1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Chen, H.
Liu, X.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H11 N O2
117.146
D-VALINE
D-peptide linking
C6 H13 N O2
131.173
n
N-METHYLVALINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C16 H12 N2 O4
296.277
2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE
PHENOXAZINE
non-polymer
C3 H7 N O2
89.093
n
SARCOSINE
peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
R
C
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
N
C
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
Y
202
N
C
N
203
N
C
N
204
N
O
Y
205
N
C
N
206
N
N
Y
207
N
C
N
208
N
O
Y
209
N
C
Y
210
N
O
Y
211
N
C
Y
212
N
C
Y
213
N
C
Y
214
N
C
N
215
N
C
N
216
N
O
Y
217
N
N
Y
218
N
C
Y
219
N
C
Y
220
N
C
Y
221
N
C
N
222
N
C
N
223
N
C
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
N
N
250
S
C
N
251
N
C
N
252
N
O
N
253
R
C
N
254
N
O
N
255
N
C
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
Y
207
N
doub
Y
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
Y
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
Y
216
N
sing
Y
217
N
doub
N
218
N
sing
Y
219
N
sing
Y
220
N
sing
Y
221
N
doub
Y
222
N
sing
N
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
sing
N
228
N
sing
Y
229
N
sing
N
230
N
doub
N
231
N
sing
Y
232
N
doub
Y
233
N
sing
Y
234
N
sing
Y
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
258
457
10.1006/JMBI.1996.0262
8642603
DNA Bending and Unwinding Associated with Actinomycin D Antibiotics Bound to Partially Overlapping Sites on DNA.
1996
10.2210/pdb1fja/pdb
pdb_00001fja
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2426.617
DNA (5'-D(*AP*AP*GP*CP*GP*CP*TP*T)-3')
2
syn
polymer
1259.447
ACTINOMYCIN D
2
syn
polymer
DACTINOMYCIN
no
no
(DA)(DA)(DG)(DC)(DG)(DC)(DT)(DT)
AAGCGCTT
A,B
polydeoxyribonucleotide
no
yes
T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA)
TVPGVXTVPGV
C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-6.396
1
20
A
2
B
7
1.120
A_DA2:DT7_B
1
-8.975
0.348
-0.392
-0.156
13.995
1
19
A
3
B
6
-1.359
A_DG3:DC6_B
2
8.706
-1.015
0.375
-0.414
-11.323
1
19
A
4
B
5
1.874
A_DC4:DG5_B
3
15.149
0.786
0.516
-0.291
10.929
1
19
A
5
B
4
1.809
A_DG5:DC4_B
4
14.453
-0.784
0.533
-0.295
-14.029
1
19
A
6
B
3
-1.393
A_DC6:DG3_B
5
7.689
0.984
0.379
-0.397
8.762
1
20
A
7
B
2
1.232
A_DT7:DA2_B
6
-7.280
-0.360
-0.376
-0.154
2.647
21.552
A
A
2
3
44.021
B
B
7
6
2.874
14.517
0.145
1.228
AA_DA2DG3:DC6DT7_BB
1
-7.659
23.225
14.015
-2.704
-3.549
0.364
-24.757
A
A
4
5
-73.691
B
B
5
4
3.008
23.745
-0.027
0.521
AA_DC4DG5:DC4DG5_BB
2
0.247
0.766
-7.052
-7.070
-0.002
2.664
20.811
A
A
6
7
41.853
B
B
3
2
2.793
13.501
-0.104
1.219
AA_DC6DT7:DA2DG3_BB
3
7.087
-21.972
14.205
-2.413
3.327
atom_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_validate_polymer_linkage
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
Advisory
Atomic model
Data collection
Database references
Derived calculations
Other
1
0
1996-06-10
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
2
0
2023-11-15
_atom_site.auth_atom_id
_atom_site.label_atom_id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
CRYSTAL STRUCTURE OF ACTINOMYCIN Z3
CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2
CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC)
CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2
SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2
CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2
CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2
SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2
CRYSTAL STRUCTURE OF ACTINOMYCIN X2
Y
BNL
1995-12-15
REL
1890
STREPTOMYCES ANTIBIOTICUS
sample
ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE
ACTINOMYCIN FAMILY.
HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES)
Antibiotic
ACTINOMYCIN D CONSISTS OF TWO PENTAMER
RINGS LINKED BY THE CHROMOPHORE (PXZ)
Actinomycin D
Polypeptide
5
BRUNGER
refinement
X-PLOR
n
1
1
A
DA
2
n
2
DA
2
A
DG
3
n
3
DG
3
A
DC
4
n
4
DC
4
A
DG
5
n
5
DG
5
A
DC
6
n
6
DC
6
A
DT
7
n
7
DT
7
A
n
8
8
A
n
1
1
B
DA
2
n
2
DA
2
B
DG
3
n
3
DG
3
B
DC
4
n
4
DC
4
B
DG
5
n
5
DG
5
B
DC
6
n
6
DC
6
B
DT
7
n
7
DT
7
B
n
8
8
B
THR
1
n
1
THR
1
C
DVA
2
n
2
DVA
2
C
PRO
3
n
3
PRO
3
C
SAR
4
n
4
SAR
4
C
MVA
5
n
5
MVA
5
C
PXZ
6
n
6
PXZ
6
C
THR
7
n
7
THR
7
C
DVA
8
n
8
DVA
8
C
PRO
9
n
9
PRO
9
C
SAR
10
n
10
SAR
10
C
MVA
11
n
11
MVA
11
C
THR
1
n
1
THR
1
D
DVA
2
n
2
DVA
2
D
PRO
3
n
3
PRO
3
D
SAR
4
n
4
SAR
4
D
MVA
5
n
5
MVA
5
D
PXZ
6
n
6
PXZ
6
D
THR
7
n
7
THR
7
D
DVA
8
n
8
DVA
8
D
PRO
9
n
9
PRO
9
D
SAR
10
n
10
SAR
10
D
MVA
11
n
11
MVA
11
D
software_defined_assembly
PQS
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
P
DA
2
A
P
DA
2
1
Y
1
A
OP1
DA
2
A
OP1
DA
2
1
Y
1
A
OP2
DA
2
A
OP2
DA
2
1
Y
1
B
P
DA
2
B
P
DA
2
1
Y
1
B
OP1
DA
2
B
OP1
DA
2
1
Y
1
B
OP2
DA
2
B
OP2
DA
2
1
Y
2
A
P
DA
2
A
P
DA
2
1
Y
2
A
OP1
DA
2
A
OP1
DA
2
1
Y
2
A
OP2
DA
2
A
OP2
DA
2
1
Y
2
B
P
DA
2
B
P
DA
2
1
Y
2
B
OP1
DA
2
B
OP1
DA
2
1
Y
2
B
OP2
DA
2
B
OP2
DA
2
1
Y
3
A
P
DA
2
A
P
DA
2
1
Y
3
A
OP1
DA
2
A
OP1
DA
2
1
Y
3
A
OP2
DA
2
A
OP2
DA
2
1
Y
3
B
P
DA
2
B
P
DA
2
1
Y
3
B
OP1
DA
2
B
OP1
DA
2
1
Y
3
B
OP2
DA
2
B
OP2
DA
2
1
Y
4
A
P
DA
2
A
P
DA
2
1
Y
4
A
OP1
DA
2
A
OP1
DA
2
1
Y
4
A
OP2
DA
2
A
OP2
DA
2
1
Y
4
B
P
DA
2
B
P
DA
2
1
Y
4
B
OP1
DA
2
B
OP1
DA
2
1
Y
4
B
OP2
DA
2
B
OP2
DA
2
1
Y
5
A
P
DA
2
A
P
DA
2
1
Y
5
A
OP1
DA
2
A
OP1
DA
2
1
Y
5
A
OP2
DA
2
A
OP2
DA
2
1
Y
5
B
P
DA
2
B
P
DA
2
1
Y
5
B
OP1
DA
2
B
OP1
DA
2
1
Y
5
B
OP2
DA
2
B
OP2
DA
2
1
Y
1
A
DA
1
A
DA
1
1
Y
1
A
DT
8
A
DT
8
1
Y
1
B
DA
1
B
DA
1
1
Y
1
B
DT
8
B
DT
8
1
Y
2
A
DA
1
A
DA
1
1
Y
2
A
DT
8
A
DT
8
1
Y
2
B
DA
1
B
DA
1
1
Y
2
B
DT
8
B
DT
8
1
Y
3
A
DA
1
A
DA
1
1
Y
3
A
DT
8
A
DT
8
1
Y
3
B
DA
1
B
DA
1
1
Y
3
B
DT
8
B
DT
8
1
Y
4
A
DA
1
A
DA
1
1
Y
4
A
DT
8
A
DT
8
1
Y
4
B
DA
1
B
DA
1
1
Y
4
B
DT
8
B
DT
8
1
Y
5
A
DA
1
A
DA
1
1
Y
5
A
DT
8
A
DT
8
1
Y
5
B
DA
1
B
DA
1
1
Y
5
B
DT
8
B
DT
8
1
Y
1
3.45
0.50
113.80
117.25
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
1
-2.86
0.40
105.80
102.94
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
1
3.88
0.30
108.30
112.18
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
4.36
0.50
113.10
117.46
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
1
-2.89
0.40
106.40
103.51
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
1
4.73
0.60
106.00
110.73
A
A
A
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
1
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
4.04
0.50
113.10
117.14
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
1
-2.59
0.40
106.40
103.81
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
1
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
2.96
0.30
108.30
111.26
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
3.40
0.50
113.80
117.20
B
B
B
N7
C8
N9
DA
DA
DA
2
2
2
N
1
-2.91
0.40
105.80
102.89
B
B
B
C8
N9
C4
DA
DA
DA
2
2
2
N
1
3.88
0.30
108.30
112.18
B
B
B
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
4.34
0.50
113.10
117.44
B
B
B
N7
C8
N9
DG
DG
DG
3
3
3
N
1
-2.91
0.40
106.40
103.49
B
B
B
C8
N9
C4
DG
DG
DG
3
3
3
N
1
4.69
0.60
106.00
110.69
B
B
B
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
1
2.22
0.30
108.30
110.52
B
B
B
O4'
C1'
N1
DC
DC
DC
4
4
4
N
1
4.09
0.50
113.10
117.19
B
B
B
N7
C8
N9
DG
DG
DG
5
5
5
N
1
-2.64
0.40
106.40
103.76
B
B
B
C8
N9
C4
DG
DG
DG
5
5
5
N
1
1.94
0.30
108.30
110.24
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
3.08
0.30
108.30
111.38
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
2
3.47
0.50
113.80
117.27
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
2
4.85
0.30
108.30
113.15
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
4.17
0.50
113.10
117.27
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
2
-2.61
0.40
106.40
103.79
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
2
4.81
0.60
106.00
110.81
A
A
A
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
2
4.12
0.50
113.10
117.22
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
2
-2.66
0.40
106.40
103.74
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
2
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
3.34
0.30
108.30
111.64
B
B
B
O4'
C1'
N9
DA
DA
DA
2
2
2
N
2
3.64
0.50
113.80
117.44
B
B
B
N7
C8
N9
DA
DA
DA
2
2
2
N
2
4.77
0.30
108.30
113.07
B
B
B
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
4.15
0.50
113.10
117.25
B
B
B
N7
C8
N9
DG
DG
DG
3
3
3
N
2
-2.53
0.40
106.40
103.87
B
B
B
C8
N9
C4
DG
DG
DG
3
3
3
N
2
4.70
0.60
106.00
110.70
B
B
B
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
2
4.13
0.50
113.10
117.23
B
B
B
N7
C8
N9
DG
DG
DG
5
5
5
N
2
-2.73
0.40
106.40
103.67
B
B
B
C8
N9
C4
DG
DG
DG
5
5
5
N
2
2.65
0.30
108.30
110.95
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
2.77
0.30
108.30
111.07
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
3
3.57
0.50
113.80
117.37
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
3
5.60
0.30
108.30
113.90
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
3
4.54
0.50
113.10
117.64
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
3
-3.20
0.40
106.40
103.20
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
3
4.86
0.60
106.00
110.86
A
A
A
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
3
1.90
0.30
108.30
110.20
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
3
4.18
0.50
113.10
117.28
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
3
-2.66
0.40
106.40
103.74
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
3
1.82
0.30
108.30
110.12
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
3
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
2.74
0.30
108.30
111.04
B
B
B
O4'
C1'
N9
DA
DA
DA
2
2
2
N
3
3.51
0.50
113.80
117.31
B
B
B
N7
C8
N9
DA
DA
DA
2
2
2
N
3
5.49
0.30
108.30
113.79
B
B
B
O4'
C1'
N9
DG
DG
DG
3
3
3
N
3
4.58
0.50
113.10
117.68
B
B
B
N7
C8
N9
DG
DG
DG
3
3
3
N
3
-3.28
0.40
106.40
103.12
B
B
B
C8
N9
C4
DG
DG
DG
3
3
3
N
3
4.75
0.60
106.00
110.75
B
B
B
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
3
2.23
0.30
108.30
110.53
B
B
B
O4'
C1'
N1
DC
DC
DC
4
4
4
N
3
4.24
0.50
113.10
117.34
B
B
B
N7
C8
N9
DG
DG
DG
5
5
5
N
3
-2.85
0.40
106.40
103.55
B
B
B
C8
N9
C4
DG
DG
DG
5
5
5
N
3
1.83
0.30
108.30
110.13
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
3
2.91
0.30
108.30
111.21
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
3.44
0.50
113.80
117.24
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
4
-2.77
0.40
105.80
103.03
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
4
4.24
0.30
108.30
112.54
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
4
4.28
0.50
113.10
117.38
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
4
-2.74
0.40
106.40
103.66
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
4
4.80
0.60
106.00
110.80
A
A
A
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
4
2.22
0.30
108.30
110.52
A
A
A
O4'
C1'
N1
DC
DC
DC
4
4
4
N
4
4.32
0.50
113.10
117.42
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
4
-2.88
0.40
106.40
103.52
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
4
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
4
2.62
0.30
108.30
110.92
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
3.41
0.50
113.80
117.21
B
B
B
N7
C8
N9
DA
DA
DA
2
2
2
N
4
-2.65
0.40
105.80
103.15
B
B
B
C8
N9
C4
DA
DA
DA
2
2
2
N
4
4.17
0.30
108.30
112.47
B
B
B
O4'
C1'
N9
DG
DG
DG
3
3
3
N
4
4.34
0.50
113.10
117.44
B
B
B
N7
C8
N9
DG
DG
DG
3
3
3
N
4
-2.82
0.40
106.40
103.58
B
B
B
C8
N9
C4
DG
DG
DG
3
3
3
N
4
5.00
0.60
106.00
111.00
B
B
B
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
4
2.35
0.30
108.30
110.65
B
B
B
O4'
C1'
N1
DC
DC
DC
4
4
4
N
4
4.24
0.50
113.10
117.34
B
B
B
N7
C8
N9
DG
DG
DG
5
5
5
N
4
-2.83
0.40
106.40
103.57
B
B
B
C8
N9
C4
DG
DG
DG
5
5
5
N
4
2.10
0.30
108.30
110.40
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
4
2.79
0.30
108.30
111.09
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
3.24
0.50
113.80
117.04
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
5
-2.61
0.40
105.80
103.19
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
5
3.97
0.30
108.30
112.27
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
5
4.28
0.50
113.10
117.38
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
5
-2.94
0.40
106.40
103.46
A
A
A
C8
N9
C4
DG
DG
DG
3
3
3
N
5
4.95
0.60
106.00
110.95
A
A
A
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
5
4.42
0.50
113.10
117.52
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
5
-3.06
0.40
106.40
103.34
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
5
3.14
0.30
108.30
111.44
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
5
2.89
0.30
108.30
111.19
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
3.28
0.50
113.80
117.08
B
B
B
N7
C8
N9
DA
DA
DA
2
2
2
N
5
-2.60
0.40
105.80
103.20
B
B
B
C8
N9
C4
DA
DA
DA
2
2
2
N
5
4.02
0.30
108.30
112.32
B
B
B
O4'
C1'
N9
DG
DG
DG
3
3
3
N
5
4.28
0.50
113.10
117.38
B
B
B
N7
C8
N9
DG
DG
DG
3
3
3
N
5
-2.88
0.40
106.40
103.52
B
B
B
C8
N9
C4
DG
DG
DG
3
3
3
N
5
4.96
0.60
106.00
110.96
B
B
B
O4'
C4'
C3'
DC
DC
DC
4
4
4
N
5
4.37
0.50
113.10
117.47
B
B
B
N7
C8
N9
DG
DG
DG
5
5
5
N
5
-3.04
0.40
106.40
103.36
B
B
B
C8
N9
C4
DG
DG
DG
5
5
5
N
5
3.11
0.30
108.30
111.41
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
5
2.73
0.30
108.30
111.03
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
A
A
C4'
C3'
DC
DC
4
4
-0.064
0.010
1.521
1.457
N
1
B
B
C4'
C3'
DC
DC
4
4
-0.066
0.010
1.521
1.455
N
2
B
B
C4'
C3'
DC
DC
4
4
-0.060
0.010
1.521
1.461
N
3
A
A
C4'
C3'
DC
DC
4
4
-0.066
0.010
1.521
1.455
N
3
B
B
C4'
C3'
DC
DC
4
4
-0.067
0.010
1.521
1.454
N
4
A
A
C4'
C3'
DC
DC
4
4
-0.067
0.010
1.521
1.454
N
4
B
B
C4'
C3'
DC
DC
4
4
-0.064
0.010
1.521
1.457
N
5
A
A
C4'
C3'
DC
DC
4
4
-0.063
0.010
1.521
1.458
N
5
B
B
C4'
C3'
DC
DC
4
4
-0.063
0.010
1.521
1.458
N
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
NMR STUDY OF DEOXYRIBONUCLEIC ACID COMPLEXED WITH ACTINOMYCIN D
1
N
N
1
N
N
2
N
N
2
N
N
covale
1.313
both
C
THR
1
C
C
THR
1
1_555
C
DVA
2
C
N
DVA
2
1_555
covale
1.386
one
C
THR
1
C
OG1
THR
1
1_555
C
MVA
5
C
C
MVA
5
1_555
covale
1.307
one
C
THR
1
C
N
THR
1
1_555
C
PXZ
6
C
C0
PXZ
6
1_555
covale
1.325
both
C
DVA
2
C
C
DVA
2
1_555
C
PRO
3
C
N
PRO
3
1_555
covale
1.333
both
C
PRO
3
C
C
PRO
3
1_555
C
SAR
4
C
N
SAR
4
1_555
covale
1.337
both
C
SAR
4
C
C
SAR
4
1_555
C
MVA
5
C
N
MVA
5
1_555
covale
1.307
one
C
PXZ
6
C
C0'
PXZ
6
1_555
C
THR
7
C
N
THR
7
1_555
covale
1.314
both
C
THR
7
C
C
THR
7
1_555
C
DVA
8
C
N
DVA
8
1_555
covale
1.389
one
C
THR
7
C
OG1
THR
7
1_555
C
MVA
11
C
C
MVA
11
1_555
covale
1.323
both
C
DVA
8
C
C
DVA
8
1_555
C
PRO
9
C
N
PRO
9
1_555
covale
1.333
both
C
PRO
9
C
C
PRO
9
1_555
C
SAR
10
C
N
SAR
10
1_555
covale
1.328
both
C
SAR
10
C
C
SAR
10
1_555
C
MVA
11
C
N
MVA
11
1_555
covale
1.313
both
D
THR
1
D
C
THR
1
1_555
D
DVA
2
D
N
DVA
2
1_555
covale
1.385
one
D
THR
1
D
OG1
THR
1
1_555
D
MVA
5
D
C
MVA
5
1_555
covale
1.307
one
D
THR
1
D
N
THR
1
1_555
D
PXZ
6
D
C0
PXZ
6
1_555
covale
1.325
both
D
DVA
2
D
C
DVA
2
1_555
D
PRO
3
D
N
PRO
3
1_555
covale
1.332
both
D
PRO
3
D
C
PRO
3
1_555
D
SAR
4
D
N
SAR
4
1_555
covale
1.339
both
D
SAR
4
D
C
SAR
4
1_555
D
MVA
5
D
N
MVA
5
1_555
covale
1.305
one
D
PXZ
6
D
C0'
PXZ
6
1_555
D
THR
7
D
N
THR
7
1_555
covale
1.314
both
D
THR
7
D
C
THR
7
1_555
D
DVA
8
D
N
DVA
8
1_555
covale
1.387
one
D
THR
7
D
OG1
THR
7
1_555
D
MVA
11
D
C
MVA
11
1_555
covale
1.322
both
D
DVA
8
D
C
DVA
8
1_555
D
PRO
9
D
N
PRO
9
1_555
covale
1.334
both
D
PRO
9
D
C
PRO
9
1_555
D
SAR
10
D
N
SAR
10
1_555
covale
1.329
both
D
SAR
10
D
C
SAR
10
1_555
D
MVA
11
D
N
MVA
11
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
DT
7
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
DT
7
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
6
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
6
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
6
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N3
DC
4
1_555
B
DG
5
B
N1
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
4
A
N4
DC
4
1_555
B
DG
5
B
O6
DG
5
1_555
hydrog
WATSON-CRICK
A
DC
4
A
O2
DC
4
1_555
B
DG
5
B
N2
DG
5
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
4
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
4
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
4
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
3
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
3
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
3
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
2
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
2
B
N6
DA
2
1_555
DNA/ANTIBIOTIC
ACTINOMYCIN D, ACTINOMYCIN, ANTI CANCER, ANTITUMOR, ANTIBIOTIC, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX
C
DVA
2
C
DVA
2
1
C
PRO
3
C
PRO
3
1.29
C
PRO
3
C
PRO
3
1
C
SAR
4
C
SAR
4
0.04
C
DVA
8
C
DVA
8
1
C
PRO
9
C
PRO
9
1.38
C
PRO
9
C
PRO
9
1
C
SAR
10
C
SAR
10
0.42
D
DVA
2
D
DVA
2
1
D
PRO
3
D
PRO
3
1.24
D
PRO
3
D
PRO
3
1
D
SAR
4
D
SAR
4
0.04
D
DVA
8
D
DVA
8
1
D
PRO
9
D
PRO
9
1.43
D
PRO
9
D
PRO
9
1
D
SAR
10
D
SAR
10
0.17
C
DVA
2
C
DVA
2
2
C
PRO
3
C
PRO
3
1.39
C
PRO
3
C
PRO
3
2
C
SAR
4
C
SAR
4
-0.28
C
DVA
8
C
DVA
8
2
C
PRO
9
C
PRO
9
1.30
C
PRO
9
C
PRO
9
2
C
SAR
10
C
SAR
10
0.11
D
DVA
2
D
DVA
2
2
D
PRO
3
D
PRO
3
1.33
D
PRO
3
D
PRO
3
2
D
SAR
4
D
SAR
4
-0.20
D
DVA
8
D
DVA
8
2
D
PRO
9
D
PRO
9
1.22
D
PRO
9
D
PRO
9
2
D
SAR
10
D
SAR
10
0.10
C
DVA
2
C
DVA
2
3
C
PRO
3
C
PRO
3
0.69
C
PRO
3
C
PRO
3
3
C
SAR
4
C
SAR
4
-0.07
C
DVA
8
C
DVA
8
3
C
PRO
9
C
PRO
9
1.65
C
PRO
9
C
PRO
9
3
C
SAR
10
C
SAR
10
0.11
D
DVA
2
D
DVA
2
3
D
PRO
3
D
PRO
3
1.06
D
PRO
3
D
PRO
3
3
D
SAR
4
D
SAR
4
-0.01
D
DVA
8
D
DVA
8
3
D
PRO
9
D
PRO
9
1.46
D
PRO
9
D
PRO
9
3
D
SAR
10
D
SAR
10
0.22
C
DVA
2
C
DVA
2
4
C
PRO
3
C
PRO
3
0.85
C
PRO
3
C
PRO
3
4
C
SAR
4
C
SAR
4
0.02
C
DVA
8
C
DVA
8
4
C
PRO
9
C
PRO
9
0.75
C
PRO
9
C
PRO
9
4
C
SAR
10
C
SAR
10
0.29
D
DVA
2
D
DVA
2
4
D
PRO
3
D
PRO
3
0.53
D
PRO
3
D
PRO
3
4
D
SAR
4
D
SAR
4
-0.01
D
DVA
8
D
DVA
8
4
D
PRO
9
D
PRO
9
0.78
D
PRO
9
D
PRO
9
4
D
SAR
10
D
SAR
10
0.32
C
DVA
2
C
DVA
2
5
C
PRO
3
C
PRO
3
0.81
C
PRO
3
C
PRO
3
5
C
SAR
4
C
SAR
4
0.03
C
DVA
8
C
DVA
8
5
C
PRO
9
C
PRO
9
0.75
C
PRO
9
C
PRO
9
5
C
SAR
10
C
SAR
10
0.57
D
DVA
2
D
DVA
2
5
D
PRO
3
D
PRO
3
0.81
D
PRO
3
D
PRO
3
5
D
SAR
4
D
SAR
4
0.11
D
DVA
8
D
DVA
8
5
D
PRO
9
D
PRO
9
0.83
D
PRO
9
D
PRO
9
5
D
SAR
10
D
SAR
10
0.48
1FJA
PDB
1
1FJA
NOR00228
NOR
2
NOR00228
1
8
1FJA
1
8
1FJA
A
1
1
8
1
8
1FJA
1
8
1FJA
B
1
1
8
1
11
1FJA
1
11
NOR00228
C
2
1
11
1
11
1FJA
1
11
NOR00228
D
2
1
11
BINDING SITE FOR CHAIN C OF ACTINOMYCIN D
Software
9
BINDING SITE FOR CHAIN D OF ACTINOMYCIN D
Software
9
A
DA
2
A
DA
2
9
1_555
A
DG
3
A
DG
3
9
1_555
A
DC
4
A
DC
4
9
1_555
B
DG
5
B
DG
5
9
1_555
B
DC
6
B
DC
6
9
1_555
B
DT
7
B
DT
7
9
1_555
D
PRO
9
D
PRO
9
9
1_555
D
SAR
10
D
SAR
10
9
1_555
D
MVA
11
D
MVA
11
9
1_555
A
DG
5
A
DG
5
9
1_555
A
DC
6
A
DC
6
9
1_555
A
DT
7
A
DT
7
9
1_555
B
DA
2
B
DA
2
9
1_555
B
DG
3
B
DG
3
9
1_555
B
DC
4
B
DC
4
9
1_555
C
PRO
9
C
PRO
9
9
1_555
C
SAR
10
C
SAR
10
9
1_555
C
MVA
11
C
MVA
11
9
1_555
1
P 1