0.020747
0.011978
0.000000
0.000000
0.023956
0.000000
0.000000
0.000000
0.008482
0.00000
0.00000
0.00000
Natarajan, K.
Sawicki, M.W.
Margulies, D.H.
Mariuzza, R.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.0
90.0
120.0
48.2
48.2
117.9
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
39
14779
14786
10.1021/bi0018180
11101293
Crystal structure of human CD69: a C-type lectin-like activation marker of hematopoietic cells.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
200
1
CCD
2000-03-18
CUSTOM-MADE
SINGLE WAVELENGTH
M
x-ray
1
1.08
1.0
19-ID
APS
1.08
SYNCHROTRON
APS BEAMLINE 19-ID
16098.035
EARLY ACTIVATION ANTIGEN CD69
C-TYPE LECTIN-LIKE DOMAIN
1
man
polymer
18.015
water
128
nat
water
EARLY T-CELL ACTIVATION ANTIGEN P6, GP32/28, LEU-23, MLR-3, EA1, BL-AC/P26, ACTIVATION INDUCER MOLECULE, AIM
no
no
MASGQYNCPGQYTFSMPSDSHVSSCSEDWVGYQRKCYFISTVKRSWTSAQNACSEHGATLAVIDSEKDMNFLKRYAGREE
HWVGLKKEPGHPWKWSNGKEFNNWFNVTGSDKCVFLKNTEVSSMECEKNLYWICNKPYK
MASGQYNCPGQYTFSMPSDSHVSSCSEDWVGYQRKCYFISTVKRSWTSAQNACSEHGATLAVIDSEKDMNFLKRYAGREE
HWVGLKKEPGHPWKWSNGKEFNNWFNVTGSDKCVFLKNTEVSSMECEKNLYWICNKPYK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PET21A
1
2.46
49.92
VAPOR DIFFUSION, HANGING DROP
7.0
0.1M Sodium Acetate, pH 4.5, 0.2M Zinc Acetate, 20% PEG 1000, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
repository
Initial release
Version format compliance
Version format compliance
Structure summary
1
0
2000-12-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2016-09-21
RCSB
Y
RCSB
2000-08-16
REL
HOH
water
TIP
201
2
HOH
HOH
201
A
TIP
202
2
HOH
HOH
202
A
TIP
203
2
HOH
HOH
203
A
TIP
204
2
HOH
HOH
204
A
TIP
205
2
HOH
HOH
205
A
TIP
206
2
HOH
HOH
206
A
TIP
207
2
HOH
HOH
207
A
TIP
208
2
HOH
HOH
208
A
TIP
209
2
HOH
HOH
209
A
TIP
210
2
HOH
HOH
210
A
TIP
211
2
HOH
HOH
211
A
TIP
212
2
HOH
HOH
212
A
TIP
213
2
HOH
HOH
213
A
TIP
214
2
HOH
HOH
214
A
TIP
215
2
HOH
HOH
215
A
TIP
216
2
HOH
HOH
216
A
TIP
217
2
HOH
HOH
217
A
TIP
218
2
HOH
HOH
218
A
TIP
219
2
HOH
HOH
219
A
TIP
220
2
HOH
HOH
220
A
TIP
221
2
HOH
HOH
221
A
TIP
222
2
HOH
HOH
222
A
TIP
223
2
HOH
HOH
223
A
TIP
224
2
HOH
HOH
224
A
TIP
225
2
HOH
HOH
225
A
TIP
226
2
HOH
HOH
226
A
TIP
227
2
HOH
HOH
227
A
TIP
228
2
HOH
HOH
228
A
TIP
229
2
HOH
HOH
229
A
TIP
230
2
HOH
HOH
230
A
TIP
231
2
HOH
HOH
231
A
TIP
232
2
HOH
HOH
232
A
TIP
233
2
HOH
HOH
233
A
TIP
234
2
HOH
HOH
234
A
TIP
235
2
HOH
HOH
235
A
TIP
236
2
HOH
HOH
236
A
TIP
237
2
HOH
HOH
237
A
TIP
238
2
HOH
HOH
238
A
TIP
239
2
HOH
HOH
239
A
TIP
240
2
HOH
HOH
240
A
TIP
241
2
HOH
HOH
241
A
TIP
242
2
HOH
HOH
242
A
TIP
243
2
HOH
HOH
243
A
TIP
244
2
HOH
HOH
244
A
TIP
245
2
HOH
HOH
245
A
TIP
246
2
HOH
HOH
246
A
TIP
247
2
HOH
HOH
247
A
TIP
248
2
HOH
HOH
248
A
TIP
249
2
HOH
HOH
249
A
TIP
250
2
HOH
HOH
250
A
TIP
251
2
HOH
HOH
251
A
TIP
252
2
HOH
HOH
252
A
TIP
253
2
HOH
HOH
253
A
TIP
254
2
HOH
HOH
254
A
TIP
255
2
HOH
HOH
255
A
TIP
256
2
HOH
HOH
256
A
TIP
257
2
HOH
HOH
257
A
TIP
258
2
HOH
HOH
258
A
TIP
259
2
HOH
HOH
259
A
TIP
260
2
HOH
HOH
260
A
TIP
261
2
HOH
HOH
261
A
TIP
262
2
HOH
HOH
262
A
TIP
263
2
HOH
HOH
263
A
TIP
264
2
HOH
HOH
264
A
TIP
265
2
HOH
HOH
265
A
TIP
266
2
HOH
HOH
266
A
TIP
267
2
HOH
HOH
267
A
TIP
268
2
HOH
HOH
268
A
TIP
269
2
HOH
HOH
269
A
TIP
270
2
HOH
HOH
270
A
TIP
271
2
HOH
HOH
271
A
TIP
272
2
HOH
HOH
272
A
TIP
273
2
HOH
HOH
273
A
TIP
274
2
HOH
HOH
274
A
TIP
275
2
HOH
HOH
275
A
TIP
276
2
HOH
HOH
276
A
TIP
277
2
HOH
HOH
277
A
TIP
278
2
HOH
HOH
278
A
TIP
279
2
HOH
HOH
279
A
TIP
280
2
HOH
HOH
280
A
TIP
281
2
HOH
HOH
281
A
TIP
282
2
HOH
HOH
282
A
TIP
283
2
HOH
HOH
283
A
TIP
284
2
HOH
HOH
284
A
TIP
285
2
HOH
HOH
285
A
TIP
286
2
HOH
HOH
286
A
TIP
287
2
HOH
HOH
287
A
TIP
288
2
HOH
HOH
288
A
TIP
289
2
HOH
HOH
289
A
TIP
290
2
HOH
HOH
290
A
TIP
291
2
HOH
HOH
291
A
TIP
292
2
HOH
HOH
292
A
TIP
293
2
HOH
HOH
293
A
TIP
294
2
HOH
HOH
294
A
TIP
295
2
HOH
HOH
295
A
TIP
296
2
HOH
HOH
296
A
TIP
297
2
HOH
HOH
297
A
TIP
298
2
HOH
HOH
298
A
TIP
299
2
HOH
HOH
299
A
TIP
300
2
HOH
HOH
300
A
TIP
301
2
HOH
HOH
301
A
TIP
302
2
HOH
HOH
302
A
TIP
303
2
HOH
HOH
303
A
TIP
304
2
HOH
HOH
304
A
TIP
305
2
HOH
HOH
305
A
TIP
306
2
HOH
HOH
306
A
TIP
307
2
HOH
HOH
307
A
TIP
308
2
HOH
HOH
308
A
TIP
309
2
HOH
HOH
309
A
TIP
310
2
HOH
HOH
310
A
TIP
311
2
HOH
HOH
311
A
TIP
312
2
HOH
HOH
312
A
TIP
313
2
HOH
HOH
313
A
TIP
314
2
HOH
HOH
314
A
TIP
315
2
HOH
HOH
315
A
TIP
316
2
HOH
HOH
316
A
TIP
317
2
HOH
HOH
317
A
TIP
318
2
HOH
HOH
318
A
TIP
319
2
HOH
HOH
319
A
TIP
320
2
HOH
HOH
320
A
TIP
321
2
HOH
HOH
321
A
TIP
322
2
HOH
HOH
322
A
TIP
323
2
HOH
HOH
323
A
TIP
324
2
HOH
HOH
324
A
TIP
325
2
HOH
HOH
325
A
TIP
326
2
HOH
HOH
326
A
TIP
327
2
HOH
HOH
327
A
TIP
328
2
HOH
HOH
328
A
n
1
61
A
n
2
62
A
n
3
63
A
n
4
64
A
n
5
65
A
n
6
66
A
n
7
67
A
n
8
68
A
n
9
69
A
n
10
70
A
n
11
71
A
n
12
72
A
n
13
73
A
n
14
74
A
n
15
75
A
n
16
76
A
n
17
77
A
SER
78
n
18
SER
78
A
ASP
79
n
19
ASP
79
A
SER
80
n
20
SER
80
A
n
21
81
A
n
22
82
A
n
23
83
A
n
24
84
A
CYS
85
n
25
CYS
85
A
SER
86
n
26
SER
86
A
GLU
87
n
27
GLU
87
A
ASP
88
n
28
ASP
88
A
TRP
89
n
29
TRP
89
A
VAL
90
n
30
VAL
90
A
GLY
91
n
31
GLY
91
A
TYR
92
n
32
TYR
92
A
GLN
93
n
33
GLN
93
A
ARG
94
n
34
ARG
94
A
LYS
95
n
35
LYS
95
A
CYS
96
n
36
CYS
96
A
TYR
97
n
37
TYR
97
A
PHE
98
n
38
PHE
98
A
ILE
99
n
39
ILE
99
A
SER
100
n
40
SER
100
A
THR
101
n
41
THR
101
A
VAL
102
n
42
VAL
102
A
LYS
103
n
43
LYS
103
A
ARG
104
n
44
ARG
104
A
SER
105
n
45
SER
105
A
TRP
106
n
46
TRP
106
A
THR
107
n
47
THR
107
A
SER
108
n
48
SER
108
A
ALA
109
n
49
ALA
109
A
GLN
110
n
50
GLN
110
A
ASN
111
n
51
ASN
111
A
ALA
112
n
52
ALA
112
A
CYS
113
n
53
CYS
113
A
SER
114
n
54
SER
114
A
GLU
115
n
55
GLU
115
A
HIS
116
n
56
HIS
116
A
GLY
117
n
57
GLY
117
A
ALA
118
n
58
ALA
118
A
THR
119
n
59
THR
119
A
LEU
120
n
60
LEU
120
A
ALA
121
n
61
ALA
121
A
VAL
122
n
62
VAL
122
A
ILE
123
n
63
ILE
123
A
ASP
124
n
64
ASP
124
A
SER
125
n
65
SER
125
A
GLU
126
n
66
GLU
126
A
LYS
127
n
67
LYS
127
A
ASP
128
n
68
ASP
128
A
MET
129
n
69
MET
129
A
ASN
130
n
70
ASN
130
A
PHE
131
n
71
PHE
131
A
LEU
132
n
72
LEU
132
A
LYS
133
n
73
LYS
133
A
ARG
134
n
74
ARG
134
A
TYR
135
n
75
TYR
135
A
ALA
136
n
76
ALA
136
A
GLY
137
n
77
GLY
137
A
ARG
138
n
78
ARG
138
A
GLU
139
n
79
GLU
139
A
GLU
140
n
80
GLU
140
A
HIS
141
n
81
HIS
141
A
TRP
142
n
82
TRP
142
A
VAL
143
n
83
VAL
143
A
GLY
144
n
84
GLY
144
A
LEU
145
n
85
LEU
145
A
LYS
146
n
86
LYS
146
A
LYS
147
n
87
LYS
147
A
GLU
148
n
88
GLU
148
A
PRO
149
n
89
PRO
149
A
GLY
150
n
90
GLY
150
A
HIS
151
n
91
HIS
151
A
PRO
152
n
92
PRO
152
A
TRP
153
n
93
TRP
153
A
LYS
154
n
94
LYS
154
A
TRP
155
n
95
TRP
155
A
SER
156
n
96
SER
156
A
ASN
157
n
97
ASN
157
A
GLY
158
n
98
GLY
158
A
LYS
159
n
99
LYS
159
A
GLU
160
n
100
GLU
160
A
PHE
161
n
101
PHE
161
A
ASN
162
n
102
ASN
162
A
ASN
163
n
103
ASN
163
A
TRP
164
n
104
TRP
164
A
PHE
165
n
105
PHE
165
A
ASN
166
n
106
ASN
166
A
VAL
167
n
107
VAL
167
A
THR
168
n
108
THR
168
A
GLY
169
n
109
GLY
169
A
SER
170
n
110
SER
170
A
ASP
171
n
111
ASP
171
A
LYS
172
n
112
LYS
172
A
CYS
173
n
113
CYS
173
A
VAL
174
n
114
VAL
174
A
PHE
175
n
115
PHE
175
A
LEU
176
n
116
LEU
176
A
LYS
177
n
117
LYS
177
A
ASN
178
n
118
ASN
178
A
THR
179
n
119
THR
179
A
GLU
180
n
120
GLU
180
A
VAL
181
n
121
VAL
181
A
SER
182
n
122
SER
182
A
SER
183
n
123
SER
183
A
MET
184
n
124
MET
184
A
GLU
185
n
125
GLU
185
A
CYS
186
n
126
CYS
186
A
GLU
187
n
127
GLU
187
A
LYS
188
n
128
LYS
188
A
ASN
189
n
129
ASN
189
A
LEU
190
n
130
LEU
190
A
TYR
191
n
131
TYR
191
A
TRP
192
n
132
TRP
192
A
ILE
193
n
133
ILE
193
A
CYS
194
n
134
CYS
194
A
ASN
195
n
135
ASN
195
A
LYS
196
n
136
LYS
196
A
PRO
197
n
137
PRO
197
A
TYR
198
n
138
TYR
198
A
LYS
199
n
139
LYS
199
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_665
-x+1,-x+y+1,-z+1/3
crystal symmetry operation
24.1000000000
41.7424244624
39.3000000000
A
N
VAL
90
A
N
VAL
30
A
O
TYR
97
A
O
TYR
37
A
N
CYS
96
A
N
CYS
36
A
O
LYS
196
A
O
LYS
136
A
O
TYR
191
A
O
TYR
131
A
N
TRP
142
A
N
TRP
82
A
N
LYS
146
A
N
LYS
86
A
O
LYS
154
A
O
LYS
94
A
N
THR
119
A
N
THR
59
A
O
ASN
195
A
O
ASN
135
A
O
TYR
191
A
O
TYR
131
A
N
TRP
142
A
N
TRP
82
A
N
LEU
145
A
N
LEU
85
A
O
VAL
174
A
O
VAL
114
A
N
CYS
173
A
N
CYS
113
A
O
MET
184
A
O
MET
124
1
A
CA
LYS
199
A
CA
LYS
139
1
Y
1
A
C
LYS
199
A
C
LYS
139
1
Y
1
A
O
LYS
199
A
O
LYS
139
1
Y
1
A
CB
LYS
199
A
CB
LYS
139
1
Y
1
A
CG
LYS
199
A
CG
LYS
139
1
Y
1
A
CD
LYS
199
A
CD
LYS
139
1
Y
1
A
CE
LYS
199
A
CE
LYS
139
1
Y
1
A
NZ
LYS
199
A
NZ
LYS
139
1
Y
1
A
MET
61
A
MET
1
1
Y
1
A
ALA
62
A
ALA
2
1
Y
1
A
SER
63
A
SER
3
1
Y
1
A
GLY
64
A
GLY
4
1
Y
1
A
GLN
65
A
GLN
5
1
Y
1
A
TYR
66
A
TYR
6
1
Y
1
A
ASN
67
A
ASN
7
1
Y
1
A
CYS
68
A
CYS
8
1
Y
1
A
PRO
69
A
PRO
9
1
Y
1
A
GLY
70
A
GLY
10
1
Y
1
A
GLN
71
A
GLN
11
1
Y
1
A
TYR
72
A
TYR
12
1
Y
1
A
THR
73
A
THR
13
1
Y
1
A
PHE
74
A
PHE
14
1
Y
1
A
SER
75
A
SER
15
1
Y
1
A
MET
76
A
MET
16
1
Y
1
A
PRO
77
A
PRO
17
1
Y
1
A
HIS
81
A
HIS
21
1
Y
1
A
VAL
82
A
VAL
22
1
Y
1
A
SER
83
A
SER
23
1
Y
1
A
SER
84
A
SER
24
1
Y
1
A
A
O
OH
SER
TYR
78
135
2.17
1
A
A
OE1
O
GLU
HOH
87
273
2.15
1_555
4_555
1
A
ASP
79
-161.76
-169.77
1
A
ALA
121
-29.04
119.06
1
A
PRO
149
-22.54
-61.28
1
A
SER
182
-130.10
-155.23
1
A
TYR
198
71.37
-63.11
0.299
0.243
2.27
15.0
354
7836
6598
5.4
Random
1
THROUGHOUT
2.0
Engh & Huber
2.27
15.0
128
1090
0
0
962
1.38
0.0069
22.7
0.76
2.27
50.0
1FM5
1.0
0.062
1
17.3
96.3
0.306
2.27
2.35
1
86.5
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
CNS
EARLY ACTIVATION ANTIGEN CD69
CRYSTAL STRUCTURE OF HUMAN CD69
1
N
N
2
N
N
The biological assembly is a disulfide linked homodimer
A
SER
105
A
SER
45
HELX_P
A
HIS
116
A
HIS
56
1
1
12
A
SER
125
A
SER
65
HELX_P
A
GLY
137
A
GLY
77
1
2
13
disulf
2.027
A
CYS
85
A
SG
CYS
25
1_555
A
CYS
96
A
SG
CYS
36
1_555
disulf
2.034
A
CYS
113
A
SG
CYS
53
1_555
A
CYS
194
A
SG
CYS
134
1_555
disulf
2.039
A
CYS
173
A
SG
CYS
113
1_555
A
CYS
186
A
SG
CYS
126
1_555
IMMUNE SYSTEM
C-type Lectin-Like Domain, Natural Killer cell receptor, lectin, C-type Lectin, immune system
CD69_HUMAN
UNP
1
64
Q07108
GQYNCPGQYTFSMPSDSHVSSCSEDWVGYQRKCYFISTVKRSWTSAQNACSEHGATLAVIDSEKDMNFLKRYAGREEHWV
GLKKEPGHPWKWSNGKEFNNWFNVTGSDKCVFLKNTEVSSMECEKNLYWICNKPYK
64
199
1FM5
64
199
Q07108
A
1
4
139
1
EXPRESSION TAG
MET
61
1FM5
A
Q07108
UNP
1
1
EXPRESSION TAG
ALA
62
1FM5
A
Q07108
UNP
2
1
EXPRESSION TAG
SER
63
1FM5
A
Q07108
UNP
3
5
5
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
VAL
90
A
VAL
30
A
TYR
92
A
TYR
32
A
LYS
95
A
LYS
35
A
ILE
99
A
ILE
39
A
TYR
191
A
TYR
131
A
PRO
197
A
PRO
137
A
HIS
141
A
HIS
81
A
LYS
146
A
LYS
86
A
LYS
154
A
LYS
94
A
TRP
155
A
TRP
95
A
THR
119
A
THR
59
A
LEU
120
A
LEU
60
A
TYR
191
A
TYR
131
A
PRO
197
A
PRO
137
A
HIS
141
A
HIS
81
A
LYS
146
A
LYS
86
A
CYS
173
A
CYS
113
A
LEU
176
A
LEU
116
A
VAL
181
A
VAL
121
A
MET
184
A
MET
124
152
trigonal
P 31 2 1