1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Boulard, Y.
Cognet, J.A.H.
Fazakerley, G.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
268
331
347
10.1006/jmbi.1997.0975
9159474
Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics.
1997
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
246
194
Solution Structure of an Oncogenic DNA Duplex, the K-Ras Gene and the Sequence Containing a Central C.A or A.G Mismatch as a Function of Ph: Nuclear Magnetic Resonance and Molecular Dynamics Studies
1995
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
246
209
Helical Parameters, Fluctuations, Alternative Hydrogen Bonding, and Bending in Oligonucleotides Containing a Mismatched Base-Pair by Noesy Distance Restrained and Distance Free Molecular Dynamics
1995
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
228
279
Solution Structure of Two Mismatches A.A and T.T in the K-Ras Gene Context by Nuclear Magnetic Resonance and Molecular Dynamics
1995
10.2210/pdb1fkz/pdb
pdb_00001fkz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3279.151
DNA (5'-D(*GP*CP*CP*AP*CP*CP*AP*GP*CP*TP*C)-3')
1
syn
polymer
3390.209
DNA (5'-D(*GP*AP*GP*CP*TP*CP*GP*TP*GP*GP*C)-3')
1
syn
polymer
no
no
(DG)(DC)(DC)(DA)(DC)(DC)(DA)(DG)(DC)(DT)(DC)
GCCACCAGCTC
A
polydeoxyribonucleotide
no
no
(DG)(DA)(DG)(DC)(DT)(DC)(DG)(DT)(DG)(DG)(DC)
GAGCTCGTGGC
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-0.732
1
19
A
1
B
22
-3.876
A_DG1:DC22_B
1
-18.657
-0.457
0.546
-0.209
-11.267
1
19
A
2
B
21
-5.370
A_DC2:DG21_B
2
-17.310
0.692
0.698
-0.347
-13.550
1
19
A
3
B
20
-3.943
A_DC3:DG20_B
3
-12.747
0.949
0.693
-0.423
-3.541
1
20
A
4
B
19
-2.148
A_DA4:DT19_B
4
-9.542
0.064
0.851
-0.225
-7.955
1
19
A
5
B
18
-2.725
A_DC5:DG18_B
5
-8.772
1.033
0.880
-0.445
-1.068
A
6
B
17
-4.366
A_DC6:DC17_B
6
-14.473
0.914
1.667
-2.010
9.541
1
20
A
7
B
16
-0.662
A_DA7:DT16_B
7
-15.791
-0.587
0.768
-0.285
11.286
1
19
A
8
B
15
-4.717
A_DG8:DC15_B
8
-8.904
-0.926
0.866
-0.445
5.082
1
19
A
9
B
14
-4.329
A_DC9:DG14_B
9
-11.923
-0.227
0.758
-0.149
8.764
1
20
A
10
B
13
-6.409
A_DT10:DA13_B
10
-22.035
-0.086
0.228
-0.075
-1.439
1
19
A
11
B
12
-4.316
A_DC11:DG12_B
11
-21.401
0.532
0.459
-0.243
3.467
40.781
A
A
1
2
-3.052
B
B
22
21
3.419
-2.126
0.147
-0.994
AA_DG1DC2:DG21DC22_BB
1
1.248
-1.792
40.709
-1.179
-0.066
3.141
39.028
A
A
2
3
-2.646
B
B
21
20
3.094
-1.765
0.256
-0.906
AA_DC2DC3:DG20DG21_BB
2
2.828
-4.238
38.891
-1.153
-0.057
2.645
35.229
A
A
3
4
-1.622
B
B
20
19
2.621
-0.981
0.203
-0.809
AA_DC3DA4:DT19DG20_BB
3
0.677
-1.119
35.209
-1.220
-0.254
3.457
39.795
A
A
4
5
-6.843
B
B
19
18
3.384
-4.647
-0.221
-0.801
AA_DA4DC5:DG18DT19_BB
4
-0.987
1.453
39.522
-0.612
0.205
3.147
42.332
A
A
5
6
-18.201
B
B
18
17
3.096
-12.845
-0.231
-0.727
AA_DC5DC6:DC17DG18_BB
5
-9.545
13.526
39.319
0.297
-0.649
2.784
35.089
A
A
6
7
-14.987
B
B
17
16
2.718
-8.884
-0.393
-1.137
AA_DC6DA7:DT16DC17_BB
6
7.030
-11.861
33.265
-0.734
1.563
3.168
34.993
A
A
7
8
-8.870
B
B
16
15
3.026
-5.308
-0.088
-1.213
AA_DA7DG8:DC15DT16_BB
7
-3.009
5.027
34.474
-1.254
-0.287
3.482
40.284
A
A
8
9
-6.257
B
B
15
14
3.383
-4.300
-0.361
-1.023
AA_DG8DC9:DG14DC15_BB
8
-1.752
2.550
40.026
-0.974
0.315
3.029
37.307
A
A
9
10
-8.434
B
B
14
13
2.965
-5.376
-0.482
-0.817
AA_DC9DT10:DA13DG14_BB
9
1.500
-2.353
36.902
-0.622
0.936
3.288
38.283
A
A
10
11
0.890
B
B
13
12
3.319
0.583
0.072
-0.964
AA_DT10DC11:DG12DA13_BB
10
-3.123
4.767
38.156
-1.544
-0.506
database_2
pdbx_database_status
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-03-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_nmr_software.name
ENSEMBLE OF 2 STRUCTURES
Y
BNL
1996-10-09
REL
2
MORCAD BY LEBRET ALSO WAS USED.
PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,CH
refinement
Amber
G
1
n
1
DG
1
A
C
2
n
2
DC
2
A
C
3
n
3
DC
3
A
A
4
n
4
DA
4
A
C
5
n
5
DC
5
A
C
6
n
6
DC
6
A
A
7
n
7
DA
7
A
G
8
n
8
DG
8
A
C
9
n
9
DC
9
A
T
10
n
10
DT
10
A
C
11
n
11
DC
11
A
G
12
n
1
DG
12
B
A
13
n
2
DA
13
B
G
14
n
3
DG
14
B
C
15
n
4
DC
15
B
T
16
n
5
DT
16
B
C
17
n
6
DC
17
B
G
18
n
7
DG
18
B
T
19
n
8
DT
19
B
G
20
n
9
DG
20
B
G
21
n
10
DG
21
B
C
22
n
11
DC
22
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DA
4
0.053
SIDE CHAIN
1
B
DC
22
0.060
SIDE CHAIN
2
A
DC
11
0.060
SIDE CHAIN
1
2.24
0.30
108.30
110.54
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
1
2.30
0.30
108.30
110.60
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
1
2.18
0.30
108.30
110.48
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
1.99
0.30
108.30
110.29
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
1
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
2.44
0.30
108.30
110.74
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
1
2.82
0.30
108.30
111.12
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
2.85
0.30
108.30
111.15
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
2.72
0.30
108.30
111.02
B
B
B
O4'
C1'
N1
DT
DT
DT
16
16
16
N
1
4.01
0.30
108.30
112.31
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
1
2.21
0.30
108.30
110.51
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
1.95
0.30
108.30
110.25
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
1
1.87
0.30
108.30
110.17
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
1
2.02
0.30
108.30
110.32
B
B
B
O4'
C1'
N1
DC
DC
DC
22
22
22
N
2
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
2
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N1
DC
DC
DC
2
2
2
N
2
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N1
DC
DC
DC
3
3
3
N
2
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
2
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N1
DC
DC
DC
5
5
5
N
2
2.19
0.30
108.30
110.49
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
2
1.80
0.30
108.30
110.10
A
A
A
O4'
C1'
N9
DA
DA
DA
7
7
7
N
2
2.68
0.30
108.30
110.98
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
2
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
2
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
2
1.89
0.30
108.30
110.19
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
2
2.27
0.30
108.30
110.57
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
2
3.59
0.30
108.30
111.89
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
2
2.98
0.30
108.30
111.28
B
B
B
O4'
C1'
N1
DC
DC
DC
15
15
15
N
2
3.11
0.30
108.30
111.41
B
B
B
O4'
C1'
N1
DT
DT
DT
16
16
16
N
2
3.76
0.30
108.30
112.06
B
B
B
O4'
C1'
N1
DC
DC
DC
17
17
17
N
2
2.09
0.30
108.30
110.39
B
B
B
O4'
C1'
N1
DT
DT
DT
19
19
19
N
2
1.86
0.30
108.30
110.16
B
B
B
O4'
C1'
N9
DG
DG
DG
20
20
20
N
2
1.96
0.30
108.30
110.26
B
B
B
O4'
C1'
N9
DG
DG
DG
21
21
21
N
2
1.86
0.30
108.30
110.16
B
B
B
O4'
C1'
N1
DC
DC
DC
22
22
22
N
refinement
AMBER
NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
22
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
22
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
22
B
N4
DC
11
1_555
hydrog
DC-DG PAIR
A
DC
2
A
N4
DC
2
1_555
B
DG
20
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
B
DG
21
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
B
DG
21
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
B
DG
21
B
N2
DG
10
1_555
hydrog
DC-DT MISPAIR
A
DC
3
A
N4
DC
3
1_555
B
DT
19
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
20
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
20
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
20
B
N2
DG
9
1_555
hydrog
TYPE_8_PAIR
A
DA
4
A
N1
DA
4
1_555
B
DG
18
B
N1
DG
7
1_555
hydrog
TYPE_8_PAIR
A
DA
4
A
N6
DA
4
1_555
B
DG
18
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
19
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
19
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
18
B
N1
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
18
B
O6
DG
7
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
18
B
N2
DG
7
1_555
hydrog
DC-DT MISPAIR
A
DC
6
A
N4
DC
6
1_555
B
DT
16
B
O4
DT
5
1_555
hydrog
DC-DC MISPAIR
A
DC
6
A
N3
DC
6
1_555
B
DC
17
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N1
DA
7
1_555
B
DT
16
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
7
A
N6
DA
7
1_555
B
DT
16
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
B
DC
15
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
B
DC
15
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
B
DC
15
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
14
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
14
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
14
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DT
10
A
N3
DT
10
1_555
B
DA
13
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
10
A
O4
DT
10
1_555
B
DA
13
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N3
DC
11
1_555
B
DG
12
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
11
A
N4
DC
11
1_555
B
DG
12
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
11
A
O2
DC
11
1_555
B
DG
12
B
N2
DG
1
1_555
DNA
DEOXYRIBONUCLEIC ACID, B-DNA, K-RAS, DNA
1FKZ
PDB
1
1FKZ
1FKZ
PDB
2
1FKZ
1
11
1FKZ
1
11
1FKZ
A
1
1
11
12
22
1FKZ
12
22
1FKZ
B
2
1
11
1
P 1