0.023294 0.000000 0.008709 0.000000 0.021877 0.000000 0.000000 0.000000 0.018806 0.00000 0.00000 0.00000 Wlodawer, A. Gustchina, A. Zdanov, A. Kervinen, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 110.50 90.00 42.930 45.710 56.770 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C32 H42 N2 O5 S 566.751 [2-(2-METHYL-PROPANE-2-SULFONYLMETHYL)-3-NAPHTHALEN-1-YL-PROPIONYL-VALINYL]-PHENYLALANINOL non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N S N 148 N O N 149 N O Y 150 N C Y 151 N C Y 152 N C Y 153 N C Y 154 N C Y 155 N C Y 156 N C Y 157 N C Y 158 N C Y 159 N C N 160 N O N 161 N C N 162 N N N 163 S C N 164 N C Y 165 N C Y 166 N C Y 167 N C Y 168 N C Y 169 N C Y 170 N C N 171 N N N 172 S C N 173 N C N 174 N O N 175 N C N 176 N C N 177 N C N 178 N C N 179 N O N 180 S C N 181 N C N 182 N C N 183 N C N 184 N C N 185 N C N 186 N C N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 S C N 234 N C N 235 N C N 236 N C N 237 N O N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N C N 281 N N N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N N N 299 S C N 300 N C N 301 N O N 302 N C N 303 N C N 304 N S N 305 N C N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N N N 319 S C N 320 N C N 321 N O N 322 N C Y 323 N C Y 324 N C Y 325 N C Y 326 N C Y 327 N C Y 328 N C N 329 N O N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N C N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N O N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 R C N 377 N O N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C Y 394 N C Y 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C N 400 N O N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N N N 414 S C N 415 N C N 416 N O N 417 N C N 418 N C N 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N doub N 140 N doub N 141 N sing N 142 N sing Y 143 N doub Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing Y 148 N doub N 149 N sing Y 150 N sing N 151 N sing Y 152 N doub Y 153 N sing Y 154 N sing Y 155 N doub N 156 N sing Y 157 N sing N 158 N sing Y 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing Y 175 N doub Y 176 N sing Y 177 N sing N 178 N sing Y 179 N doub N 180 N sing Y 181 N sing N 182 N sing Y 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing Y 319 N doub Y 320 N sing Y 321 N sing N 322 N sing Y 323 N doub N 324 N sing Y 325 N doub N 326 N sing Y 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N doub N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N doub N 384 N sing N 385 N sing N 386 N sing N 387 N sing Y 388 N doub Y 389 N sing Y 390 N sing N 391 N sing Y 392 N doub N 393 N sing Y 394 N doub N 395 N sing Y 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing US Protein Sci. PRCIEI 0795 0961-8368 5 1453 1465 8844837 Structure of equine infectious anemia virus proteinase complexed with an inhibitor. 1996 10.2210/pdb1fmb/pdb pdb_00001fmb 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 273 1 IMAGE PLATE 1995-04-04 MARRESEARCH GRAPHITE(002) M x-ray 1 1.5418 1.0 1.5418 11392.265 EIAV PROTEASE 3.4.23.16 I54G 1 man polymer 566.751 [2-(2-METHYL-PROPANE-2-SULFONYLMETHYL)-3-NAPHTHALEN-1-YL-PROPIONYL-VALINYL]-PHENYLALANINOL 1 syn non-polymer 18.015 water 128 nat water no no VTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGVGGNVETFSTPVTIKKKGRHIKTRM LVADIPVTILGRDILQDLGAKLVL VTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGVGGNVETFSTPVTIKKKGRHIKTRM LVADIPVTILGRDILQDLGAKLVL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Escherichia Escherichia coli sample 11665 Equine infectious anemia virus 511693 Escherichia coli BL21 BL21 PET-226 1 2.29 46.27 4.6 pH 4.6 database_2 pdbx_database_status pdbx_struct_special_symmetry struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Derived calculations Version format compliance Database references Derived calculations Other Data collection Refinement description 1 0 1996-10-14 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-11-03 1 4 2024-02-07 1 5 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1996-02-27 REL HYB [2-(2-METHYL-PROPANE-2-SULFONYLMETHYL)-3-NAPHTHALEN-1-YL-PROPIONYL-VALINYL]-PHENYLALANINOL HOH water homology-modeled structure derived from HIV-1 PR Other in silico model HYB 201 2 HYB HYB 201 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A HOH 322 3 HOH HOH 322 A HOH 323 3 HOH HOH 323 A HOH 324 3 HOH HOH 324 A HOH 325 3 HOH HOH 325 A HOH 326 3 HOH HOH 326 A HOH 327 3 HOH HOH 327 A HOH 328 3 HOH HOH 328 A HOH 329 3 HOH HOH 329 A HOH 330 3 HOH HOH 330 A HOH 331 3 HOH HOH 331 A HOH 332 3 HOH HOH 332 A HOH 333 3 HOH HOH 333 A HOH 334 3 HOH HOH 334 A HOH 335 3 HOH HOH 335 A HOH 336 3 HOH HOH 336 A HOH 337 3 HOH HOH 337 A HOH 338 3 HOH HOH 338 A HOH 339 3 HOH HOH 339 A HOH 340 3 HOH HOH 340 A HOH 341 3 HOH HOH 341 A HOH 342 3 HOH HOH 342 A HOH 343 3 HOH HOH 343 A HOH 344 3 HOH HOH 344 A HOH 345 3 HOH HOH 345 A HOH 346 3 HOH HOH 346 A HOH 347 3 HOH HOH 347 A HOH 348 3 HOH HOH 348 A HOH 349 3 HOH HOH 349 A HOH 350 3 HOH HOH 350 A HOH 351 3 HOH HOH 351 A HOH 352 3 HOH HOH 352 A HOH 353 3 HOH HOH 353 A HOH 354 3 HOH HOH 354 A HOH 355 3 HOH HOH 355 A HOH 356 3 HOH HOH 356 A HOH 357 3 HOH HOH 357 A HOH 358 3 HOH HOH 358 A HOH 359 3 HOH HOH 359 A HOH 360 3 HOH HOH 360 A HOH 361 3 HOH HOH 361 A HOH 362 3 HOH HOH 362 A HOH 363 3 HOH HOH 363 A HOH 364 3 HOH HOH 364 A HOH 365 3 HOH HOH 365 A HOH 366 3 HOH HOH 366 A HOH 367 3 HOH HOH 367 A HOH 368 3 HOH HOH 368 A HOH 369 3 HOH HOH 369 A HOH 370 3 HOH HOH 370 A HOH 371 3 HOH HOH 371 A HOH 372 3 HOH HOH 372 A HOH 373 3 HOH HOH 373 A HOH 374 3 HOH HOH 374 A HOH 375 3 HOH HOH 375 A HOH 376 3 HOH HOH 376 A HOH 377 3 HOH HOH 377 A HOH 378 3 HOH HOH 378 A HOH 379 3 HOH HOH 379 A HOH 380 3 HOH HOH 380 A HOH 381 3 HOH HOH 381 A HOH 382 3 HOH HOH 382 A HOH 383 3 HOH HOH 383 A HOH 384 3 HOH HOH 384 A HOH 385 3 HOH HOH 385 A HOH 386 3 HOH HOH 386 A HOH 387 3 HOH HOH 387 A HOH 388 3 HOH HOH 388 A HOH 389 3 HOH HOH 389 A HOH 390 3 HOH HOH 390 A HOH 391 3 HOH HOH 391 A HOH 392 3 HOH HOH 392 A HOH 393 3 HOH HOH 393 A HOH 394 3 HOH HOH 394 A HOH 395 3 HOH HOH 395 A HOH 396 3 HOH HOH 396 A HOH 397 3 HOH HOH 397 A HOH 398 3 HOH HOH 398 A HOH 399 3 HOH HOH 399 A HOH 400 3 HOH HOH 400 A HOH 401 3 HOH HOH 401 A HOH 402 3 HOH HOH 402 A HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 406 3 HOH HOH 406 A HOH 407 3 HOH HOH 407 A HOH 408 3 HOH HOH 408 A HOH 409 3 HOH HOH 409 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A HOH 412 3 HOH HOH 412 A HOH 413 3 HOH HOH 413 A HOH 414 3 HOH HOH 414 A HOH 415 3 HOH HOH 415 A HOH 416 3 HOH HOH 416 A HOH 417 3 HOH HOH 417 A HOH 418 3 HOH HOH 418 A HOH 419 3 HOH HOH 419 A HOH 420 3 HOH HOH 420 A HOH 421 3 HOH HOH 421 A HOH 422 3 HOH HOH 422 A HOH 423 3 HOH HOH 423 A HOH 424 3 HOH HOH 424 A HOH 425 3 HOH HOH 425 A HOH 426 3 HOH HOH 426 A HOH 427 3 HOH HOH 427 A HOH 428 3 HOH HOH 428 A VAL 1 n 1 VAL 1 A THR 2 n 2 THR 2 A TYR 3 n 3 TYR 3 A ASN 4 n 4 ASN 4 A LEU 5 n 5 LEU 5 A GLU 6 n 6 GLU 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A THR 10 n 10 THR 10 A THR 11 n 11 THR 11 A ILE 12 n 12 ILE 12 A VAL 13 n 13 VAL 13 A LEU 14 n 14 LEU 14 A ILE 15 n 15 ILE 15 A ASN 16 n 16 ASN 16 A ASP 17 n 17 ASP 17 A THR 18 n 18 THR 18 A PRO 19 n 19 PRO 19 A LEU 20 n 20 LEU 20 A ASN 21 n 21 ASN 21 A VAL 22 n 22 VAL 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A THR 30 n 30 THR 30 A SER 31 n 31 SER 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A THR 34 n 34 THR 34 A THR 35 n 35 THR 35 A ALA 36 n 36 ALA 36 A HIS 37 n 37 HIS 37 A TYR 38 n 38 TYR 38 A ASN 39 n 39 ASN 39 A ARG 40 n 40 ARG 40 A LEU 41 n 41 LEU 41 A LYS 42 n 42 LYS 42 A TYR 43 n 43 TYR 43 A ARG 44 n 44 ARG 44 A GLY 45 n 45 GLY 45 A ARG 46 n 46 ARG 46 A LYS 47 n 47 LYS 47 A TYR 48 n 48 TYR 48 A GLN 49 n 49 GLN 49 A GLY 50 n 50 GLY 50 A THR 51 n 51 THR 51 A GLY 52 n 52 GLY 52 A ILE 53 n 53 ILE 53 A GLY 54 n 54 GLY 54 A GLY 55 n 55 GLY 55 A VAL 56 n 56 VAL 56 A GLY 57 n 57 GLY 57 A GLY 58 n 58 GLY 58 A ASN 59 n 59 ASN 59 A VAL 60 n 60 VAL 60 A GLU 61 n 61 GLU 61 A THR 62 n 62 THR 62 A PHE 63 n 63 PHE 63 A SER 64 n 64 SER 64 A THR 65 n 65 THR 65 A PRO 66 n 66 PRO 66 A VAL 67 n 67 VAL 67 A THR 68 n 68 THR 68 A ILE 69 n 69 ILE 69 A LYS 70 n 70 LYS 70 A LYS 71 n 71 LYS 71 A LYS 72 n 72 LYS 72 A GLY 73 n 73 GLY 73 A ARG 74 n 74 ARG 74 A HIS 75 n 75 HIS 75 A ILE 76 n 76 ILE 76 A LYS 77 n 77 LYS 77 A THR 78 n 78 THR 78 A ARG 79 n 79 ARG 79 A MET 80 n 80 MET 80 A LEU 81 n 81 LEU 81 A VAL 82 n 82 VAL 82 A ALA 83 n 83 ALA 83 A ASP 84 n 84 ASP 84 A ILE 85 n 85 ILE 85 A PRO 86 n 86 PRO 86 A VAL 87 n 87 VAL 87 A THR 88 n 88 THR 88 A ILE 89 n 89 ILE 89 A LEU 90 n 90 LEU 90 A GLY 91 n 91 GLY 91 A ARG 92 n 92 ARG 92 A ASP 93 n 93 ASP 93 A ILE 94 n 94 ILE 94 A LEU 95 n 95 LEU 95 A GLN 96 n 96 GLN 96 A ASP 97 n 97 ASP 97 A LEU 98 n 98 LEU 98 A GLY 99 n 99 GLY 99 A ALA 100 n 100 ALA 100 A LYS 101 n 101 LYS 101 A LEU 102 n 102 LEU 102 A VAL 103 n 103 VAL 103 A LEU 104 n 104 LEU 104 A author_and_software_defined_assembly PISA,PQS 2 dimeric 5820 -36 9580 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O THR 11 A O THR 11 A N VAL 22 A N VAL 22 A O LEU 33 A O LEU 33 A N LEU 81 A N LEU 81 A O ARG 74 A O ARG 74 A N LYS 71 A N LYS 71 A O SER 64 A O SER 64 A N TYR 48 A N TYR 48 A O ILE 53 A O ILE 53 A N VAL 60 A N VAL 60 1 A HYB 201 B HYB 1 A HOH 301 C HOH 1 A CG ARG 46 A CG ARG 46 1 Y 1 A CD ARG 46 A CD ARG 46 1 Y 1 A NE ARG 46 A NE ARG 46 1 Y 1 A CZ ARG 46 A CZ ARG 46 1 Y 1 A NH1 ARG 46 A NH1 ARG 46 1 Y 1 A NH2 ARG 46 A NH2 ARG 46 1 Y 1 A CG LYS 70 A CG LYS 70 1 Y 1 A CD LYS 70 A CD LYS 70 1 Y 1 A CE LYS 70 A CE LYS 70 1 Y 1 A NZ LYS 70 A NZ LYS 70 1 Y 1 A A N O VAL HOH 1 371 1.95 1 A A O O HOH HOH 380 418 2.11 1 A A CB O ASN HOH 21 381 2.14 1 A A OE1 O GLN HOH 96 388 2.15 1 A A O O HOH HOH 314 336 2.16 1 8.42 1.20 123.30 131.72 A A A OE1 CD OE2 GLU GLU GLU 6 6 6 N 1 -3.88 0.50 120.30 116.42 A A A NE CZ NH1 ARG ARG ARG 8 8 8 N 1 -12.93 2.00 110.40 97.47 A A A CB CA C ASP ASP ASP 17 17 17 N 1 -4.55 0.60 121.00 116.45 A A A CB CG CD1 TYR TYR TYR 43 43 43 N 1 -4.42 0.50 120.30 115.88 A A A NE CZ NH1 ARG ARG ARG 44 44 44 N 1 -13.08 1.80 110.60 97.52 A A A N CA CB LYS LYS LYS 47 47 47 N 1 20.27 2.20 113.40 133.67 A A A CA CB CG LYS LYS LYS 47 47 47 N 1 -3.74 0.60 121.00 117.26 A A A CB CG CD1 TYR TYR TYR 48 48 48 N 1 13.30 2.10 122.30 135.60 A A A C N CA THR GLY GLY 51 52 52 Y 1 -3.22 0.50 120.30 117.08 A A A NE CZ NH1 ARG ARG ARG 74 74 74 N 1 3.42 0.50 120.30 123.72 A A A NE CZ NH1 ARG ARG ARG 79 79 79 N 1 3.01 0.50 120.30 123.31 A A A NE CZ NH2 ARG ARG ARG 92 92 92 N 1 5.51 0.90 118.30 123.81 A A A CB CG OD1 ASP ASP ASP 93 93 93 N 1 A A O O HOH HOH 312 326 2.03 1_555 3_555 19.12 THE TWO ORIENTATIONS OF THE INHIBITOR CREATED IN THE ACTIVE ENZYME OVERLAP WITH COMPLETE SUPERPOSITION AT THE PERIPHERY AND SOME DEVIATION IN THE CENTER. RESIDUES 56 - 57 HAVE BEEN MODELED WITH TWO ORIENTATIONS OF THEIR MAIN CHAINS, SINCE THEY FORM ALTERNATE HYDROGEN BONDS, DUE TO THE SAME DISORDER PHENOMENON. 0.1360000 1.8 20.0 8140 85. 1 3.0 MOLECULAR REPLACEMENT HIV-1 PROTEASE 1.8 20.0 128 959 40 0 791 0.014 0.017 0.046 0.044 0.043 0.059 1.916 2.500 2.567 3.500 3.720 4.000 5.328 7.000 0.018 0.022 0.177 0.180 0.207 0.500 0.450 0.500 0.382 0.500 3.4 3.5 19.1 14.0 32.4 12.0 1.80 20.0 1FMB 8443 1.0 0.0670000 1 6.1 88.5 model building X-PLOR refinement X-PLOR data reduction DENZO data scaling SCALEPACK phasing X-PLOR EIAV PROTEASE COMPLEXED WITH THE INHIBITOR HBY-793 1 N N 2 N N 3 N N THIS FILE CONTAINS ONLY A MONOMER, WHILE THE ACTIVE ENZYME IS A DIMER. IN ORDER TO CREATE A DIMERIC MOLECULE, CRYSTALLOGRAPHIC COORDINATES NEED TO BE TRANSFORMED TO (-X), Y, (-Z). A THR 35 A THR 35 HELX_P A ARG 40 A ARG 40 1 1 6 A ARG 92 A ARG 92 HELX_P A ASP 97 A ASP 97 1 2 6 HYDROLASE (ACID PROTEINASE) HYDROLASE (ACID PROTEINASE), RNA-DIRECTED DNA POLYMERASE, ASPARTYL PROTEASE, ENDONUCLEASE, POLYPROTEIN POL_EIAVC UNP 1 1 P32542 TAWTFLKAMQKCSKKREARGSREAPETNFPDTTEESAQQICCTRDSSDSKSVPRSERNKKGIQCQGEGSSRGSQPGQFVG VTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIIGVGGNVETFSTPVTIKKKGRHIKTRM LVADIPVTILGRDILQDLGAKLVLAQLSKEIKFRKIELKEGTMGPKIPQWPLTKEKLEGAKETVQRLLSEGKISEASDNN PYNSPIFVIKKRSGKWRLLQDLRELNKTVQVGTEISRGLPHPGGLIKCKHMTVLDIGDAYFTIPLDPEFRPYTAFTIPSI NHQEPDKRYVWKCLPQGFVLSPYIYQKTLQEILQPFRERYPEVQLYQYMDDLFVGSNGSKKQHKELIIELRAILQKGFET PDDKLQEVPPYSWLGYQLCPENWKVQKMQLDMVKNPTLNDVQKLMGNITWMSSGVPGLTVKHIAATTKGCLELNQKVIWT EEAQKELEENNEKIKNAQGLQYYNPEEEMLCEVEITKNYEATYVIKQSQGILWAGKKIMKANKGWSTVKNLMLLLQHVAT ESITRVGKCPTFKVPFTKEQVMWEMQKGWYYSWLPEIVYTHQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGIAAYVTS NGRTKQKRLGPVTHQVAERMAIQMALEDTRDKQVNIVTDSYYCWKNITEGLGLEGPQNPWWPIIQNIREKEIVYFAWVPG HKGIYGNQLADEAAKIKEEIMLAYQGTQIKEKRDEDAGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMA KQGLLINGGIIDEGYTGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGVFWVENIQ EAQDEHENWHTSPKILARNYKIPLTVAKQITQECPHCTKQGSGPAGCVMRSPNHWQADCTHLDNKIILHFVESNSGYIHA TLLSKENALCTSLAILEWARLFSPKSLHTDNGTNFVAEPVVNLLKFLKIAHTTGIPYHPESQGIVERANRTLKEKIQSHR DNTQTLEAALQLALITCNKGRESMGGQTPWEVFITNQAQVIHEKLLLQQAQSSKKFCFYKIPGEHDWKGPTRVLWKGDGA VVVNDEGKGIIAVPLTRTKLLIKPN 81 184 1FMB 1 104 P32542 A 1 1 104 1 ILE engineered mutation GLY 54 1FMB A P32542 UNP 134 54 2 4 2 anti-parallel parallel anti-parallel anti-parallel anti-parallel A THR 10 A THR 10 A ILE 15 A ILE 15 A THR 18 A THR 18 A LEU 23 A LEU 23 A VAL 32 A VAL 32 A THR 34 A THR 34 A ARG 74 A ARG 74 A ALA 83 A ALA 83 A PHE 63 A PHE 63 A LYS 71 A LYS 71 A LYS 47 A LYS 47 A GLN 49 A GLN 49 A ILE 53 A ILE 53 A GLY 55 A GLY 55 A GLY 58 A GLY 58 A VAL 60 A VAL 60 BINDING SITE FOR RESIDUE HYB A 201 A HYB 201 Software 32 A VAL 1 A VAL 1 32 3_555 A VAL 1 A VAL 1 32 4_455 A THR 2 A THR 2 32 3_555 A THR 2 A THR 2 32 4_455 A ARG 8 A ARG 8 32 2_555 A ARG 8 A ARG 8 32 1_555 A ASP 25 A ASP 25 32 2_555 A ASP 25 A ASP 25 32 1_555 A GLY 27 A GLY 27 32 1_555 A GLY 27 A GLY 27 32 2_555 A ALA 28 A ALA 28 32 1_555 A ALA 28 A ALA 28 32 2_555 A ASP 29 A ASP 29 32 2_555 A ASP 29 A ASP 29 32 1_555 A GLY 52 A GLY 52 32 1_555 A GLY 52 A GLY 52 32 2_555 A ILE 53 A ILE 53 32 2_555 A ILE 53 A ILE 53 32 1_555 A GLY 54 A GLY 54 32 2_555 A GLY 54 A GLY 54 32 1_555 A GLY 55 A GLY 55 32 2_555 A GLY 55 A GLY 55 32 1_555 A VAL 56 A VAL 56 32 2_555 A VAL 56 A VAL 56 32 1_555 A PRO 86 A PRO 86 32 1_555 A PRO 86 A PRO 86 32 2_555 A ILE 89 A ILE 89 32 2_555 A ILE 89 A ILE 89 32 1_555 A HOH 301 C HOH 32 2_555 A HOH 301 C HOH 32 1_555 A HOH 325 C HOH 32 2_555 A HOH 325 C HOH 32 1_555 5 C 1 2 1