1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Boulard, Y. Cognet, J.A.H. Fazakerley, G.V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 268 331 347 10.1006/jmbi.1997.0975 9159474 Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. 1997 UK J.Mol.Biol. JMOBAK 0070 0022-2836 246 194 Solution Structure of an Oncogenic DNA Duplex, the K-Ras Gene and the Sequence Containing a Central C.A or A.G Mismatch as a Function of Ph: Nuclear Magnetic Resonance and Molecular Dynamics Studies 1995 UK J.Mol.Biol. JMOBAK 0070 0022-2836 246 209 Helical Parameters, Fluctuations, Alternative Hydrogen Bonding, and Bending in Oligonucleotides Containing a Mismatched Base-Pair by Noesy Distance Restrained and Distance Free Molecular Dynamics 1995 IX Eur.J.Biochem. EJBCAI 0262 0014-2956 228 279 Solution Structure of Two Mismatches A.A and T.T in the K-Ras Gene Context by Nuclear Magnetic Resonance and Molecular Dynamics 1995 10.2210/pdb1fkz/pdb pdb_00001fkz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3279.151 DNA (5'-D(*GP*CP*CP*AP*CP*CP*AP*GP*CP*TP*C)-3') 1 syn polymer 3390.209 DNA (5'-D(*GP*AP*GP*CP*TP*CP*GP*TP*GP*GP*C)-3') 1 syn polymer no no (DG)(DC)(DC)(DA)(DC)(DC)(DA)(DG)(DC)(DT)(DC) GCCACCAGCTC A polydeoxyribonucleotide no no (DG)(DA)(DG)(DC)(DT)(DC)(DG)(DT)(DG)(DG)(DC) GAGCTCGTGGC B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n -0.732 1 19 A 1 B 22 -3.876 A_DG1:DC22_B 1 -18.657 -0.457 0.546 -0.209 -11.267 1 19 A 2 B 21 -5.370 A_DC2:DG21_B 2 -17.310 0.692 0.698 -0.347 -13.550 1 19 A 3 B 20 -3.943 A_DC3:DG20_B 3 -12.747 0.949 0.693 -0.423 -3.541 1 20 A 4 B 19 -2.148 A_DA4:DT19_B 4 -9.542 0.064 0.851 -0.225 -7.955 1 19 A 5 B 18 -2.725 A_DC5:DG18_B 5 -8.772 1.033 0.880 -0.445 -1.068 A 6 B 17 -4.366 A_DC6:DC17_B 6 -14.473 0.914 1.667 -2.010 9.541 1 20 A 7 B 16 -0.662 A_DA7:DT16_B 7 -15.791 -0.587 0.768 -0.285 11.286 1 19 A 8 B 15 -4.717 A_DG8:DC15_B 8 -8.904 -0.926 0.866 -0.445 5.082 1 19 A 9 B 14 -4.329 A_DC9:DG14_B 9 -11.923 -0.227 0.758 -0.149 8.764 1 20 A 10 B 13 -6.409 A_DT10:DA13_B 10 -22.035 -0.086 0.228 -0.075 -1.439 1 19 A 11 B 12 -4.316 A_DC11:DG12_B 11 -21.401 0.532 0.459 -0.243 3.467 40.781 A A 1 2 -3.052 B B 22 21 3.419 -2.126 0.147 -0.994 AA_DG1DC2:DG21DC22_BB 1 1.248 -1.792 40.709 -1.179 -0.066 3.141 39.028 A A 2 3 -2.646 B B 21 20 3.094 -1.765 0.256 -0.906 AA_DC2DC3:DG20DG21_BB 2 2.828 -4.238 38.891 -1.153 -0.057 2.645 35.229 A A 3 4 -1.622 B B 20 19 2.621 -0.981 0.203 -0.809 AA_DC3DA4:DT19DG20_BB 3 0.677 -1.119 35.209 -1.220 -0.254 3.457 39.795 A A 4 5 -6.843 B B 19 18 3.384 -4.647 -0.221 -0.801 AA_DA4DC5:DG18DT19_BB 4 -0.987 1.453 39.522 -0.612 0.205 3.147 42.332 A A 5 6 -18.201 B B 18 17 3.096 -12.845 -0.231 -0.727 AA_DC5DC6:DC17DG18_BB 5 -9.545 13.526 39.319 0.297 -0.649 2.784 35.089 A A 6 7 -14.987 B B 17 16 2.718 -8.884 -0.393 -1.137 AA_DC6DA7:DT16DC17_BB 6 7.030 -11.861 33.265 -0.734 1.563 3.168 34.993 A A 7 8 -8.870 B B 16 15 3.026 -5.308 -0.088 -1.213 AA_DA7DG8:DC15DT16_BB 7 -3.009 5.027 34.474 -1.254 -0.287 3.482 40.284 A A 8 9 -6.257 B B 15 14 3.383 -4.300 -0.361 -1.023 AA_DG8DC9:DG14DC15_BB 8 -1.752 2.550 40.026 -0.974 0.315 3.029 37.307 A A 9 10 -8.434 B B 14 13 2.965 -5.376 -0.482 -0.817 AA_DC9DT10:DA13DG14_BB 9 1.500 -2.353 36.902 -0.622 0.936 3.288 38.283 A A 10 11 0.890 B B 13 12 3.319 0.583 0.072 -0.964 AA_DT10DC11:DG12DA13_BB 10 -3.123 4.767 38.156 -1.544 -0.506 database_2 pdbx_database_status pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Other 1 0 1997-03-12 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_software.name ENSEMBLE OF 2 STRUCTURES Y BNL 1996-10-09 REL 2 MORCAD BY LEBRET ALSO WAS USED. PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,CH refinement Amber G 1 n 1 DG 1 A C 2 n 2 DC 2 A C 3 n 3 DC 3 A A 4 n 4 DA 4 A C 5 n 5 DC 5 A C 6 n 6 DC 6 A A 7 n 7 DA 7 A G 8 n 8 DG 8 A C 9 n 9 DC 9 A T 10 n 10 DT 10 A C 11 n 11 DC 11 A G 12 n 1 DG 12 B A 13 n 2 DA 13 B G 14 n 3 DG 14 B C 15 n 4 DC 15 B T 16 n 5 DT 16 B C 17 n 6 DC 17 B G 18 n 7 DG 18 B T 19 n 8 DT 19 B G 20 n 9 DG 20 B G 21 n 10 DG 21 B C 22 n 11 DC 22 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DA 4 0.053 SIDE CHAIN 1 B DC 22 0.060 SIDE CHAIN 2 A DC 11 0.060 SIDE CHAIN 1 2.24 0.30 108.30 110.54 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 3.09 0.30 108.30 111.39 A A A O4' C1' N1 DC DC DC 2 2 2 N 1 2.30 0.30 108.30 110.60 A A A O4' C1' N1 DC DC DC 3 3 3 N 1 2.78 0.30 108.30 111.08 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 2.18 0.30 108.30 110.48 A A A O4' C1' N1 DC DC DC 6 6 6 N 1 1.99 0.30 108.30 110.29 A A A O4' C1' N9 DA DA DA 7 7 7 N 1 2.40 0.30 108.30 110.70 A A A O4' C1' N9 DG DG DG 8 8 8 N 1 2.42 0.30 108.30 110.72 A A A O4' C1' N1 DC DC DC 11 11 11 N 1 2.44 0.30 108.30 110.74 B B B O4' C1' N9 DA DA DA 13 13 13 N 1 2.82 0.30 108.30 111.12 B B B O4' C1' N9 DG DG DG 14 14 14 N 1 2.85 0.30 108.30 111.15 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 2.72 0.30 108.30 111.02 B B B O4' C1' N1 DT DT DT 16 16 16 N 1 4.01 0.30 108.30 112.31 B B B O4' C1' N1 DC DC DC 17 17 17 N 1 2.21 0.30 108.30 110.51 B B B O4' C1' N9 DG DG DG 18 18 18 N 1 1.95 0.30 108.30 110.25 B B B O4' C1' N1 DT DT DT 19 19 19 N 1 1.87 0.30 108.30 110.17 B B B O4' C1' N9 DG DG DG 21 21 21 N 1 2.02 0.30 108.30 110.32 B B B O4' C1' N1 DC DC DC 22 22 22 N 2 2.73 0.30 108.30 111.03 A A A O4' C1' N9 DG DG DG 1 1 1 N 2 2.40 0.30 108.30 110.70 A A A O4' C1' N1 DC DC DC 2 2 2 N 2 2.13 0.30 108.30 110.43 A A A O4' C1' N1 DC DC DC 3 3 3 N 2 2.04 0.30 108.30 110.34 A A A O4' C1' N9 DA DA DA 4 4 4 N 2 3.06 0.30 108.30 111.36 A A A O4' C1' N1 DC DC DC 5 5 5 N 2 2.19 0.30 108.30 110.49 A A A O4' C1' N1 DC DC DC 6 6 6 N 2 1.80 0.30 108.30 110.10 A A A O4' C1' N9 DA DA DA 7 7 7 N 2 2.68 0.30 108.30 110.98 A A A O4' C1' N9 DG DG DG 8 8 8 N 2 1.86 0.30 108.30 110.16 A A A O4' C1' N1 DC DC DC 9 9 9 N 2 1.87 0.30 108.30 110.17 A A A O4' C1' N1 DC DC DC 11 11 11 N 2 1.89 0.30 108.30 110.19 B B B O4' C1' N9 DG DG DG 12 12 12 N 2 2.27 0.30 108.30 110.57 B B B O4' C1' N9 DA DA DA 13 13 13 N 2 3.59 0.30 108.30 111.89 B B B O4' C1' N9 DG DG DG 14 14 14 N 2 2.98 0.30 108.30 111.28 B B B O4' C1' N1 DC DC DC 15 15 15 N 2 3.11 0.30 108.30 111.41 B B B O4' C1' N1 DT DT DT 16 16 16 N 2 3.76 0.30 108.30 112.06 B B B O4' C1' N1 DC DC DC 17 17 17 N 2 2.09 0.30 108.30 110.39 B B B O4' C1' N1 DT DT DT 19 19 19 N 2 1.86 0.30 108.30 110.16 B B B O4' C1' N9 DG DG DG 20 20 20 N 2 1.96 0.30 108.30 110.26 B B B O4' C1' N9 DG DG DG 21 21 21 N 2 1.86 0.30 108.30 110.16 B B B O4' C1' N1 DC DC DC 22 22 22 N refinement AMBER NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 22 B N3 DC 11 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 22 B O2 DC 11 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 22 B N4 DC 11 1_555 hydrog DC-DG PAIR A DC 2 A N4 DC 2 1_555 B DG 20 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 21 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 21 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 21 B N2 DG 10 1_555 hydrog DC-DT MISPAIR A DC 3 A N4 DC 3 1_555 B DT 19 B O4 DT 8 1_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 B DG 20 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 B DG 20 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 B DG 20 B N2 DG 9 1_555 hydrog TYPE_8_PAIR A DA 4 A N1 DA 4 1_555 B DG 18 B N1 DG 7 1_555 hydrog TYPE_8_PAIR A DA 4 A N6 DA 4 1_555 B DG 18 B O6 DG 7 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 19 B N3 DT 8 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 19 B O4 DT 8 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 18 B N1 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 18 B O6 DG 7 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 18 B N2 DG 7 1_555 hydrog DC-DT MISPAIR A DC 6 A N4 DC 6 1_555 B DT 16 B O4 DT 5 1_555 hydrog DC-DC MISPAIR A DC 6 A N3 DC 6 1_555 B DC 17 B N4 DC 6 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 16 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 16 B O4 DT 5 1_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 B DC 15 B N3 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 B DC 15 B O2 DC 4 1_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 B DC 15 B N4 DC 4 1_555 hydrog WATSON-CRICK A DC 9 A N3 DC 9 1_555 B DG 14 B N1 DG 3 1_555 hydrog WATSON-CRICK A DC 9 A N4 DC 9 1_555 B DG 14 B O6 DG 3 1_555 hydrog WATSON-CRICK A DC 9 A O2 DC 9 1_555 B DG 14 B N2 DG 3 1_555 hydrog WATSON-CRICK A DT 10 A N3 DT 10 1_555 B DA 13 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 10 A O4 DT 10 1_555 B DA 13 B N6 DA 2 1_555 hydrog WATSON-CRICK A DC 11 A N3 DC 11 1_555 B DG 12 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 11 A N4 DC 11 1_555 B DG 12 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 11 A O2 DC 11 1_555 B DG 12 B N2 DG 1 1_555 DNA DEOXYRIBONUCLEIC ACID, B-DNA, K-RAS, DNA 1FKZ PDB 1 1FKZ 1FKZ PDB 2 1FKZ 1 11 1FKZ 1 11 1FKZ A 1 1 11 12 22 1FKZ 12 22 1FKZ B 2 1 11 1 P 1