1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Chen, H. Liu, X. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H11 N O2 117.146 D-VALINE D-peptide linking C6 H13 N O2 131.173 n N-METHYLVALINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C16 H12 N2 O4 296.277 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE non-polymer C3 H7 N O2 89.093 n SARCOSINE peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 R C N 146 N C N 147 N C N 148 N C N 149 N C N 150 N O N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 N C N 165 S C N 166 N C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H Y 202 N C N 203 N C N 204 N O Y 205 N C N 206 N N Y 207 N C N 208 N O Y 209 N C Y 210 N O Y 211 N C Y 212 N C Y 213 N C Y 214 N C N 215 N C N 216 N O Y 217 N N Y 218 N C Y 219 N C Y 220 N C Y 221 N C N 222 N C N 223 N C N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 N C N 238 N C N 239 N O N 240 N C N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 R C N 254 N O N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing Y 207 N doub Y 208 N sing N 209 N doub N 210 N sing N 211 N sing Y 212 N sing N 213 N sing N 214 N sing N 215 N doub Y 216 N sing Y 217 N doub N 218 N sing Y 219 N sing Y 220 N sing Y 221 N doub Y 222 N sing N 223 N sing Y 224 N sing N 225 N sing Y 226 N doub N 227 N sing N 228 N sing Y 229 N sing N 230 N doub N 231 N sing Y 232 N doub Y 233 N sing Y 234 N sing Y 235 N doub N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 258 457 10.1006/JMBI.1996.0262 8642603 DNA Bending and Unwinding Associated with Actinomycin D Antibiotics Bound to Partially Overlapping Sites on DNA. 1996 10.2210/pdb1fja/pdb pdb_00001fja 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2426.617 DNA (5'-D(*AP*AP*GP*CP*GP*CP*TP*T)-3') 2 syn polymer 1259.447 ACTINOMYCIN D 2 syn polymer DACTINOMYCIN no no (DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT) AAGCGCTT A,B polydeoxyribonucleotide no yes T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA) TVPGVXTVPGV C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n -6.396 1 20 A 2 B 7 1.120 A_DA2:DT7_B 1 -8.975 0.348 -0.392 -0.156 13.995 1 19 A 3 B 6 -1.359 A_DG3:DC6_B 2 8.706 -1.015 0.375 -0.414 -11.323 1 19 A 4 B 5 1.874 A_DC4:DG5_B 3 15.149 0.786 0.516 -0.291 10.929 1 19 A 5 B 4 1.809 A_DG5:DC4_B 4 14.453 -0.784 0.533 -0.295 -14.029 1 19 A 6 B 3 -1.393 A_DC6:DG3_B 5 7.689 0.984 0.379 -0.397 8.762 1 20 A 7 B 2 1.232 A_DT7:DA2_B 6 -7.280 -0.360 -0.376 -0.154 2.647 21.552 A A 2 3 44.021 B B 7 6 2.874 14.517 0.145 1.228 AA_DA2DG3:DC6DT7_BB 1 -7.659 23.225 14.015 -2.704 -3.549 0.364 -24.757 A A 4 5 -73.691 B B 5 4 3.008 23.745 -0.027 0.521 AA_DC4DG5:DC4DG5_BB 2 0.247 0.766 -7.052 -7.070 -0.002 2.664 20.811 A A 6 7 41.853 B B 3 2 2.793 13.501 -0.104 1.219 AA_DC6DT7:DA2DG3_BB 3 7.087 -21.972 14.205 -2.413 3.327 atom_site chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_validate_polymer_linkage struct_conn repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other Advisory Atomic model Data collection Database references Derived calculations Other 1 0 1996-06-10 1 1 2011-06-14 1 2 2011-07-13 1 3 2011-07-27 1 4 2012-12-12 2 0 2023-11-15 _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id CRYSTAL STRUCTURE OF ACTINOMYCIN Z3 CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2 CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC) CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2 CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2 SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2 CRYSTAL STRUCTURE OF ACTINOMYCIN X2 Y BNL 1995-12-15 REL 1890 STREPTOMYCES ANTIBIOTICUS sample ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) Antibiotic ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) Actinomycin D Polypeptide 5 BRUNGER refinement X-PLOR n 1 1 A DA 2 n 2 DA 2 A DG 3 n 3 DG 3 A DC 4 n 4 DC 4 A DG 5 n 5 DG 5 A DC 6 n 6 DC 6 A DT 7 n 7 DT 7 A n 8 8 A n 1 1 B DA 2 n 2 DA 2 B DG 3 n 3 DG 3 B DC 4 n 4 DC 4 B DG 5 n 5 DG 5 B DC 6 n 6 DC 6 B DT 7 n 7 DT 7 B n 8 8 B THR 1 n 1 THR 1 C DVA 2 n 2 DVA 2 C PRO 3 n 3 PRO 3 C SAR 4 n 4 SAR 4 C MVA 5 n 5 MVA 5 C PXZ 6 n 6 PXZ 6 C THR 7 n 7 THR 7 C DVA 8 n 8 DVA 8 C PRO 9 n 9 PRO 9 C SAR 10 n 10 SAR 10 C MVA 11 n 11 MVA 11 C THR 1 n 1 THR 1 D DVA 2 n 2 DVA 2 D PRO 3 n 3 PRO 3 D SAR 4 n 4 SAR 4 D MVA 5 n 5 MVA 5 D PXZ 6 n 6 PXZ 6 D THR 7 n 7 THR 7 D DVA 8 n 8 DVA 8 D PRO 9 n 9 PRO 9 D SAR 10 n 10 SAR 10 D MVA 11 n 11 MVA 11 D software_defined_assembly PQS 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A P DA 2 A P DA 2 1 Y 1 A OP1 DA 2 A OP1 DA 2 1 Y 1 A OP2 DA 2 A OP2 DA 2 1 Y 1 B P DA 2 B P DA 2 1 Y 1 B OP1 DA 2 B OP1 DA 2 1 Y 1 B OP2 DA 2 B OP2 DA 2 1 Y 2 A P DA 2 A P DA 2 1 Y 2 A OP1 DA 2 A OP1 DA 2 1 Y 2 A OP2 DA 2 A OP2 DA 2 1 Y 2 B P DA 2 B P DA 2 1 Y 2 B OP1 DA 2 B OP1 DA 2 1 Y 2 B OP2 DA 2 B OP2 DA 2 1 Y 3 A P DA 2 A P DA 2 1 Y 3 A OP1 DA 2 A OP1 DA 2 1 Y 3 A OP2 DA 2 A OP2 DA 2 1 Y 3 B P DA 2 B P DA 2 1 Y 3 B OP1 DA 2 B OP1 DA 2 1 Y 3 B OP2 DA 2 B OP2 DA 2 1 Y 4 A P DA 2 A P DA 2 1 Y 4 A OP1 DA 2 A OP1 DA 2 1 Y 4 A OP2 DA 2 A OP2 DA 2 1 Y 4 B P DA 2 B P DA 2 1 Y 4 B OP1 DA 2 B OP1 DA 2 1 Y 4 B OP2 DA 2 B OP2 DA 2 1 Y 5 A P DA 2 A P DA 2 1 Y 5 A OP1 DA 2 A OP1 DA 2 1 Y 5 A OP2 DA 2 A OP2 DA 2 1 Y 5 B P DA 2 B P DA 2 1 Y 5 B OP1 DA 2 B OP1 DA 2 1 Y 5 B OP2 DA 2 B OP2 DA 2 1 Y 1 A DA 1 A DA 1 1 Y 1 A DT 8 A DT 8 1 Y 1 B DA 1 B DA 1 1 Y 1 B DT 8 B DT 8 1 Y 2 A DA 1 A DA 1 1 Y 2 A DT 8 A DT 8 1 Y 2 B DA 1 B DA 1 1 Y 2 B DT 8 B DT 8 1 Y 3 A DA 1 A DA 1 1 Y 3 A DT 8 A DT 8 1 Y 3 B DA 1 B DA 1 1 Y 3 B DT 8 B DT 8 1 Y 4 A DA 1 A DA 1 1 Y 4 A DT 8 A DT 8 1 Y 4 B DA 1 B DA 1 1 Y 4 B DT 8 B DT 8 1 Y 5 A DA 1 A DA 1 1 Y 5 A DT 8 A DT 8 1 Y 5 B DA 1 B DA 1 1 Y 5 B DT 8 B DT 8 1 Y 1 3.45 0.50 113.80 117.25 A A A N7 C8 N9 DA DA DA 2 2 2 N 1 -2.86 0.40 105.80 102.94 A A A C8 N9 C4 DA DA DA 2 2 2 N 1 3.88 0.30 108.30 112.18 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 4.36 0.50 113.10 117.46 A A A N7 C8 N9 DG DG DG 3 3 3 N 1 -2.89 0.40 106.40 103.51 A A A C8 N9 C4 DG DG DG 3 3 3 N 1 4.73 0.60 106.00 110.73 A A A O4' C4' C3' DC DC DC 4 4 4 N 1 2.20 0.30 108.30 110.50 A A A O4' C1' N1 DC DC DC 4 4 4 N 1 4.04 0.50 113.10 117.14 A A A N7 C8 N9 DG DG DG 5 5 5 N 1 -2.59 0.40 106.40 103.81 A A A C8 N9 C4 DG DG DG 5 5 5 N 1 2.06 0.30 108.30 110.36 A A A O4' C1' N1 DC DC DC 6 6 6 N 1 2.96 0.30 108.30 111.26 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 3.40 0.50 113.80 117.20 B B B N7 C8 N9 DA DA DA 2 2 2 N 1 -2.91 0.40 105.80 102.89 B B B C8 N9 C4 DA DA DA 2 2 2 N 1 3.88 0.30 108.30 112.18 B B B O4' C1' N9 DG DG DG 3 3 3 N 1 4.34 0.50 113.10 117.44 B B B N7 C8 N9 DG DG DG 3 3 3 N 1 -2.91 0.40 106.40 103.49 B B B C8 N9 C4 DG DG DG 3 3 3 N 1 4.69 0.60 106.00 110.69 B B B O4' C4' C3' DC DC DC 4 4 4 N 1 2.22 0.30 108.30 110.52 B B B O4' C1' N1 DC DC DC 4 4 4 N 1 4.09 0.50 113.10 117.19 B B B N7 C8 N9 DG DG DG 5 5 5 N 1 -2.64 0.40 106.40 103.76 B B B C8 N9 C4 DG DG DG 5 5 5 N 1 1.94 0.30 108.30 110.24 B B B O4' C1' N1 DC DC DC 6 6 6 N 1 3.08 0.30 108.30 111.38 B B B O4' C1' N1 DT DT DT 7 7 7 N 2 3.15 0.30 108.30 111.45 A A A O4' C1' N9 DA DA DA 2 2 2 N 2 3.47 0.50 113.80 117.27 A A A N7 C8 N9 DA DA DA 2 2 2 N 2 4.85 0.30 108.30 113.15 A A A O4' C1' N9 DG DG DG 3 3 3 N 2 4.17 0.50 113.10 117.27 A A A N7 C8 N9 DG DG DG 3 3 3 N 2 -2.61 0.40 106.40 103.79 A A A C8 N9 C4 DG DG DG 3 3 3 N 2 4.81 0.60 106.00 110.81 A A A O4' C4' C3' DC DC DC 4 4 4 N 2 4.12 0.50 113.10 117.22 A A A N7 C8 N9 DG DG DG 5 5 5 N 2 -2.66 0.40 106.40 103.74 A A A C8 N9 C4 DG DG DG 5 5 5 N 2 2.73 0.30 108.30 111.03 A A A O4' C1' N1 DT DT DT 7 7 7 N 2 3.34 0.30 108.30 111.64 B B B O4' C1' N9 DA DA DA 2 2 2 N 2 3.64 0.50 113.80 117.44 B B B N7 C8 N9 DA DA DA 2 2 2 N 2 4.77 0.30 108.30 113.07 B B B O4' C1' N9 DG DG DG 3 3 3 N 2 4.15 0.50 113.10 117.25 B B B N7 C8 N9 DG DG DG 3 3 3 N 2 -2.53 0.40 106.40 103.87 B B B C8 N9 C4 DG DG DG 3 3 3 N 2 4.70 0.60 106.00 110.70 B B B O4' C4' C3' DC DC DC 4 4 4 N 2 4.13 0.50 113.10 117.23 B B B N7 C8 N9 DG DG DG 5 5 5 N 2 -2.73 0.40 106.40 103.67 B B B C8 N9 C4 DG DG DG 5 5 5 N 2 2.65 0.30 108.30 110.95 B B B O4' C1' N1 DT DT DT 7 7 7 N 3 2.77 0.30 108.30 111.07 A A A O4' C1' N9 DA DA DA 2 2 2 N 3 3.57 0.50 113.80 117.37 A A A N7 C8 N9 DA DA DA 2 2 2 N 3 5.60 0.30 108.30 113.90 A A A O4' C1' N9 DG DG DG 3 3 3 N 3 4.54 0.50 113.10 117.64 A A A N7 C8 N9 DG DG DG 3 3 3 N 3 -3.20 0.40 106.40 103.20 A A A C8 N9 C4 DG DG DG 3 3 3 N 3 4.86 0.60 106.00 110.86 A A A O4' C4' C3' DC DC DC 4 4 4 N 3 1.90 0.30 108.30 110.20 A A A O4' C1' N1 DC DC DC 4 4 4 N 3 4.18 0.50 113.10 117.28 A A A N7 C8 N9 DG DG DG 5 5 5 N 3 -2.66 0.40 106.40 103.74 A A A C8 N9 C4 DG DG DG 5 5 5 N 3 1.82 0.30 108.30 110.12 A A A O4' C1' N1 DC DC DC 6 6 6 N 3 2.99 0.30 108.30 111.29 A A A O4' C1' N1 DT DT DT 7 7 7 N 3 2.74 0.30 108.30 111.04 B B B O4' C1' N9 DA DA DA 2 2 2 N 3 3.51 0.50 113.80 117.31 B B B N7 C8 N9 DA DA DA 2 2 2 N 3 5.49 0.30 108.30 113.79 B B B O4' C1' N9 DG DG DG 3 3 3 N 3 4.58 0.50 113.10 117.68 B B B N7 C8 N9 DG DG DG 3 3 3 N 3 -3.28 0.40 106.40 103.12 B B B C8 N9 C4 DG DG DG 3 3 3 N 3 4.75 0.60 106.00 110.75 B B B O4' C4' C3' DC DC DC 4 4 4 N 3 2.23 0.30 108.30 110.53 B B B O4' C1' N1 DC DC DC 4 4 4 N 3 4.24 0.50 113.10 117.34 B B B N7 C8 N9 DG DG DG 5 5 5 N 3 -2.85 0.40 106.40 103.55 B B B C8 N9 C4 DG DG DG 5 5 5 N 3 1.83 0.30 108.30 110.13 B B B O4' C1' N1 DC DC DC 6 6 6 N 3 2.91 0.30 108.30 111.21 B B B O4' C1' N1 DT DT DT 7 7 7 N 4 3.44 0.50 113.80 117.24 A A A N7 C8 N9 DA DA DA 2 2 2 N 4 -2.77 0.40 105.80 103.03 A A A C8 N9 C4 DA DA DA 2 2 2 N 4 4.24 0.30 108.30 112.54 A A A O4' C1' N9 DG DG DG 3 3 3 N 4 4.28 0.50 113.10 117.38 A A A N7 C8 N9 DG DG DG 3 3 3 N 4 -2.74 0.40 106.40 103.66 A A A C8 N9 C4 DG DG DG 3 3 3 N 4 4.80 0.60 106.00 110.80 A A A O4' C4' C3' DC DC DC 4 4 4 N 4 2.22 0.30 108.30 110.52 A A A O4' C1' N1 DC DC DC 4 4 4 N 4 4.32 0.50 113.10 117.42 A A A N7 C8 N9 DG DG DG 5 5 5 N 4 -2.88 0.40 106.40 103.52 A A A C8 N9 C4 DG DG DG 5 5 5 N 4 1.86 0.30 108.30 110.16 A A A O4' C1' N1 DC DC DC 6 6 6 N 4 2.62 0.30 108.30 110.92 A A A O4' C1' N1 DT DT DT 7 7 7 N 4 3.41 0.50 113.80 117.21 B B B N7 C8 N9 DA DA DA 2 2 2 N 4 -2.65 0.40 105.80 103.15 B B B C8 N9 C4 DA DA DA 2 2 2 N 4 4.17 0.30 108.30 112.47 B B B O4' C1' N9 DG DG DG 3 3 3 N 4 4.34 0.50 113.10 117.44 B B B N7 C8 N9 DG DG DG 3 3 3 N 4 -2.82 0.40 106.40 103.58 B B B C8 N9 C4 DG DG DG 3 3 3 N 4 5.00 0.60 106.00 111.00 B B B O4' C4' C3' DC DC DC 4 4 4 N 4 2.35 0.30 108.30 110.65 B B B O4' C1' N1 DC DC DC 4 4 4 N 4 4.24 0.50 113.10 117.34 B B B N7 C8 N9 DG DG DG 5 5 5 N 4 -2.83 0.40 106.40 103.57 B B B C8 N9 C4 DG DG DG 5 5 5 N 4 2.10 0.30 108.30 110.40 B B B O4' C1' N1 DC DC DC 6 6 6 N 4 2.79 0.30 108.30 111.09 B B B O4' C1' N1 DT DT DT 7 7 7 N 5 3.24 0.50 113.80 117.04 A A A N7 C8 N9 DA DA DA 2 2 2 N 5 -2.61 0.40 105.80 103.19 A A A C8 N9 C4 DA DA DA 2 2 2 N 5 3.97 0.30 108.30 112.27 A A A O4' C1' N9 DG DG DG 3 3 3 N 5 4.28 0.50 113.10 117.38 A A A N7 C8 N9 DG DG DG 3 3 3 N 5 -2.94 0.40 106.40 103.46 A A A C8 N9 C4 DG DG DG 3 3 3 N 5 4.95 0.60 106.00 110.95 A A A O4' C4' C3' DC DC DC 4 4 4 N 5 4.42 0.50 113.10 117.52 A A A N7 C8 N9 DG DG DG 5 5 5 N 5 -3.06 0.40 106.40 103.34 A A A C8 N9 C4 DG DG DG 5 5 5 N 5 3.14 0.30 108.30 111.44 A A A O4' C1' N1 DC DC DC 6 6 6 N 5 2.89 0.30 108.30 111.19 A A A O4' C1' N1 DT DT DT 7 7 7 N 5 3.28 0.50 113.80 117.08 B B B N7 C8 N9 DA DA DA 2 2 2 N 5 -2.60 0.40 105.80 103.20 B B B C8 N9 C4 DA DA DA 2 2 2 N 5 4.02 0.30 108.30 112.32 B B B O4' C1' N9 DG DG DG 3 3 3 N 5 4.28 0.50 113.10 117.38 B B B N7 C8 N9 DG DG DG 3 3 3 N 5 -2.88 0.40 106.40 103.52 B B B C8 N9 C4 DG DG DG 3 3 3 N 5 4.96 0.60 106.00 110.96 B B B O4' C4' C3' DC DC DC 4 4 4 N 5 4.37 0.50 113.10 117.47 B B B N7 C8 N9 DG DG DG 5 5 5 N 5 -3.04 0.40 106.40 103.36 B B B C8 N9 C4 DG DG DG 5 5 5 N 5 3.11 0.30 108.30 111.41 B B B O4' C1' N1 DC DC DC 6 6 6 N 5 2.73 0.30 108.30 111.03 B B B O4' C1' N1 DT DT DT 7 7 7 N 1 A A C4' C3' DC DC 4 4 -0.064 0.010 1.521 1.457 N 1 B B C4' C3' DC DC 4 4 -0.066 0.010 1.521 1.455 N 2 B B C4' C3' DC DC 4 4 -0.060 0.010 1.521 1.461 N 3 A A C4' C3' DC DC 4 4 -0.066 0.010 1.521 1.455 N 3 B B C4' C3' DC DC 4 4 -0.067 0.010 1.521 1.454 N 4 A A C4' C3' DC DC 4 4 -0.067 0.010 1.521 1.454 N 4 B B C4' C3' DC DC 4 4 -0.064 0.010 1.521 1.457 N 5 A A C4' C3' DC DC 4 4 -0.063 0.010 1.521 1.458 N 5 B B C4' C3' DC DC 4 4 -0.063 0.010 1.521 1.458 N model building X-PLOR refinement X-PLOR phasing X-PLOR NMR STUDY OF DEOXYRIBONUCLEIC ACID COMPLEXED WITH ACTINOMYCIN D 1 N N 1 N N 2 N N 2 N N covale 1.313 both C THR 1 C C THR 1 1_555 C DVA 2 C N DVA 2 1_555 covale 1.386 one C THR 1 C OG1 THR 1 1_555 C MVA 5 C C MVA 5 1_555 covale 1.307 one C THR 1 C N THR 1 1_555 C PXZ 6 C C0 PXZ 6 1_555 covale 1.325 both C DVA 2 C C DVA 2 1_555 C PRO 3 C N PRO 3 1_555 covale 1.333 both C PRO 3 C C PRO 3 1_555 C SAR 4 C N SAR 4 1_555 covale 1.337 both C SAR 4 C C SAR 4 1_555 C MVA 5 C N MVA 5 1_555 covale 1.307 one C PXZ 6 C C0' PXZ 6 1_555 C THR 7 C N THR 7 1_555 covale 1.314 both C THR 7 C C THR 7 1_555 C DVA 8 C N DVA 8 1_555 covale 1.389 one C THR 7 C OG1 THR 7 1_555 C MVA 11 C C MVA 11 1_555 covale 1.323 both C DVA 8 C C DVA 8 1_555 C PRO 9 C N PRO 9 1_555 covale 1.333 both C PRO 9 C C PRO 9 1_555 C SAR 10 C N SAR 10 1_555 covale 1.328 both C SAR 10 C C SAR 10 1_555 C MVA 11 C N MVA 11 1_555 covale 1.313 both D THR 1 D C THR 1 1_555 D DVA 2 D N DVA 2 1_555 covale 1.385 one D THR 1 D OG1 THR 1 1_555 D MVA 5 D C MVA 5 1_555 covale 1.307 one D THR 1 D N THR 1 1_555 D PXZ 6 D C0 PXZ 6 1_555 covale 1.325 both D DVA 2 D C DVA 2 1_555 D PRO 3 D N PRO 3 1_555 covale 1.332 both D PRO 3 D C PRO 3 1_555 D SAR 4 D N SAR 4 1_555 covale 1.339 both D SAR 4 D C SAR 4 1_555 D MVA 5 D N MVA 5 1_555 covale 1.305 one D PXZ 6 D C0' PXZ 6 1_555 D THR 7 D N THR 7 1_555 covale 1.314 both D THR 7 D C THR 7 1_555 D DVA 8 D N DVA 8 1_555 covale 1.387 one D THR 7 D OG1 THR 7 1_555 D MVA 11 D C MVA 11 1_555 covale 1.322 both D DVA 8 D C DVA 8 1_555 D PRO 9 D N PRO 9 1_555 covale 1.334 both D PRO 9 D C PRO 9 1_555 D SAR 10 D N SAR 10 1_555 covale 1.329 both D SAR 10 D C SAR 10 1_555 D MVA 11 D N MVA 11 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 7 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 7 B O4 DT 7 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 B DC 6 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 B DC 6 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 B DC 6 B N4 DC 6 1_555 hydrog WATSON-CRICK A DC 4 A N3 DC 4 1_555 B DG 5 B N1 DG 5 1_555 hydrog WATSON-CRICK A DC 4 A N4 DC 4 1_555 B DG 5 B O6 DG 5 1_555 hydrog WATSON-CRICK A DC 4 A O2 DC 4 1_555 B DG 5 B N2 DG 5 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 B DC 4 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 B DC 4 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 B DC 4 B N4 DC 4 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 B DG 3 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 B DG 3 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 B DG 3 B N2 DG 3 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 2 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 2 B N6 DA 2 1_555 DNA/ANTIBIOTIC ACTINOMYCIN D, ACTINOMYCIN, ANTI CANCER, ANTITUMOR, ANTIBIOTIC, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX C DVA 2 C DVA 2 1 C PRO 3 C PRO 3 1.29 C PRO 3 C PRO 3 1 C SAR 4 C SAR 4 0.04 C DVA 8 C DVA 8 1 C PRO 9 C PRO 9 1.38 C PRO 9 C PRO 9 1 C SAR 10 C SAR 10 0.42 D DVA 2 D DVA 2 1 D PRO 3 D PRO 3 1.24 D PRO 3 D PRO 3 1 D SAR 4 D SAR 4 0.04 D DVA 8 D DVA 8 1 D PRO 9 D PRO 9 1.43 D PRO 9 D PRO 9 1 D SAR 10 D SAR 10 0.17 C DVA 2 C DVA 2 2 C PRO 3 C PRO 3 1.39 C PRO 3 C PRO 3 2 C SAR 4 C SAR 4 -0.28 C DVA 8 C DVA 8 2 C PRO 9 C PRO 9 1.30 C PRO 9 C PRO 9 2 C SAR 10 C SAR 10 0.11 D DVA 2 D DVA 2 2 D PRO 3 D PRO 3 1.33 D PRO 3 D PRO 3 2 D SAR 4 D SAR 4 -0.20 D DVA 8 D DVA 8 2 D PRO 9 D PRO 9 1.22 D PRO 9 D PRO 9 2 D SAR 10 D SAR 10 0.10 C DVA 2 C DVA 2 3 C PRO 3 C PRO 3 0.69 C PRO 3 C PRO 3 3 C SAR 4 C SAR 4 -0.07 C DVA 8 C DVA 8 3 C PRO 9 C PRO 9 1.65 C PRO 9 C PRO 9 3 C SAR 10 C SAR 10 0.11 D DVA 2 D DVA 2 3 D PRO 3 D PRO 3 1.06 D PRO 3 D PRO 3 3 D SAR 4 D SAR 4 -0.01 D DVA 8 D DVA 8 3 D PRO 9 D PRO 9 1.46 D PRO 9 D PRO 9 3 D SAR 10 D SAR 10 0.22 C DVA 2 C DVA 2 4 C PRO 3 C PRO 3 0.85 C PRO 3 C PRO 3 4 C SAR 4 C SAR 4 0.02 C DVA 8 C DVA 8 4 C PRO 9 C PRO 9 0.75 C PRO 9 C PRO 9 4 C SAR 10 C SAR 10 0.29 D DVA 2 D DVA 2 4 D PRO 3 D PRO 3 0.53 D PRO 3 D PRO 3 4 D SAR 4 D SAR 4 -0.01 D DVA 8 D DVA 8 4 D PRO 9 D PRO 9 0.78 D PRO 9 D PRO 9 4 D SAR 10 D SAR 10 0.32 C DVA 2 C DVA 2 5 C PRO 3 C PRO 3 0.81 C PRO 3 C PRO 3 5 C SAR 4 C SAR 4 0.03 C DVA 8 C DVA 8 5 C PRO 9 C PRO 9 0.75 C PRO 9 C PRO 9 5 C SAR 10 C SAR 10 0.57 D DVA 2 D DVA 2 5 D PRO 3 D PRO 3 0.81 D PRO 3 D PRO 3 5 D SAR 4 D SAR 4 0.11 D DVA 8 D DVA 8 5 D PRO 9 D PRO 9 0.83 D PRO 9 D PRO 9 5 D SAR 10 D SAR 10 0.48 1FJA PDB 1 1FJA NOR00228 NOR 2 NOR00228 1 8 1FJA 1 8 1FJA A 1 1 8 1 8 1FJA 1 8 1FJA B 1 1 8 1 11 1FJA 1 11 NOR00228 C 2 1 11 1 11 1FJA 1 11 NOR00228 D 2 1 11 BINDING SITE FOR CHAIN C OF ACTINOMYCIN D Software 9 BINDING SITE FOR CHAIN D OF ACTINOMYCIN D Software 9 A DA 2 A DA 2 9 1_555 A DG 3 A DG 3 9 1_555 A DC 4 A DC 4 9 1_555 B DG 5 B DG 5 9 1_555 B DC 6 B DC 6 9 1_555 B DT 7 B DT 7 9 1_555 D PRO 9 D PRO 9 9 1_555 D SAR 10 D SAR 10 9 1_555 D MVA 11 D MVA 11 9 1_555 A DG 5 A DG 5 9 1_555 A DC 6 A DC 6 9 1_555 A DT 7 A DT 7 9 1_555 B DA 2 B DA 2 9 1_555 B DG 3 B DG 3 9 1_555 B DC 4 B DC 4 9 1_555 C PRO 9 C PRO 9 9 1_555 C SAR 10 C SAR 10 9 1_555 C MVA 11 C MVA 11 9 1_555 1 P 1