 P
326.197
n
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H13 N2 O9 P
324.181
n
PSEUDOURIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
UK
RNA
RNARFU
2122
1355-8382
6
1347
1355
10.1017/S1355838200000911
11073212
The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop.
2000
To be Published
0353
Molecular blocs in tRNAs that could prevent +1 frameshifting
2000
Thesis
1
313
Studies on the ternary initiation complex of HIV-1 reverse transcription and crystallographic structures of two partners
2000
10.2210/pdb1fir/pdb
pdb_00001fir
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
110
1
CCD
1998-02-02
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.9805
1.0
BM02
ESRF
0.9805
SYNCHROTRON
ESRF BEAMLINE BM02
24847.088
HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)
1
nat
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
16
nat
water
no
yes
GCCCG(2MG)AUA(2MG)CUCAG(H2U)CGG(H2U)AGAGCA(PSU)CAGACU(70U)UU(12A)A(PSU)CUGAGG
(7MG)(H2U)(5MC)(5MC)AGGG(2MU)(PSU)CA(1MA)GUCCCUGUUCGGGCGCCA
GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
THIS SEQUENCE OCCURS NATURALLY IN HUMANS, BOVINES AND CHICKENS
Bos
sample
9913
Bos taurus
1
5.12
78.73
VAPOR DIFFUSION, HANGING DROP
5.6
50 mM MES-KOH pH 5.6, 1.6 to 1.8 M Li2SO4, 10 mM MgCl2, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
Li2SO4
1
MgCl2
1
MES-KOH
1
Li2SO4
2
MgCl2
2
MES-KOH
2
3.841
1
19
A
1
A
72
4.417
A_G1:C72_A
1
-1.781
-0.243
0.210
-0.280
5.120
1
19
A
2
A
71
3.212
A_C2:G71_A
2
-8.160
0.238
-0.452
-0.182
2.675
1
19
A
3
A
70
3.900
A_C3:G70_A
3
-7.934
0.338
-0.212
-0.236
10.210
1
19
A
4
A
69
-1.297
A_C4:G69_A
4
-7.274
0.266
-0.075
-0.150
8.525
1
19
A
5
A
68
-0.411
A_G5:C68_A
5
-2.386
-0.065
0.759
-0.118
2.496
1
28
A
6
A
67
6.154
A_2MG6:U67_A
6
1.954
-2.018
0.234
-0.272
-6.536
1
20
A
7
A
66
3.730
A_A7:U66_A
7
12.708
-0.062
-0.439
-0.038
-18.204
1
19
A
49
A
65
2.082
A_5MC49:G65_A
8
9.312
-0.005
0.949
-0.165
-0.463
1
20
A
50
A
64
7.791
A_A50:U64_A
9
2.493
0.001
-0.615
-0.190
-7.667
1
19
A
51
A
63
-1.821
A_G51:C63_A
10
-2.276
0.093
-1.227
-0.363
-19.480
1
19
A
52
A
62
3.679
A_G52:C62_A
11
-7.346
-0.012
-0.531
-0.015
-23.600
1
19
A
53
A
61
1.641
A_G53:C61_A
12
-9.300
-0.291
-0.576
-0.012
-3.881
4
24
A
54
A
58
-104.032
A_2MU54:1MA58_A
13
3.721
4.646
0.366
-2.355
20.730
2
A
55
A
18
-100.558
A_PSU55:G18_A
14
21.614
0.392
0.345
-5.318
23.453
1
A
38
A
32
-35.547
A_A38:C32_A
15
7.908
-3.743
1.873
-1.229
21.782
1
21
A
39
A
31
-5.313
A_PSU39:A31_A
16
-16.655
-0.369
-0.193
-0.077
8.637
1
19
A
40
A
30
1.608
A_C40:G30_A
17
-9.933
0.195
0.029
-0.091
1.048
1
20
A
41
A
29
9.797
A_U41:A29_A
18
2.321
0.205
0.037
-0.309
4.233
1
19
A
42
A
28
-1.741
A_G42:C28_A
19
-3.656
-0.271
1.227
-0.597
-7.915
1
21
A
43
A
27
-10.890
A_A43:PSU27_A
20
-8.028
0.139
1.076
-0.174
-24.905
8
A
44
A
26
-33.470
A_G44:A26_A
21
-14.294
0.032
0.446
1.770
5.624
1
19
A
10
A
25
4.141
A_2MG10:C25_A
22
-6.816
-0.291
-0.368
-0.256
-10.757
1
19
A
11
A
24
-2.697
A_C11:G24_A
23
-7.794
0.084
-0.270
-0.252
-18.503
1
20
A
12
A
23
-2.429
A_U12:A23_A
24
-4.956
0.009
0.438
-0.038
6.631
1
19
A
13
A
22
2.590
A_C13:G22_A
25
-5.813
0.116
-0.322
-0.131
9.735
5
A
14
A
21
57.790
A_A14:A21_A
26
-3.042
-6.318
-0.290
-0.416
12.048
2
22
A
15
A
48
152.650
A_G15:5MC48_A
27
5.652
-0.038
0.217
4.107
-22.837
1
19
A
19
A
56
1.037
A_G19:C56_A
28
-9.467
0.533
-0.374
-0.279
2.682
26.854
A
A
1
2
11.805
A
A
72
71
3.251
5.409
-0.416
-1.802
AA_G1C2:G71C72_AA
1
5.415
-11.817
25.759
-5.171
2.188
2.464
34.822
A
A
2
3
18.593
A
A
71
70
3.197
10.946
0.084
-1.880
AA_C2C3:G70G71_AA
2
-1.418
2.409
33.078
-4.622
-0.333
2.807
33.715
A
A
3
4
11.338
A
A
70
69
3.154
6.536
-0.195
-1.523
AA_C3C4:G69G70_AA
3
0.492
-0.854
33.090
-3.603
0.409
1.788
33.341
A
A
4
5
24.924
A
A
69
68
2.851
13.794
-0.270
-2.013
AA_C4G5:C68G69_AA
4
-6.558
11.850
29.726
-5.234
-0.351
2.467
29.861
A
A
5
6
11.800
A
A
68
67
2.995
6.038
0.605
-2.204
AA_G52MG6:U67C68_AA
5
-1.453
2.839
29.222
-5.336
-1.428
2.487
38.200
A
A
6
7
17.088
A
A
67
66
3.198
11.006
-0.422
-1.821
AA_2MG6A7:U66U67_AA
6
4.878
-7.574
36.320
-4.021
1.194
3.930
36.401
A
A
7
49
-5.919
A
A
66
65
3.674
-3.672
-0.646
-2.231
AA_A75MC49:G65U66_AA
7
-6.718
10.829
35.614
-2.971
-0.064
2.715
31.642
A
A
49
50
-3.697
A
A
65
64
2.736
-1.969
0.082
-2.313
AA_5MC49A50:U64G65_AA
8
11.748
-22.062
29.368
-3.927
1.731
2.462
38.416
A
A
50
51
25.098
A
A
64
63
3.273
16.041
-0.745
-1.253
AA_A50G51:C63U64_AA
9
1.217
-1.904
35.002
-3.746
1.272
2.947
28.569
A
A
51
52
16.400
A
A
63
62
3.610
7.944
0.518
-1.360
AA_G51G52:C62C63_AA
10
-5.233
10.803
26.970
-4.621
-2.278
3.265
34.236
A
A
52
53
9.095
A
A
62
61
3.595
5.328
0.652
-2.186
AA_G52G53:C61C62_AA
11
2.913
-4.972
33.710
-4.600
-0.623
3.008
93.310
A
A
53
54
-1.633
A
A
61
58
2.892
-2.374
-1.997
-2.051
AA_G532MU54:1MA58C61_AA
12
-4.797
3.299
93.192
-1.370
1.293
4.158
37.394
A
A
54
55
1.393
A
A
58
18
3.625
0.864
2.175
-2.112
AA_2MU54PSU55:G181MA58_AA
13
16.435
-26.483
33.694
-3.438
-0.672
3.744
41.031
A
A
38
39
9.128
A
A
32
31
3.912
6.362
1.665
-1.878
AA_A38PSU39:A31C32_AA
14
4.529
-6.498
40.313
-3.498
-1.793
3.401
44.792
A
A
39
40
8.420
A
A
31
30
3.655
6.396
0.393
-1.586
AA_PSU39C40:G30A31_AA
15
-0.564
0.743
44.353
-2.712
-0.572
2.808
28.693
A
A
40
41
13.319
A
A
30
29
3.262
6.543
0.498
-1.742
AA_C40U41:A29G30_AA
16
1.218
-2.480
27.926
-4.903
-0.746
1.893
31.604
A
A
41
42
17.516
A
A
29
28
2.585
9.354
-0.055
-1.902
AA_U41G42:C28A29_AA
17
-5.585
10.458
29.712
-4.718
-0.631
3.348
38.905
A
A
42
43
-1.338
A
A
28
27
3.336
-0.889
-0.059
-2.118
AA_G42A43:PSU27C28_AA
18
5.029
-7.571
38.581
-3.069
0.715
2.393
31.542
A
A
43
44
16.371
A
A
27
26
3.334
8.740
-1.260
-1.998
AA_A43G44:A26PSU27_AA
19
5.673
-10.626
29.813
-5.141
3.269
1.887
68.059
A
A
44
10
1.768
A
A
26
25
2.757
1.955
-2.604
-3.575
AA_G442MG10:C25A26_AA
20
20.055
-18.130
65.353
-3.248
2.879
2.634
35.301
A
A
10
11
23.790
A
A
25
24
3.523
14.042
-0.812
-1.696
AA_2MG10C11:G24C25_AA
21
-2.186
3.703
32.398
-4.844
1.020
3.489
39.058
A
A
11
12
7.769
A
A
24
23
3.655
5.178
-0.043
-1.053
AA_C11U12:A23G24_AA
22
-1.963
2.946
38.679
-2.259
-0.195
2.739
29.938
A
A
12
13
-0.100
A
A
23
22
2.500
-0.051
1.308
-1.712
AA_U12C13:G22A23_AA
23
7.139
-13.947
29.093
-3.306
-1.332
5.363
-14.477
A
A
13
14
-38.870
A
A
22
21
3.171
8.125
2.863
-3.359
AA_C13A14:A21G22_AA
24
-9.509
-45.490
-7.304
0.719
-3.395
1.930
12.660
A
A
14
15
-23.512
A
A
21
48
3.583
-4.405
0.336
-0.481
AA_A14G15:5MC48A21_AA
25
-9.513
50.775
7.107
3.379
-13.533
diffrn_source
diffrn_source
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Derived calculations
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2001-01-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2014-04-09
1
4
2018-04-04
1
5
2018-04-11
1
6
2023-08-02
_diffrn_source.type
_diffrn_source.pdbx_synchrotron_beamline
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NDB
Y
NDB
2000-08-06
REL
REL
MG
MAGNESIUM ION
NA
SODIUM ION
HOH
water
4TNA
PDB
experimental model
MG
201
2
MG
MG
201
A
NA
202
3
NA
NA
202
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
303
4
HOH
HOH
303
A
HOH
304
4
HOH
HOH
304
A
HOH
305
4
HOH
HOH
305
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
G
1
n
1
G
1
A
C
2
n
2
C
2
A
C
3
n
3
C
3
A
C
4
n
4
C
4
A
G
5
n
5
G
5
A
2MG
6
n
6
2MG
6
A
A
7
n
7
A
7
A
U
8
n
8
U
8
A
A
9
n
9
A
9
A
2MG
10
n
10
2MG
10
A
C
11
n
11
C
11
A
U
12
n
12
U
12
A
C
13
n
13
C
13
A
A
14
n
14
A
14
A
G
15
n
15
G
15
A
DHU
16
n
16
H2U
16
A
C
17
n
17
C
17
A
G
18
n
18
G
18
A
G
19
n
19
G
19
A
DHU
20
n
20
H2U
20
A
A
21
n
21
A
21
A
G
22
n
22
G
22
A
A
23
n
23
A
23
A
G
24
n
24
G
24
A
C
25
n
25
C
25
A
A
26
n
26
A
26
A
PSU
27
n
27
PSU
27
A
C
28
n
28
C
28
A
A
29
n
29
A
29
A
G
30
n
30
G
30
A
A
31
n
31
A
31
A
C
32
n
32
C
32
A
U
33
n
33
U
33
A
70U
34
n
34
70U
34
A
U
35
n
35
U
35
A
U
36
n
36
U
36
A
12A
37
n
37
12A
37
A
A
38
n
38
A
38
A
PSU
39
n
39
PSU
39
A
C
40
n
40
C
40
A
U
41
n
41
U
41
A
G
42
n
42
G
42
A
A
43
n
43
A
43
A
G
44
n
44
G
44
A
G
45
n
45
G
45
A
7MG
46
n
46
7MG
46
A
DHU
47
n
47
H2U
47
A
5MC
48
n
48
5MC
48
A
5MC
49
n
49
5MC
49
A
A
50
n
50
A
50
A
G
51
n
51
G
51
A
G
52
n
52
G
52
A
G
53
n
53
G
53
A
2MU
54
n
54
2MU
54
A
PSU
55
n
55
PSU
55
A
C
56
n
56
C
56
A
A
57
n
57
A
57
A
1MA
58
n
58
1MA
58
A
G
59
n
59
G
59
A
U
60
n
60
U
60
A
C
61
n
61
C
61
A
C
62
n
62
C
62
A
C
63
n
63
C
63
A
U
64
n
64
U
64
A
G
65
n
65
G
65
A
U
66
n
66
U
66
A
U
67
n
67
U
67
A
C
68
n
68
C
68
A
G
69
n
69
G
69
A
G
70
n
70
G
70
A
G
71
n
71
G
71
A
C
72
n
72
C
72
A
G
73
n
73
G
73
A
C
74
n
74
C
74
A
C
75
n
75
C
75
A
A
76
n
76
A
76
A
author_defined_assembly
1
monomeric
A
2MG
6
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
2MG
6
G
A
2MG
10
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
A
2MG
10
G
A
H2U
16
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
16
U
A
H2U
20
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
20
U
A
PSU
27
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
27
U
A
70U
34
A
70U
34
U
A
12A
37
A
12A
37
A
A
PSU
39
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
39
U
A
7MG
46
A
7MG
46
G
A
H2U
47
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
A
H2U
47
U
A
5MC
48
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
A
5MC
48
C
A
5MC
49
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
A
5MC
49
C
A
2MU
54
2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE
A
2MU
54
U
A
PSU
55
PSEUDOURIDINE-5'-MONOPHOSPHATE
A
PSU
55
U
A
1MA
58
A
1MA
58
A
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C3'
U
60
PLANAR
1
A
A
O4'
O2'
U
5MC
8
48
2.17
1
A
G
5
0.052
SIDE CHAIN
1
A
G
42
0.054
SIDE CHAIN
1
8.10
1.30
114.00
122.10
A
A
A
N9
C1'
C2'
A
A
A
9
9
9
N
1
9.59
1.30
114.00
123.59
A
A
A
N1
C1'
C2'
C
C
C
17
17
17
N
1
5.04
0.70
108.50
113.54
A
A
A
O4'
C1'
N9
G
G
G
19
19
19
B
B
B
N
1
17.69
1.60
113.70
131.39
A
A
A
C2'
C3'
O3'
U
U
U
60
60
60
N
1
A
A
P
OP3
G
G
1
1
-0.081
0.012
1.607
1.526
N
DNA-RNA-REP-RESIPARAM.BP
DNA-RNA-RESITOP.BP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
33.2
4.53
7.03
0.00
4.53
0.00
-9.07
R and free R improved by 12% and 11% respectively by a proper
mask definition (see primary ref.)
0.2270000
0.010
0.1810000
0.1810000
3.30
40.00
543
6481
5890
9.2
80.5
RANDOM
836049.77
0.00
1
RESTRAINED
THROUGHOUT
3.0
MOLECULAR REPLACEMENT
4TNA
modified CNS libraries (Parkinson et al.)
FLAT MODEL
34.19
0.03
0.41
0.31
5.00
0.21
0.21
3.30
40.00
16
1663
2
1645
0
0.009
1.5
19.2
2.06
0.2340000
0.040
0.2210000
3.51
34
666
6
4.9
58.1
3.30
40.0
1FIR
6482
6482
0.0
0.0
0.0810000
1
10.5
3.2
88.2
3.30
3.42
4.3
503
0.1650000
1
2.2
71.6
phasing
AMoRE
refinement
CNS
0.4
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)
1
N
N
2
N
N
3
N
N
4
N
N
covale
1.615
both
A
G
5
A
O3'
G
5
1_555
A
2MG
6
A
P
2MG
6
1_555
covale
1.596
both
A
2MG
6
A
O3'
2MG
6
1_555
A
A
7
A
P
A
7
1_555
covale
1.587
both
A
A
9
A
O3'
A
9
1_555
A
2MG
10
A
P
2MG
10
1_555
covale
1.598
both
A
2MG
10
A
O3'
2MG
10
1_555
A
C
11
A
P
C
11
1_555
covale
1.603
both
A
G
15
A
O3'
G
15
1_555
A
H2U
16
A
P
H2U
16
1_555
covale
1.607
both
A
H2U
16
A
O3'
H2U
16
1_555
A
C
17
A
P
C
17
1_555
covale
1.591
both
A
A
A
G
19
A
O3'
G
19
1_555
A
H2U
20
A
P
H2U
20
1_555
covale
1.588
both
B
B
A
G
19
A
O3'
G
19
1_555
A
H2U
20
A
P
H2U
20
1_555
covale
1.609
both
A
A
H2U
20
A
O3'
H2U
20
1_555
A
A
21
A
P
A
21
1_555
covale
1.624
both
B
A
H2U
20
A
O3'
H2U
20
1_555
A
A
21
A
P
A
21
1_555
covale
1.604
both
A
A
26
A
O3'
A
26
1_555
A
PSU
27
A
P
PSU
27
1_555
covale
1.606
both
A
PSU
27
A
O3'
PSU
27
1_555
A
C
28
A
P
C
28
1_555
covale
1.604
both
A
U
33
A
O3'
U
33
1_555
A
70U
34
A
P
70U
34
1_555
covale
1.602
both
A
70U
34
A
O3'
70U
34
1_555
A
U
35
A
P
U
35
1_555
covale
1.595
both
A
U
36
A
O3'
U
36
1_555
A
12A
37
A
P
12A
37
1_555
covale
1.604
both
A
12A
37
A
O3'
12A
37
1_555
A
A
38
A
P
A
38
1_555
covale
1.600
both
A
A
38
A
O3'
A
38
1_555
A
PSU
39
A
P
PSU
39
1_555
covale
1.610
both
A
PSU
39
A
O3'
PSU
39
1_555
A
C
40
A
P
C
40
1_555
covale
1.604
both
A
G
45
A
O3'
G
45
1_555
A
7MG
46
A
P
7MG
46
1_555
covale
1.587
both
A
7MG
46
A
O3'
7MG
46
1_555
A
H2U
47
A
P
H2U
47
1_555
covale
1.591
both
A
H2U
47
A
O3'
H2U
47
1_555
A
5MC
48
A
P
5MC
48
1_555
covale
1.598
both
A
5MC
48
A
O3'
5MC
48
1_555
A
5MC
49
A
P
5MC
49
1_555
covale
1.584
both
A
5MC
49
A
O3'
5MC
49
1_555
A
A
50
A
P
A
50
1_555
covale
1.596
both
A
G
53
A
O3'
G
53
1_555
A
2MU
54
A
P
2MU
54
1_555
covale
1.586
both
A
2MU
54
A
O3'
2MU
54
1_555
A
PSU
55
A
P
PSU
55
1_555
covale
1.603
both
A
PSU
55
A
O3'
PSU
55
1_555
A
C
56
A
P
C
56
1_555
covale
1.610
both
A
A
57
A
O3'
A
57
1_555
A
1MA
58
A
P
1MA
58
1_555
covale
1.593
both
A
1MA
58
A
O3'
1MA
58
1_555
A
G
59
A
P
G
59
1_555
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
72
A
N3
C
72
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
72
A
O2
C
72
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
72
A
N4
C
72
1_555
hydrog
WATSON-CRICK
A
C
2
A
N3
C
2
1_555
A
G
71
A
N1
G
71
1_555
hydrog
WATSON-CRICK
A
C
2
A
N4
C
2
1_555
A
G
71
A
O6
G
71
1_555
hydrog
WATSON-CRICK
A
C
2
A
O2
C
2
1_555
A
G
71
A
N2
G
71
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
A
G
70
A
N1
G
70
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
A
G
70
A
O6
G
70
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
A
G
70
A
N2
G
70
1_555
hydrog
WATSON-CRICK
A
C
4
A
N3
C
4
1_555
A
G
69
A
N1
G
69
1_555
hydrog
WATSON-CRICK
A
C
4
A
N4
C
4
1_555
A
G
69
A
O6
G
69
1_555
hydrog
WATSON-CRICK
A
C
4
A
O2
C
4
1_555
A
G
69
A
N2
G
69
1_555
hydrog
WATSON-CRICK
A
G
5
A
N1
G
5
1_555
A
C
68
A
N3
C
68
1_555
hydrog
WATSON-CRICK
A
G
5
A
N2
G
5
1_555
A
C
68
A
O2
C
68
1_555
hydrog
WATSON-CRICK
A
G
5
A
O6
G
5
1_555
A
C
68
A
N4
C
68
1_555
hydrog
TYPE_28_PAIR
A
2MG
6
A
N1
2MG
6
1_555
A
U
67
A
O2
U
67
1_555
hydrog
TYPE_28_PAIR
A
2MG
6
A
O6
2MG
6
1_555
A
U
67
A
N3
U
67
1_555
hydrog
WATSON-CRICK
A
A
7
A
N1
A
7
1_555
A
U
66
A
N3
U
66
1_555
hydrog
WATSON-CRICK
A
A
7
A
N6
A
7
1_555
A
U
66
A
O4
U
66
1_555
hydrog
REVERSED HOOGSTEEN
A
U
8
A
N3
U
8
1_555
A
A
14
A
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
A
U
8
A
O2
U
8
1_555
A
A
14
A
N6
A
14
1_555
hydrog
TYPE_2_PAIR
A
A
9
A
N6
A
9
1_555
A
A
23
A
N7
A
23
1_555
hydrog
TYPE_2_PAIR
A
A
9
A
N7
A
9
1_555
A
A
23
A
N6
A
23
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
N1
2MG
10
1_555
A
C
25
A
N3
C
25
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
N2
2MG
10
1_555
A
C
25
A
O2
C
25
1_555
hydrog
WATSON-CRICK
A
2MG
10
A
O6
2MG
10
1_555
A
C
25
A
N4
C
25
1_555
hydrog
2MG-G MISPAIR
A
2MG
10
A
O6
2MG
10
1_555
A
G
45
A
N2
G
45
1_555
hydrog
WATSON-CRICK
A
C
11
A
N3
C
11
1_555
A
G
24
A
N1
G
24
1_555
hydrog
WATSON-CRICK
A
C
11
A
N4
C
11
1_555
A
G
24
A
O6
G
24
1_555
hydrog
WATSON-CRICK
A
C
11
A
O2
C
11
1_555
A
G
24
A
N2
G
24
1_555
hydrog
WATSON-CRICK
A
U
12
A
N3
U
12
1_555
A
A
23
A
N1
A
23
1_555
hydrog
WATSON-CRICK
A
U
12
A
O4
U
12
1_555
A
A
23
A
N6
A
23
1_555
hydrog
WATSON-CRICK
A
C
13
A
N3
C
13
1_555
A
G
22
A
N1
G
22
1_555
hydrog
WATSON-CRICK
A
C
13
A
N4
C
13
1_555
A
G
22
A
O6
G
22
1_555
hydrog
WATSON-CRICK
A
C
13
A
O2
C
13
1_555
A
G
22
A
N2
G
22
1_555
hydrog
A-A MISPAIR
A
A
14
A
N6
A
14
1_555
A
A
21
A
N3
A
21
1_555
hydrog
REVERSED WATSON-CRICK
A
G
15
A
N1
G
15
1_555
A
5MC
48
A
O2
5MC
48
1_555
hydrog
REVERSED WATSON-CRICK
A
G
15
A
N2
G
15
1_555
A
5MC
48
A
N3
5MC
48
1_555
hydrog
G-PSU MISPAIR
A
G
18
A
N1
G
18
1_555
A
PSU
55
A
O4
PSU
55
1_555
hydrog
WATSON-CRICK
A
A
G
19
A
N1
G
19
1_555
A
C
56
A
N3
C
56
1_555
hydrog
WATSON-CRICK
A
A
G
19
A
N2
G
19
1_555
A
C
56
A
O2
C
56
1_555
hydrog
WATSON-CRICK
A
A
G
19
A
O6
G
19
1_555
A
C
56
A
N4
C
56
1_555
hydrog
TYPE_7_PAIR
A
G
22
A
N7
G
22
1_555
A
7MG
46
A
N1
7MG
46
1_555
hydrog
TYPE_7_PAIR
A
G
22
A
O6
G
22
1_555
A
7MG
46
A
N2
7MG
46
1_555
hydrog
TYPE_8_PAIR
A
A
26
A
N1
A
26
1_555
A
G
44
A
N1
G
44
1_555
hydrog
TYPE_8_PAIR
A
A
26
A
N6
A
26
1_555
A
G
44
A
O6
G
44
1_555
hydrog
REVERSED WATSON-CRICK
A
PSU
27
A
N3
PSU
27
1_555
A
A
43
A
N1
A
43
1_555
hydrog
REVERSED WATSON-CRICK
A
PSU
27
A
O2
PSU
27
1_555
A
A
43
A
N6
A
43
1_555
hydrog
WATSON-CRICK
A
C
28
A
N3
C
28
1_555
A
G
42
A
N1
G
42
1_555
hydrog
WATSON-CRICK
A
C
28
A
N4
C
28
1_555
A
G
42
A
O6
G
42
1_555
hydrog
WATSON-CRICK
A
C
28
A
O2
C
28
1_555
A
G
42
A
N2
G
42
1_555
hydrog
WATSON-CRICK
A
A
29
A
N1
A
29
1_555
A
U
41
A
N3
U
41
1_555
hydrog
WATSON-CRICK
A
A
29
A
N6
A
29
1_555
A
U
41
A
O4
U
41
1_555
hydrog
WATSON-CRICK
A
G
30
A
N1
G
30
1_555
A
C
40
A
N3
C
40
1_555
hydrog
WATSON-CRICK
A
G
30
A
N2
G
30
1_555
A
C
40
A
O2
C
40
1_555
hydrog
WATSON-CRICK
A
G
30
A
O6
G
30
1_555
A
C
40
A
N4
C
40
1_555
hydrog
REVERSED WATSON-CRICK
A
A
31
A
N1
A
31
1_555
A
PSU
39
A
N3
PSU
39
1_555
hydrog
REVERSED WATSON-CRICK
A
A
31
A
N6
A
31
1_555
A
PSU
39
A
O2
PSU
39
1_555
hydrog
C-A MISPAIR
A
C
32
A
O2
C
32
1_555
A
A
38
A
N6
A
38
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
N3
5MC
49
1_555
A
G
65
A
N1
G
65
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
N4
5MC
49
1_555
A
G
65
A
O6
G
65
1_555
hydrog
WATSON-CRICK
A
5MC
49
A
O2
5MC
49
1_555
A
G
65
A
N2
G
65
1_555
hydrog
WATSON-CRICK
A
A
50
A
N1
A
50
1_555
A
U
64
A
N3
U
64
1_555
hydrog
WATSON-CRICK
A
A
50
A
N6
A
50
1_555
A
U
64
A
O4
U
64
1_555
hydrog
WATSON-CRICK
A
G
51
A
N1
G
51
1_555
A
C
63
A
N3
C
63
1_555
hydrog
WATSON-CRICK
A
G
51
A
N2
G
51
1_555
A
C
63
A
O2
C
63
1_555
hydrog
WATSON-CRICK
A
G
51
A
O6
G
51
1_555
A
C
63
A
N4
C
63
1_555
hydrog
TYPE_28_PAIR
A
G
51
A
N1
G
51
1_555
A
U
64
A
O2
U
64
1_555
hydrog
TYPE_28_PAIR
A
G
51
A
O6
G
51
1_555
A
U
64
A
N3
U
64
1_555
hydrog
WATSON-CRICK
A
G
52
A
N1
G
52
1_555
A
C
62
A
N3
C
62
1_555
hydrog
WATSON-CRICK
A
G
52
A
N2
G
52
1_555
A
C
62
A
O2
C
62
1_555
hydrog
WATSON-CRICK
A
G
52
A
O6
G
52
1_555
A
C
62
A
N4
C
62
1_555
hydrog
WATSON-CRICK
A
G
53
A
N1
G
53
1_555
A
C
61
A
N3
C
61
1_555
hydrog
WATSON-CRICK
A
G
53
A
N2
G
53
1_555
A
C
61
A
O2
C
61
1_555
hydrog
WATSON-CRICK
A
G
53
A
O6
G
53
1_555
A
C
61
A
N4
C
61
1_555
hydrog
REVERSED HOOGSTEEN
A
2MU
54
A
N3
2MU
54
1_555
A
1MA
58
A
N7
1MA
58
1_555
hydrog
REVERSED HOOGSTEEN
A
2MU
54
A
O2
2MU
54
1_555
A
1MA
58
A
N6
1MA
58
1_555
RNA
mammalian transfert ribonucleic acid, HIV-1 primer tRNA, amino acid transport, canonical tRNA structure, canonical anticodon, frameshifting, codon/anticodon mimicry, modified bases, RNA
1FIR
PDB
1
1FIR
1
76
1FIR
1
76
1FIR
A
1
1
76
BINDING SITE FOR RESIDUE NA A 202
A
NA
202
Software
1
A
G
42
A
G
42
1
1_555
153
trigonal
P 32 1 2