69.52
15.610
8.186
5.104
A
P
DG
1002
ATOM
A
P
DG
1
1
1.00
1
P
70.93
16.986
7.938
5.202
A
OP1
DG
1002
ATOM
A
OP1
DG
1
1
1.00
1
O
54.57
15.029
9.282
4.439
A
OP2
DG
1002
ATOM
A
OP2
DG
1
1
1.00
1
O
52.86
15.068
8.297
6.633
A
O5'
DG
1002
ATOM
A
O5'
DG
1
1
1.00
1
O
37.45
15.062
7.120
7.491
A
C5'
DG
1002
ATOM
A
C5'
DG
1
1
1.00
1
C
35.02
14.920
7.768
8.920
A
C4'
DG
1002
ATOM
A
C4'
DG
1
1
1.00
1
C
36.83
16.004
8.714
9.258
A
O4'
DG
1002
ATOM
A
O4'
DG
1
1
1.00
1
O
31.04
13.555
8.501
9.194
A
C3'
DG
1002
ATOM
A
C3'
DG
1
1
1.00
1
C
36.56
13.151
8.118
10.407
A
O3'
DG
1002
ATOM
A
O3'
DG
1
1
1.00
1
O
31.25
13.966
9.944
9.066
A
C2'
DG
1002
ATOM
A
C2'
DG
1
1
1.00
1
C
29.95
15.394
10.026
9.616
A
C1'
DG
1002
ATOM
A
C1'
DG
1
1
1.00
1
C
27.52
16.452
10.912
9.115
A
N9
DG
1002
ATOM
A
N9
DG
1
1
1.00
1
N
23.19
16.817
11.049
7.778
A
C8
DG
1002
ATOM
A
C8
DG
1
1
1.00
1
C
33.91
17.787
11.899
7.595
A
N7
DG
1002
ATOM
A
N7
DG
1
1
1.00
1
N
31.06
18.095
12.361
8.871
A
C5
DG
1002
ATOM
A
C5
DG
1
1
1.00
1
C
19.85
19.071
13.300
9.266
A
C6
DG
1002
ATOM
A
C6
DG
1
1
1.00
1
C
28.61
19.890
13.945
8.604
A
O6
DG
1002
ATOM
A
O6
DG
1
1
1.00
1
O
21.90
19.068
13.500
10.665
A
N1
DG
1002
ATOM
A
N1
DG
1
1
1.00
1
N
21.61
18.213
12.844
11.486
A
C2
DG
1002
ATOM
A
C2
DG
1
1
1.00
1
C
24.33
18.306
13.118
12.801
A
N2
DG
1002
ATOM
A
N2
DG
1
1
1.00
1
N
26.16
17.306
11.973
11.118
A
N3
DG
1002
ATOM
A
N3
DG
1
1
1.00
1
N
25.47
17.281
11.759
9.803
A
C4
DG
1002
ATOM
A
C4
DG
1
1
1.00
1
C
26.57
14.370
13.975
11.203
A
N1
BRU
1003
HETATM
A
N1
BRU
1
2
1.00
1
N
26.84
15.427
14.844
11.439
A
C2
BRU
1003
HETATM
A
C2
BRU
1
2
1.00
1
C
22.47
16.095
15.308
10.365
A
N3
BRU
1003
HETATM
A
N3
BRU
1
2
1.00
1
N
22.03
15.847
14.995
9.041
A
C4
BRU
1003
HETATM
A
C4
BRU
1
2
1.00
1
C
27.75
14.750
14.103
8.871
A
C5
BRU
1003
HETATM
A
C5
BRU
1
2
1.00
1
C
33.22
14.047
13.614
9.908
A
C6
BRU
1003
HETATM
A
C6
BRU
1
2
1.00
1
C
24.92
15.767
15.206
12.560
A
O2
BRU
1003
HETATM
A
O2
BRU
1
2
1.00
1
O
28.47
16.559
15.509
8.168
A
O4
BRU
1003
HETATM
A
O4
BRU
1
2
1.00
1
O
36.17
14.271
13.583
7.123
A
BR
BRU
1003
HETATM
A
BR
BRU
1
2
1.00
1
BR
32.44
13.656
13.483
12.331
A
C1'
BRU
1003
HETATM
A
C1'
BRU
1
2
1.00
1
C
26.66
12.139
13.586
12.438
A
C2'
BRU
1003
HETATM
A
C2'
BRU
1
2
1.00
1
C
31.23
11.693
12.361
13.212
A
C3'
BRU
1003
HETATM
A
C3'
BRU
1
2
1.00
1
C
32.16
12.950
11.404
13.149
A
C4'
BRU
1003
HETATM
A
C4'
BRU
1
2
1.00
1
C
33.75
11.475
12.512
14.517
A
O3'
BRU
1003
HETATM
A
O3'
BRU
1
2
1.00
1
O
26.59
13.924
12.015
12.223
A
O4'
BRU
1003
HETATM
A
O4'
BRU
1
2
1.00
1
O
25.15
12.649
9.895
12.824
A
C5'
BRU
1003
HETATM
A
C5'
BRU
1
2
1.00
1
C
34.93
11.870
10.035
11.569
A
O5'
BRU
1003
HETATM
A
O5'
BRU
1
2
1.00
1
O
42.87
11.595
8.632
10.810
A
P
BRU
1003
HETATM
A
P
BRU
1
2
1.00
1
P
43.95
11.178
7.755
11.804
A
OP1
BRU
1003
HETATM
A
OP1
BRU
1
2
1.00
1
O
55.28
11.013
8.936
9.578
A
OP2
BRU
1003
HETATM
A
OP2
BRU
1
2
1.00
1
O
41.00
10.492
13.594
15.267
A
P
DA
1004
ATOM
A
P
DA
1
3
1.00
1
P
45.46
10.492
13.160
16.606
A
OP1
DA
1004
ATOM
A
OP1
DA
1
3
1.00
1
O
47.42
9.409
13.779
14.406
A
OP2
DA
1004
ATOM
A
OP2
DA
1
3
1.00
1
O
30.37
11.284
15.012
15.234
A
O5'
DA
1004
ATOM
A
O5'
DA
1
3
1.00
1
O
28.22
12.394
14.960
16.194
A
C5'
DA
1004
ATOM
A
C5'
DA
1
3
1.00
1
C
26.19
12.902
16.448
16.214
A
C4'
DA
1004
ATOM
A
C4'
DA
1
3
1.00
1
C
28.93
13.701
16.729
15.006
A
O4'
DA
1004
ATOM
A
O4'
DA
1
3
1.00
1
O
20.50
11.808
17.577
16.393
A
C3'
DA
1004
ATOM
A
C3'
DA
1
3
1.00
1
C
31.40
12.198
18.309
17.420
A
O3'
DA
1004
ATOM
A
O3'
DA
1
3
1.00
1
O
24.78
11.855
18.252
15.038
A
C2'
DA
1004
ATOM
A
C2'
DA
1
3
1.00
1
C
35.14
13.274
18.034
14.490
A
C1'
DA
1004
ATOM
A
C1'
DA
1
3
1.00
1
C
26.16
13.533
17.918
13.044
A
N9
DA
1004
ATOM
A
N9
DA
1
3
1.00
1
N
32.46
12.844
17.208
12.110
A
C8
DA
1004
ATOM
A
C8
DA
1
3
1.00
1
C
31.17
13.341
17.315
10.897
A
N7
DA
1004
ATOM
A
N7
DA
1
3
1.00
1
N
22.68
14.420
18.148
11.061
A
C5
DA
1004
ATOM
A
C5
DA
1
3
1.00
1
C
23.86
15.350
18.638
10.119
A
C6
DA
1004
ATOM
A
C6
DA
1
3
1.00
1
C
33.02
15.266
18.296
8.818
A
N6
DA
1004
ATOM
A
N6
DA
1
3
1.00
1
N
27.09
16.309
19.440
10.563
A
N1
DA
1004
ATOM
A
N1
DA
1
3
1.00
1
N
28.14
16.343
19.746
11.871
A
C2
DA
1004
ATOM
A
C2
DA
1
3
1.00
1
C
24.64
15.527
19.350
12.852
A
N3
DA
1004
ATOM
A
N3
DA
1
3
1.00
1
N
28.26
14.563
18.536
12.373
A
C4
DA
1004
ATOM
A
C4
DA
1
3
1.00
1
C
39.87
11.159
19.544
17.856
A
P
DC
1005
ATOM
A
P
DC
1
4
1.00
1
P
45.73
11.549
19.881
19.166
A
OP1
DC
1005
ATOM
A
OP1
DC
1
4
1.00
1
O
31.14
9.920
19.159
17.362
A
OP2
DC
1005
ATOM
A
OP2
DC
1
4
1.00
1
O
28.19
11.655
20.800
16.976
A
O5'
DC
1005
ATOM
A
O5'
DC
1
4
1.00
1
O
27.99
13.028
21.192
17.280
A
C5'
DC
1005
ATOM
A
C5'
DC
1
4
1.00
1
C
31.75
13.236
22.165
16.046
A
C4'
DC
1005
ATOM
A
C4'
DC
1
4
1.00
1
C
28.52
13.418
21.410
14.800
A
O4'
DC
1005
ATOM
A
O4'
DC
1
4
1.00
1
O
31.22
12.126
23.242
15.796
A
C3'
DC
1005
ATOM
A
C3'
DC
1
4
1.00
1
C
29.69
12.565
24.345
16.351
A
O3'
DC
1005
ATOM
A
O3'
DC
1
4
1.00
1
O
42.83
12.069
23.316
14.289
A
C2'
DC
1005
ATOM
A
C2'
DC
1
4
1.00
1
C
30.68
13.185
22.428
13.745
A
C1'
DC
1005
ATOM
A
C1'
DC
1
4
1.00
1
C
27.10
12.884
21.769
12.517
A
N1
DC
1005
ATOM
A
N1
DC
1
4
1.00
1
N
29.24
13.677
22.011
11.400
A
C2
DC
1005
ATOM
A
C2
DC
1
4
1.00
1
C
26.66
14.616
22.798
11.534
A
O2
DC
1005
ATOM
A
O2
DC
1
4
1.00
1
O
32.34
13.383
21.384
10.254
A
N3
DC
1005
ATOM
A
N3
DC
1
4
1.00
1
N
26.61
12.362
20.553
10.170
A
C4
DC
1005
ATOM
A
C4
DC
1
4
1.00
1
C
30.81
12.123
19.959
8.998
A
N4
DC
1005
ATOM
A
N4
DC
1
4
1.00
1
N
28.55
11.515
20.266
11.293
A
C5
DC
1005
ATOM
A
C5
DC
1
4
1.00
1
C
25.85
11.818
20.890
12.425
A
C6
DC
1005
ATOM
A
C6
DC
1
4
1.00
1
C
38.09
11.652
25.692
16.714
A
P
DG
1006
ATOM
A
P
DG
1
5
1.00
1
P
47.47
12.336
26.404
17.684
A
OP1
DG
1006
ATOM
A
OP1
DG
1
5
1.00
1
O
40.54
10.321
25.237
16.746
A
OP2
DG
1006
ATOM
A
OP2
DG
1
5
1.00
1
O
32.42
11.726
26.568
15.327
A
O5'
DG
1006
ATOM
A
O5'
DG
1
5
1.00
1
O
36.23
12.962
27.352
15.178
A
C5'
DG
1006
ATOM
A
C5'
DG
1
5
1.00
1
C
27.89
12.516
28.565
14.270
A
C4'
DG
1006
ATOM
A
C4'
DG
1
5
1.00
1
C
33.06
11.915
28.132
12.988
A
O4'
DG
1006
ATOM
A
O4'
DG
1
5
1.00
1
O
35.96
11.522
29.610
14.904
A
C3'
DG
1006
ATOM
A
C3'
DG
1
5
1.00
1
C
35.98
12.207
30.490
15.629
A
O3'
DG
1006
ATOM
A
O3'
DG
1
5
1.00
1
O
27.71
10.909
30.214
13.665
A
C2'
DG
1006
ATOM
A
C2'
DG
1
5
1.00
1
C
26.37
10.856
29.105
12.610
A
C1'
DG
1006
ATOM
A
C1'
DG
1
5
1.00
1
C
26.56
9.685
28.230
12.439
A
N9
DG
1006
ATOM
A
N9
DG
1
5
1.00
1
N
30.15
8.707
27.884
13.327
A
C8
DG
1006
ATOM
A
C8
DG
1
5
1.00
1
C
29.44
7.787
27.072
12.861
A
N7
DG
1006
ATOM
A
N7
DG
1
5
1.00
1
N
26.89
8.194
26.864
11.550
A
C5
DG
1006
ATOM
A
C5
DG
1
5
1.00
1
C
30.41
7.600
26.074
10.535
A
C6
DG
1006
ATOM
A
C6
DG
1
5
1.00
1
C
28.02
6.581
25.391
10.595
A
O6
DG
1006
ATOM
A
O6
DG
1
5
1.00
1
O
28.17
8.364
26.171
9.371
A
N1
DG
1006
ATOM
A
N1
DG
1
5
1.00
1
N
23.46
9.497
26.900
9.225
A
C2
DG
1006
ATOM
A
C2
DG
1
5
1.00
1
C
27.96
10.135
26.896
8.030
A
N2
DG
1006
ATOM
A
N2
DG
1
5
1.00
1
N
30.96
10.063
27.643
10.167
A
N3
DG
1006
ATOM
A
N3
DG
1
5
1.00
1
N
22.33
9.334
27.558
11.291
A
C4
DG
1006
ATOM
A
C4
DG
1
5
1.00
1
C
45.10
23.720
24.147
-1.124
B
O5'
DC
2001
ATOM
B
O5'
DC
2
1
0.00
1
O
45.10
22.561
23.313
-0.778
B
C5'
DC
2001
ATOM
B
C5'
DC
2
1
1.00
1
C
38.02
21.378
24.083
-1.493
B
C4'
DC
2001
ATOM
B
C4'
DC
2
1
1.00
1
C
31.70
21.746
24.487
-2.859
B
O4'
DC
2001
ATOM
B
O4'
DC
2
1
1.00
1
O
39.59
19.991
23.351
-1.581
B
C3'
DC
2001
ATOM
B
C3'
DC
2
1
1.00
1
C
40.63
19.038
24.250
-1.408
B
O3'
DC
2001
ATOM
B
O3'
DC
2
1
1.00
1
O
36.91
20.116
22.774
-2.990
B
C2'
DC
2001
ATOM
B
C2'
DC
2
1
1.00
1
C
29.07
20.688
23.968
-3.780
B
C1'
DC
2001
ATOM
B
C1'
DC
2
1
1.00
1
C
30.54
21.347
23.802
-5.037
B
N1
DC
2001
ATOM
B
N1
DC
2
1
1.00
1
N
30.19
20.921
24.591
-6.119
B
C2
DC
2001
ATOM
B
C2
DC
2
1
1.00
1
C
25.89
19.999
25.357
-5.865
B
O2
DC
2001
ATOM
B
O2
DC
2
1
1.00
1
O
34.39
21.499
24.486
-7.326
B
N3
DC
2001
ATOM
B
N3
DC
2
1
1.00
1
N
32.76
22.500
23.623
-7.519
B
C4
DC
2001
ATOM
B
C4
DC
2
1
1.00
1
C
30.68
23.056
23.543
-8.739
B
N4
DC
2001
ATOM
B
N4
DC
2
1
1.00
1
N
38.59
22.968
22.807
-6.451
B
C5
DC
2001
ATOM
B
C5
DC
2
1
1.00
1
C
33.93
22.377
22.923
-5.256
B
C6
DC
2001
ATOM
B
C6
DC
2
1
1.00
1
C
52.32
18.022
23.654
-0.213
B
P
DG
2002
ATOM
B
P
DG
2
2
1.00
1
P
75.81
17.844
22.307
-0.554
B
OP1
DG
2002
ATOM
B
OP1
DG
2
2
1.00
1
O
45.54
17.006
24.618
-0.096
B
OP2
DG
2002
ATOM
B
OP2
DG
2
2
1.00
1
O
33.45
18.928
23.705
1.116
B
O5'
DG
2002
ATOM
B
O5'
DG
2
2
1.00
1
O
33.62
19.090
25.171
1.274
B
C5'
DG
2002
ATOM
B
C5'
DG
2
2
1.00
1
C
33.56
19.090
25.428
2.828
B
C4'
DG
2002
ATOM
B
C4'
DG
2
2
1.00
1
C
29.07
17.747
25.453
3.438
B
O4'
DG
2002
ATOM
B
O4'
DG
2
2
1.00
1
O
29.01
19.940
24.429
3.700
B
C3'
DG
2002
ATOM
B
C3'
DG
2
2
1.00
1
C
27.53
21.180
24.785
3.574
B
O3'
DG
2002
ATOM
B
O3'
DG
2
2
1.00
1
O
31.39
19.363
24.694
5.079
B
C2'
DG
2002
ATOM
B
C2'
DG
2
2
1.00
1
C
28.62
17.882
24.977
4.852
B
C1'
DG
2002
ATOM
B
C1'
DG
2
2
1.00
1
C
30.46
16.850
23.925
4.918
B
N9
DG
2002
ATOM
B
N9
DG
2
2
1.00
1
N
33.67
16.250
23.219
3.909
B
C8
DG
2002
ATOM
B
C8
DG
2
2
1.00
1
C
33.60
15.376
22.364
4.339
B
N7
DG
2002
ATOM
B
N7
DG
2
2
1.00
1
N
27.36
15.389
22.505
5.735
B
C5
DG
2002
ATOM
B
C5
DG
2
2
1.00
1
C
25.09
14.670
21.860
6.765
B
C6
DG
2002
ATOM
B
C6
DG
2
2
1.00
1
C
30.24
13.809
20.974
6.702
B
O6
DG
2002
ATOM
B
O6
DG
2
2
1.00
1
O
24.08
15.035
22.348
8.022
B
N1
DG
2002
ATOM
B
N1
DG
2
2
1.00
1
N
26.47
15.969
23.323
8.232
B
C2
DG
2002
ATOM
B
C2
DG
2
2
1.00
1
C
30.62
16.218
23.692
9.492
B
N2
DG
2002
ATOM
B
N2
DG
2
2
1.00
1
N
25.68
16.656
23.942
7.295
B
N3
DG
2002
ATOM
B
N3
DG
2
2
1.00
1
N
23.92
16.294
23.461
6.091
B
C4
DG
2002
ATOM
B
C4
DG
2
2
1.00
1
C
31.56
20.051
22.069
8.460
B
N1
BRU
2003
HETATM
B
N1
BRU
2
3
1.00
1
N
33.09
19.167
21.508
9.349
B
C2
BRU
2003
HETATM
B
C2
BRU
2
3
1.00
1
C
28.70
18.184
20.712
8.824
B
N3
BRU
2003
HETATM
B
N3
BRU
2
3
1.00
1
N
23.53
17.967
20.397
7.498
B
C4
BRU
2003
HETATM
B
C4
BRU
2
3
1.00
1
C
25.91
18.948
21.034
6.639
B
C5
BRU
2003
HETATM
B
C5
BRU
2
3
1.00
1
C
22.44
19.897
21.798
7.115
B
C6
BRU
2003
HETATM
B
C6
BRU
2
3
1.00
1
C
30.55
19.275
21.721
10.541
B
O2
BRU
2003
HETATM
B
O2
BRU
2
3
1.00
1
O
27.32
17.075
19.684
7.065
B
O4
BRU
2003
HETATM
B
O4
BRU
2
3
1.00
1
O
34.98
18.915
20.806
4.795
B
BR
BRU
2003
HETATM
B
BR
BRU
2
3
1.00
1
BR
24.97
21.111
22.908
8.907
B
C1'
BRU
2003
HETATM
B
C1'
BRU
2
3
1.00
1
C
22.51
22.533
22.380
8.572
B
C2'
BRU
2003
HETATM
B
C2'
BRU
2
3
1.00
1
C
28.02
23.376
23.652
8.534
B
C3'
BRU
2003
HETATM
B
C3'
BRU
2
3
1.00
1
C
25.26
22.377
24.669
7.912
B
C4'
BRU
2003
HETATM
B
C4'
BRU
2
3
1.00
1
C
38.13
23.727
24.088
9.741
B
O3'
BRU
2003
HETATM
B
O3'
BRU
2
3
1.00
1
O
30.22
21.003
24.214
8.247
B
O4'
BRU
2003
HETATM
B
O4'
BRU
2
3
1.00
1
O
26.33
22.575
24.973
6.367
B
C5'
BRU
2003
HETATM
B
C5'
BRU
2
3
1.00
1
C
27.05
22.115
23.761
5.760
B
O5'
BRU
2003
HETATM
B
O5'
BRU
2
3
1.00
1
O
34.53
22.337
23.723
4.120
B
P
BRU
2003
HETATM
B
P
BRU
2
3
1.00
1
P
31.16
23.556
24.404
3.948
B
OP1
BRU
2003
HETATM
B
OP1
BRU
2
3
1.00
1
O
36.00
21.946
22.450
3.724
B
OP2
BRU
2003
HETATM
B
OP2
BRU
2
3
1.00
1
O
41.10
24.830
23.226
10.687
B
P
DA
2004
ATOM
B
P
DA
2
4
1.00
1
P
43.62
25.493
24.237
11.381
B
OP1
DA
2004
ATOM
B
OP1
DA
2
4
1.00
1
O
35.26
25.303
22.212
9.833
B
OP2
DA
2004
ATOM
B
OP2
DA
2
4
1.00
1
O
32.27
23.871
22.491
11.772
B
O5'
DA
2004
ATOM
B
O5'
DA
2
4
1.00
1
O
32.23
22.997
23.364
12.571
B
C5'
DA
2004
ATOM
B
C5'
DA
2
4
1.00
1
C
35.81
22.425
22.379
13.664
B
C4'
DA
2004
ATOM
B
C4'
DA
2
4
1.00
1
C
33.04
21.266
21.561
13.217
B
O4'
DA
2004
ATOM
B
O4'
DA
2
4
1.00
1
O
28.78
23.501
21.401
14.303
B
C3'
DA
2004
ATOM
B
C3'
DA
2
4
1.00
1
C
30.11
23.259
21.345
15.621
B
O3'
DA
2004
ATOM
B
O3'
DA
2
4
1.00
1
O
23.45
23.211
20.168
13.521
B
C2'
DA
2004
ATOM
B
C2'
DA
2
4
1.00
1
C
24.07
21.677
20.150
13.257
B
C1'
DA
2004
ATOM
B
C1'
DA
2
4
1.00
1
C
26.58
21.174
19.529
12.027
B
N9
DA
2004
ATOM
B
N9
DA
2
4
1.00
1
N
25.10
21.683
19.771
10.768
B
C8
DA
2004
ATOM
B
C8
DA
2
4
1.00
1
C
29.60
21.067
19.104
9.835
B
N7
DA
2004
ATOM
B
N7
DA
2
4
1.00
1
N
22.58
20.101
18.374
10.502
B
C5
DA
2004
ATOM
B
C5
DA
2
4
1.00
1
C
23.23
19.131
17.475
10.049
B
C6
DA
2004
ATOM
B
C6
DA
2
4
1.00
1
C
27.84
18.989
17.157
8.763
B
N6
DA
2004
ATOM
B
N6
DA
2
4
1.00
1
N
25.46
18.317
16.922
10.968
B
N1
DA
2004
ATOM
B
N1
DA
2
4
1.00
1
N
27.83
18.487
17.266
12.256
B
C2
DA
2004
ATOM
B
C2
DA
2
4
1.00
1
C
24.44
19.363
18.099
12.790
B
N3
DA
2004
ATOM
B
N3
DA
2
4
1.00
1
N
22.82
20.156
18.634
11.861
B
C4
DA
2004
ATOM
B
C4
DA
2
4
1.00
1
C
30.52
24.347
20.624
16.648
B
P
DC
2005
ATOM
B
P
DC
2
5
1.00
1
P
35.82
23.962
21.104
17.939
B
OP1
DC
2005
ATOM
B
OP1
DC
2
5
1.00
1
O
32.24
25.608
20.731
16.104
B
OP2
DC
2005
ATOM
B
OP2
DC
2
5
1.00
1
O
25.15
23.925
19.059
16.645
B
O5'
DC
2005
ATOM
B
O5'
DC
2
5
1.00
1
O
30.40
22.623
18.756
17.241
B
C5'
DC
2005
ATOM
B
C5'
DC
2
5
1.00
1
C
21.23
22.394
17.245
16.849
B
C4'
DC
2005
ATOM
B
C4'
DC
2
5
1.00
1
C
21.67
21.937
17.100
15.425
B
O4'
DC
2005
ATOM
B
O4'
DC
2
5
1.00
1
O
17.30
23.572
16.246
17.049
B
C3'
DC
2005
ATOM
B
C3'
DC
2
5
1.00
1
C
22.47
23.149
15.198
17.795
B
O3'
DC
2005
ATOM
B
O3'
DC
2
5
1.00
1
O
23.42
23.907
15.828
15.642
B
C2'
DC
2005
ATOM
B
C2'
DC
2
5
1.00
1
C
23.38
22.522
15.834
14.954
B
C1'
DC
2005
ATOM
B
C1'
DC
2
5
1.00
1
C
21.43
22.462
15.873
13.543
B
N1
DC
2005
ATOM
B
N1
DC
2
5
1.00
1
N
22.04
21.428
15.137
12.931
B
C2
DC
2005
ATOM
B
C2
DC
2
5
1.00
1
C
24.22
20.681
14.521
13.705
B
O2
DC
2005
ATOM
B
O2
DC
2
5
1.00
1
O
24.07
21.315
15.142
11.578
B
N3
DC
2005
ATOM
B
N3
DC
2
5
1.00
1
N
20.29
22.181
15.843
10.843
B
C4
DC
2005
ATOM
B
C4
DC
2
5
1.00
1
C
24.17
21.980
15.780
9.515
B
N4
DC
2005
ATOM
B
N4
DC
2
5
1.00
1
N
17.66
23.237
16.610
11.410
B
C5
DC
2005
ATOM
B
C5
DC
2
5
1.00
1
C
20.41
23.319
16.591
12.758
B
C6
DC
2005
ATOM
B
C6
DC
2
5
1.00
1
C
23.28
24.246
14.249
18.615
B
P
DG
2006
ATOM
B
P
DG
2
6
1.00
1
P
24.50
23.467
13.573
19.592
B
OP1
DG
2006
ATOM
B
OP1
DG
2
6
1.00
1
O
26.51
25.347
15.032
19.000
B
OP2
DG
2006
ATOM
B
OP2
DG
2
6
1.00
1
O
22.76
24.712
13.181
17.519
B
O5'
DG
2006
ATOM
B
O5'
DG
2
6
1.00
1
O
25.30
23.655
12.316
16.918
B
C5'
DG
2006
ATOM
B
C5'
DG
2
6
1.00
1
C
22.55
24.499
11.197
16.176
B
C4'
DG
2006
ATOM
B
C4'
DG
2
6
1.00
1
C
20.46
25.444
11.771
15.171
B
O4'
DG
2006
ATOM
B
O4'
DG
2
6
1.00
1
O
23.66
25.299
10.200
17.089
B
C3'
DG
2006
ATOM
B
C3'
DG
2
6
1.00
1
C
21.65
24.563
9.116
17.435
B
O3'
DG
2006
ATOM
B
O3'
DG
2
6
1.00
1
O
22.02
26.500
9.905
16.167
B
C2'
DG
2006
ATOM
B
C2'
DG
2
6
1.00
1
C
24.40
26.802
11.281
15.579
B
C1'
DG
2006
ATOM
B
C1'
DG
2
6
1.00
1
C
22.03
27.301
12.415
16.357
B
N9
DG
2006
ATOM
B
N9
DG
2
6
1.00
1
N
22.01
27.765
12.350
17.669
B
C8
DG
2006
ATOM
B
C8
DG
2
6
1.00
1
C
24.53
28.150
13.487
18.138
B
N7
DG
2006
ATOM
B
N7
DG
2
6
1.00
1
N
27.88
27.940
14.380
17.094
B
C5
DG
2006
ATOM
B
C5
DG
2
6
1.00
1
C
27.82
28.167
15.785
16.988
B
C6
DG
2006
ATOM
B
C6
DG
2
6
1.00
1
C
27.78
28.627
16.572
17.841
B
O6
DG
2006
ATOM
B
O6
DG
2
6
1.00
1
O
27.74
27.808
16.296
15.734
B
N1
DG
2006
ATOM
B
N1
DG
2
6
1.00
1
N
21.11
27.294
15.517
14.724
B
C2
DG
2006
ATOM
B
C2
DG
2
6
1.00
1
C
21.02
26.988
16.146
13.556
B
N2
DG
2006
ATOM
B
N2
DG
2
6
1.00
1
N
25.23
27.085
14.236
14.817
B
N3
DG
2006
ATOM
B
N3
DG
2
6
1.00
1
N
21.79
27.420
13.715
16.009
B
C4
DG
2006
ATOM
B
C4
DG
2
6
1.00
1
C
41.76
18.402
12.300
5.632
A
CO
CO
4002
HETATM
C
CO
CO
3
0.50
1
CO
32.53
8.724
21.672
9.269
A
C1
8AD
3014
HETATM
A
D
C1
8AD
4
0.60
1
C
26.76
9.996
22.681
7.858
A
C1
8AD
3014
HETATM
B
D
C1
8AD
4
0.20
1
C
47.38
7.917
20.752
8.647
A
C2
8AD
3014
HETATM
A
D
C2
8AD
4
0.60
1
C
28.85
9.216
22.155
8.859
A
C2
8AD
3014
HETATM
B
D
C2
8AD
4
0.20
1
C
48.09
8.062
20.463
7.311
A
C3
8AD
3014
HETATM
A
D
C3
8AD
4
0.60
1
C
24.47
9.430
22.548
10.160
A
C3
8AD
3014
HETATM
B
D
C3
8AD
4
0.20
1
C
36.10
9.072
21.053
6.523
A
C4
8AD
3014
HETATM
A
D
C4
8AD
4
0.60
1
C
24.55
10.412
23.487
10.543
A
C4
8AD
3014
HETATM
B
D
C4
8AD
4
0.20
1
C
23.75
12.504
24.236
6.123
A
C5
8AD
3014
HETATM
A
D
C5
8AD
4
0.60
1
C
14.48
13.938
26.346
9.252
A
C5
8AD
3014
HETATM
B
D
C5
8AD
4
0.20
1
C
33.06
13.456
25.108
6.649
A
C6
8AD
3014
HETATM
A
D
C6
8AD
4
0.60
1
C
12.06
14.791
26.948
8.340
A
C6
8AD
3014
HETATM
B
D
C6
8AD
4
0.20
1
C
24.74
13.433
25.467
7.992
A
C7
8AD
3014
HETATM
A
D
C7
8AD
4
0.60
1
C
21.10
14.670
26.649
6.982
A
C7
8AD
3014
HETATM
B
D
C7
8AD
4
0.20
1
C
30.35
12.527
24.854
8.831
A
C8
8AD
3014
HETATM
A
D
C8
8AD
4
0.60
1
C
22.86
13.697
25.756
6.555
A
C8
8AD
3014
HETATM
B
D
C8
8AD
4
0.20
1
C
23.95
10.581
23.319
9.179
A
C9
8AD
3014
HETATM
A
D
C9
8AD
4
0.60
1
C
20.98
11.845
24.148
7.097
A
C9
8AD
3014
HETATM
B
D
C9
8AD
4
0.20
1
C
29.99
10.802
22.686
6.450
A
N10
8AD
3014
HETATM
A
D
N10
8AD
4
0.60
1
N
29.24
12.186
24.904
9.774
A
N10
8AD
3014
HETATM
B
D
N10
8AD
4
0.20
1
N
29.18
9.737
22.342
8.567
A
C11
8AD
3014
HETATM
A
D
C11
8AD
4
0.60
1
C
21.77
11.028
23.596
8.129
A
C11
8AD
3014
HETATM
B
D
C11
8AD
4
0.20
1
C
20.41
9.899
22.030
7.161
A
C12
8AD
3014
HETATM
A
D
C12
8AD
4
0.60
1
C
22.30
11.254
24.003
9.503
A
C12
8AD
3014
HETATM
B
D
C12
8AD
4
0.20
1
C
20.26
11.589
23.904
8.373
A
C13
8AD
3014
HETATM
A
D
C13
8AD
4
0.60
1
C
23.95
12.833
25.096
7.462
A
C13
8AD
3014
HETATM
B
D
C13
8AD
4
0.20
1
C
17.86
11.632
23.551
6.980
A
C14
8AD
3014
HETATM
A
D
C14
8AD
4
0.60
1
C
22.73
12.969
25.428
8.859
A
C14
8AD
3014
HETATM
B
D
C14
8AD
4
0.20
1
C
30.53
10.464
23.658
10.489
A
N9
8AD
3014
HETATM
A
D
N9
8AD
4
0.60
1
N
7.71
11.587
23.846
5.796
A
N9
8AD
3014
HETATM
B
D
N9
8AD
4
0.20
1
N
27.80
28.880
13.530
20.208
B
CO
CO
4001
HETATM
E
CO
CO
3
0.50
1
CO
27.51
16.670
20.246
15.415
A
O
HOH
4006
HETATM
F
O
HOH
5
1.00
1
O
34.92
15.432
19.499
17.911
A
O
HOH
4010
HETATM
F
O
HOH
5
1.00
1
O
44.41
10.285
26.584
20.208
A
O
HOH
4016
HETATM
F
O
HOH
5
0.50
1
O
43.09
15.690
21.390
19.827
A
O
HOH
4017
HETATM
F
O
HOH
5
1.00
1
O
51.23
21.660
13.292
5.874
A
O
HOH
4018
HETATM
F
O
HOH
5
0.50
1
O
27.81
15.489
26.584
0.000
B
O
HOH
4003
HETATM
G
O
HOH
5
0.25
1
O
25.80
24.431
7.497
15.298
B
O
HOH
4004
HETATM
G
O
HOH
5
1.00
1
O
46.50
21.015
21.261
1.999
B
O
HOH
4005
HETATM
G
O
HOH
5
1.00
1
O
20.33
30.104
11.715
19.643
B
O
HOH
4007
HETATM
G
O
HOH
5
0.50
1
O
37.11
23.951
17.525
8.014
B
O
HOH
4008
HETATM
G
O
HOH
5
1.00
1
O
18.75
30.495
14.195
19.736
B
O
HOH
4009
HETATM
G
O
HOH
5
0.50
1
O
39.40
23.453
9.021
20.163
B
O
HOH
4011
HETATM
G
O
HOH
5
1.00
1
O
35.71
31.977
15.443
17.280
B
O
HOH
4012
HETATM
G
O
HOH
5
1.00
1
O
41.50
32.838
11.839
19.171
B
O
HOH
4013
HETATM
G
O
HOH
5
1.00
1
O
32.79
21.354
18.572
7.158
B
O
HOH
4014
HETATM
G
O
HOH
5
1.00
1
O
29.97
15.048
25.680
1.778
B
O
HOH
4015
HETATM
G
O
HOH
5
0.50
1
O
42.81
30.297
9.347
20.691
B
O
HOH
4019
HETATM
G
O
HOH
5
1.00
1
O
34.48
22.393
20.175
5.368
B
O
HOH
4020
HETATM
G
O
HOH
5
1.00
1
O
45.59
27.385
19.319
14.940
B
O
HOH
4021
HETATM
G
O
HOH
5
1.00
1
O
0.4838
0.0950
-0.0719
0.5175
-0.0006
0.3731
A
BR
BRU
1003
A
BR
BRU
2
BR
0.5871
0.1529
0.0741
0.3982
0.0006
0.3439
B
BR
BRU
2003
B
BR
BRU
3
BR
0.5889
0.1416
0.0975
0.5953
-0.0001
0.4025
A
CO
CO
4002
C
CO
CO
CO
0.2542
0.0000
-0.0081
0.4496
0.0000
0.3524
B
CO
CO
4001
E
CO
CO
CO
0.034626
0.000000
0.000000
0.000000
0.018808
0.000000
0.000000
0.000000
0.024743
0.000000
0.000000
0.000000
Adams, A.
Guss, J.M.
Collyer, C.A.
Denny, W.A.
Wakelin, L.P.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
28.880
53.168
40.416
C20 H24 N4 O
336.431
9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE
non-polymer
C9 H12 Br N2 O8 P
387.078
n
5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
Co 2
58.933
COBALT (II) ION
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
N
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
N
15
N
N
N
16
N
C
N
17
N
O
N
18
N
N
N
19
N
N
N
20
N
C
N
21
N
C
N
22
N
C
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
N
N
51
N
C
N
52
N
N
N
53
N
C
N
54
N
C
N
55
N
C
N
56
N
O
N
57
N
O
N
58
N
BR
N
59
R
C
N
60
N
C
N
61
S
C
N
62
R
C
N
63
N
O
N
64
N
O
N
65
N
C
N
66
N
O
N
67
N
P
N
68
N
O
N
69
N
O
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
CO
N
84
N
O
N
85
N
P
N
86
N
O
N
87
N
O
N
88
N
O
N
89
N
C
N
90
R
C
N
91
N
O
N
92
S
C
N
93
N
O
N
94
N
C
N
95
R
C
Y
96
N
N
Y
97
N
C
Y
98
N
N
Y
99
N
C
Y
100
N
C
N
101
N
N
Y
102
N
N
Y
103
N
C
Y
104
N
N
Y
105
N
C
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
O
N
121
N
P
N
122
N
O
N
123
N
O
N
124
N
O
N
125
N
C
N
126
R
C
N
127
N
O
N
128
S
C
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
N
N
133
N
C
N
134
N
O
N
135
N
N
N
136
N
C
N
137
N
N
N
138
N
C
N
139
N
C
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
O
N
155
N
P
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
C
N
160
R
C
N
161
N
O
N
162
S
C
N
163
N
O
N
164
N
C
N
165
R
C
Y
166
N
N
Y
167
N
C
Y
168
N
N
Y
169
N
C
N
170
N
C
N
171
N
O
N
172
N
N
N
173
N
C
N
174
N
N
N
175
N
N
Y
176
N
C
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
N
H
N
193
N
H
Y
1
N
doub
Y
2
N
sing
N
3
N
sing
Y
4
N
sing
N
5
N
sing
Y
6
N
doub
N
7
N
sing
Y
8
N
sing
N
9
N
sing
Y
10
N
doub
Y
11
N
sing
N
12
N
sing
Y
13
N
sing
N
14
N
sing
Y
15
N
doub
N
16
N
sing
Y
17
N
sing
N
18
N
sing
Y
19
N
doub
Y
20
N
sing
N
21
N
sing
Y
22
N
doub
Y
23
N
sing
Y
24
N
sing
Y
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
Y
109
N
sing
Y
110
N
sing
Y
111
N
doub
N
112
N
sing
Y
113
N
sing
Y
114
N
sing
Y
115
N
doub
N
116
N
sing
Y
117
N
doub
N
118
N
sing
N
119
N
sing
Y
120
N
sing
Y
121
N
doub
N
122
N
sing
Y
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
28
4244
4253
10.1093/nar/28.21.4244
11058124
A novel form of intercalation involving four DNA duplexes in an acridine-4-carboxamide complex of d(CGTACG)(2).
2000
10.2210/pdb1fn1/pdb
pdb_00001fn1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
1999-04-29
ADSC QUANTUM 1
MAD
M
x-ray
1
0.8920
1.0
14-BM-D
APS
0.8920
SYNCHROTRON
APS BEAMLINE 14-BM-D
KNOWN TO BE A GOOD SEQUENCE FOR INTERCALATION
1584.906
DNA (5'-D(P*GP*(BRO)UP*AP*CP*G)-3')
1
syn
polymer
KNOWN TO BE A GOOD SEQUENCE FOR INTERCALATION
1874.087
DNA (5'-D(*CP*GP*(BRO)UP*AP*CP*G)-3')
1
syn
polymer
58.933
COBALT (II) ION
2
syn
non-polymer
336.431
9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE
1
syn
non-polymer
18.015
water
19
nat
water
no
yes
(DG)(BRU)(DA)(DC)(DG)
GUACG
A
polydeoxyribonucleotide
no
yes
(DC)(DG)(BRU)(DA)(DC)(DG)
CGUACG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
1
2.16
43.0
VAPOR DIFFUSION
6.5
MPD, sodium cacodylate, magnesium acetate, cobalt(II) chloride, spermine, pH 6.5, VAPOR DIFFUSION, temperature 285K
285
sodium cacodylate
1
magnesium acetate
1
CoCl2
1
spermine
1
MPD
1
MPD
2
-8.993
1
19
A
1002
B
2005
1.438
A_DG1002:DC2005_B
1
5.109
-0.422
0.011
-0.104
1.924
1
20
A
1003
B
2004
2.651
A_BRU1003:DA2004_B
2
-3.072
0.023
0.225
-0.122
2.674
1
20
A
1004
B
2003
-4.728
A_DA1004:BRU2003_B
3
3.639
0.159
-0.111
-0.139
13.466
1
19
A
1005
B
2002
3.992
A_DC1005:DG2002_B
4
-1.144
0.355
-0.166
-0.071
3.072
27.502
A
A
1002
1003
7.023
B
B
2005
2004
3.128
3.330
-0.148
-0.313
AA_DG1002BRU1003:DA2004DC2005_BB
1
-1.201
2.533
27.278
-1.437
0.031
3.117
37.804
A
A
1003
1004
2.547
B
B
2004
2003
3.160
1.648
-0.066
-0.502
AA_BRU1003DA1004:BRU2003DA2004_BB
2
3.535
-5.464
37.609
-0.980
0.540
2.906
30.121
A
A
1004
1005
10.011
B
B
2003
2002
3.156
5.173
1.099
-0.692
AA_DA1004DC1005:DG2002BRU2003_BB
3
-2.260
4.374
29.599
-2.320
-2.546
pdbx_struct_special_symmetry
pdbx_unobs_or_zero_occ_atoms
software
struct_conn
chem_comp_atom
chem_comp_bond
database_2
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Advisory
Data collection
Derived calculations
Refinement description
Advisory
Data collection
Database references
Derived calculations
1
0
2000-10-30
1
1
2007-10-16
1
2
2011-07-13
1
3
2019-07-24
1
4
2024-02-07
_software.name
_struct_conn.pdbx_leaving_atom_flag
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
9-amino-(N-(2-dimethylamino)butyl)acridine-4-carboxamide bound to d(CGTACG)2
5-F-9-amino-(N-(2-dimethylamino)ethyl-acridine-4-carboxamide bound to d(CGTACG)2
9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamide bound to d(CGTACG)2
6-Br-9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamide bound to d(CG(Br)ACG)2
RCSB
Y
RCSB
2000-08-19
REL
REL
CO
COBALT (II) ION
8AD
9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE
HOH
water
CO
4002
3
CO
CO
4002
A
8AD
3014
4
8AD
8AD
3014
A
CO
4001
3
CO
CO
4001
B
HOH
4006
5
HOH
HOH
4006
A
HOH
4010
5
HOH
HOH
4010
A
HOH
4016
5
HOH
HOH
4016
A
HOH
4017
5
HOH
HOH
4017
A
HOH
4018
5
HOH
HOH
4018
A
HOH
4003
5
HOH
HOH
4003
B
HOH
4004
5
HOH
HOH
4004
B
HOH
4005
5
HOH
HOH
4005
B
HOH
4007
5
HOH
HOH
4007
B
HOH
4008
5
HOH
HOH
4008
B
HOH
4009
5
HOH
HOH
4009
B
HOH
4011
5
HOH
HOH
4011
B
HOH
4012
5
HOH
HOH
4012
B
HOH
4013
5
HOH
HOH
4013
B
HOH
4014
5
HOH
HOH
4014
B
HOH
4015
5
HOH
HOH
4015
B
HOH
4019
5
HOH
HOH
4019
B
HOH
4020
5
HOH
HOH
4020
B
HOH
4021
5
HOH
HOH
4021
B
G
1002
n
1
DG
1002
A
U
1003
n
2
BRU
1003
A
A
1004
n
3
DA
1004
A
C
1005
n
4
DC
1005
A
G
1006
n
5
DG
1006
A
C
2001
n
1
DC
2001
B
G
2002
n
2
DG
2002
B
U
2003
n
3
BRU
2003
B
A
2004
n
4
DA
2004
B
C
2005
n
5
DC
2005
B
G
2006
n
6
DG
2006
B
0.218
0.238
568
7.9
7161
author_defined_assembly
2
dimeric
B
DG
2006
B
N7
DG
6
1_555
B
CO
4001
E
CO
CO
1_555
B
HOH
4007
G
O
HOH
1_555
85.9
B
DG
2006
B
N7
DG
6
1_555
B
CO
4001
E
CO
CO
1_555
B
HOH
4009
G
O
HOH
1_555
93.3
B
HOH
4007
G
O
HOH
1_555
B
CO
4001
E
CO
CO
1_555
B
HOH
4009
G
O
HOH
1_555
75.3
A
BRU
1003
A
BRU
2
DU
B
BRU
2003
B
BRU
3
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
8AD
3014
D
8AD
1
B
CO
4001
E
CO
1
A
HOH
4016
F
HOH
1
A
HOH
4018
F
HOH
1
B
HOH
4003
G
HOH
1
B
O5'
DC
2001
B
O5'
DC
1
0
Y
1
A
CD1
8AD
3014
D
CD1
8AD
1
1
N
1
A
OD1
8AD
3014
D
OD1
8AD
1
1
N
1
A
ND1
8AD
3014
D
ND1
8AD
1
1
N
1
A
ND2
8AD
3014
D
ND2
8AD
1
1
N
1
A
CD2
8AD
3014
D
CD2
8AD
1
1
N
1
A
CD3
8AD
3014
D
CD3
8AD
1
1
N
1
A
CD4
8AD
3014
D
CD4
8AD
1
1
N
1
A
CD5
8AD
3014
D
CD5
8AD
1
1
N
1
A
CD7
8AD
3014
D
CD7
8AD
1
1
N
1
A
CD8
8AD
3014
D
CD8
8AD
1
1
N
1
-7.73
0.80
109.40
101.67
A
A
A
O5'
C5'
C4'
DG
DG
DG
1002
1002
1002
N
1
11.25
1.40
114.30
125.55
A
A
A
N9
C1'
C2'
DG
DG
DG
1002
1002
1002
N
1
-9.12
0.70
108.00
98.88
A
A
A
O4'
C1'
N9
DG
DG
DG
1002
1002
1002
N
1
8.61
1.20
119.70
128.31
A
A
A
C3'
O3'
P
BRU
BRU
DA
1003
1003
1004
Y
1
9.28
1.50
119.60
128.88
A
A
A
OP1
P
OP2
DA
DA
DA
1004
1004
1004
N
1
-6.75
0.80
109.40
102.65
A
A
A
O5'
C5'
C4'
DA
DA
DA
1004
1004
1004
N
1
-11.98
1.60
120.90
108.92
A
A
A
P
O5'
C5'
DA
DA
DA
1004
1004
1004
N
1
-5.06
0.70
108.00
102.94
A
A
A
O4'
C1'
N9
DA
DA
DA
1004
1004
1004
N
1
10.55
1.50
119.60
130.15
A
A
A
OP1
P
OP2
DC
DC
DC
1005
1005
1005
N
1
-12.15
0.80
109.40
97.25
A
A
A
O5'
C5'
C4'
DC
DC
DC
1005
1005
1005
N
1
-6.74
1.00
110.10
103.36
A
A
A
C1'
O4'
C4'
DC
DC
DC
1005
1005
1005
N
1
-6.09
0.80
109.40
103.31
A
A
A
O5'
C5'
C4'
DG
DG
DG
1006
1006
1006
N
1
-6.04
0.70
108.00
101.96
A
A
A
O4'
C1'
N9
DG
DG
DG
1006
1006
1006
N
1
-2.74
0.40
106.40
103.66
A
A
A
C8
N9
C4
DG
DG
DG
1006
1006
1006
N
1
-4.05
0.60
126.00
121.95
A
A
A
N3
C4
N9
DG
DG
DG
1006
1006
1006
N
1
-4.61
0.70
119.90
115.29
A
A
A
N3
C2
N2
DG
DG
DG
1006
1006
1006
N
1
-7.45
0.80
109.40
101.95
B
B
B
O5'
C5'
C4'
DC
DC
DC
2001
2001
2001
N
1
-2.62
0.40
120.30
117.68
B
B
B
C6
N1
C2
DC
DC
DC
2001
2001
2001
N
1
-4.10
0.60
118.90
114.80
B
B
B
N1
C2
O2
DC
DC
DC
2001
2001
2001
N
1
-12.95
1.20
119.70
106.75
B
B
B
C3'
O3'
P
DC
DC
DG
2001
2001
2002
Y
1
-20.49
1.60
120.90
100.41
B
B
B
P
O5'
C5'
DG
DG
DG
2002
2002
2002
N
1
8.42
1.40
114.30
122.72
B
B
B
N9
C1'
C2'
DG
DG
DG
2002
2002
2002
N
1
-6.12
0.70
108.00
101.88
B
B
B
O4'
C1'
N9
DG
DG
DG
2002
2002
2002
N
1
-3.84
0.60
126.00
122.16
B
B
B
N3
C4
N9
DG
DG
DG
2002
2002
2002
N
1
12.06
1.50
119.60
131.66
B
B
B
OP1
P
OP2
DA
DA
DA
2004
2004
2004
N
1
-6.63
0.80
109.40
102.77
B
B
B
O5'
C5'
C4'
DA
DA
DA
2004
2004
2004
N
1
-6.33
0.80
109.40
103.07
B
B
B
O5'
C5'
C4'
DC
DC
DC
2005
2005
2005
N
1
-6.66
0.80
109.40
102.74
B
B
B
O5'
C5'
C4'
DG
DG
DG
2006
2006
2006
N
1
9.85
1.40
114.30
124.15
B
B
B
N9
C1'
C2'
DG
DG
DG
2006
2006
2006
N
1
-6.45
0.70
108.00
101.55
B
B
B
O4'
C1'
N9
DG
DG
DG
2006
2006
2006
N
1
A
A
C5'
C4'
DG
DG
1002
1002
0.063
0.007
1.512
1.575
N
1
A
A
O4'
C1'
DG
DG
1002
1002
0.071
0.011
1.420
1.491
N
1
A
A
O3'
C3'
DG
DG
1002
1002
-0.084
0.006
1.419
1.335
N
1
A
A
O3'
P
DG
BRU
1002
1003
0.081
0.012
1.607
1.688
Y
1
A
A
C5'
C4'
DA
DA
1004
1004
0.060
0.007
1.512
1.572
N
1
A
A
O3'
C3'
DA
DA
1004
1004
-0.099
0.006
1.419
1.320
N
1
A
A
C5'
C4'
DC
DC
1005
1005
0.073
0.007
1.512
1.585
N
1
A
A
O3'
C3'
DC
DC
1005
1005
-0.109
0.006
1.419
1.310
N
1
A
A
C5'
C4'
DG
DG
1006
1006
0.067
0.007
1.512
1.579
N
1
A
A
O4'
C1'
DG
DG
1006
1006
0.067
0.011
1.420
1.487
N
1
A
A
O3'
C3'
DG
DG
1006
1006
-0.089
0.006
1.419
1.330
N
1
B
B
C5'
C4'
DC
DC
2001
2001
0.070
0.007
1.512
1.582
N
1
B
B
O4'
C1'
DC
DC
2001
2001
0.076
0.011
1.420
1.496
N
1
B
B
O3'
C3'
DC
DC
2001
2001
-0.098
0.006
1.419
1.321
N
1
B
B
C5'
C4'
DG
DG
2002
2002
0.063
0.007
1.512
1.575
N
1
B
B
O4'
C1'
DG
DG
2002
2002
0.078
0.011
1.420
1.498
N
1
B
B
O3'
C3'
DG
DG
2002
2002
-0.123
0.006
1.419
1.296
N
1
B
B
O3'
P
BRU
DA
2003
2004
0.083
0.012
1.607
1.690
Y
1
B
B
C5'
C4'
DA
DA
2004
2004
0.067
0.007
1.512
1.579
N
1
B
B
O3'
C3'
DA
DA
2004
2004
-0.078
0.006
1.419
1.341
N
1
B
B
P
OP2
DC
DC
2005
2005
-0.108
0.017
1.485
1.377
N
1
B
B
C5'
C4'
DC
DC
2005
2005
0.066
0.007
1.512
1.578
N
1
B
B
O3'
C3'
DC
DC
2005
2005
-0.065
0.006
1.419
1.354
N
1
B
B
C5'
C4'
DG
DG
2006
2006
0.074
0.007
1.512
1.586
N
1
B
B
O4'
C1'
DG
DG
2006
2006
0.080
0.011
1.420
1.500
N
1
B
B
O3'
C3'
DG
DG
2006
2006
-0.064
0.006
1.419
1.355
N
0.24
0.23
0.23
0.23
1.60
40.0
1123
608
7785
7785
2727
7.8
100.0
Random
1
FREE R
0.0
0.0
MAD
Shelx 2000
MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228
0
251.75
1.60
40.0
19
275
34
222
0
0.025
0.010
0.038
0.0145
0.000
0.010
0.010
0.000
0.075
0.000
20.3
1.60
40.0
1FN1
4345
4345
0.0
0.0
0.029
1
37.0
5.0
98.1
0.075
1.60
1.66
9.1
739
1.9
95.0
refinement
SHELXL-97
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE OF 9-AMINO-(N-(2-DIMETHYLAMINO)BUTYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CG(5BR)UACG)2
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
5
N
N
covale
1.688
both
A
DG
1002
A
O3'
DG
1
1_555
A
BRU
1003
A
P
BRU
2
1_555
covale
1.643
both
A
BRU
1003
A
O3'
BRU
2
1_555
A
DA
1004
A
P
DA
3
1_555
covale
1.663
both
B
DG
2002
B
O3'
DG
2
1_555
B
BRU
2003
B
P
BRU
3
1_555
covale
1.690
both
B
BRU
2003
B
O3'
BRU
3
1_555
B
DA
2004
B
P
DA
4
1_555
metalc
2.096
A
DG
1002
A
N7
DG
1
1_555
A
CO
4002
C
CO
CO
1_555
metalc
2.195
B
DG
2006
B
N7
DG
6
1_555
B
CO
4001
E
CO
CO
1_555
metalc
2.261
B
CO
4001
E
CO
CO
1_555
B
HOH
4007
G
O
HOH
1_555
metalc
1.809
B
CO
4001
E
CO
CO
1_555
B
HOH
4009
G
O
HOH
1_555
hydrog
WATSON-CRICK
A
DG
1002
A
N1
DG
1
1_555
B
DC
2005
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
1002
A
N2
DG
1
1_555
B
DC
2005
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
1002
A
O6
DG
1
1_555
B
DC
2005
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
BRU
1003
A
N3
BRU
2
1_555
B
DA
2004
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
BRU
1003
A
O4
BRU
2
1_555
B
DA
2004
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
1004
A
N1
DA
3
1_555
B
BRU
2003
B
N3
BRU
3
1_555
hydrog
WATSON-CRICK
A
DA
1004
A
N6
DA
3
1_555
B
BRU
2003
B
O4
BRU
3
1_555
hydrog
WATSON-CRICK
A
DC
1005
A
N3
DC
4
1_555
B
DG
2002
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
1005
A
N4
DC
4
1_555
B
DG
2002
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
1005
A
O2
DC
4
1_555
B
DG
2002
B
N2
DG
2
1_555
DNA
9-aminoacridine-4-carboamide, hexanucleotide, intercalation, quadruplex, DNA
1FN1
PDB
1
1FN1
1FN1
PDB
2
1FN1
1002
1006
1FN1
1002
1006
1FN1
A
1
1
5
2001
2006
1FN1
2001
2006
1FN1
B
2
1
6
BINDING SITE FOR RESIDUE CO B 4001
B
CO
4001
Software
6
BINDING SITE FOR RESIDUE CO A 4002
A
CO
4002
Software
1
BINDING SITE FOR RESIDUE 8AD A 3014
A
8AD
3014
Software
5
B
DG
2006
B
DG
6
6
1_555
B
DG
2006
B
DG
6
6
3_756
B
HOH
4007
G
HOH
6
1_555
B
HOH
4007
G
HOH
6
3_756
B
HOH
4009
G
HOH
6
3_756
B
HOH
4009
G
HOH
6
1_555
A
DG
1002
A
DG
1
1
1_555
A
DC
1005
A
DC
4
5
1_555
A
DG
1006
A
DG
5
5
1_555
B
DC
2001
B
DC
1
5
3_655
B
DG
2002
B
DG
2
5
2_665
B
DG
2002
B
DG
2
5
1_555
21
orthorhombic
C 2 2 2