1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Fan, P.
Suri, A.K.
Fiala, R.
Live, D.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C17 H21 N4 O9 P
456.344
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
N
N
74
N
C
N
75
N
O
N
76
N
N
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
N
Y
81
N
C
Y
82
N
C
Y
83
N
C
N
84
N
C
Y
85
N
C
N
86
N
C
Y
87
N
C
Y
88
N
C
N
89
N
N
N
90
N
C
N
91
N
C
N
92
S
C
N
93
N
O
N
94
S
C
N
95
N
O
N
96
R
C
N
97
N
O
N
98
N
C
N
99
N
O
N
100
N
P
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
O
N
126
N
P
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
R
C
N
136
N
O
N
137
R
C
Y
138
N
N
Y
139
N
C
Y
140
N
N
Y
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
C
N
146
N
N
N
147
N
N
Y
148
N
C
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
O
N
164
N
P
N
165
N
O
N
166
N
O
N
167
N
O
N
168
N
C
N
169
R
C
N
170
N
O
N
171
S
C
N
172
N
O
N
173
R
C
N
174
N
O
N
175
R
C
N
176
N
N
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
Y
87
N
doub
Y
88
N
sing
Y
89
N
sing
N
90
N
sing
N
91
N
sing
Y
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
Y
154
N
sing
Y
155
N
sing
Y
156
N
doub
N
157
N
sing
Y
158
N
sing
N
159
N
sing
Y
160
N
doub
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
258
480
500
10.1006/jmbi.1996.0263
8642604
Molecular recognition in the FMN-RNA aptamer complex.
1996
10.2210/pdb1fmn/pdb
pdb_00001fmn
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
11354.813
RNA (5'-R(*GP*GP*CP*GP*UP*GP*UP*AP*GP*GP *AP*UP*AP*UP*GP*CP*UP*UP*CP*GP*GP*CP*AP*GP*AP*AP*GP *GP*AP*CP*AP*CP*GP*CP*C)-3')
1
syn
polymer
456.344
FLAVIN MONONUCLEOTIDE
1
syn
non-polymer
no
no
GGCGUGUAGGAUAUGCUUCGGCAGAAGGACACGCC
GGCGUGUAGGAUAUGCUUCGGCAGAAGGACACGCC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
4.882
1
19
A
1
A
35
-3.993
A_G1:C35_A
1
-5.950
-0.137
0.112
0.075
-24.420
1
19
A
2
A
34
-13.141
A_G2:C34_A
2
27.826
-0.493
-0.875
-0.390
11.338
1
19
A
3
A
33
-10.672
A_C3:G33_A
3
30.081
0.703
-0.592
-0.303
-18.046
1
19
A
4
A
32
-3.337
A_G4:C32_A
4
-2.942
0.134
0.379
0.073
-2.295
1
20
A
5
A
31
-13.896
A_U5:A31_A
5
-7.344
0.140
0.079
0.063
-16.585
1
19
A
6
A
30
-11.173
A_G6:C30_A
6
-25.151
0.390
0.114
-0.041
-3.050
1
20
A
7
A
29
-9.780
A_U7:A29_A
7
-2.744
0.218
0.722
0.054
-4.942
1
A
8
A
28
-15.855
A_A8:G28_A
8
-15.449
-0.844
-0.100
1.879
-9.685
A
9
A
27
-22.641
A_G9:G27_A
9
-5.766
3.953
-0.265
1.498
7.433
4
24
A
12
A
25
-104.839
A_U12:A25_A
10
-8.704
4.377
0.042
-1.773
2.646
10
A
13
A
24
-17.889
A_A13:G24_A
11
-1.647
-7.153
0.127
-4.748
8.511
1
20
A
14
A
23
-2.975
A_U14:A23_A
12
-1.140
-0.423
0.026
0.046
-0.880
1
19
A
15
A
22
-4.117
A_G15:C22_A
13
-3.008
0.028
-0.059
0.085
7.135
1
19
A
16
A
21
-9.153
A_C16:G21_A
14
1.265
0.171
0.201
-0.059
0.946
6
A
17
A
20
-100.635
A_U17:G20_A
15
-23.886
0.568
1.049
-6.693
1.842
63.872
A
A
1
2
60.591
A
A
35
34
3.932
54.464
-2.370
-0.796
AA_G1G2:C34C35_AA
1
-11.247
12.513
32.754
-3.703
1.631
1.772
30.326
A
A
2
3
48.693
A
A
34
33
3.123
22.631
0.133
-0.418
AA_G2C3:G33C34_AA
2
-2.409
5.182
20.175
-4.937
-0.695
-0.267
69.497
A
A
3
4
74.041
A
A
33
32
4.166
66.436
1.056
-1.766
AA_C3G4:C32G33_AA
3
2.369
-2.641
21.535
-3.982
-0.840
2.343
35.094
A
A
4
5
14.161
A
A
32
31
2.853
8.424
-0.550
-1.325
AA_G4U5:A31C32_AA
4
5.682
-9.551
33.635
-3.222
1.603
2.440
40.584
A
A
5
6
22.405
A
A
31
30
3.326
15.190
0.561
-1.872
AA_U5G6:C30A31_AA
5
1.061
-1.565
37.731
-4.250
-0.700
2.297
35.217
A
A
6
7
12.557
A
A
30
29
2.768
7.506
1.009
-2.609
AA_G6U7:A29C30_AA
6
6.071
-10.156
33.908
-5.194
-0.954
2.589
30.412
A
A
7
8
8.928
A
A
29
28
2.935
4.623
0.220
-1.906
AA_U7A8:G28A29_AA
7
7.213
-13.929
29.208
-4.433
0.827
3.326
45.604
A
A
8
9
5.556
A
A
28
27
3.503
4.296
-0.018
-1.674
AA_A8G9:G27G28_AA
8
4.046
-5.233
45.241
-2.554
0.395
3.962
-15.326
A
A
12
13
2.271
A
A
25
24
3.336
-0.603
4.256
-1.458
AA_U12A13:G24A25_AA
9
-2.665
-10.045
-15.082
6.004
13.575
3.159
65.700
A
A
13
14
1.441
A
A
24
23
3.236
1.562
0.826
-0.835
AA_A13U14:A23G24_AA
10
-4.631
4.271
65.538
-0.832
-0.946
2.602
32.956
A
A
14
15
15.416
A
A
23
22
3.297
8.646
-0.929
-2.412
AA_U14G15:C22A23_AA
11
-1.210
2.157
31.809
-5.604
1.449
2.687
31.697
A
A
15
16
11.721
A
A
22
21
3.053
6.351
-0.787
-1.884
AA_G15C16:G21C22_AA
12
-3.074
5.673
30.921
-4.489
0.938
2.882
113.254
A
A
16
17
6.149
A
A
21
20
2.942
10.263
0.783
-1.221
AA_C16U17:G20G21_AA
13
4.006
-2.400
112.903
-0.834
-0.429
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
Data collection
1
0
1996-07-11
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
1
4
2024-05-22
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-12-04
REL
REL
FMN
FLAVIN MONONUCLEOTIDE
5
SEE REMARK
6.5
K
BRUNGER
refinement
X-PLOR
3.1
600
Varian
UNITYPLUS
FMN
36
2
FMN
FMN
36
A
G
1
n
1
G
1
A
G
2
n
2
G
2
A
C
3
n
3
C
3
A
G
4
n
4
G
4
A
U
5
n
5
U
5
A
G
6
n
6
G
6
A
U
7
n
7
U
7
A
A
8
n
8
A
8
A
G
9
n
9
G
9
A
G
10
n
10
G
10
A
A
11
n
11
A
11
A
U
12
n
12
U
12
A
A
13
n
13
A
13
A
U
14
n
14
U
14
A
G
15
n
15
G
15
A
C
16
n
16
C
16
A
U
17
n
17
U
17
A
U
18
n
18
U
18
A
C
19
n
19
C
19
A
G
20
n
20
G
20
A
G
21
n
21
G
21
A
C
22
n
22
C
22
A
A
23
n
23
A
23
A
G
24
n
24
G
24
A
A
25
n
25
A
25
A
A
26
n
26
A
26
A
G
27
n
27
G
27
A
G
28
n
28
G
28
A
A
29
n
29
A
29
A
C
30
n
30
C
30
A
A
31
n
31
A
31
A
C
32
n
32
C
32
A
G
33
n
33
G
33
A
C
34
n
34
C
34
A
C
35
n
35
C
35
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
C2'
FMN
36
WRONG HAND
1
A
C3'
FMN
36
WRONG HAND
1
A
C4'
FMN
36
WRONG HAND
2
A
C2'
FMN
36
WRONG HAND
2
A
C3'
FMN
36
WRONG HAND
2
A
C4'
FMN
36
WRONG HAND
3
A
C2'
FMN
36
WRONG HAND
3
A
C3'
FMN
36
WRONG HAND
3
A
C4'
FMN
36
WRONG HAND
4
A
C2'
FMN
36
WRONG HAND
4
A
C3'
FMN
36
WRONG HAND
4
A
C4'
FMN
36
WRONG HAND
5
A
C2'
FMN
36
WRONG HAND
5
A
C3'
FMN
36
WRONG HAND
5
A
C4'
FMN
36
WRONG HAND
1
5.94
0.70
119.90
125.84
A
A
A
N3
C2
N2
G
G
G
1
1
1
N
1
7.51
0.70
119.90
127.41
A
A
A
N3
C2
N2
G
G
G
2
2
2
N
1
4.22
0.60
118.90
123.12
A
A
A
N1
C2
O2
C
C
C
3
3
3
N
1
5.62
0.70
119.90
125.52
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
1
-3.68
0.60
123.90
120.22
A
A
A
N1
C2
N3
G
G
G
6
6
6
N
1
6.65
0.70
119.90
126.55
A
A
A
N3
C2
N2
G
G
G
6
6
6
N
1
-3.62
0.60
128.60
124.98
A
A
A
C5
C6
O6
G
G
G
6
6
6
N
1
7.44
0.60
118.60
126.04
A
A
A
N1
C6
N6
A
A
A
8
8
8
N
1
5.67
0.70
119.90
125.57
A
A
A
N3
C2
N2
G
G
G
9
9
9
N
1
5.73
0.70
119.90
125.63
A
A
A
N3
C2
N2
G
G
G
10
10
10
N
1
6.71
0.60
118.60
125.31
A
A
A
N1
C6
N6
A
A
A
11
11
11
N
1
7.33
0.60
118.60
125.93
A
A
A
N1
C6
N6
A
A
A
13
13
13
N
1
6.15
0.70
119.90
126.05
A
A
A
N3
C2
N2
G
G
G
15
15
15
N
1
6.36
0.70
119.90
126.26
A
A
A
N3
C2
N2
G
G
G
20
20
20
N
1
6.38
0.70
119.90
126.28
A
A
A
N3
C2
N2
G
G
G
21
21
21
N
1
3.66
0.60
119.90
123.56
A
A
A
N1
C6
O6
G
G
G
21
21
21
N
1
-3.99
0.60
128.60
124.61
A
A
A
C5
C6
O6
G
G
G
21
21
21
N
1
6.58
0.60
118.60
125.18
A
A
A
N1
C6
N6
A
A
A
23
23
23
N
1
7.22
0.70
119.90
127.12
A
A
A
N3
C2
N2
G
G
G
24
24
24
N
1
3.91
0.60
119.90
123.81
A
A
A
N1
C6
O6
G
G
G
24
24
24
N
1
7.40
0.60
118.60
126.00
A
A
A
N1
C6
N6
A
A
A
25
25
25
N
1
5.47
0.60
118.60
124.07
A
A
A
N1
C6
N6
A
A
A
26
26
26
N
1
6.49
0.70
119.90
126.39
A
A
A
N3
C2
N2
G
G
G
27
27
27
N
1
3.79
0.60
119.90
123.69
A
A
A
N1
C6
O6
G
G
G
27
27
27
N
1
5.69
0.70
119.90
125.59
A
A
A
N3
C2
N2
G
G
G
28
28
28
N
1
7.27
0.60
118.60
125.87
A
A
A
N1
C6
N6
A
A
A
29
29
29
N
1
4.74
0.70
118.00
122.74
A
A
A
N3
C4
N4
C
C
C
30
30
30
N
1
7.39
0.60
118.60
125.99
A
A
A
N1
C6
N6
A
A
A
31
31
31
N
1
-4.84
0.80
123.70
118.86
A
A
A
C5
C6
N6
A
A
A
31
31
31
N
1
-5.45
0.90
116.20
110.75
A
A
A
N1
C2
N2
G
G
G
33
33
33
N
1
8.97
0.70
119.90
128.87
A
A
A
N3
C2
N2
G
G
G
33
33
33
N
1
5.08
0.80
101.50
106.58
A
A
A
C3'
C2'
C1'
C
C
C
34
34
34
N
1
3.93
0.60
118.90
122.83
A
A
A
N1
C2
O2
C
C
C
34
34
34
N
2
6.82
0.70
119.90
126.72
A
A
A
N3
C2
N2
G
G
G
1
1
1
N
2
-3.72
0.60
123.90
120.18
A
A
A
N1
C2
N3
G
G
G
2
2
2
N
2
7.49
0.70
119.90
127.39
A
A
A
N3
C2
N2
G
G
G
2
2
2
N
2
3.71
0.60
119.90
123.61
A
A
A
N1
C6
O6
G
G
G
2
2
2
N
2
4.44
0.70
118.00
122.44
A
A
A
N3
C4
N4
C
C
C
3
3
3
N
2
6.00
0.70
119.90
125.90
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
2
5.93
0.70
119.90
125.83
A
A
A
N3
C2
N2
G
G
G
6
6
6
N
2
3.77
0.60
119.90
123.67
A
A
A
N1
C6
O6
G
G
G
6
6
6
N
2
-3.64
0.60
128.60
124.96
A
A
A
C5
C6
O6
G
G
G
6
6
6
N
2
4.98
0.70
108.50
113.48
A
A
A
O4'
C1'
N1
U
U
U
7
7
7
N
2
6.31
0.60
118.60
124.91
A
A
A
N1
C6
N6
A
A
A
8
8
8
N
2
6.83
0.70
119.90
126.73
A
A
A
N3
C2
N2
G
G
G
9
9
9
N
2
6.21
0.70
119.90
126.11
A
A
A
N3
C2
N2
G
G
G
10
10
10
N
2
5.94
0.60
118.60
124.54
A
A
A
N1
C6
N6
A
A
A
11
11
11
N
2
8.63
1.20
119.70
128.33
A
A
A
C3'
O3'
P
A
A
U
11
11
12
Y
2
6.95
0.60
118.60
125.55
A
A
A
N1
C6
N6
A
A
A
13
13
13
N
2
6.01
0.70
119.90
125.91
A
A
A
N3
C2
N2
G
G
G
15
15
15
N
2
3.88
0.60
119.90
123.78
A
A
A
N1
C6
O6
G
G
G
15
15
15
N
2
-4.04
0.60
128.60
124.56
A
A
A
C5
C6
O6
G
G
G
15
15
15
N
2
4.42
0.70
108.50
112.92
A
A
A
O4'
C1'
N1
C
C
C
16
16
16
N
2
4.46
0.70
118.00
122.46
A
A
A
N3
C4
N4
C
C
C
19
19
19
N
2
-4.69
0.70
109.70
105.01
A
A
A
C1'
O4'
C4'
G
G
G
20
20
20
N
2
5.40
0.70
119.90
125.30
A
A
A
N3
C2
N2
G
G
G
20
20
20
N
2
3.63
0.60
119.90
123.53
A
A
A
N1
C6
O6
G
G
G
20
20
20
N
2
-3.62
0.60
123.90
120.28
A
A
A
N1
C2
N3
G
G
G
21
21
21
N
2
6.68
0.70
119.90
126.58
A
A
A
N3
C2
N2
G
G
G
21
21
21
N
2
4.11
0.60
119.90
124.01
A
A
A
N1
C6
O6
G
G
G
21
21
21
N
2
-3.88
0.60
128.60
124.72
A
A
A
C5
C6
O6
G
G
G
21
21
21
N
2
-3.06
0.50
117.70
114.64
A
A
A
C5
C6
N1
A
A
A
23
23
23
N
2
7.35
0.60
118.60
125.95
A
A
A
N1
C6
N6
A
A
A
23
23
23
N
2
7.78
0.70
119.90
127.68
A
A
A
N3
C2
N2
G
G
G
24
24
24
N
2
6.25
0.60
118.60
124.85
A
A
A
N1
C6
N6
A
A
A
25
25
25
N
2
4.88
0.60
118.60
123.48
A
A
A
N1
C6
N6
A
A
A
26
26
26
N
2
6.19
0.70
119.90
126.09
A
A
A
N3
C2
N2
G
G
G
27
27
27
N
2
-3.62
0.60
128.60
124.98
A
A
A
C5
C6
O6
G
G
G
27
27
27
N
2
6.75
0.70
119.90
126.65
A
A
A
N3
C2
N2
G
G
G
28
28
28
N
2
7.44
0.60
118.60
126.04
A
A
A
N1
C6
N6
A
A
A
29
29
29
N
2
6.28
0.60
118.60
124.88
A
A
A
N1
C6
N6
A
A
A
31
31
31
N
2
7.71
0.70
119.90
127.61
A
A
A
N3
C2
N2
G
G
G
33
33
33
N
2
-3.89
0.60
128.60
124.71
A
A
A
C5
C6
O6
G
G
G
33
33
33
N
3
6.44
0.70
119.90
126.34
A
A
A
N3
C2
N2
G
G
G
1
1
1
N
3
3.67
0.60
119.90
123.57
A
A
A
N1
C6
O6
G
G
G
1
1
1
N
3
6.21
0.70
119.90
126.11
A
A
A
N3
C2
N2
G
G
G
2
2
2
N
3
6.05
0.70
119.90
125.95
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
3
3.60
0.60
119.90
123.50
A
A
A
N1
C6
O6
G
G
G
4
4
4
N
3
-3.63
0.60
123.90
120.27
A
A
A
N1
C2
N3
G
G
G
6
6
6
N
3
6.80
0.70
119.90
126.70
A
A
A
N3
C2
N2
G
G
G
6
6
6
N
3
3.93
0.60
119.90
123.83
A
A
A
N1
C6
O6
G
G
G
6
6
6
N
3
-4.06
0.60
128.60
124.54
A
A
A
C5
C6
O6
G
G
G
6
6
6
N
3
-4.23
0.70
109.70
105.47
A
A
A
C1'
O4'
C4'
A
A
A
8
8
8
N
3
6.80
0.60
118.60
125.40
A
A
A
N1
C6
N6
A
A
A
8
8
8
N
3
5.34
0.70
119.90
125.24
A
A
A
N3
C2
N2
G
G
G
9
9
9
N
3
3.68
0.60
119.90
123.58
A
A
A
N1
C6
O6
G
G
G
9
9
9
N
3
5.80
0.70
119.90
125.70
A
A
A
N3
C2
N2
G
G
G
10
10
10
N
3
6.87
0.60
118.60
125.47
A
A
A
N1
C6
N6
A
A
A
11
11
11
N
3
6.19
0.60
118.60
124.79
A
A
A
N1
C6
N6
A
A
A
13
13
13
N
3
6.31
0.70
119.90
126.21
A
A
A
N3
C2
N2
G
G
G
15
15
15
N
3
3.64
0.60
119.90
123.54
A
A
A
N1
C6
O6
G
G
G
15
15
15
N
3
4.72
0.70
108.50
113.22
A
A
A
O4'
C1'
N9
G
G
G
20
20
20
N
3
5.92
0.70
119.90
125.82
A
A
A
N3
C2
N2
G
G
G
20
20
20
N
3
6.56
0.70
119.90
126.46
A
A
A
N3
C2
N2
G
G
G
21
21
21
N
3
3.85
0.60
119.90
123.75
A
A
A
N1
C6
O6
G
G
G
21
21
21
N
3
-3.95
0.60
128.60
124.65
A
A
A
C5
C6
O6
G
G
G
21
21
21
N
3
-3.02
0.50
117.70
114.68
A
A
A
C5
C6
N1
A
A
A
23
23
23
N
3
5.82
0.60
118.60
124.42
A
A
A
N1
C6
N6
A
A
A
23
23
23
N
3
7.69
0.70
119.90
127.59
A
A
A
N3
C2
N2
G
G
G
24
24
24
N
3
3.84
0.60
119.90
123.74
A
A
A
N1
C6
O6
G
G
G
24
24
24
N
3
7.41
0.60
118.60
126.01
A
A
A
N1
C6
N6
A
A
A
25
25
25
N
3
-5.11
0.80
123.70
118.59
A
A
A
C5
C6
N6
A
A
A
25
25
25
N
3
6.13
0.60
118.60
124.73
A
A
A
N1
C6
N6
A
A
A
26
26
26
N
3
5.44
0.70
119.90
125.34
A
A
A
N3
C2
N2
G
G
G
27
27
27
N
3
6.14
0.70
119.90
126.04
A
A
A
N3
C2
N2
G
G
G
28
28
28
N
3
3.64
0.60
119.90
123.54
A
A
A
N1
C6
O6
G
G
G
28
28
28
N
3
7.15
0.60
118.60
125.75
A
A
A
N1
C6
N6
A
A
A
29
29
29
N
3
4.22
0.70
118.00
122.22
A
A
A
N3
C4
N4
C
C
C
30
30
30
N
3
7.15
0.60
118.60
125.75
A
A
A
N1
C6
N6
A
A
A
31
31
31
N
3
-4.84
0.80
123.70
118.86
A
A
A
C5
C6
N6
A
A
A
31
31
31
N
3
6.09
0.70
119.90
125.99
A
A
A
N3
C2
N2
G
G
G
33
33
33
N
3
3.63
0.60
119.90
123.53
A
A
A
N1
C6
O6
G
G
G
33
33
33
N
4
7.07
0.70
119.90
126.97
A
A
A
N3
C2
N2
G
G
G
1
1
1
N
4
6.82
0.70
119.90
126.72
A
A
A
N3
C2
N2
G
G
G
2
2
2
N
4
6.58
0.70
119.90
126.48
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
4
3.70
0.60
119.90
123.60
A
A
A
N1
C6
O6
G
G
G
4
4
4
N
4
-3.65
0.60
128.60
124.95
A
A
A
C5
C6
O6
G
G
G
4
4
4
N
4
6.13
0.70
119.90
126.03
A
A
A
N3
C2
N2
G
G
G
6
6
6
N
4
-3.62
0.60
128.60
124.98
A
A
A
C5
C6
O6
G
G
G
6
6
6
N
4
7.16
0.60
118.60
125.76
A
A
A
N1
C6
N6
A
A
A
8
8
8
N
4
6.73
0.70
119.90
126.63
A
A
A
N3
C2
N2
G
G
G
9
9
9
N
4
5.60
0.70
119.90
125.50
A
A
A
N3
C2
N2
G
G
G
10
10
10
N
4
3.74
0.60
119.90
123.64
A
A
A
N1
C6
O6
G
G
G
10
10
10
N
4
7.41
0.60
118.60
126.01
A
A
A
N1
C6
N6
A
A
A
11
11
11
N
4
6.87
0.60
118.60
125.47
A
A
A
N1
C6
N6
A
A
A
13
13
13
N
4
6.31
0.70
119.90
126.21
A
A
A
N3
C2
N2
G
G
G
15
15
15
N
4
3.89
0.60
119.90
123.79
A
A
A
N1
C6
O6
G
G
G
15
15
15
N
4
-3.88
0.60
128.60
124.72
A
A
A
C5
C6
O6
G
G
G
15
15
15
N
4
-4.33
0.70
109.70
105.37
A
A
A
C1'
O4'
C4'
G
G
G
20
20
20
N
4
5.79
0.70
119.90
125.69
A
A
A
N3
C2
N2
G
G
G
20
20
20
N
4
3.69
0.60
119.90
123.59
A
A
A
N1
C6
O6
G
G
G
20
20
20
N
4
-3.63
0.60
123.90
120.27
A
A
A
N1
C2
N3
G
G
G
21
21
21
N
4
6.42
0.70
119.90
126.32
A
A
A
N3
C2
N2
G
G
G
21
21
21
N
4
3.92
0.60
119.90
123.82
A
A
A
N1
C6
O6
G
G
G
21
21
21
N
4
-3.96
0.60
128.60
124.64
A
A
A
C5
C6
O6
G
G
G
21
21
21
N
4
5.95
0.60
118.60
124.55
A
A
A
N1
C6
N6
A
A
A
23
23
23
N
4
7.65
0.70
119.90
127.55
A
A
A
N3
C2
N2
G
G
G
24
24
24
N
4
3.80
0.60
119.90
123.70
A
A
A
N1
C6
O6
G
G
G
24
24
24
N
4
6.40
0.60
118.60
125.00
A
A
A
N1
C6
N6
A
A
A
25
25
25
N
4
5.75
0.60
118.60
124.35
A
A
A
N1
C6
N6
A
A
A
26
26
26
N
4
6.30
0.70
119.90
126.20
A
A
A
N3
C2
N2
G
G
G
27
27
27
N
4
6.80
0.70
119.90
126.70
A
A
A
N3
C2
N2
G
G
G
28
28
28
N
4
7.20
0.60
118.60
125.80
A
A
A
N1
C6
N6
A
A
A
29
29
29
N
4
6.98
0.60
118.60
125.58
A
A
A
N1
C6
N6
A
A
A
31
31
31
N
4
6.46
0.70
119.90
126.36
A
A
A
N3
C2
N2
G
G
G
33
33
33
N
4
3.93
0.60
119.90
123.83
A
A
A
N1
C6
O6
G
G
G
33
33
33
N
4
-3.75
0.60
128.60
124.85
A
A
A
C5
C6
O6
G
G
G
33
33
33
N
5
6.99
0.70
119.90
126.89
A
A
A
N3
C2
N2
G
G
G
1
1
1
N
5
3.65
0.60
119.90
123.55
A
A
A
N1
C6
O6
G
G
G
1
1
1
N
5
6.96
0.70
119.90
126.86
A
A
A
N3
C2
N2
G
G
G
2
2
2
N
5
3.69
0.60
119.90
123.59
A
A
A
N1
C6
O6
G
G
G
2
2
2
N
5
-3.69
0.60
128.60
124.91
A
A
A
C5
C6
O6
G
G
G
2
2
2
N
5
4.38
0.70
118.00
122.38
A
A
A
N3
C4
N4
C
C
C
3
3
3
N
5
6.79
0.70
119.90
126.69
A
A
A
N3
C2
N2
G
G
G
4
4
4
N
5
3.68
0.60
119.90
123.58
A
A
A
N1
C6
O6
G
G
G
4
4
4
N
5
6.30
0.70
119.90
126.20
A
A
A
N3
C2
N2
G
G
G
6
6
6
N
5
3.94
0.60
119.90
123.84
A
A
A
N1
C6
O6
G
G
G
6
6
6
N
5
-4.20
0.60
128.60
124.40
A
A
A
C5
C6
O6
G
G
G
6
6
6
N
5
4.29
0.70
108.50
112.79
A
A
A
O4'
C1'
N1
U
U
U
7
7
7
N
5
6.88
0.60
118.60
125.48
A
A
A
N1
C6
N6
A
A
A
8
8
8
N
5
6.94
0.70
119.90
126.84
A
A
A
N3
C2
N2
G
G
G
9
9
9
N
5
6.55
0.70
119.90
126.45
A
A
A
N3
C2
N2
G
G
G
10
10
10
N
5
6.97
0.60
118.60
125.57
A
A
A
N1
C6
N6
A
A
A
11
11
11
N
5
6.73
0.60
118.60
125.33
A
A
A
N1
C6
N6
A
A
A
13
13
13
N
5
6.47
0.70
119.90
126.37
A
A
A
N3
C2
N2
G
G
G
15
15
15
N
5
3.81
0.60
119.90
123.71
A
A
A
N1
C6
O6
G
G
G
15
15
15
N
5
-3.72
0.60
128.60
124.88
A
A
A
C5
C6
O6
G
G
G
15
15
15
N
5
6.80
0.70
119.90
126.70
A
A
A
N3
C2
N2
G
G
G
20
20
20
N
5
6.01
0.70
119.90
125.91
A
A
A
N3
C2
N2
G
G
G
21
21
21
N
5
3.76
0.60
119.90
123.66
A
A
A
N1
C6
O6
G
G
G
21
21
21
N
5
-3.80
0.60
128.60
124.80
A
A
A
C5
C6
O6
G
G
G
21
21
21
N
5
6.36
0.60
118.60
124.96
A
A
A
N1
C6
N6
A
A
A
23
23
23
N
5
7.21
0.70
119.90
127.11
A
A
A
N3
C2
N2
G
G
G
24
24
24
N
5
4.15
0.60
119.90
124.05
A
A
A
N1
C6
O6
G
G
G
24
24
24
N
5
-3.84
0.60
128.60
124.76
A
A
A
C5
C6
O6
G
G
G
24
24
24
N
5
7.13
0.60
118.60
125.73
A
A
A
N1
C6
N6
A
A
A
25
25
25
N
5
5.36
0.60
118.60
123.96
A
A
A
N1
C6
N6
A
A
A
26
26
26
N
5
6.79
0.70
119.90
126.69
A
A
A
N3
C2
N2
G
G
G
27
27
27
N
5
6.80
0.70
108.50
115.30
A
A
A
O4'
C1'
N9
G
G
G
28
28
28
N
5
5.76
0.70
119.90
125.66
A
A
A
N3
C2
N2
G
G
G
28
28
28
N
5
4.37
0.70
108.50
112.87
A
A
A
O4'
C1'
N9
A
A
A
29
29
29
N
5
7.20
0.60
118.60
125.80
A
A
A
N1
C6
N6
A
A
A
29
29
29
N
5
5.26
0.70
118.00
123.26
A
A
A
N3
C4
N4
C
C
C
30
30
30
N
5
6.84
0.60
118.60
125.44
A
A
A
N1
C6
N6
A
A
A
31
31
31
N
5
6.61
0.70
119.90
126.51
A
A
A
N3
C2
N2
G
G
G
33
33
33
N
5
3.96
0.60
119.90
123.86
A
A
A
N1
C6
O6
G
G
G
33
33
33
N
5
-3.80
0.60
128.60
124.80
A
A
A
C5
C6
O6
G
G
G
33
33
33
N
1
A
A
C2
N3
U
U
5
5
0.044
0.007
1.373
1.417
N
1
A
A
C2
N3
U
U
7
7
0.045
0.007
1.373
1.418
N
1
A
A
N9
C4
A
A
13
13
0.040
0.006
1.374
1.414
N
1
A
A
C2
N3
U
U
14
14
0.045
0.007
1.373
1.418
N
1
A
A
C2
N3
U
U
17
17
0.045
0.007
1.373
1.418
N
1
A
A
C2
N3
U
U
18
18
0.050
0.007
1.373
1.423
N
1
A
A
C2
N3
G
G
33
33
0.050
0.008
1.323
1.373
N
2
A
A
C5
N7
G
G
2
2
-0.038
0.006
1.388
1.350
N
2
A
A
C2
N3
U
U
5
5
0.042
0.007
1.373
1.415
N
2
A
A
N1
C2
U
U
12
12
0.058
0.009
1.381
1.439
N
2
A
A
C2
N3
U
U
12
12
0.043
0.007
1.373
1.416
N
2
A
A
C2
N3
U
U
14
14
0.045
0.007
1.373
1.418
N
2
A
A
C2
N3
U
U
17
17
0.043
0.007
1.373
1.416
N
2
A
A
C2
N3
U
U
18
18
0.048
0.007
1.373
1.421
N
2
A
A
C8
N9
G
G
20
20
-0.043
0.007
1.374
1.331
N
2
A
A
N9
C4
A
A
31
31
0.036
0.006
1.374
1.410
N
2
A
A
C2
N3
G
G
33
33
0.051
0.008
1.323
1.374
N
3
A
A
C2
N3
U
U
5
5
0.046
0.007
1.373
1.419
N
3
A
A
C2
N3
U
U
7
7
0.042
0.007
1.373
1.415
N
3
A
A
N9
C4
A
A
8
8
0.037
0.006
1.374
1.411
N
3
A
A
N1
C2
U
U
12
12
0.057
0.009
1.381
1.438
N
3
A
A
C2
N3
U
U
12
12
0.042
0.007
1.373
1.415
N
3
A
A
N9
C4
A
A
13
13
0.037
0.006
1.374
1.411
N
3
A
A
C2
N3
U
U
17
17
0.044
0.007
1.373
1.417
N
3
A
A
C2
N3
U
U
18
18
0.050
0.007
1.373
1.423
N
3
A
A
N9
C4
A
A
29
29
0.037
0.006
1.374
1.411
N
4
A
A
C2
N3
U
U
5
5
0.046
0.007
1.373
1.419
N
4
A
A
C2
N3
U
U
14
14
0.044
0.007
1.373
1.417
N
4
A
A
C2
N3
U
U
17
17
0.044
0.007
1.373
1.417
N
4
A
A
C2
N3
U
U
18
18
0.050
0.007
1.373
1.423
N
4
A
A
C8
N9
G
G
20
20
-0.052
0.007
1.374
1.322
N
4
A
A
N9
C4
A
A
29
29
0.037
0.006
1.374
1.411
N
5
A
A
C2
N3
U
U
7
7
0.044
0.007
1.373
1.417
N
5
A
A
N9
C4
A
A
13
13
0.038
0.006
1.374
1.412
N
5
A
A
C2
N3
U
U
14
14
0.044
0.007
1.373
1.417
N
5
A
A
C2
N3
U
U
17
17
0.045
0.007
1.373
1.418
N
5
A
A
C2
N3
U
U
18
18
0.050
0.007
1.373
1.423
N
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
SOLUTION STRUCTURE OF FMN-RNA APTAMER COMPLEX, NMR, 5 STRUCTURES
1
N
N
2
N
N
hydrog
G-C PAIR
A
G
1
A
O6
G
1
1_555
A
C
32
A
N4
C
32
1_555
hydrog
WATSON-CRICK
A
G
1
A
N1
G
1
1_555
A
C
35
A
N3
C
35
1_555
hydrog
WATSON-CRICK
A
G
1
A
N2
G
1
1_555
A
C
35
A
O2
C
35
1_555
hydrog
WATSON-CRICK
A
G
1
A
O6
G
1
1_555
A
C
35
A
N4
C
35
1_555
hydrog
WATSON-CRICK
A
G
2
A
N1
G
2
1_555
A
C
34
A
N3
C
34
1_555
hydrog
WATSON-CRICK
A
G
2
A
N2
G
2
1_555
A
C
34
A
O2
C
34
1_555
hydrog
WATSON-CRICK
A
G
2
A
O6
G
2
1_555
A
C
34
A
N4
C
34
1_555
hydrog
WATSON-CRICK
A
C
3
A
N3
C
3
1_555
A
G
33
A
N1
G
33
1_555
hydrog
WATSON-CRICK
A
C
3
A
N4
C
3
1_555
A
G
33
A
O6
G
33
1_555
hydrog
WATSON-CRICK
A
C
3
A
O2
C
3
1_555
A
G
33
A
N2
G
33
1_555
hydrog
G-A MISPAIR
A
G
4
A
O6
G
4
1_555
A
A
31
A
N6
A
31
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
32
A
N3
C
32
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
32
A
O2
C
32
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
32
A
N4
C
32
1_555
hydrog
WATSON-CRICK
A
U
5
A
N3
U
5
1_555
A
A
31
A
N1
A
31
1_555
hydrog
WATSON-CRICK
A
U
5
A
O4
U
5
1_555
A
A
31
A
N6
A
31
1_555
hydrog
WATSON-CRICK
A
G
6
A
N1
G
6
1_555
A
C
30
A
N3
C
30
1_555
hydrog
WATSON-CRICK
A
G
6
A
N2
G
6
1_555
A
C
30
A
O2
C
30
1_555
hydrog
WATSON-CRICK
A
G
6
A
O6
G
6
1_555
A
C
30
A
N4
C
30
1_555
hydrog
WATSON-CRICK
A
U
7
A
N3
U
7
1_555
A
A
29
A
N1
A
29
1_555
hydrog
WATSON-CRICK
A
U
7
A
O4
U
7
1_555
A
A
29
A
N6
A
29
1_555
hydrog
A-G MISPAIR
A
A
8
A
N1
A
8
1_555
A
G
28
A
N1
G
28
1_555
hydrog
G-G MISPAIR
A
G
9
A
N1
G
9
1_555
A
G
27
A
O6
G
27
1_555
hydrog
G-U MISPAIR
A
G
10
A
N2
G
10
1_555
A
U
12
A
O4
U
12
1_555
hydrog
REVERSED HOOGSTEEN
A
U
12
A
N3
U
12
1_555
A
A
25
A
N7
A
25
1_555
hydrog
REVERSED HOOGSTEEN
A
U
12
A
O2
U
12
1_555
A
A
25
A
N6
A
25
1_555
hydrog
A-G MISPAIR
A
A
13
A
N7
A
13
1_555
A
G
24
A
N2
G
24
1_555
hydrog
WATSON-CRICK
A
U
14
A
N3
U
14
1_555
A
A
23
A
N1
A
23
1_555
hydrog
WATSON-CRICK
A
U
14
A
O4
U
14
1_555
A
A
23
A
N6
A
23
1_555
hydrog
WATSON-CRICK
A
G
15
A
N1
G
15
1_555
A
C
22
A
N3
C
22
1_555
hydrog
WATSON-CRICK
A
G
15
A
N2
G
15
1_555
A
C
22
A
O2
C
22
1_555
hydrog
WATSON-CRICK
A
G
15
A
O6
G
15
1_555
A
C
22
A
N4
C
22
1_555
hydrog
WATSON-CRICK
A
C
16
A
N3
C
16
1_555
A
G
21
A
N1
G
21
1_555
hydrog
WATSON-CRICK
A
C
16
A
N4
C
16
1_555
A
G
21
A
O6
G
21
1_555
hydrog
WATSON-CRICK
A
C
16
A
O2
C
16
1_555
A
G
21
A
N2
G
21
1_555
hydrog
U-G MISPAIR
A
U
17
A
O2
U
17
1_555
A
G
20
A
N2
G
20
1_555
RNA
FMN-RNA COMPLEX, FMN-ADENINE PAIRING, FMN INTERCALATION, BASE TRIPLE PLATFORM, BASE PAIR MISMATCHES, RNA
1FMN
PDB
1
1FMN
1
35
1FMN
1
35
1FMN
A
1
1
35
BINDING SITE FOR RESIDUE FMN A 36
A
FMN
36
Software
6
A
G
9
A
G
9
6
1_555
A
G
10
A
G
10
6
1_555
A
U
12
A
U
12
6
1_555
A
A
25
A
A
25
6
1_555
A
A
26
A
A
26
6
1_555
A
G
27
A
G
27
6
1_555
1
P 1