1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Moy, F.J.
Chanda, P.K.
Chen, J.M.
Cosmi, S.
Edris, W.
Levin, J.I.
Powers, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
C21 H21 N3 O5 S
427.474
N-HYDROXY-2-[(4-METHOXY-BENZENESULFONYL)-PYRIDIN-3-YLMETHYL-AMINO]-3-METHYL-BENZAMIDE
WAY-151693
non-polymer
Zn 2
65.409
ZINC ION
non-polymer
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
302
671
689
10.1006/jmbi.2000.4082
10986126
High-resolution solution structure of the catalytic fragment of human collagenase-3 (MMP-13) complexed with a hydroxamic acid inhibitor.
2000
NE
J.Biomol.NMR
JBNME9
0800
0925-2738
17
269
270
10.1023/A:1008305025043
1H, 15N, 13C, and 13CO Assignments and Secondary Structure Determination of Collagenase-3 (MMP-13) Complexed with a Hydroxamic Acid Inhibitor
2000
10.2210/pdb1fls/pdb
pdb_00001fls
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
HYDROXAMIC ACID INHIBITOR COMPLEX
18607.824
COLLAGENASE-3
3.4.24.-
CATALYTIC FRAGMENT
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
427.474
N-HYDROXY-2-[(4-METHOXY-BENZENESULFONYL)-PYRIDIN-3-YLMETHYL-AMINO]-3-METHYL-BENZAMIDE
1
syn
non-polymer
MMP-13
no
no
YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSG
LLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQ
SLYGP
YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSG
LLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQ
SLYGP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PPROMMP-13
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-08-15
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
ENSEMBLE OF 30 STRUCTURES
RCSB
Y
RCSB
2000-08-15
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
WAY
N-HYDROXY-2-[(4-METHOXY-BENZENESULFONYL)-PYRIDIN-3-YLMETHYL-AMINO]-3-METHYL-BENZAMIDE
The structure was determined using triple-resonance and isotope edited/filtered NMR spectroscopy.
1
3D_13C-separated_NOESY
3D_15N-separated_NOESY
HNHA
3D_C13-edited/filtered_NOESY
10 mM deuterated Tris-Base, 100 mM NaCl, 5 mM CaCl2, 0.1 mM ZnCl2, 2 mM NaN3, 10 mM deuterated DTT
6.5
ambient
308
K
The structure was based on 3280 experimental NMR restraints, consisting of 2415 approximate interproton distance restraints, 47 distance restraints between MMP-13 and WAY-151693, 5 intramolecular distance restraints for WAY-151693, 88 distance restraints for 44 backbone hydrogen bonds, 391 torsion angle restraints, 103 3JNHa restraints 123 Ca restraints and 108 Cb restraints.The structure was also refined with a conformational database.
distance geometry
simulated annealing
1
minimized average structure
1mM U-15N,13C-labeled MMP-13 with WAY-151693 in a 1:1 ratio,10mM deuterated Tris-Base, 100mM NaCl, 5mM CaCl2, 0.1mM ZnCl2, 2mM NaN3, 10mM deuterated DTT in 100% D2O at pH 6.5 and 35C.
100% D2O
1mM U-15N,13C-labeled MMP-13 with WAY-151693 in a 1:1 ratio,10mM deuterated Tris-Base, 100mM NaCl, 5mM CaCl2, 0.1mM ZnCl2, 2mM NaN3, 10mM deuterated DTT in 90% H2O, 10% D2O at pH 6.5 and 35C.
90% H2O/10% D2O
1mM U-15N-labeled MMP-13 with WAY-151693 in a 1:1 ratio,10mM deuterated Tris-Base, 100mM NaCl, 5mM CaCl2, 0.1mM ZnCl2, 2mM NaN3, 10mM deuterated DTT in 90% H2O, 10% D2O at pH 6.5 and 35C.
90% H2O/10% D2O
Bruker
collection
XwinNMR
2.0
Delaglio
processing
NMRPipe
1.7
Brunger
structure solution
X-PLOR
3.840
Garrett
data analysis
PIPP
4.2.8
Brunger
refinement
X-PLOR
3.840
600
Bruker
AMX-2
ZN
166
2
ZN
ZN
166
A
ZN
167
2
ZN
ZN
167
A
CA
168
3
CA
CA
168
A
WAY
169
4
WAY
WAY
169
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
LYS
9
n
9
LYS
9
A
TRP
10
n
10
TRP
10
A
SER
11
n
11
SER
11
A
LYS
12
n
12
LYS
12
A
MET
13
n
13
MET
13
A
ASN
14
n
14
ASN
14
A
LEU
15
n
15
LEU
15
A
THR
16
n
16
THR
16
A
TYR
17
n
17
TYR
17
A
ARG
18
n
18
ARG
18
A
ILE
19
n
19
ILE
19
A
VAL
20
n
20
VAL
20
A
ASN
21
n
21
ASN
21
A
TYR
22
n
22
TYR
22
A
THR
23
n
23
THR
23
A
PRO
24
n
24
PRO
24
A
ASP
25
n
25
ASP
25
A
MET
26
n
26
MET
26
A
THR
27
n
27
THR
27
A
HIS
28
n
28
HIS
28
A
SER
29
n
29
SER
29
A
GLU
30
n
30
GLU
30
A
VAL
31
n
31
VAL
31
A
GLU
32
n
32
GLU
32
A
LYS
33
n
33
LYS
33
A
ALA
34
n
34
ALA
34
A
PHE
35
n
35
PHE
35
A
LYS
36
n
36
LYS
36
A
LYS
37
n
37
LYS
37
A
ALA
38
n
38
ALA
38
A
PHE
39
n
39
PHE
39
A
LYS
40
n
40
LYS
40
A
VAL
41
n
41
VAL
41
A
TRP
42
n
42
TRP
42
A
SER
43
n
43
SER
43
A
ASP
44
n
44
ASP
44
A
VAL
45
n
45
VAL
45
A
THR
46
n
46
THR
46
A
PRO
47
n
47
PRO
47
A
LEU
48
n
48
LEU
48
A
ASN
49
n
49
ASN
49
A
PHE
50
n
50
PHE
50
A
THR
51
n
51
THR
51
A
ARG
52
n
52
ARG
52
A
LEU
53
n
53
LEU
53
A
HIS
54
n
54
HIS
54
A
ASP
55
n
55
ASP
55
A
GLY
56
n
56
GLY
56
A
ILE
57
n
57
ILE
57
A
ALA
58
n
58
ALA
58
A
ASP
59
n
59
ASP
59
A
ILE
60
n
60
ILE
60
A
MET
61
n
61
MET
61
A
ILE
62
n
62
ILE
62
A
SER
63
n
63
SER
63
A
PHE
64
n
64
PHE
64
A
GLY
65
n
65
GLY
65
A
ILE
66
n
66
ILE
66
A
LYS
67
n
67
LYS
67
A
GLU
68
n
68
GLU
68
A
HIS
69
n
69
HIS
69
A
GLY
70
n
70
GLY
70
A
ASP
71
n
71
ASP
71
A
PHE
72
n
72
PHE
72
A
TYR
73
n
73
TYR
73
A
PRO
74
n
74
PRO
74
A
PHE
75
n
75
PHE
75
A
ASP
76
n
76
ASP
76
A
GLY
77
n
77
GLY
77
A
PRO
78
n
78
PRO
78
A
SER
79
n
79
SER
79
A
GLY
80
n
80
GLY
80
A
LEU
81
n
81
LEU
81
A
LEU
82
n
82
LEU
82
A
ALA
83
n
83
ALA
83
A
HIS
84
n
84
HIS
84
A
ALA
85
n
85
ALA
85
A
PHE
86
n
86
PHE
86
A
PRO
87
n
87
PRO
87
A
PRO
88
n
88
PRO
88
A
GLY
89
n
89
GLY
89
A
PRO
90
n
90
PRO
90
A
ASN
91
n
91
ASN
91
A
TYR
92
n
92
TYR
92
A
GLY
93
n
93
GLY
93
A
GLY
94
n
94
GLY
94
A
ASP
95
n
95
ASP
95
A
ALA
96
n
96
ALA
96
A
HIS
97
n
97
HIS
97
A
PHE
98
n
98
PHE
98
A
ASP
99
n
99
ASP
99
A
ASP
100
n
100
ASP
100
A
ASP
101
n
101
ASP
101
A
GLU
102
n
102
GLU
102
A
THR
103
n
103
THR
103
A
TRP
104
n
104
TRP
104
A
THR
105
n
105
THR
105
A
SER
106
n
106
SER
106
A
SER
107
n
107
SER
107
A
SER
108
n
108
SER
108
A
LYS
109
n
109
LYS
109
A
GLY
110
n
110
GLY
110
A
TYR
111
n
111
TYR
111
A
ASN
112
n
112
ASN
112
A
LEU
113
n
113
LEU
113
A
PHE
114
n
114
PHE
114
A
LEU
115
n
115
LEU
115
A
VAL
116
n
116
VAL
116
A
ALA
117
n
117
ALA
117
A
ALA
118
n
118
ALA
118
A
HIS
119
n
119
HIS
119
A
GLU
120
n
120
GLU
120
A
PHE
121
n
121
PHE
121
A
GLY
122
n
122
GLY
122
A
HIS
123
n
123
HIS
123
A
SER
124
n
124
SER
124
A
LEU
125
n
125
LEU
125
A
GLY
126
n
126
GLY
126
A
LEU
127
n
127
LEU
127
A
ASP
128
n
128
ASP
128
A
HIS
129
n
129
HIS
129
A
SER
130
n
130
SER
130
A
LYS
131
n
131
LYS
131
A
ASP
132
n
132
ASP
132
A
PRO
133
n
133
PRO
133
A
GLY
134
n
134
GLY
134
A
ALA
135
n
135
ALA
135
A
LEU
136
n
136
LEU
136
A
MET
137
n
137
MET
137
A
PHE
138
n
138
PHE
138
A
PRO
139
n
139
PRO
139
A
ILE
140
n
140
ILE
140
A
TYR
141
n
141
TYR
141
A
THR
142
n
142
THR
142
A
TYR
143
n
143
TYR
143
A
THR
144
n
144
THR
144
A
GLY
145
n
145
GLY
145
A
LYS
146
n
146
LYS
146
A
SER
147
n
147
SER
147
A
HIS
148
n
148
HIS
148
A
PHE
149
n
149
PHE
149
A
MET
150
n
150
MET
150
A
LEU
151
n
151
LEU
151
A
PRO
152
n
152
PRO
152
A
ASP
153
n
153
ASP
153
A
ASP
154
n
154
ASP
154
A
ASP
155
n
155
ASP
155
A
VAL
156
n
156
VAL
156
A
GLN
157
n
157
GLN
157
A
GLY
158
n
158
GLY
158
A
ILE
159
n
159
ILE
159
A
GLN
160
n
160
GLN
160
A
SER
161
n
161
SER
161
A
LEU
162
n
162
LEU
162
A
TYR
163
n
163
TYR
163
A
GLY
164
n
164
GLY
164
A
n
165
165
A
author_defined_assembly
1
monomeric
A
HIS
69
A
NE2
HIS
69
1_555
A
ZN
167
C
ZN
ZN
1_555
A
HIS
84
A
NE2
HIS
84
1_555
117.0
A
HIS
69
A
NE2
HIS
69
1_555
A
ZN
167
C
ZN
ZN
1_555
A
HIS
97
A
ND1
HIS
97
1_555
90.1
A
HIS
84
A
NE2
HIS
84
1_555
A
ZN
167
C
ZN
ZN
1_555
A
HIS
97
A
ND1
HIS
97
1_555
103.7
A
ASP
76
A
OD1
ASP
76
1_555
A
CA
168
D
CA
CA
1_555
A
GLY
77
A
O
GLY
77
1_555
79.3
A
ASP
76
A
OD1
ASP
76
1_555
A
CA
168
D
CA
CA
1_555
A
PRO
78
A
O
PRO
78
1_555
113.4
A
GLY
77
A
O
GLY
77
1_555
A
CA
168
D
CA
CA
1_555
A
PRO
78
A
O
PRO
78
1_555
66.0
A
ASP
76
A
OD1
ASP
76
1_555
A
CA
168
D
CA
CA
1_555
A
SER
79
A
O
SER
79
1_555
47.4
A
GLY
77
A
O
GLY
77
1_555
A
CA
168
D
CA
CA
1_555
A
SER
79
A
O
SER
79
1_555
80.5
A
PRO
78
A
O
PRO
78
1_555
A
CA
168
D
CA
CA
1_555
A
SER
79
A
O
SER
79
1_555
71.3
A
ASP
76
A
OD1
ASP
76
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
O
LEU
81
1_555
123.7
A
GLY
77
A
O
GLY
77
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
O
LEU
81
1_555
136.8
A
PRO
78
A
O
PRO
78
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
O
LEU
81
1_555
120.5
A
SER
79
A
O
SER
79
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
O
LEU
81
1_555
142.7
A
ASP
76
A
OD1
ASP
76
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
N
LEU
81
1_555
76.2
A
GLY
77
A
O
GLY
77
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
N
LEU
81
1_555
155.2
A
PRO
78
A
O
PRO
78
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
N
LEU
81
1_555
128.2
A
SER
79
A
O
SER
79
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
N
LEU
81
1_555
85.6
A
LEU
81
A
O
LEU
81
1_555
A
CA
168
D
CA
CA
1_555
A
LEU
81
A
N
LEU
81
1_555
58.8
A
ASP
76
A
OD1
ASP
76
1_555
A
CA
168
D
CA
CA
1_555
A
ASP
99
A
OD2
ASP
99
1_555
134.1
A
GLY
77
A
O
GLY
77
1_555
A
CA
168
D
CA
CA
1_555
A
ASP
99
A
OD2
ASP
99
1_555
90.0
A
PRO
78
A
O
PRO
78
1_555
A
CA
168
D
CA
CA
1_555
A
ASP
99
A
OD2
ASP
99
1_555
101.9
A
SER
79
A
O
SER
79
1_555
A
CA
168
D
CA
CA
1_555
A
ASP
99
A
OD2
ASP
99
1_555
169.9
A
LEU
81
A
O
LEU
81
1_555
A
CA
168
D
CA
CA
1_555
A
ASP
99
A
OD2
ASP
99
1_555
47.2
A
LEU
81
A
N
LEU
81
1_555
A
CA
168
D
CA
CA
1_555
A
ASP
99
A
OD2
ASP
99
1_555
104.5
A
ASP
76
A
OD1
ASP
76
1_555
A
CA
168
D
CA
CA
1_555
A
GLU
102
A
OE2
GLU
102
1_555
161.9
A
GLY
77
A
O
GLY
77
1_555
A
CA
168
D
CA
CA
1_555
A
GLU
102
A
OE2
GLU
102
1_555
92.5
A
PRO
78
A
O
PRO
78
1_555
A
CA
168
D
CA
CA
1_555
A
GLU
102
A
OE2
GLU
102
1_555
48.6
A
SER
79
A
O
SER
79
1_555
A
CA
168
D
CA
CA
1_555
A
GLU
102
A
OE2
GLU
102
1_555
115.6
A
LEU
81
A
O
LEU
81
1_555
A
CA
168
D
CA
CA
1_555
A
GLU
102
A
OE2
GLU
102
1_555
73.1
A
LEU
81
A
N
LEU
81
1_555
A
CA
168
D
CA
CA
1_555
A
GLU
102
A
OE2
GLU
102
1_555
112.1
A
ASP
99
A
OD2
ASP
99
1_555
A
CA
168
D
CA
CA
1_555
A
GLU
102
A
OE2
GLU
102
1_555
61.2
A
HIS
119
A
NE2
HIS
119
1_555
A
ZN
166
B
ZN
ZN
1_555
A
HIS
123
A
NE2
HIS
123
1_555
74.2
A
HIS
119
A
NE2
HIS
119
1_555
A
ZN
166
B
ZN
ZN
1_555
A
HIS
129
A
NE2
HIS
129
1_555
130.9
A
HIS
123
A
NE2
HIS
123
1_555
A
ZN
166
B
ZN
ZN
1_555
A
HIS
129
A
NE2
HIS
129
1_555
98.9
A
HIS
119
A
NE2
HIS
119
1_555
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O11
WAY
1_555
135.0
A
HIS
123
A
NE2
HIS
123
1_555
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O11
WAY
1_555
148.7
A
HIS
129
A
NE2
HIS
129
1_555
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O11
WAY
1_555
71.3
A
HIS
119
A
NE2
HIS
119
1_555
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O13
WAY
1_555
94.3
A
HIS
123
A
NE2
HIS
123
1_555
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O13
WAY
1_555
100.3
A
HIS
129
A
NE2
HIS
129
1_555
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O13
WAY
1_555
134.3
A
WAY
169
E
O11
WAY
1_555
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O13
WAY
1_555
70.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
49
A
O
ASN
49
A
N
LEU
15
A
N
LEU
15
A
O
THR
16
A
O
THR
16
A
N
ILE
60
A
N
ILE
60
A
O
MET
61
A
O
MET
61
A
N
ALA
96
A
N
ALA
96
A
N
HIS
97
A
N
HIS
97
A
O
HIS
84
A
O
HIS
84
A
N
THR
105
A
N
THR
105
A
O
TYR
111
A
O
TYR
111
1
A
TYR
1
A
TYR
1
1
Y
1
A
ASN
2
A
ASN
2
1
Y
1
A
VAL
3
A
VAL
3
1
Y
1
A
PHE
4
A
PHE
4
1
Y
1
A
PRO
5
A
PRO
5
1
Y
1
A
ARG
6
A
ARG
6
1
Y
1
A
PRO
165
A
PRO
165
1
Y
1
A
A
H
OH
ASN
TYR
112
141
1.46
1
A
A
OD1
H
ASP
GLY
132
134
1.54
1
A
A
O
HE1
ASP
TRP
99
104
1.54
1
A
A
O
H
PHE
SER
39
43
1.59
1
A
THR
23
50.39
136.81
1
A
PRO
47
-67.08
17.68
1
A
LYS
67
-11.13
-84.23
1
A
HIS
69
-141.78
37.22
1
A
PRO
88
-59.06
85.39
1
A
PRO
90
-65.28
-129.16
minimized average
SOLUTION STRUCTURE OF THE CATALYTIC FRAGMENT OF HUMAN COLLAGENASE-3 (MMP-13) COMPLEXED WITH A HYDROXAMIC ACID INHIBITOR
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
THR
27
A
THR
27
HELX_P
A
VAL
45
A
VAL
45
1
1
19
A
LEU
113
A
LEU
113
HELX_P
A
LEU
125
A
LEU
125
1
2
13
A
PRO
152
A
PRO
152
HELX_P
A
GLY
164
A
GLY
164
1
3
13
metalc
2.467
A
HIS
69
A
NE2
HIS
69
1_555
A
ZN
167
C
ZN
ZN
1_555
metalc
2.968
A
ASP
76
A
OD1
ASP
76
1_555
A
CA
168
D
CA
CA
1_555
metalc
2.892
A
GLY
77
A
O
GLY
77
1_555
A
CA
168
D
CA
CA
1_555
metalc
2.984
A
PRO
78
A
O
PRO
78
1_555
A
CA
168
D
CA
CA
1_555
metalc
2.910
A
SER
79
A
O
SER
79
1_555
A
CA
168
D
CA
CA
1_555
metalc
2.883
A
LEU
81
A
O
LEU
81
1_555
A
CA
168
D
CA
CA
1_555
metalc
3.258
A
LEU
81
A
N
LEU
81
1_555
A
CA
168
D
CA
CA
1_555
metalc
2.096
A
HIS
84
A
NE2
HIS
84
1_555
A
ZN
167
C
ZN
ZN
1_555
metalc
1.888
A
HIS
97
A
ND1
HIS
97
1_555
A
ZN
167
C
ZN
ZN
1_555
metalc
2.978
A
ASP
99
A
OD2
ASP
99
1_555
A
CA
168
D
CA
CA
1_555
metalc
2.974
A
GLU
102
A
OE2
GLU
102
1_555
A
CA
168
D
CA
CA
1_555
metalc
2.095
A
HIS
119
A
NE2
HIS
119
1_555
A
ZN
166
B
ZN
ZN
1_555
metalc
2.170
A
HIS
123
A
NE2
HIS
123
1_555
A
ZN
166
B
ZN
ZN
1_555
metalc
2.192
A
HIS
129
A
NE2
HIS
129
1_555
A
ZN
166
B
ZN
ZN
1_555
metalc
2.283
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O11
WAY
1_555
metalc
2.105
A
ZN
166
B
ZN
ZN
1_555
A
WAY
169
E
O13
WAY
1_555
HYDROLASE
Matrix Metalloproteinase, Hydroxamic acid, Human Collagenase-3, MMP-13, HYDROLASE
MMP13_HUMAN
UNP
1
P45452
104
268
1FLS
1
165
P45452
A
1
1
165
5
2
parallel
parallel
parallel
anti-parallel
parallel
A
ASN
49
A
ASN
49
A
ARG
52
A
ARG
52
A
ASN
14
A
ASN
14
A
ILE
19
A
ILE
19
A
ILE
60
A
ILE
60
A
GLY
65
A
GLY
65
A
ALA
96
A
ALA
96
A
ASP
99
A
ASP
99
A
ALA
83
A
ALA
83
A
ALA
85
A
ALA
85
A
TRP
104
A
TRP
104
A
THR
105
A
THR
105
A
TYR
111
A
TYR
111
A
ASN
112
A
ASN
112
BINDING SITE FOR RESIDUE ZN A 166
A
ZN
166
Software
4
BINDING SITE FOR RESIDUE ZN A 167
A
ZN
167
Software
3
BINDING SITE FOR RESIDUE CA A 168
A
CA
168
Software
8
BINDING SITE FOR RESIDUE WAY A 169
A
WAY
169
Software
11
A
HIS
119
A
HIS
119
4
1_555
A
HIS
123
A
HIS
123
4
1_555
A
HIS
129
A
HIS
129
4
1_555
A
WAY
169
E
WAY
4
1_555
A
HIS
69
A
HIS
69
3
1_555
A
HIS
84
A
HIS
84
3
1_555
A
HIS
97
A
HIS
97
3
1_555
A
ASP
76
A
ASP
76
8
1_555
A
GLY
77
A
GLY
77
8
1_555
A
PRO
78
A
PRO
78
8
1_555
A
SER
79
A
SER
79
8
1_555
A
GLY
80
A
GLY
80
8
1_555
A
LEU
81
A
LEU
81
8
1_555
A
ASP
99
A
ASP
99
8
1_555
A
GLU
102
A
GLU
102
8
1_555
A
GLY
80
A
GLY
80
11
1_555
A
LEU
81
A
LEU
81
11
1_555
A
LEU
82
A
LEU
82
11
1_555
A
LEU
115
A
LEU
115
11
1_555
A
VAL
116
A
VAL
116
11
1_555
A
HIS
119
A
HIS
119
11
1_555
A
HIS
123
A
HIS
123
11
1_555
A
HIS
129
A
HIS
129
11
1_555
A
PRO
139
A
PRO
139
11
1_555
A
TYR
141
A
TYR
141
11
1_555
A
ZN
166
B
ZN
11
1_555