0.011939 0.006893 0.000000 0.000000 0.013786 0.000000 0.000000 0.000000 0.004704 0.00000 0.00000 0.00000 Ni, C.-Z. Welsh, K. Leo, E. Chiou, C.-K. Wu, H. Reed, J.C. Ely, K.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 83.760 83.760 212.570 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 S C N 163 N C N 164 N C N 165 N C N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N C N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 S C N 229 N C N 230 N O N 231 N C N 232 N C N 233 N S N 234 N C N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C N 258 N O N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 S C N 272 N C N 273 N O N 274 N C N 275 N C N 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N O N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 R C N 306 N O N 307 N C N 308 N O N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N N Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N C Y 354 N C Y 355 N C N 356 N O N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N N N 370 S C N 371 N C N 372 N O N 373 N C N 374 N C N 375 N C N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N doub N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing Y 246 N doub Y 247 N sing Y 248 N sing N 249 N sing Y 250 N doub N 251 N sing Y 252 N doub N 253 N sing Y 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N doub N 339 N sing N 340 N sing N 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 10395 10399 10.1073/pnas.97.19.10395 10984535 Molecular basis for CD40 signaling mediated by TRAF3. 2000 10.2210/pdb1fll/pdb pdb_00001fll 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 108.0 1 IMAGE PLATE 1999-05-27 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.98 1.0 BL9-1 SSRL 0.98 SYNCHROTRON SSRL BEAMLINE BL9-1 25885.521 TNF RECEPTOR ASSOCIATED FACTOR 3 TRAF DOMAIN 2 man polymer 2195.341 B-CELL SURFACE ANTIGEN CD40 CD40 (246-266) PEPTIDE N246K, C258S 2 syn polymer no no RQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIW KIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMD QGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPDP RQNWEEADSMKSSVESLQNRVTELESVDKSAGQVARNTGLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIW KIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMD QGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDTSDLPDP A,B polypeptide(L) no no KTAAPVQETLHGSQPVTQEDG KTAAPVQETLHGSQPVTQEDG X,Y polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli PLASMID PET21B 1 3.83 67.87 VAPOR DIFFUSION, HANGING DROP 7.5 METHANOL, SODIUM CHLORIDE, TRIS BUFFER, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 database_2 struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Data collection 1 0 2000-10-18 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-03 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2000-08-14 REL REL THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE OCCURS NATURALLY IN HUMANS (HOMO SAPIENS) sample n 1 277 A n 2 278 A n 3 279 A n 4 280 A n 5 281 A n 6 282 A n 7 283 A n 8 284 A n 9 285 A n 10 286 A n 11 287 A n 12 288 A n 13 289 A n 14 290 A n 15 291 A n 16 292 A n 17 293 A n 18 294 A n 19 295 A n 20 296 A n 21 297 A n 22 298 A n 23 299 A LEU 300 n 24 LEU 300 A GLU 301 n 25 GLU 301 A SER 302 n 26 SER 302 A VAL 303 n 27 VAL 303 A ASP 304 n 28 ASP 304 A LYS 305 n 29 LYS 305 A SER 306 n 30 SER 306 A ALA 307 n 31 ALA 307 A GLY 308 n 32 GLY 308 A GLN 309 n 33 GLN 309 A VAL 310 n 34 VAL 310 A ALA 311 n 35 ALA 311 A ARG 312 n 36 ARG 312 A ASN 313 n 37 ASN 313 A THR 314 n 38 THR 314 A GLY 315 n 39 GLY 315 A LEU 316 n 40 LEU 316 A LEU 317 n 41 LEU 317 A GLU 318 n 42 GLU 318 A SER 319 n 43 SER 319 A GLN 320 n 44 GLN 320 A LEU 321 n 45 LEU 321 A SER 322 n 46 SER 322 A ARG 323 n 47 ARG 323 A HIS 324 n 48 HIS 324 A ASP 325 n 49 ASP 325 A GLN 326 n 50 GLN 326 A MET 327 n 51 MET 327 A LEU 328 n 52 LEU 328 A SER 329 n 53 SER 329 A VAL 330 n 54 VAL 330 A HIS 331 n 55 HIS 331 A ASP 332 n 56 ASP 332 A ILE 333 n 57 ILE 333 A ARG 334 n 58 ARG 334 A LEU 335 n 59 LEU 335 A ALA 336 n 60 ALA 336 A ASP 337 n 61 ASP 337 A MET 338 n 62 MET 338 A ASP 339 n 63 ASP 339 A LEU 340 n 64 LEU 340 A ARG 341 n 65 ARG 341 A PHE 342 n 66 PHE 342 A GLN 343 n 67 GLN 343 A VAL 344 n 68 VAL 344 A LEU 345 n 69 LEU 345 A GLU 346 n 70 GLU 346 A THR 347 n 71 THR 347 A ALA 348 n 72 ALA 348 A SER 349 n 73 SER 349 A TYR 350 n 74 TYR 350 A ASN 351 n 75 ASN 351 A GLY 352 n 76 GLY 352 A VAL 353 n 77 VAL 353 A LEU 354 n 78 LEU 354 A ILE 355 n 79 ILE 355 A TRP 356 n 80 TRP 356 A LYS 357 n 81 LYS 357 A ILE 358 n 82 ILE 358 A ARG 359 n 83 ARG 359 A ASP 360 n 84 ASP 360 A TYR 361 n 85 TYR 361 A LYS 362 n 86 LYS 362 A ARG 363 n 87 ARG 363 A ARG 364 n 88 ARG 364 A LYS 365 n 89 LYS 365 A GLN 366 n 90 GLN 366 A GLU 367 n 91 GLU 367 A ALA 368 n 92 ALA 368 A VAL 369 n 93 VAL 369 A MET 370 n 94 MET 370 A GLY 371 n 95 GLY 371 A LYS 372 n 96 LYS 372 A THR 373 n 97 THR 373 A LEU 374 n 98 LEU 374 A SER 375 n 99 SER 375 A LEU 376 n 100 LEU 376 A TYR 377 n 101 TYR 377 A SER 378 n 102 SER 378 A GLN 379 n 103 GLN 379 A PRO 380 n 104 PRO 380 A PHE 381 n 105 PHE 381 A TYR 382 n 106 TYR 382 A THR 383 n 107 THR 383 A GLY 384 n 108 GLY 384 A TYR 385 n 109 TYR 385 A PHE 386 n 110 PHE 386 A GLY 387 n 111 GLY 387 A TYR 388 n 112 TYR 388 A LYS 389 n 113 LYS 389 A MET 390 n 114 MET 390 A CYS 391 n 115 CYS 391 A ALA 392 n 116 ALA 392 A ARG 393 n 117 ARG 393 A VAL 394 n 118 VAL 394 A TYR 395 n 119 TYR 395 A LEU 396 n 120 LEU 396 A ASN 397 n 121 ASN 397 A GLY 398 n 122 GLY 398 A ASP 399 n 123 ASP 399 A GLY 400 n 124 GLY 400 A MET 401 n 125 MET 401 A GLY 402 n 126 GLY 402 A LYS 403 n 127 LYS 403 A GLY 404 n 128 GLY 404 A THR 405 n 129 THR 405 A HIS 406 n 130 HIS 406 A LEU 407 n 131 LEU 407 A SER 408 n 132 SER 408 A LEU 409 n 133 LEU 409 A PHE 410 n 134 PHE 410 A PHE 411 n 135 PHE 411 A VAL 412 n 136 VAL 412 A ILE 413 n 137 ILE 413 A MET 414 n 138 MET 414 A ARG 415 n 139 ARG 415 A GLY 416 n 140 GLY 416 A GLU 417 n 141 GLU 417 A TYR 418 n 142 TYR 418 A ASP 419 n 143 ASP 419 A ALA 420 n 144 ALA 420 A LEU 421 n 145 LEU 421 A LEU 422 n 146 LEU 422 A PRO 423 n 147 PRO 423 A TRP 424 n 148 TRP 424 A PRO 425 n 149 PRO 425 A PHE 426 n 150 PHE 426 A LYS 427 n 151 LYS 427 A GLN 428 n 152 GLN 428 A LYS 429 n 153 LYS 429 A VAL 430 n 154 VAL 430 A THR 431 n 155 THR 431 A LEU 432 n 156 LEU 432 A MET 433 n 157 MET 433 A LEU 434 n 158 LEU 434 A MET 435 n 159 MET 435 A ASP 436 n 160 ASP 436 A GLN 437 n 161 GLN 437 A GLY 438 n 162 GLY 438 A SER 439 n 163 SER 439 A SER 440 n 164 SER 440 A ARG 441 n 165 ARG 441 A ARG 442 n 166 ARG 442 A HIS 443 n 167 HIS 443 A LEU 444 n 168 LEU 444 A GLY 445 n 169 GLY 445 A ASP 446 n 170 ASP 446 A ALA 447 n 171 ALA 447 A PHE 448 n 172 PHE 448 A LYS 449 n 173 LYS 449 A PRO 450 n 174 PRO 450 A ASP 451 n 175 ASP 451 A PRO 452 n 176 PRO 452 A ASN 453 n 177 ASN 453 A SER 454 n 178 SER 454 A SER 455 n 179 SER 455 A SER 456 n 180 SER 456 A PHE 457 n 181 PHE 457 A LYS 458 n 182 LYS 458 A LYS 459 n 183 LYS 459 A PRO 460 n 184 PRO 460 A THR 461 n 185 THR 461 A GLY 462 n 186 GLY 462 A GLU 463 n 187 GLU 463 A MET 464 n 188 MET 464 A ASN 465 n 189 ASN 465 A ILE 466 n 190 ILE 466 A ALA 467 n 191 ALA 467 A SER 468 n 192 SER 468 A GLY 469 n 193 GLY 469 A CYS 470 n 194 CYS 470 A PRO 471 n 195 PRO 471 A VAL 472 n 196 VAL 472 A PHE 473 n 197 PHE 473 A VAL 474 n 198 VAL 474 A ALA 475 n 199 ALA 475 A GLN 476 n 200 GLN 476 A THR 477 n 201 THR 477 A VAL 478 n 202 VAL 478 A LEU 479 n 203 LEU 479 A GLU 480 n 204 GLU 480 A ASN 481 n 205 ASN 481 A GLY 482 n 206 GLY 482 A THR 483 n 207 THR 483 A TYR 484 n 208 TYR 484 A ILE 485 n 209 ILE 485 A LYS 486 n 210 LYS 486 A ASP 487 n 211 ASP 487 A ASP 488 n 212 ASP 488 A THR 489 n 213 THR 489 A ILE 490 n 214 ILE 490 A PHE 491 n 215 PHE 491 A ILE 492 n 216 ILE 492 A LYS 493 n 217 LYS 493 A VAL 494 n 218 VAL 494 A ILE 495 n 219 ILE 495 A VAL 496 n 220 VAL 496 A ASP 497 n 221 ASP 497 A THR 498 n 222 THR 498 A SER 499 n 223 SER 499 A ASP 500 n 224 ASP 500 A LEU 501 n 225 LEU 501 A PRO 502 n 226 PRO 502 A ASP 503 n 227 ASP 503 A PRO 504 n 228 PRO 504 A LYS 246 n 1 LYS 246 X THR 247 n 2 THR 247 X ALA 248 n 3 ALA 248 X ALA 249 n 4 ALA 249 X PRO 250 n 5 PRO 250 X VAL 251 n 6 VAL 251 X GLN 252 n 7 GLN 252 X GLU 253 n 8 GLU 253 X THR 254 n 9 THR 254 X LEU 255 n 10 LEU 255 X HIS 256 n 11 HIS 256 X GLY 257 n 12 GLY 257 X SER 258 n 13 SER 258 X GLN 259 n 14 GLN 259 X PRO 260 n 15 PRO 260 X VAL 261 n 16 VAL 261 X THR 262 n 17 THR 262 X GLN 263 n 18 GLN 263 X GLU 264 n 19 GLU 264 X ASP 265 n 20 ASP 265 X GLY 266 n 21 GLY 266 X n 1 277 B n 2 278 B n 3 279 B n 4 280 B n 5 281 B n 6 282 B n 7 283 B n 8 284 B n 9 285 B n 10 286 B n 11 287 B n 12 288 B n 13 289 B n 14 290 B n 15 291 B n 16 292 B n 17 293 B n 18 294 B n 19 295 B n 20 296 B n 21 297 B n 22 298 B n 23 299 B LEU 300 n 24 LEU 300 B GLU 301 n 25 GLU 301 B SER 302 n 26 SER 302 B VAL 303 n 27 VAL 303 B ASP 304 n 28 ASP 304 B LYS 305 n 29 LYS 305 B SER 306 n 30 SER 306 B ALA 307 n 31 ALA 307 B GLY 308 n 32 GLY 308 B GLN 309 n 33 GLN 309 B VAL 310 n 34 VAL 310 B ALA 311 n 35 ALA 311 B ARG 312 n 36 ARG 312 B ASN 313 n 37 ASN 313 B THR 314 n 38 THR 314 B GLY 315 n 39 GLY 315 B LEU 316 n 40 LEU 316 B LEU 317 n 41 LEU 317 B GLU 318 n 42 GLU 318 B SER 319 n 43 SER 319 B GLN 320 n 44 GLN 320 B LEU 321 n 45 LEU 321 B SER 322 n 46 SER 322 B ARG 323 n 47 ARG 323 B HIS 324 n 48 HIS 324 B ASP 325 n 49 ASP 325 B GLN 326 n 50 GLN 326 B MET 327 n 51 MET 327 B LEU 328 n 52 LEU 328 B SER 329 n 53 SER 329 B VAL 330 n 54 VAL 330 B HIS 331 n 55 HIS 331 B ASP 332 n 56 ASP 332 B ILE 333 n 57 ILE 333 B ARG 334 n 58 ARG 334 B LEU 335 n 59 LEU 335 B ALA 336 n 60 ALA 336 B ASP 337 n 61 ASP 337 B MET 338 n 62 MET 338 B ASP 339 n 63 ASP 339 B LEU 340 n 64 LEU 340 B ARG 341 n 65 ARG 341 B PHE 342 n 66 PHE 342 B GLN 343 n 67 GLN 343 B VAL 344 n 68 VAL 344 B LEU 345 n 69 LEU 345 B GLU 346 n 70 GLU 346 B THR 347 n 71 THR 347 B ALA 348 n 72 ALA 348 B SER 349 n 73 SER 349 B TYR 350 n 74 TYR 350 B ASN 351 n 75 ASN 351 B GLY 352 n 76 GLY 352 B VAL 353 n 77 VAL 353 B LEU 354 n 78 LEU 354 B ILE 355 n 79 ILE 355 B TRP 356 n 80 TRP 356 B LYS 357 n 81 LYS 357 B ILE 358 n 82 ILE 358 B ARG 359 n 83 ARG 359 B ASP 360 n 84 ASP 360 B TYR 361 n 85 TYR 361 B LYS 362 n 86 LYS 362 B ARG 363 n 87 ARG 363 B ARG 364 n 88 ARG 364 B LYS 365 n 89 LYS 365 B GLN 366 n 90 GLN 366 B GLU 367 n 91 GLU 367 B ALA 368 n 92 ALA 368 B VAL 369 n 93 VAL 369 B MET 370 n 94 MET 370 B GLY 371 n 95 GLY 371 B LYS 372 n 96 LYS 372 B THR 373 n 97 THR 373 B LEU 374 n 98 LEU 374 B SER 375 n 99 SER 375 B LEU 376 n 100 LEU 376 B TYR 377 n 101 TYR 377 B SER 378 n 102 SER 378 B GLN 379 n 103 GLN 379 B PRO 380 n 104 PRO 380 B PHE 381 n 105 PHE 381 B TYR 382 n 106 TYR 382 B THR 383 n 107 THR 383 B GLY 384 n 108 GLY 384 B TYR 385 n 109 TYR 385 B PHE 386 n 110 PHE 386 B GLY 387 n 111 GLY 387 B TYR 388 n 112 TYR 388 B LYS 389 n 113 LYS 389 B MET 390 n 114 MET 390 B CYS 391 n 115 CYS 391 B ALA 392 n 116 ALA 392 B ARG 393 n 117 ARG 393 B VAL 394 n 118 VAL 394 B TYR 395 n 119 TYR 395 B LEU 396 n 120 LEU 396 B ASN 397 n 121 ASN 397 B GLY 398 n 122 GLY 398 B ASP 399 n 123 ASP 399 B GLY 400 n 124 GLY 400 B MET 401 n 125 MET 401 B GLY 402 n 126 GLY 402 B LYS 403 n 127 LYS 403 B GLY 404 n 128 GLY 404 B THR 405 n 129 THR 405 B HIS 406 n 130 HIS 406 B LEU 407 n 131 LEU 407 B SER 408 n 132 SER 408 B LEU 409 n 133 LEU 409 B PHE 410 n 134 PHE 410 B PHE 411 n 135 PHE 411 B VAL 412 n 136 VAL 412 B ILE 413 n 137 ILE 413 B MET 414 n 138 MET 414 B ARG 415 n 139 ARG 415 B GLY 416 n 140 GLY 416 B GLU 417 n 141 GLU 417 B TYR 418 n 142 TYR 418 B ASP 419 n 143 ASP 419 B ALA 420 n 144 ALA 420 B LEU 421 n 145 LEU 421 B LEU 422 n 146 LEU 422 B PRO 423 n 147 PRO 423 B TRP 424 n 148 TRP 424 B PRO 425 n 149 PRO 425 B PHE 426 n 150 PHE 426 B LYS 427 n 151 LYS 427 B GLN 428 n 152 GLN 428 B LYS 429 n 153 LYS 429 B VAL 430 n 154 VAL 430 B THR 431 n 155 THR 431 B LEU 432 n 156 LEU 432 B MET 433 n 157 MET 433 B LEU 434 n 158 LEU 434 B MET 435 n 159 MET 435 B ASP 436 n 160 ASP 436 B GLN 437 n 161 GLN 437 B GLY 438 n 162 GLY 438 B SER 439 n 163 SER 439 B SER 440 n 164 SER 440 B ARG 441 n 165 ARG 441 B ARG 442 n 166 ARG 442 B HIS 443 n 167 HIS 443 B LEU 444 n 168 LEU 444 B GLY 445 n 169 GLY 445 B ASP 446 n 170 ASP 446 B ALA 447 n 171 ALA 447 B PHE 448 n 172 PHE 448 B LYS 449 n 173 LYS 449 B PRO 450 n 174 PRO 450 B ASP 451 n 175 ASP 451 B PRO 452 n 176 PRO 452 B ASN 453 n 177 ASN 453 B SER 454 n 178 SER 454 B SER 455 n 179 SER 455 B SER 456 n 180 SER 456 B PHE 457 n 181 PHE 457 B LYS 458 n 182 LYS 458 B LYS 459 n 183 LYS 459 B PRO 460 n 184 PRO 460 B THR 461 n 185 THR 461 B GLY 462 n 186 GLY 462 B GLU 463 n 187 GLU 463 B MET 464 n 188 MET 464 B ASN 465 n 189 ASN 465 B ILE 466 n 190 ILE 466 B ALA 467 n 191 ALA 467 B SER 468 n 192 SER 468 B GLY 469 n 193 GLY 469 B CYS 470 n 194 CYS 470 B PRO 471 n 195 PRO 471 B VAL 472 n 196 VAL 472 B PHE 473 n 197 PHE 473 B VAL 474 n 198 VAL 474 B ALA 475 n 199 ALA 475 B GLN 476 n 200 GLN 476 B THR 477 n 201 THR 477 B VAL 478 n 202 VAL 478 B LEU 479 n 203 LEU 479 B GLU 480 n 204 GLU 480 B ASN 481 n 205 ASN 481 B GLY 482 n 206 GLY 482 B THR 483 n 207 THR 483 B TYR 484 n 208 TYR 484 B ILE 485 n 209 ILE 485 B LYS 486 n 210 LYS 486 B ASP 487 n 211 ASP 487 B ASP 488 n 212 ASP 488 B THR 489 n 213 THR 489 B ILE 490 n 214 ILE 490 B PHE 491 n 215 PHE 491 B ILE 492 n 216 ILE 492 B LYS 493 n 217 LYS 493 B VAL 494 n 218 VAL 494 B ILE 495 n 219 ILE 495 B VAL 496 n 220 VAL 496 B ASP 497 n 221 ASP 497 B THR 498 n 222 THR 498 B SER 499 n 223 SER 499 B ASP 500 n 224 ASP 500 B LEU 501 n 225 LEU 501 B PRO 502 n 226 PRO 502 B ASP 503 n 227 ASP 503 B PRO 504 n 228 PRO 504 B LYS 246 n 1 LYS 246 Y THR 247 n 2 THR 247 Y ALA 248 n 3 ALA 248 Y ALA 249 n 4 ALA 249 Y PRO 250 n 5 PRO 250 Y VAL 251 n 6 VAL 251 Y GLN 252 n 7 GLN 252 Y GLU 253 n 8 GLU 253 Y THR 254 n 9 THR 254 Y LEU 255 n 10 LEU 255 Y HIS 256 n 11 HIS 256 Y GLY 257 n 12 GLY 257 Y SER 258 n 13 SER 258 Y GLN 259 n 14 GLN 259 Y PRO 260 n 15 PRO 260 Y VAL 261 n 16 VAL 261 Y THR 262 n 17 THR 262 Y GLN 263 n 18 GLN 263 Y GLU 264 n 19 GLU 264 Y ASP 265 n 20 ASP 265 Y GLY 266 n 21 GLY 266 Y author_defined_assembly 2 dimeric author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 6 hexameric 1230 -7 14590 11180 -75 36290 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -y+1,x-y,z crystal symmetry operation 83.7600000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_665 -x+y+1,-x+1,z crystal symmetry operation 41.8800000000 72.5382878210 0.0000000000 A O ILE 358 A O ILE 82 A N ILE 490 A N ILE 214 A O ILE 495 A O ILE 219 A N THR 431 A N THR 155 A N LEU 434 A N LEU 158 A O LEU 444 A O LEU 168 A O LEU 376 A O LEU 100 A N VAL 394 A N VAL 118 A N TYR 395 A N TYR 119 A O SER 408 A O SER 132 A O LEU 409 A O LEU 133 A N CYS 470 A N CYS 194 B N ILE 358 C N ILE 82 B O ILE 490 C O ILE 214 B N LYS 493 C N LYS 217 B O MET 433 C O MET 157 B O LEU 434 C O LEU 158 B N LEU 444 C N LEU 168 B N LEU 376 C N LEU 100 B O VAL 394 C O VAL 118 B N TYR 395 C N TYR 119 B O SER 408 C O SER 132 B O LYS 389 C O LYS 113 B N MET 414 C N MET 138 1 A ARG 277 A ARG 1 1 Y 1 A GLN 278 A GLN 2 1 Y 1 A ASN 279 A ASN 3 1 Y 1 A TRP 280 A TRP 4 1 Y 1 A GLU 281 A GLU 5 1 Y 1 A GLU 282 A GLU 6 1 Y 1 A ALA 283 A ALA 7 1 Y 1 A ASP 284 A ASP 8 1 Y 1 A SER 285 A SER 9 1 Y 1 A MET 286 A MET 10 1 Y 1 A LYS 287 A LYS 11 1 Y 1 A SER 288 A SER 12 1 Y 1 A SER 289 A SER 13 1 Y 1 A VAL 290 A VAL 14 1 Y 1 A GLU 291 A GLU 15 1 Y 1 A SER 292 A SER 16 1 Y 1 A LEU 293 A LEU 17 1 Y 1 A GLN 294 A GLN 18 1 Y 1 A ASN 295 A ASN 19 1 Y 1 A ARG 296 A ARG 20 1 Y 1 A VAL 297 A VAL 21 1 Y 1 A THR 298 A THR 22 1 Y 1 A GLU 299 A GLU 23 1 Y 1 B ARG 277 C ARG 1 1 Y 1 B GLN 278 C GLN 2 1 Y 1 B ASN 279 C ASN 3 1 Y 1 B TRP 280 C TRP 4 1 Y 1 B GLU 281 C GLU 5 1 Y 1 B GLU 282 C GLU 6 1 Y 1 B ALA 283 C ALA 7 1 Y 1 B ASP 284 C ASP 8 1 Y 1 B SER 285 C SER 9 1 Y 1 B MET 286 C MET 10 1 Y 1 B LYS 287 C LYS 11 1 Y 1 B SER 288 C SER 12 1 Y 1 B SER 289 C SER 13 1 Y 1 B VAL 290 C VAL 14 1 Y 1 B GLU 291 C GLU 15 1 Y 1 B SER 292 C SER 16 1 Y 1 B LEU 293 C LEU 17 1 Y 1 B GLN 294 C GLN 18 1 Y 1 B ASN 295 C ASN 19 1 Y 1 B ARG 296 C ARG 20 1 Y 1 B VAL 297 C VAL 21 1 Y 1 B THR 298 C THR 22 1 Y 1 B GLU 299 C GLU 23 1 Y 1 X X OG1 CB THR ASP 254 265 2.13 1 X X GLU ASP 264 265 149.80 1 A TYR 388 0.067 SIDE CHAIN 1 A GLU 301 -179.24 -13.64 1 A GLU 318 -34.09 -86.98 1 A SER 319 -32.74 -25.00 1 A LEU 321 -37.91 -36.61 1 A ASN 351 -168.20 35.69 1 A ARG 359 -125.53 -166.78 1 A LYS 362 -60.88 0.00 1 A GLN 366 -71.56 23.88 1 A LYS 372 -169.97 -36.62 1 A LEU 374 -36.22 -83.34 1 A SER 378 -88.57 -125.65 1 A LYS 389 -93.94 47.56 1 A MET 390 -48.61 98.50 1 A TYR 395 -116.39 74.97 1 A MET 401 -66.42 52.22 1 A GLU 417 16.79 -75.87 1 A TYR 418 -67.01 37.45 1 A PRO 423 -38.47 124.67 1 A LYS 427 -150.94 45.55 1 A SER 439 -55.73 -144.01 1 A ARG 441 29.01 105.62 1 A ARG 442 -35.72 137.04 1 A ALA 447 -105.22 -146.94 1 A PHE 448 155.63 130.84 1 A PRO 452 -32.50 -16.34 1 A PRO 460 -20.86 144.40 1 A GLU 463 -23.61 -41.59 1 A ALA 467 -49.13 164.70 1 A SER 468 -157.08 17.49 1 A PHE 473 -132.12 -80.22 1 A TYR 484 -51.35 -9.16 1 A ASP 487 42.97 15.24 1 A ASP 488 68.02 66.49 1 A ASP 497 -47.82 85.55 1 A SER 499 -2.92 -90.21 1 X THR 247 -92.68 -113.63 1 X PRO 250 -101.75 -166.52 1 X GLN 252 -108.23 -131.81 1 X THR 254 -100.00 -108.29 1 X LEU 255 170.10 118.72 1 X HIS 256 -42.57 164.74 1 X SER 258 -175.11 -31.15 1 X VAL 261 161.20 169.39 1 X GLN 263 -52.33 90.25 1 B GLU 301 -137.69 -44.63 1 B VAL 303 -55.37 1.12 1 B SER 319 -65.30 -71.78 1 B SER 329 -64.95 41.49 1 B VAL 330 -140.32 -8.97 1 B ALA 336 -48.80 -72.31 1 B PHE 342 -54.55 -70.06 1 B ASN 351 -156.36 13.34 1 B ASP 360 82.05 49.90 1 B LYS 362 -51.81 -93.57 1 B VAL 369 -41.55 -72.61 1 B MET 370 -46.80 -17.13 1 B LYS 372 -148.70 -8.73 1 B THR 373 -165.10 90.87 1 B PRO 380 -21.89 116.55 1 B MET 390 -122.38 -142.96 1 B CYS 391 -164.16 -119.48 1 B ALA 392 152.16 128.87 1 B THR 405 -141.31 16.88 1 B PHE 410 -120.86 -149.92 1 B PHE 411 -155.95 71.37 1 B ARG 415 -50.86 99.69 1 B LEU 421 -95.75 36.08 1 B PHE 426 51.16 123.20 1 B LYS 427 -144.07 54.05 1 B LYS 429 -35.50 73.30 1 B SER 439 -13.98 -31.99 1 B SER 440 -161.63 64.47 1 B PHE 448 -104.03 -149.25 1 B LYS 449 -160.09 117.89 1 B PRO 450 -41.62 151.44 1 B SER 454 -60.58 91.48 1 B SER 455 -46.21 -6.94 1 B LYS 458 -45.02 -128.30 1 B PRO 460 -42.16 169.75 1 B THR 461 -155.82 -17.20 1 B ASN 465 -84.84 -145.20 1 B THR 477 -61.85 -82.00 1 B VAL 478 -24.34 -37.04 1 B TYR 484 -49.51 -84.38 1 B ILE 485 -56.09 106.37 1 B LEU 501 104.52 115.95 1 B PRO 502 -28.26 -94.40 1 B ASP 503 145.44 148.61 1 Y ALA 248 -139.72 -98.91 1 Y ALA 249 94.19 -157.41 1 Y PRO 250 -109.92 -111.60 1 Y GLN 252 -121.52 -115.76 1 Y THR 254 -88.11 -82.27 1 Y LEU 255 158.56 146.87 1 Y SER 258 -164.24 -0.34 1 Y PRO 260 -69.87 69.80 1 Y GLN 263 -107.11 68.25 0.3120000 0.1730000 0.1730000 3.50 8.00 351 7586 72.6 RANDOM 1 2.000 3.50 8.00 0 3558 0 0 3558 0.008 1.55 3.500 50.000 1FLL 29115 2.000 0.0780000 1 14.0000 2.000 78.7 0.2600000 3.50 3.63 74.5 phasing AMoRE refinement CNS data reduction DENZO data scaling SCALEPACK MOLECULAR BASIS FOR CD40 SIGNALING MEDIATED BY TRAF3 1 N N 2 N N 1 N N 2 N N A VAL 303 A VAL 27 HELX_P A GLY 308 A GLY 32 1 1 6 A GLN 309 A GLN 33 HELX_P A ALA 311 A ALA 35 5 2 3 A ASN 313 A ASN 37 HELX_P A GLU 346 A GLU 70 1 3 34 A ASP 360 A ASP 84 HELX_P A LYS 365 A LYS 89 1 4 6 A ALA 475 A ALA 199 HELX_P A GLU 480 A GLU 204 1 5 6 B GLU 301 C GLU 25 HELX_P B LYS 305 C LYS 29 5 6 5 B VAL 310 C VAL 34 HELX_P B SER 329 C SER 53 1 7 20 B VAL 330 C VAL 54 HELX_P B GLU 346 C GLU 70 1 8 17 B ASP 360 C ASP 84 HELX_P B MET 370 C MET 94 1 9 11 B TYR 418 C TYR 142 HELX_P B LEU 422 C LEU 146 5 10 5 B ALA 475 C ALA 199 HELX_P B ASN 481 C ASN 205 1 11 7 APOPTOSIS TRAF3 WITH CD40 PEPTIDE, TNF SIGNALING, APOPTOSIS A TRP 424 A TRP 148 1 A PRO 425 A PRO 149 0.07 B TRP 424 C TRP 148 1 B PRO 425 C PRO 149 0.03 TRAF3_HUMAN UNP 1 Q13114 TNR5_HUMAN UNP 2 P25942 341 568 1FLL 277 504 Q13114 A 1 1 228 341 568 1FLL 277 504 Q13114 B 1 1 228 246 266 1FLL 246 266 P25942 X 2 1 21 246 266 1FLL 246 266 P25942 Y 2 1 21 3 ASN engineered mutation LYS 246 1FLL X P25942 UNP 246 1 3 CYS engineered mutation SER 258 1FLL X P25942 UNP 258 13 4 ASN engineered mutation LYS 246 1FLL Y P25942 UNP 246 1 4 CYS engineered mutation SER 258 1FLL Y P25942 UNP 258 13 4 4 4 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 353 A VAL 77 A ARG 359 A ARG 83 A THR 489 A THR 213 A ILE 495 A ILE 219 A THR 431 A THR 155 A MET 435 A MET 159 A LEU 444 A LEU 168 A ASP 446 A ASP 170 A LEU 376 A LEU 100 A TYR 377 A TYR 101 A ALA 392 A ALA 116 A TYR 395 A TYR 119 A LEU 407 A LEU 131 A PHE 411 A PHE 135 A CYS 470 A CYS 194 A VAL 474 A VAL 198 B ILE 355 C ILE 79 B ARG 359 C ARG 83 B THR 489 C THR 213 B LYS 493 C LYS 217 B THR 431 C THR 155 B MET 435 C MET 159 B LEU 444 C LEU 168 B ALA 447 C ALA 171 B LEU 376 C LEU 100 B TYR 377 C TYR 101 B ARG 393 C ARG 117 B TYR 395 C TYR 119 B SER 408 C SER 132 B LEU 409 C LEU 133 B LYS 389 C LYS 113 B MET 390 C MET 114 B ILE 413 C ILE 137 B MET 414 C MET 138 150 P 3 2 1