1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Fan, P. Suri, A.K. Fiala, R. Live, D. Patel, D.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C17 H21 N4 O9 P 456.344 FLAVIN MONONUCLEOTIDE RIBOFLAVIN MONOPHOSPHATE non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N N N 74 N C N 75 N O N 76 N N N 77 N C N 78 N O N 79 N C N 80 N N Y 81 N C Y 82 N C Y 83 N C N 84 N C Y 85 N C N 86 N C Y 87 N C Y 88 N C N 89 N N N 90 N C N 91 N C N 92 S C N 93 N O N 94 S C N 95 N O N 96 R C N 97 N O N 98 N C N 99 N O N 100 N P N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N O N 126 N P N 127 N O N 128 N O N 129 N O N 130 N C N 131 R C N 132 N O N 133 S C N 134 N O N 135 R C N 136 N O N 137 R C Y 138 N N Y 139 N C Y 140 N N Y 141 N C N 142 N C N 143 N O N 144 N N N 145 N C N 146 N N N 147 N N Y 148 N C N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N O N 164 N P N 165 N O N 166 N O N 167 N O N 168 N C N 169 R C N 170 N O N 171 S C N 172 N O N 173 R C N 174 N O N 175 R C N 176 N N N 177 N C N 178 N O N 179 N N N 180 N C N 181 N O N 182 N C N 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N doub N 85 N sing N 86 N sing Y 87 N doub Y 88 N sing Y 89 N sing N 90 N sing N 91 N sing Y 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing N 98 N sing N 99 N sing N 100 N sing Y 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing Y 154 N sing Y 155 N sing Y 156 N doub N 157 N sing Y 158 N sing N 159 N sing Y 160 N doub N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N doub N 203 N sing N 204 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 258 480 500 10.1006/jmbi.1996.0263 8642604 Molecular recognition in the FMN-RNA aptamer complex. 1996 10.2210/pdb1fmn/pdb pdb_00001fmn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11354.813 RNA (5'-R(*GP*GP*CP*GP*UP*GP*UP*AP*GP*GP *AP*UP*AP*UP*GP*CP*UP*UP*CP*GP*GP*CP*AP*GP*AP*AP*GP *GP*AP*CP*AP*CP*GP*CP*C)-3') 1 syn polymer 456.344 FLAVIN MONONUCLEOTIDE 1 syn non-polymer no no GGCGUGUAGGAUAUGCUUCGGCAGAAGGACACGCC GGCGUGUAGGAUAUGCUUCGGCAGAAGGACACGCC A polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 4.882 1 19 A 1 A 35 -3.993 A_G1:C35_A 1 -5.950 -0.137 0.112 0.075 -24.420 1 19 A 2 A 34 -13.141 A_G2:C34_A 2 27.826 -0.493 -0.875 -0.390 11.338 1 19 A 3 A 33 -10.672 A_C3:G33_A 3 30.081 0.703 -0.592 -0.303 -18.046 1 19 A 4 A 32 -3.337 A_G4:C32_A 4 -2.942 0.134 0.379 0.073 -2.295 1 20 A 5 A 31 -13.896 A_U5:A31_A 5 -7.344 0.140 0.079 0.063 -16.585 1 19 A 6 A 30 -11.173 A_G6:C30_A 6 -25.151 0.390 0.114 -0.041 -3.050 1 20 A 7 A 29 -9.780 A_U7:A29_A 7 -2.744 0.218 0.722 0.054 -4.942 1 A 8 A 28 -15.855 A_A8:G28_A 8 -15.449 -0.844 -0.100 1.879 -9.685 A 9 A 27 -22.641 A_G9:G27_A 9 -5.766 3.953 -0.265 1.498 7.433 4 24 A 12 A 25 -104.839 A_U12:A25_A 10 -8.704 4.377 0.042 -1.773 2.646 10 A 13 A 24 -17.889 A_A13:G24_A 11 -1.647 -7.153 0.127 -4.748 8.511 1 20 A 14 A 23 -2.975 A_U14:A23_A 12 -1.140 -0.423 0.026 0.046 -0.880 1 19 A 15 A 22 -4.117 A_G15:C22_A 13 -3.008 0.028 -0.059 0.085 7.135 1 19 A 16 A 21 -9.153 A_C16:G21_A 14 1.265 0.171 0.201 -0.059 0.946 6 A 17 A 20 -100.635 A_U17:G20_A 15 -23.886 0.568 1.049 -6.693 1.842 63.872 A A 1 2 60.591 A A 35 34 3.932 54.464 -2.370 -0.796 AA_G1G2:C34C35_AA 1 -11.247 12.513 32.754 -3.703 1.631 1.772 30.326 A A 2 3 48.693 A A 34 33 3.123 22.631 0.133 -0.418 AA_G2C3:G33C34_AA 2 -2.409 5.182 20.175 -4.937 -0.695 -0.267 69.497 A A 3 4 74.041 A A 33 32 4.166 66.436 1.056 -1.766 AA_C3G4:C32G33_AA 3 2.369 -2.641 21.535 -3.982 -0.840 2.343 35.094 A A 4 5 14.161 A A 32 31 2.853 8.424 -0.550 -1.325 AA_G4U5:A31C32_AA 4 5.682 -9.551 33.635 -3.222 1.603 2.440 40.584 A A 5 6 22.405 A A 31 30 3.326 15.190 0.561 -1.872 AA_U5G6:C30A31_AA 5 1.061 -1.565 37.731 -4.250 -0.700 2.297 35.217 A A 6 7 12.557 A A 30 29 2.768 7.506 1.009 -2.609 AA_G6U7:A29C30_AA 6 6.071 -10.156 33.908 -5.194 -0.954 2.589 30.412 A A 7 8 8.928 A A 29 28 2.935 4.623 0.220 -1.906 AA_U7A8:G28A29_AA 7 7.213 -13.929 29.208 -4.433 0.827 3.326 45.604 A A 8 9 5.556 A A 28 27 3.503 4.296 -0.018 -1.674 AA_A8G9:G27G28_AA 8 4.046 -5.233 45.241 -2.554 0.395 3.962 -15.326 A A 12 13 2.271 A A 25 24 3.336 -0.603 4.256 -1.458 AA_U12A13:G24A25_AA 9 -2.665 -10.045 -15.082 6.004 13.575 3.159 65.700 A A 13 14 1.441 A A 24 23 3.236 1.562 0.826 -0.835 AA_A13U14:A23G24_AA 10 -4.631 4.271 65.538 -0.832 -0.946 2.602 32.956 A A 14 15 15.416 A A 23 22 3.297 8.646 -0.929 -2.412 AA_U14G15:C22A23_AA 11 -1.210 2.157 31.809 -5.604 1.449 2.687 31.697 A A 15 16 11.721 A A 22 21 3.053 6.351 -0.787 -1.884 AA_G15C16:G21C22_AA 12 -3.074 5.673 30.921 -4.489 0.938 2.882 113.254 A A 16 17 6.149 A A 21 20 2.942 10.263 0.783 -1.221 AA_C16U17:G20G21_AA 13 4.006 -2.400 112.903 -0.834 -0.429 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Database references Derived calculations Other Data collection 1 0 1996-07-11 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-23 1 4 2024-05-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-12-04 REL REL FMN FLAVIN MONONUCLEOTIDE 5 SEE REMARK 6.5 K BRUNGER refinement X-PLOR 3.1 600 Varian UNITYPLUS FMN 36 2 FMN FMN 36 A G 1 n 1 G 1 A G 2 n 2 G 2 A C 3 n 3 C 3 A G 4 n 4 G 4 A U 5 n 5 U 5 A G 6 n 6 G 6 A U 7 n 7 U 7 A A 8 n 8 A 8 A G 9 n 9 G 9 A G 10 n 10 G 10 A A 11 n 11 A 11 A U 12 n 12 U 12 A A 13 n 13 A 13 A U 14 n 14 U 14 A G 15 n 15 G 15 A C 16 n 16 C 16 A U 17 n 17 U 17 A U 18 n 18 U 18 A C 19 n 19 C 19 A G 20 n 20 G 20 A G 21 n 21 G 21 A C 22 n 22 C 22 A A 23 n 23 A 23 A G 24 n 24 G 24 A A 25 n 25 A 25 A A 26 n 26 A 26 A G 27 n 27 G 27 A G 28 n 28 G 28 A A 29 n 29 A 29 A C 30 n 30 C 30 A A 31 n 31 A 31 A C 32 n 32 C 32 A G 33 n 33 G 33 A C 34 n 34 C 34 A C 35 n 35 C 35 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A C2' FMN 36 WRONG HAND 1 A C3' FMN 36 WRONG HAND 1 A C4' FMN 36 WRONG HAND 2 A C2' FMN 36 WRONG HAND 2 A C3' FMN 36 WRONG HAND 2 A C4' FMN 36 WRONG HAND 3 A C2' FMN 36 WRONG HAND 3 A C3' FMN 36 WRONG HAND 3 A C4' FMN 36 WRONG HAND 4 A C2' FMN 36 WRONG HAND 4 A C3' FMN 36 WRONG HAND 4 A C4' FMN 36 WRONG HAND 5 A C2' FMN 36 WRONG HAND 5 A C3' FMN 36 WRONG HAND 5 A C4' FMN 36 WRONG HAND 1 5.94 0.70 119.90 125.84 A A A N3 C2 N2 G G G 1 1 1 N 1 7.51 0.70 119.90 127.41 A A A N3 C2 N2 G G G 2 2 2 N 1 4.22 0.60 118.90 123.12 A A A N1 C2 O2 C C C 3 3 3 N 1 5.62 0.70 119.90 125.52 A A A N3 C2 N2 G G G 4 4 4 N 1 -3.68 0.60 123.90 120.22 A A A N1 C2 N3 G G G 6 6 6 N 1 6.65 0.70 119.90 126.55 A A A N3 C2 N2 G G G 6 6 6 N 1 -3.62 0.60 128.60 124.98 A A A C5 C6 O6 G G G 6 6 6 N 1 7.44 0.60 118.60 126.04 A A A N1 C6 N6 A A A 8 8 8 N 1 5.67 0.70 119.90 125.57 A A A N3 C2 N2 G G G 9 9 9 N 1 5.73 0.70 119.90 125.63 A A A N3 C2 N2 G G G 10 10 10 N 1 6.71 0.60 118.60 125.31 A A A N1 C6 N6 A A A 11 11 11 N 1 7.33 0.60 118.60 125.93 A A A N1 C6 N6 A A A 13 13 13 N 1 6.15 0.70 119.90 126.05 A A A N3 C2 N2 G G G 15 15 15 N 1 6.36 0.70 119.90 126.26 A A A N3 C2 N2 G G G 20 20 20 N 1 6.38 0.70 119.90 126.28 A A A N3 C2 N2 G G G 21 21 21 N 1 3.66 0.60 119.90 123.56 A A A N1 C6 O6 G G G 21 21 21 N 1 -3.99 0.60 128.60 124.61 A A A C5 C6 O6 G G G 21 21 21 N 1 6.58 0.60 118.60 125.18 A A A N1 C6 N6 A A A 23 23 23 N 1 7.22 0.70 119.90 127.12 A A A N3 C2 N2 G G G 24 24 24 N 1 3.91 0.60 119.90 123.81 A A A N1 C6 O6 G G G 24 24 24 N 1 7.40 0.60 118.60 126.00 A A A N1 C6 N6 A A A 25 25 25 N 1 5.47 0.60 118.60 124.07 A A A N1 C6 N6 A A A 26 26 26 N 1 6.49 0.70 119.90 126.39 A A A N3 C2 N2 G G G 27 27 27 N 1 3.79 0.60 119.90 123.69 A A A N1 C6 O6 G G G 27 27 27 N 1 5.69 0.70 119.90 125.59 A A A N3 C2 N2 G G G 28 28 28 N 1 7.27 0.60 118.60 125.87 A A A N1 C6 N6 A A A 29 29 29 N 1 4.74 0.70 118.00 122.74 A A A N3 C4 N4 C C C 30 30 30 N 1 7.39 0.60 118.60 125.99 A A A N1 C6 N6 A A A 31 31 31 N 1 -4.84 0.80 123.70 118.86 A A A C5 C6 N6 A A A 31 31 31 N 1 -5.45 0.90 116.20 110.75 A A A N1 C2 N2 G G G 33 33 33 N 1 8.97 0.70 119.90 128.87 A A A N3 C2 N2 G G G 33 33 33 N 1 5.08 0.80 101.50 106.58 A A A C3' C2' C1' C C C 34 34 34 N 1 3.93 0.60 118.90 122.83 A A A N1 C2 O2 C C C 34 34 34 N 2 6.82 0.70 119.90 126.72 A A A N3 C2 N2 G G G 1 1 1 N 2 -3.72 0.60 123.90 120.18 A A A N1 C2 N3 G G G 2 2 2 N 2 7.49 0.70 119.90 127.39 A A A N3 C2 N2 G G G 2 2 2 N 2 3.71 0.60 119.90 123.61 A A A N1 C6 O6 G G G 2 2 2 N 2 4.44 0.70 118.00 122.44 A A A N3 C4 N4 C C C 3 3 3 N 2 6.00 0.70 119.90 125.90 A A A N3 C2 N2 G G G 4 4 4 N 2 5.93 0.70 119.90 125.83 A A A N3 C2 N2 G G G 6 6 6 N 2 3.77 0.60 119.90 123.67 A A A N1 C6 O6 G G G 6 6 6 N 2 -3.64 0.60 128.60 124.96 A A A C5 C6 O6 G G G 6 6 6 N 2 4.98 0.70 108.50 113.48 A A A O4' C1' N1 U U U 7 7 7 N 2 6.31 0.60 118.60 124.91 A A A N1 C6 N6 A A A 8 8 8 N 2 6.83 0.70 119.90 126.73 A A A N3 C2 N2 G G G 9 9 9 N 2 6.21 0.70 119.90 126.11 A A A N3 C2 N2 G G G 10 10 10 N 2 5.94 0.60 118.60 124.54 A A A N1 C6 N6 A A A 11 11 11 N 2 8.63 1.20 119.70 128.33 A A A C3' O3' P A A U 11 11 12 Y 2 6.95 0.60 118.60 125.55 A A A N1 C6 N6 A A A 13 13 13 N 2 6.01 0.70 119.90 125.91 A A A N3 C2 N2 G G G 15 15 15 N 2 3.88 0.60 119.90 123.78 A A A N1 C6 O6 G G G 15 15 15 N 2 -4.04 0.60 128.60 124.56 A A A C5 C6 O6 G G G 15 15 15 N 2 4.42 0.70 108.50 112.92 A A A O4' C1' N1 C C C 16 16 16 N 2 4.46 0.70 118.00 122.46 A A A N3 C4 N4 C C C 19 19 19 N 2 -4.69 0.70 109.70 105.01 A A A C1' O4' C4' G G G 20 20 20 N 2 5.40 0.70 119.90 125.30 A A A N3 C2 N2 G G G 20 20 20 N 2 3.63 0.60 119.90 123.53 A A A N1 C6 O6 G G G 20 20 20 N 2 -3.62 0.60 123.90 120.28 A A A N1 C2 N3 G G G 21 21 21 N 2 6.68 0.70 119.90 126.58 A A A N3 C2 N2 G G G 21 21 21 N 2 4.11 0.60 119.90 124.01 A A A N1 C6 O6 G G G 21 21 21 N 2 -3.88 0.60 128.60 124.72 A A A C5 C6 O6 G G G 21 21 21 N 2 -3.06 0.50 117.70 114.64 A A A C5 C6 N1 A A A 23 23 23 N 2 7.35 0.60 118.60 125.95 A A A N1 C6 N6 A A A 23 23 23 N 2 7.78 0.70 119.90 127.68 A A A N3 C2 N2 G G G 24 24 24 N 2 6.25 0.60 118.60 124.85 A A A N1 C6 N6 A A A 25 25 25 N 2 4.88 0.60 118.60 123.48 A A A N1 C6 N6 A A A 26 26 26 N 2 6.19 0.70 119.90 126.09 A A A N3 C2 N2 G G G 27 27 27 N 2 -3.62 0.60 128.60 124.98 A A A C5 C6 O6 G G G 27 27 27 N 2 6.75 0.70 119.90 126.65 A A A N3 C2 N2 G G G 28 28 28 N 2 7.44 0.60 118.60 126.04 A A A N1 C6 N6 A A A 29 29 29 N 2 6.28 0.60 118.60 124.88 A A A N1 C6 N6 A A A 31 31 31 N 2 7.71 0.70 119.90 127.61 A A A N3 C2 N2 G G G 33 33 33 N 2 -3.89 0.60 128.60 124.71 A A A C5 C6 O6 G G G 33 33 33 N 3 6.44 0.70 119.90 126.34 A A A N3 C2 N2 G G G 1 1 1 N 3 3.67 0.60 119.90 123.57 A A A N1 C6 O6 G G G 1 1 1 N 3 6.21 0.70 119.90 126.11 A A A N3 C2 N2 G G G 2 2 2 N 3 6.05 0.70 119.90 125.95 A A A N3 C2 N2 G G G 4 4 4 N 3 3.60 0.60 119.90 123.50 A A A N1 C6 O6 G G G 4 4 4 N 3 -3.63 0.60 123.90 120.27 A A A N1 C2 N3 G G G 6 6 6 N 3 6.80 0.70 119.90 126.70 A A A N3 C2 N2 G G G 6 6 6 N 3 3.93 0.60 119.90 123.83 A A A N1 C6 O6 G G G 6 6 6 N 3 -4.06 0.60 128.60 124.54 A A A C5 C6 O6 G G G 6 6 6 N 3 -4.23 0.70 109.70 105.47 A A A C1' O4' C4' A A A 8 8 8 N 3 6.80 0.60 118.60 125.40 A A A N1 C6 N6 A A A 8 8 8 N 3 5.34 0.70 119.90 125.24 A A A N3 C2 N2 G G G 9 9 9 N 3 3.68 0.60 119.90 123.58 A A A N1 C6 O6 G G G 9 9 9 N 3 5.80 0.70 119.90 125.70 A A A N3 C2 N2 G G G 10 10 10 N 3 6.87 0.60 118.60 125.47 A A A N1 C6 N6 A A A 11 11 11 N 3 6.19 0.60 118.60 124.79 A A A N1 C6 N6 A A A 13 13 13 N 3 6.31 0.70 119.90 126.21 A A A N3 C2 N2 G G G 15 15 15 N 3 3.64 0.60 119.90 123.54 A A A N1 C6 O6 G G G 15 15 15 N 3 4.72 0.70 108.50 113.22 A A A O4' C1' N9 G G G 20 20 20 N 3 5.92 0.70 119.90 125.82 A A A N3 C2 N2 G G G 20 20 20 N 3 6.56 0.70 119.90 126.46 A A A N3 C2 N2 G G G 21 21 21 N 3 3.85 0.60 119.90 123.75 A A A N1 C6 O6 G G G 21 21 21 N 3 -3.95 0.60 128.60 124.65 A A A C5 C6 O6 G G G 21 21 21 N 3 -3.02 0.50 117.70 114.68 A A A C5 C6 N1 A A A 23 23 23 N 3 5.82 0.60 118.60 124.42 A A A N1 C6 N6 A A A 23 23 23 N 3 7.69 0.70 119.90 127.59 A A A N3 C2 N2 G G G 24 24 24 N 3 3.84 0.60 119.90 123.74 A A A N1 C6 O6 G G G 24 24 24 N 3 7.41 0.60 118.60 126.01 A A A N1 C6 N6 A A A 25 25 25 N 3 -5.11 0.80 123.70 118.59 A A A C5 C6 N6 A A A 25 25 25 N 3 6.13 0.60 118.60 124.73 A A A N1 C6 N6 A A A 26 26 26 N 3 5.44 0.70 119.90 125.34 A A A N3 C2 N2 G G G 27 27 27 N 3 6.14 0.70 119.90 126.04 A A A N3 C2 N2 G G G 28 28 28 N 3 3.64 0.60 119.90 123.54 A A A N1 C6 O6 G G G 28 28 28 N 3 7.15 0.60 118.60 125.75 A A A N1 C6 N6 A A A 29 29 29 N 3 4.22 0.70 118.00 122.22 A A A N3 C4 N4 C C C 30 30 30 N 3 7.15 0.60 118.60 125.75 A A A N1 C6 N6 A A A 31 31 31 N 3 -4.84 0.80 123.70 118.86 A A A C5 C6 N6 A A A 31 31 31 N 3 6.09 0.70 119.90 125.99 A A A N3 C2 N2 G G G 33 33 33 N 3 3.63 0.60 119.90 123.53 A A A N1 C6 O6 G G G 33 33 33 N 4 7.07 0.70 119.90 126.97 A A A N3 C2 N2 G G G 1 1 1 N 4 6.82 0.70 119.90 126.72 A A A N3 C2 N2 G G G 2 2 2 N 4 6.58 0.70 119.90 126.48 A A A N3 C2 N2 G G G 4 4 4 N 4 3.70 0.60 119.90 123.60 A A A N1 C6 O6 G G G 4 4 4 N 4 -3.65 0.60 128.60 124.95 A A A C5 C6 O6 G G G 4 4 4 N 4 6.13 0.70 119.90 126.03 A A A N3 C2 N2 G G G 6 6 6 N 4 -3.62 0.60 128.60 124.98 A A A C5 C6 O6 G G G 6 6 6 N 4 7.16 0.60 118.60 125.76 A A A N1 C6 N6 A A A 8 8 8 N 4 6.73 0.70 119.90 126.63 A A A N3 C2 N2 G G G 9 9 9 N 4 5.60 0.70 119.90 125.50 A A A N3 C2 N2 G G G 10 10 10 N 4 3.74 0.60 119.90 123.64 A A A N1 C6 O6 G G G 10 10 10 N 4 7.41 0.60 118.60 126.01 A A A N1 C6 N6 A A A 11 11 11 N 4 6.87 0.60 118.60 125.47 A A A N1 C6 N6 A A A 13 13 13 N 4 6.31 0.70 119.90 126.21 A A A N3 C2 N2 G G G 15 15 15 N 4 3.89 0.60 119.90 123.79 A A A N1 C6 O6 G G G 15 15 15 N 4 -3.88 0.60 128.60 124.72 A A A C5 C6 O6 G G G 15 15 15 N 4 -4.33 0.70 109.70 105.37 A A A C1' O4' C4' G G G 20 20 20 N 4 5.79 0.70 119.90 125.69 A A A N3 C2 N2 G G G 20 20 20 N 4 3.69 0.60 119.90 123.59 A A A N1 C6 O6 G G G 20 20 20 N 4 -3.63 0.60 123.90 120.27 A A A N1 C2 N3 G G G 21 21 21 N 4 6.42 0.70 119.90 126.32 A A A N3 C2 N2 G G G 21 21 21 N 4 3.92 0.60 119.90 123.82 A A A N1 C6 O6 G G G 21 21 21 N 4 -3.96 0.60 128.60 124.64 A A A C5 C6 O6 G G G 21 21 21 N 4 5.95 0.60 118.60 124.55 A A A N1 C6 N6 A A A 23 23 23 N 4 7.65 0.70 119.90 127.55 A A A N3 C2 N2 G G G 24 24 24 N 4 3.80 0.60 119.90 123.70 A A A N1 C6 O6 G G G 24 24 24 N 4 6.40 0.60 118.60 125.00 A A A N1 C6 N6 A A A 25 25 25 N 4 5.75 0.60 118.60 124.35 A A A N1 C6 N6 A A A 26 26 26 N 4 6.30 0.70 119.90 126.20 A A A N3 C2 N2 G G G 27 27 27 N 4 6.80 0.70 119.90 126.70 A A A N3 C2 N2 G G G 28 28 28 N 4 7.20 0.60 118.60 125.80 A A A N1 C6 N6 A A A 29 29 29 N 4 6.98 0.60 118.60 125.58 A A A N1 C6 N6 A A A 31 31 31 N 4 6.46 0.70 119.90 126.36 A A A N3 C2 N2 G G G 33 33 33 N 4 3.93 0.60 119.90 123.83 A A A N1 C6 O6 G G G 33 33 33 N 4 -3.75 0.60 128.60 124.85 A A A C5 C6 O6 G G G 33 33 33 N 5 6.99 0.70 119.90 126.89 A A A N3 C2 N2 G G G 1 1 1 N 5 3.65 0.60 119.90 123.55 A A A N1 C6 O6 G G G 1 1 1 N 5 6.96 0.70 119.90 126.86 A A A N3 C2 N2 G G G 2 2 2 N 5 3.69 0.60 119.90 123.59 A A A N1 C6 O6 G G G 2 2 2 N 5 -3.69 0.60 128.60 124.91 A A A C5 C6 O6 G G G 2 2 2 N 5 4.38 0.70 118.00 122.38 A A A N3 C4 N4 C C C 3 3 3 N 5 6.79 0.70 119.90 126.69 A A A N3 C2 N2 G G G 4 4 4 N 5 3.68 0.60 119.90 123.58 A A A N1 C6 O6 G G G 4 4 4 N 5 6.30 0.70 119.90 126.20 A A A N3 C2 N2 G G G 6 6 6 N 5 3.94 0.60 119.90 123.84 A A A N1 C6 O6 G G G 6 6 6 N 5 -4.20 0.60 128.60 124.40 A A A C5 C6 O6 G G G 6 6 6 N 5 4.29 0.70 108.50 112.79 A A A O4' C1' N1 U U U 7 7 7 N 5 6.88 0.60 118.60 125.48 A A A N1 C6 N6 A A A 8 8 8 N 5 6.94 0.70 119.90 126.84 A A A N3 C2 N2 G G G 9 9 9 N 5 6.55 0.70 119.90 126.45 A A A N3 C2 N2 G G G 10 10 10 N 5 6.97 0.60 118.60 125.57 A A A N1 C6 N6 A A A 11 11 11 N 5 6.73 0.60 118.60 125.33 A A A N1 C6 N6 A A A 13 13 13 N 5 6.47 0.70 119.90 126.37 A A A N3 C2 N2 G G G 15 15 15 N 5 3.81 0.60 119.90 123.71 A A A N1 C6 O6 G G G 15 15 15 N 5 -3.72 0.60 128.60 124.88 A A A C5 C6 O6 G G G 15 15 15 N 5 6.80 0.70 119.90 126.70 A A A N3 C2 N2 G G G 20 20 20 N 5 6.01 0.70 119.90 125.91 A A A N3 C2 N2 G G G 21 21 21 N 5 3.76 0.60 119.90 123.66 A A A N1 C6 O6 G G G 21 21 21 N 5 -3.80 0.60 128.60 124.80 A A A C5 C6 O6 G G G 21 21 21 N 5 6.36 0.60 118.60 124.96 A A A N1 C6 N6 A A A 23 23 23 N 5 7.21 0.70 119.90 127.11 A A A N3 C2 N2 G G G 24 24 24 N 5 4.15 0.60 119.90 124.05 A A A N1 C6 O6 G G G 24 24 24 N 5 -3.84 0.60 128.60 124.76 A A A C5 C6 O6 G G G 24 24 24 N 5 7.13 0.60 118.60 125.73 A A A N1 C6 N6 A A A 25 25 25 N 5 5.36 0.60 118.60 123.96 A A A N1 C6 N6 A A A 26 26 26 N 5 6.79 0.70 119.90 126.69 A A A N3 C2 N2 G G G 27 27 27 N 5 6.80 0.70 108.50 115.30 A A A O4' C1' N9 G G G 28 28 28 N 5 5.76 0.70 119.90 125.66 A A A N3 C2 N2 G G G 28 28 28 N 5 4.37 0.70 108.50 112.87 A A A O4' C1' N9 A A A 29 29 29 N 5 7.20 0.60 118.60 125.80 A A A N1 C6 N6 A A A 29 29 29 N 5 5.26 0.70 118.00 123.26 A A A N3 C4 N4 C C C 30 30 30 N 5 6.84 0.60 118.60 125.44 A A A N1 C6 N6 A A A 31 31 31 N 5 6.61 0.70 119.90 126.51 A A A N3 C2 N2 G G G 33 33 33 N 5 3.96 0.60 119.90 123.86 A A A N1 C6 O6 G G G 33 33 33 N 5 -3.80 0.60 128.60 124.80 A A A C5 C6 O6 G G G 33 33 33 N 1 A A C2 N3 U U 5 5 0.044 0.007 1.373 1.417 N 1 A A C2 N3 U U 7 7 0.045 0.007 1.373 1.418 N 1 A A N9 C4 A A 13 13 0.040 0.006 1.374 1.414 N 1 A A C2 N3 U U 14 14 0.045 0.007 1.373 1.418 N 1 A A C2 N3 U U 17 17 0.045 0.007 1.373 1.418 N 1 A A C2 N3 U U 18 18 0.050 0.007 1.373 1.423 N 1 A A C2 N3 G G 33 33 0.050 0.008 1.323 1.373 N 2 A A C5 N7 G G 2 2 -0.038 0.006 1.388 1.350 N 2 A A C2 N3 U U 5 5 0.042 0.007 1.373 1.415 N 2 A A N1 C2 U U 12 12 0.058 0.009 1.381 1.439 N 2 A A C2 N3 U U 12 12 0.043 0.007 1.373 1.416 N 2 A A C2 N3 U U 14 14 0.045 0.007 1.373 1.418 N 2 A A C2 N3 U U 17 17 0.043 0.007 1.373 1.416 N 2 A A C2 N3 U U 18 18 0.048 0.007 1.373 1.421 N 2 A A C8 N9 G G 20 20 -0.043 0.007 1.374 1.331 N 2 A A N9 C4 A A 31 31 0.036 0.006 1.374 1.410 N 2 A A C2 N3 G G 33 33 0.051 0.008 1.323 1.374 N 3 A A C2 N3 U U 5 5 0.046 0.007 1.373 1.419 N 3 A A C2 N3 U U 7 7 0.042 0.007 1.373 1.415 N 3 A A N9 C4 A A 8 8 0.037 0.006 1.374 1.411 N 3 A A N1 C2 U U 12 12 0.057 0.009 1.381 1.438 N 3 A A C2 N3 U U 12 12 0.042 0.007 1.373 1.415 N 3 A A N9 C4 A A 13 13 0.037 0.006 1.374 1.411 N 3 A A C2 N3 U U 17 17 0.044 0.007 1.373 1.417 N 3 A A C2 N3 U U 18 18 0.050 0.007 1.373 1.423 N 3 A A N9 C4 A A 29 29 0.037 0.006 1.374 1.411 N 4 A A C2 N3 U U 5 5 0.046 0.007 1.373 1.419 N 4 A A C2 N3 U U 14 14 0.044 0.007 1.373 1.417 N 4 A A C2 N3 U U 17 17 0.044 0.007 1.373 1.417 N 4 A A C2 N3 U U 18 18 0.050 0.007 1.373 1.423 N 4 A A C8 N9 G G 20 20 -0.052 0.007 1.374 1.322 N 4 A A N9 C4 A A 29 29 0.037 0.006 1.374 1.411 N 5 A A C2 N3 U U 7 7 0.044 0.007 1.373 1.417 N 5 A A N9 C4 A A 13 13 0.038 0.006 1.374 1.412 N 5 A A C2 N3 U U 14 14 0.044 0.007 1.373 1.417 N 5 A A C2 N3 U U 17 17 0.045 0.007 1.373 1.418 N 5 A A C2 N3 U U 18 18 0.050 0.007 1.373 1.423 N model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 SOLUTION STRUCTURE OF FMN-RNA APTAMER COMPLEX, NMR, 5 STRUCTURES 1 N N 2 N N hydrog G-C PAIR A G 1 A O6 G 1 1_555 A C 32 A N4 C 32 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 A C 35 A N3 C 35 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 A C 35 A O2 C 35 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 A C 35 A N4 C 35 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 A C 34 A N3 C 34 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 A C 34 A O2 C 34 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 A C 34 A N4 C 34 1_555 hydrog WATSON-CRICK A C 3 A N3 C 3 1_555 A G 33 A N1 G 33 1_555 hydrog WATSON-CRICK A C 3 A N4 C 3 1_555 A G 33 A O6 G 33 1_555 hydrog WATSON-CRICK A C 3 A O2 C 3 1_555 A G 33 A N2 G 33 1_555 hydrog G-A MISPAIR A G 4 A O6 G 4 1_555 A A 31 A N6 A 31 1_555 hydrog WATSON-CRICK A G 4 A N1 G 4 1_555 A C 32 A N3 C 32 1_555 hydrog WATSON-CRICK A G 4 A N2 G 4 1_555 A C 32 A O2 C 32 1_555 hydrog WATSON-CRICK A G 4 A O6 G 4 1_555 A C 32 A N4 C 32 1_555 hydrog WATSON-CRICK A U 5 A N3 U 5 1_555 A A 31 A N1 A 31 1_555 hydrog WATSON-CRICK A U 5 A O4 U 5 1_555 A A 31 A N6 A 31 1_555 hydrog WATSON-CRICK A G 6 A N1 G 6 1_555 A C 30 A N3 C 30 1_555 hydrog WATSON-CRICK A G 6 A N2 G 6 1_555 A C 30 A O2 C 30 1_555 hydrog WATSON-CRICK A G 6 A O6 G 6 1_555 A C 30 A N4 C 30 1_555 hydrog WATSON-CRICK A U 7 A N3 U 7 1_555 A A 29 A N1 A 29 1_555 hydrog WATSON-CRICK A U 7 A O4 U 7 1_555 A A 29 A N6 A 29 1_555 hydrog A-G MISPAIR A A 8 A N1 A 8 1_555 A G 28 A N1 G 28 1_555 hydrog G-G MISPAIR A G 9 A N1 G 9 1_555 A G 27 A O6 G 27 1_555 hydrog G-U MISPAIR A G 10 A N2 G 10 1_555 A U 12 A O4 U 12 1_555 hydrog REVERSED HOOGSTEEN A U 12 A N3 U 12 1_555 A A 25 A N7 A 25 1_555 hydrog REVERSED HOOGSTEEN A U 12 A O2 U 12 1_555 A A 25 A N6 A 25 1_555 hydrog A-G MISPAIR A A 13 A N7 A 13 1_555 A G 24 A N2 G 24 1_555 hydrog WATSON-CRICK A U 14 A N3 U 14 1_555 A A 23 A N1 A 23 1_555 hydrog WATSON-CRICK A U 14 A O4 U 14 1_555 A A 23 A N6 A 23 1_555 hydrog WATSON-CRICK A G 15 A N1 G 15 1_555 A C 22 A N3 C 22 1_555 hydrog WATSON-CRICK A G 15 A N2 G 15 1_555 A C 22 A O2 C 22 1_555 hydrog WATSON-CRICK A G 15 A O6 G 15 1_555 A C 22 A N4 C 22 1_555 hydrog WATSON-CRICK A C 16 A N3 C 16 1_555 A G 21 A N1 G 21 1_555 hydrog WATSON-CRICK A C 16 A N4 C 16 1_555 A G 21 A O6 G 21 1_555 hydrog WATSON-CRICK A C 16 A O2 C 16 1_555 A G 21 A N2 G 21 1_555 hydrog U-G MISPAIR A U 17 A O2 U 17 1_555 A G 20 A N2 G 20 1_555 RNA FMN-RNA COMPLEX, FMN-ADENINE PAIRING, FMN INTERCALATION, BASE TRIPLE PLATFORM, BASE PAIR MISMATCHES, RNA 1FMN PDB 1 1FMN 1 35 1FMN 1 35 1FMN A 1 1 35 BINDING SITE FOR RESIDUE FMN A 36 A FMN 36 Software 6 A G 9 A G 9 6 1_555 A G 10 A G 10 6 1_555 A U 12 A U 12 6 1_555 A A 25 A A 25 6 1_555 A A 26 A A 26 6 1_555 A G 27 A G 27 6 1_555 1 P 1