0.012786
0.000000
0.000000
0.000000
0.012786
0.000000
0.000000
0.000000
0.012379
0.00000
0.00000
0.00000
Werner, R.M.
Jiang, Y.L.
Gordley, R.G.
Jagadeesh, G.J.
Ladner, J.E.
Xiao, G.
Tordova, M.
Gilliland, G.L.
Stivers, J.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
78.210
78.210
80.780
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C4 H4 N2 O2
112.087
URACIL
non-polymer
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
N
C
N
374
N
O
N
375
N
N
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
C
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
39
12585
12594
10.1021/bi001532v
11027138
Stressing-out DNA? The contribution of serine-phosphodiester interactions in catalysis by uracil DNA glycosylase.
2000
US
Proteins
PSFGEY
0867
0887-3585
35
13
24
10.1002/(SICI)1097-0134(19990401)35:1<13::AID-PROT2>3.3.CO;2-U
Crystal structure of Escherichia coli uracil DNA glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited
1999
10.2210/pdb1flz/pdb
pdb_00001flz
incorrect carbon chiral center(s)
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
AREA DETECTOR
1997-06-11
SIEMENS HI-STAR
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
SIEMENS
25549.910
URACIL-DNA GLYCOSYLASE
3.2.2.3
Y19H
1
man
polymer
112.087
URACIL
1
syn
non-polymer
18.015
water
122
nat
water
UDG
E.C.3.2.2.3
no
no
ANELTWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRP
GIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVF
LLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVLPAESE
ANELTWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRP
GIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVF
LLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVLPAESE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia coli
B
Escherichia
sample
37762
Escherichia coli
562
Escherichia coli
1
2.42
49.09
VAPOR DIFFUSION, HANGING DROP
7.5
0.1M Na HEPES, 2% polyethylene glycol 400, 2.0M ammonium sulfate, 0.002M UAAp, pH 7.50, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
struct_ref_seq_dif
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Refinement description
Database references
Database references
Derived calculations
Data collection
1
0
2001-01-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2018-03-14
1
5
2021-11-03
1
6
2024-02-07
_software.classification
_software.name
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
E. coli uracil DNA glycosylase
E. coli uracil DNA glycosylase with uracil and glycerol
E. coli uracil DNA glycosylase
E. coli uracil DNA glycosylase
RCSB
Y
RCSB
2000-08-15
REL
URA
URACIL
HOH
water
URA
230
2
URA
URA
230
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
HOH
361
3
HOH
HOH
361
A
HOH
362
3
HOH
HOH
362
A
HOH
363
3
HOH
HOH
363
A
HOH
364
3
HOH
HOH
364
A
HOH
365
3
HOH
HOH
365
A
HOH
366
3
HOH
HOH
366
A
HOH
367
3
HOH
HOH
367
A
HOH
368
3
HOH
HOH
368
A
HOH
369
3
HOH
HOH
369
A
HOH
370
3
HOH
HOH
370
A
HOH
371
3
HOH
HOH
371
A
HOH
372
3
HOH
HOH
372
A
HOH
373
3
HOH
HOH
373
A
HOH
374
3
HOH
HOH
374
A
HOH
375
3
HOH
HOH
375
A
HOH
376
3
HOH
HOH
376
A
HOH
377
3
HOH
HOH
377
A
HOH
378
3
HOH
HOH
378
A
HOH
379
3
HOH
HOH
379
A
HOH
380
3
HOH
HOH
380
A
HOH
381
3
HOH
HOH
381
A
HOH
382
3
HOH
HOH
382
A
HOH
383
3
HOH
HOH
383
A
HOH
384
3
HOH
HOH
384
A
HOH
385
3
HOH
HOH
385
A
HOH
386
3
HOH
HOH
386
A
HOH
387
3
HOH
HOH
387
A
HOH
388
3
HOH
HOH
388
A
HOH
389
3
HOH
HOH
389
A
HOH
390
3
HOH
HOH
390
A
HOH
391
3
HOH
HOH
391
A
HOH
392
3
HOH
HOH
392
A
HOH
393
3
HOH
HOH
393
A
HOH
394
3
HOH
HOH
394
A
HOH
395
3
HOH
HOH
395
A
HOH
396
3
HOH
HOH
396
A
HOH
397
3
HOH
HOH
397
A
HOH
398
3
HOH
HOH
398
A
HOH
399
3
HOH
HOH
399
A
HOH
400
3
HOH
HOH
400
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
421
3
HOH
HOH
421
A
HOH
422
3
HOH
HOH
422
A
HOH
423
3
HOH
HOH
423
A
HOH
424
3
HOH
HOH
424
A
ALA
2
n
1
ALA
2
A
ASN
3
n
2
ASN
3
A
GLU
4
n
3
GLU
4
A
LEU
5
n
4
LEU
5
A
THR
6
n
5
THR
6
A
TRP
7
n
6
TRP
7
A
HIS
8
n
7
HIS
8
A
ASP
9
n
8
ASP
9
A
VAL
10
n
9
VAL
10
A
LEU
11
n
10
LEU
11
A
ALA
12
n
11
ALA
12
A
GLU
13
n
12
GLU
13
A
GLU
14
n
13
GLU
14
A
LYS
15
n
14
LYS
15
A
GLN
16
n
15
GLN
16
A
GLN
17
n
16
GLN
17
A
PRO
18
n
17
PRO
18
A
HIS
19
n
18
HIS
19
A
PHE
20
n
19
PHE
20
A
LEU
21
n
20
LEU
21
A
ASN
22
n
21
ASN
22
A
THR
23
n
22
THR
23
A
LEU
24
n
23
LEU
24
A
GLN
25
n
24
GLN
25
A
THR
26
n
25
THR
26
A
VAL
27
n
26
VAL
27
A
ALA
28
n
27
ALA
28
A
SER
29
n
28
SER
29
A
GLU
30
n
29
GLU
30
A
ARG
31
n
30
ARG
31
A
GLN
32
n
31
GLN
32
A
SER
33
n
32
SER
33
A
GLY
34
n
33
GLY
34
A
VAL
35
n
34
VAL
35
A
THR
36
n
35
THR
36
A
ILE
37
n
36
ILE
37
A
TYR
38
n
37
TYR
38
A
PRO
39
n
38
PRO
39
A
PRO
40
n
39
PRO
40
A
GLN
41
n
40
GLN
41
A
LYS
42
n
41
LYS
42
A
ASP
43
n
42
ASP
43
A
VAL
44
n
43
VAL
44
A
PHE
45
n
44
PHE
45
A
ASN
46
n
45
ASN
46
A
ALA
47
n
46
ALA
47
A
PHE
48
n
47
PHE
48
A
ARG
49
n
48
ARG
49
A
PHE
50
n
49
PHE
50
A
THR
51
n
50
THR
51
A
GLU
52
n
51
GLU
52
A
LEU
53
n
52
LEU
53
A
GLY
54
n
53
GLY
54
A
ASP
55
n
54
ASP
55
A
VAL
56
n
55
VAL
56
A
LYS
57
n
56
LYS
57
A
VAL
58
n
57
VAL
58
A
VAL
59
n
58
VAL
59
A
ILE
60
n
59
ILE
60
A
LEU
61
n
60
LEU
61
A
GLY
62
n
61
GLY
62
A
GLN
63
n
62
GLN
63
A
ASP
64
n
63
ASP
64
A
PRO
65
n
64
PRO
65
A
TYR
66
n
65
TYR
66
A
HIS
67
n
66
HIS
67
A
GLY
68
n
67
GLY
68
A
PRO
69
n
68
PRO
69
A
GLY
70
n
69
GLY
70
A
GLN
71
n
70
GLN
71
A
ALA
72
n
71
ALA
72
A
HIS
73
n
72
HIS
73
A
GLY
74
n
73
GLY
74
A
LEU
75
n
74
LEU
75
A
ALA
76
n
75
ALA
76
A
PHE
77
n
76
PHE
77
A
SER
78
n
77
SER
78
A
VAL
79
n
78
VAL
79
A
ARG
80
n
79
ARG
80
A
PRO
81
n
80
PRO
81
A
GLY
82
n
81
GLY
82
A
ILE
83
n
82
ILE
83
A
ALA
84
n
83
ALA
84
A
ILE
85
n
84
ILE
85
A
PRO
86
n
85
PRO
86
A
PRO
87
n
86
PRO
87
A
SER
88
n
87
SER
88
A
LEU
89
n
88
LEU
89
A
LEU
90
n
89
LEU
90
A
ASN
91
n
90
ASN
91
A
MET
92
n
91
MET
92
A
TYR
93
n
92
TYR
93
A
LYS
94
n
93
LYS
94
A
GLU
95
n
94
GLU
95
A
LEU
96
n
95
LEU
96
A
GLU
97
n
96
GLU
97
A
ASN
98
n
97
ASN
98
A
THR
99
n
98
THR
99
A
ILE
100
n
99
ILE
100
A
PRO
101
n
100
PRO
101
A
GLY
102
n
101
GLY
102
A
PHE
103
n
102
PHE
103
A
THR
104
n
103
THR
104
A
ARG
105
n
104
ARG
105
A
PRO
106
n
105
PRO
106
A
ASN
107
n
106
ASN
107
A
HIS
108
n
107
HIS
108
A
GLY
109
n
108
GLY
109
A
TYR
110
n
109
TYR
110
A
LEU
111
n
110
LEU
111
A
GLU
112
n
111
GLU
112
A
SER
113
n
112
SER
113
A
TRP
114
n
113
TRP
114
A
ALA
115
n
114
ALA
115
A
ARG
116
n
115
ARG
116
A
GLN
117
n
116
GLN
117
A
GLY
118
n
117
GLY
118
A
VAL
119
n
118
VAL
119
A
LEU
120
n
119
LEU
120
A
LEU
121
n
120
LEU
121
A
LEU
122
n
121
LEU
122
A
ASN
123
n
122
ASN
123
A
THR
124
n
123
THR
124
A
VAL
125
n
124
VAL
125
A
LEU
126
n
125
LEU
126
A
THR
127
n
126
THR
127
A
VAL
128
n
127
VAL
128
A
ARG
129
n
128
ARG
129
A
ALA
130
n
129
ALA
130
A
GLY
131
n
130
GLY
131
A
GLN
132
n
131
GLN
132
A
ALA
133
n
132
ALA
133
A
HIS
134
n
133
HIS
134
A
SER
135
n
134
SER
135
A
HIS
136
n
135
HIS
136
A
ALA
137
n
136
ALA
137
A
SER
138
n
137
SER
138
A
LEU
139
n
138
LEU
139
A
GLY
140
n
139
GLY
140
A
TRP
141
n
140
TRP
141
A
GLU
142
n
141
GLU
142
A
THR
143
n
142
THR
143
A
PHE
144
n
143
PHE
144
A
THR
145
n
144
THR
145
A
ASP
146
n
145
ASP
146
A
LYS
147
n
146
LYS
147
A
VAL
148
n
147
VAL
148
A
ILE
149
n
148
ILE
149
A
SER
150
n
149
SER
150
A
LEU
151
n
150
LEU
151
A
ILE
152
n
151
ILE
152
A
ASN
153
n
152
ASN
153
A
GLN
154
n
153
GLN
154
A
HIS
155
n
154
HIS
155
A
ARG
156
n
155
ARG
156
A
GLU
157
n
156
GLU
157
A
GLY
158
n
157
GLY
158
A
VAL
159
n
158
VAL
159
A
VAL
160
n
159
VAL
160
A
PHE
161
n
160
PHE
161
A
LEU
162
n
161
LEU
162
A
LEU
163
n
162
LEU
163
A
TRP
164
n
163
TRP
164
A
GLY
165
n
164
GLY
165
A
SER
166
n
165
SER
166
A
HIS
167
n
166
HIS
167
A
ALA
168
n
167
ALA
168
A
GLN
169
n
168
GLN
169
A
LYS
170
n
169
LYS
170
A
LYS
171
n
170
LYS
171
A
GLY
172
n
171
GLY
172
A
ALA
173
n
172
ALA
173
A
ILE
174
n
173
ILE
174
A
ILE
175
n
174
ILE
175
A
ASP
176
n
175
ASP
176
A
LYS
177
n
176
LYS
177
A
GLN
178
n
177
GLN
178
A
ARG
179
n
178
ARG
179
A
HIS
180
n
179
HIS
180
A
HIS
181
n
180
HIS
181
A
VAL
182
n
181
VAL
182
A
LEU
183
n
182
LEU
183
A
LYS
184
n
183
LYS
184
A
ALA
185
n
184
ALA
185
A
PRO
186
n
185
PRO
186
A
HIS
187
n
186
HIS
187
A
PRO
188
n
187
PRO
188
A
SER
189
n
188
SER
189
A
PRO
190
n
189
PRO
190
A
LEU
191
n
190
LEU
191
A
SER
192
n
191
SER
192
A
ALA
193
n
192
ALA
193
A
HIS
194
n
193
HIS
194
A
ARG
195
n
194
ARG
195
A
GLY
196
n
195
GLY
196
A
PHE
197
n
196
PHE
197
A
PHE
198
n
197
PHE
198
A
GLY
199
n
198
GLY
199
A
CYS
200
n
199
CYS
200
A
ASN
201
n
200
ASN
201
A
HIS
202
n
201
HIS
202
A
PHE
203
n
202
PHE
203
A
VAL
204
n
203
VAL
204
A
LEU
205
n
204
LEU
205
A
ALA
206
n
205
ALA
206
A
ASN
207
n
206
ASN
207
A
GLN
208
n
207
GLN
208
A
TRP
209
n
208
TRP
209
A
LEU
210
n
209
LEU
210
A
GLU
211
n
210
GLU
211
A
GLN
212
n
211
GLN
212
A
HIS
213
n
212
HIS
213
A
GLY
214
n
213
GLY
214
A
GLU
215
n
214
GLU
215
A
THR
216
n
215
THR
216
A
PRO
217
n
216
PRO
217
A
ILE
218
n
217
ILE
218
A
ASP
219
n
218
ASP
219
A
TRP
220
n
219
TRP
220
A
MET
221
n
220
MET
221
A
PRO
222
n
221
PRO
222
A
VAL
223
n
222
VAL
223
A
LEU
224
n
223
LEU
224
A
PRO
225
n
224
PRO
225
A
ALA
226
n
225
ALA
226
A
GLU
227
n
226
GLU
227
A
SER
228
n
227
SER
228
A
GLU
229
n
228
GLU
229
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
120
A
N
LEU
119
A
O
VAL
58
A
O
VAL
57
A
N
VAL
59
A
N
VAL
58
A
O
VAL
160
A
O
VAL
159
A
N
PHE
161
A
N
PHE
160
A
O
HIS
181
A
O
HIS
180
1
A
CA
GLU
14
WRONG HAND
1
A
CA
LEU
120
PLANAR
1
A
CA
GLU
227
PLANAR
1
-6.62
0.90
118.30
111.68
A
A
A
CB
CG
OD2
ASP
ASP
ASP
64
64
64
N
1
12.50
1.90
110.20
122.70
A
A
A
CB
CA
C
LEU
LEU
LEU
120
120
120
N
1
16.00
1.80
110.60
126.60
A
A
A
N
CA
CB
GLU
GLU
GLU
227
227
227
N
1
A
A
CD
OE2
GLU
GLU
142
142
0.069
0.011
1.252
1.321
N
1
A
A
CD
OE2
GLU
GLU
157
157
0.070
0.011
1.252
1.322
N
1
A
ASN
3
-56.74
170.08
1
A
ALA
12
-4.67
-109.92
1
A
GLU
13
-18.22
-66.59
1
A
GLN
16
-66.53
38.32
1
A
PRO
18
-51.30
-102.55
1
A
HIS
19
-6.08
-58.99
1
A
PHE
20
-55.50
-71.82
1
A
ASN
22
-75.12
21.03
1
A
VAL
27
-65.02
-83.14
1
A
ALA
28
-25.71
-49.23
1
A
SER
29
-51.48
-85.02
1
A
VAL
35
-25.31
124.03
1
A
ASN
46
-18.89
-43.55
1
A
PHE
48
-48.39
-19.21
1
A
ASP
55
-64.02
7.29
1
A
GLN
63
-157.33
-25.96
1
A
PRO
65
-59.86
-177.34
1
A
GLN
71
-62.34
-84.15
1
A
ALA
76
-31.11
89.47
1
A
PHE
77
98.87
-9.84
1
A
PRO
87
-10.97
-62.19
1
A
ARG
105
-40.27
162.57
1
A
GLN
117
-109.16
69.38
1
A
LEU
121
-55.27
83.99
1
A
ARG
129
-44.62
-94.76
1
A
ALA
130
173.04
109.05
1
A
ALA
133
-43.88
152.81
1
A
HIS
134
50.58
-90.83
1
A
SER
135
43.32
7.65
1
A
HIS
136
-161.68
36.02
1
A
HIS
155
-104.51
-161.62
1
A
ARG
156
13.99
123.53
1
A
LYS
171
-55.41
49.26
1
A
ALA
173
-94.57
54.05
1
A
ALA
193
-29.87
-50.46
1
A
HIS
194
-64.23
16.96
1
A
PHE
198
-68.98
99.15
1
A
CYS
200
-48.42
173.19
1
A
HIS
202
-27.61
-47.73
1
A
LEU
205
-48.22
-19.69
1
A
LEU
224
-109.08
77.91
1
A
PRO
225
-68.27
-146.45
1
A
ALA
226
52.29
110.80
0.2200000
2.3
36
11949
11146
1
NONE
2.3
36
122
1940
8
0
1810
0.006
2.107
2.3
36
1FLZ
11949
11146
0.1400000
1
14
7.1
96
0.2600000
2.30
2.40
1
3.8
92
phasing
AMoRE
refinement
TNT
data collection
FRAMBO
data scaling
X-GEN
URACIL DNA GLYCOSYLASE WITH UAAP
1
N
N
2
N
N
3
N
N
A
THR
6
A
THR
5
HELX_P
A
GLN
16
A
GLN
15
1
1
11
A
GLN
17
A
GLN
16
HELX_P
A
SER
33
A
SER
32
1
2
17
A
PHE
45
A
PHE
44
HELX_P
A
THR
51
A
THR
50
1
3
7
A
PRO
86
A
PRO
85
HELX_P
A
THR
99
A
THR
98
1
4
14
A
LEU
111
A
LEU
110
HELX_P
A
GLN
117
A
GLN
116
1
5
7
A
GLY
140
A
GLY
139
HELX_P
A
HIS
155
A
HIS
154
1
6
16
A
GLY
165
A
GLY
164
HELX_P
A
LYS
171
A
LYS
170
1
7
7
A
SER
192
A
SER
191
HELX_P
A
GLY
196
A
GLY
195
5
8
5
A
ASN
201
A
ASN
200
HELX_P
A
GLN
212
A
GLN
211
1
9
12
HYDROLASE
glycosylase, hydrolase
A
TYR
38
A
TYR
37
1
A
PRO
39
A
PRO
38
-1.48
UNG_ECOLI
UNP
1
2
P12295
ANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRP
GIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVF
LLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDWMPVLPAESE
1
228
1FLZ
2
229
P12295
A
1
1
228
1
TYR
engineered mutation
HIS
19
1FLZ
A
P12295
UNP
18
18
1
ARG
engineered mutation
HIS
213
1FLZ
A
P12295
UNP
212
212
4
parallel
parallel
parallel
A
VAL
119
A
VAL
118
A
ASN
123
A
ASN
122
A
VAL
58
A
VAL
57
A
GLY
62
A
GLY
61
A
VAL
160
A
VAL
159
A
TRP
164
A
TRP
163
A
HIS
181
A
HIS
180
A
ALA
185
A
ALA
184
BINDING SITE FOR RESIDUE URA A 230
A
URA
230
Software
7
A
ASP
64
A
ASP
63
7
1_555
A
TYR
66
A
TYR
65
7
1_555
A
LEU
75
A
LEU
74
7
1_555
A
ALA
76
A
ALA
75
7
1_555
A
PHE
77
A
PHE
76
7
1_555
A
ASN
123
A
ASN
122
7
1_555
A
HIS
187
A
HIS
186
7
1_555
96
tetragonal
P 43 21 2