0.010856
0.006268
0.000000
0.000000
0.012536
0.000000
0.000000
0.000000
0.004739
0.00000
0.00000
0.00000
Norman, D.P.G.
Bruner, S.D.
Verdine, G.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
92.113
92.113
211.014
C5 H11 O6 P
198.111
1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
ABASIC DIDEOXYRIBOSE
DNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
N
C
N
8
R
C
N
9
N
O
N
10
N
C
N
11
S
C
N
12
N
O
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
N
N
25
S
C
N
26
N
C
N
27
N
O
N
28
N
C
N
29
N
O
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
N
N
38
S
C
N
39
N
C
N
40
N
O
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
N
N
45
N
C
N
46
N
N
N
47
N
N
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
N
N
65
S
C
N
66
N
C
N
67
N
O
N
68
N
C
N
69
N
C
N
70
N
O
N
71
N
N
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
O
N
88
N
O
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
CA
N
98
N
N
N
99
R
C
N
100
N
C
N
101
N
O
N
102
N
C
N
103
N
S
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
O
N
113
N
P
N
114
N
O
N
115
N
O
N
116
N
O
N
117
N
C
N
118
R
C
N
119
N
O
N
120
S
C
N
121
N
O
N
122
N
C
N
123
R
C
Y
124
N
N
Y
125
N
C
Y
126
N
N
Y
127
N
C
Y
128
N
C
N
129
N
N
Y
130
N
N
Y
131
N
C
Y
132
N
N
Y
133
N
C
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
O
N
149
N
P
N
150
N
O
N
151
N
O
N
152
N
O
N
153
N
C
N
154
R
C
N
155
N
O
N
156
S
C
N
157
N
O
N
158
N
C
N
159
R
C
N
160
N
N
N
161
N
C
N
162
N
O
N
163
N
N
N
164
N
C
N
165
N
N
N
166
N
C
N
167
N
C
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
O
N
183
N
P
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
C
N
188
R
C
N
189
N
O
N
190
S
C
N
191
N
O
N
192
N
C
N
193
R
C
Y
194
N
N
Y
195
N
C
Y
196
N
N
Y
197
N
C
N
198
N
C
N
199
N
O
N
200
N
N
N
201
N
C
N
202
N
N
N
203
N
N
Y
204
N
C
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
O
N
220
N
P
N
221
N
O
N
222
N
O
N
223
N
O
N
224
N
C
N
225
R
C
N
226
N
O
N
227
S
C
N
228
N
O
N
229
N
C
N
230
R
C
N
231
N
N
N
232
N
C
N
233
N
O
N
234
N
N
N
235
N
C
N
236
N
O
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
S
C
N
257
N
C
N
258
N
O
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
O
N
263
N
N
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
N
Y
311
N
C
Y
312
N
C
Y
313
N
N
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
S
C
N
333
N
C
N
334
N
C
N
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
O
N
354
N
C
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
N
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
N
402
N
C
N
403
N
S
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
N
N
441
S
C
N
442
N
C
N
443
N
O
N
444
N
C
N
445
N
C
N
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
N
462
N
O
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
N
N
472
S
C
N
473
N
C
N
474
N
O
N
475
R
C
N
476
N
O
N
477
N
C
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
N
N
489
S
C
N
490
N
C
N
491
N
O
N
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
N
Y
497
N
C
Y
498
N
C
Y
499
N
C
Y
500
N
C
Y
501
N
C
N
502
N
O
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
N
N
516
S
C
N
517
N
C
N
518
N
O
N
519
N
C
Y
520
N
C
Y
521
N
C
Y
522
N
C
Y
523
N
C
Y
524
N
C
Y
525
N
C
N
526
N
O
N
527
N
O
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
N
N
540
S
C
N
541
N
C
N
542
N
O
N
543
N
C
N
544
N
C
N
545
N
C
N
546
N
O
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
Y
129
N
sing
Y
130
N
sing
Y
131
N
doub
N
132
N
sing
Y
133
N
sing
Y
134
N
sing
Y
135
N
doub
N
136
N
sing
Y
137
N
doub
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
N
142
N
sing
Y
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
doub
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
Y
202
N
sing
Y
203
N
sing
Y
204
N
doub
N
205
N
sing
Y
206
N
sing
N
207
N
sing
Y
208
N
doub
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
Y
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
Y
420
N
doub
Y
421
N
sing
Y
422
N
sing
N
423
N
sing
Y
424
N
doub
N
425
N
sing
Y
426
N
doub
N
427
N
sing
Y
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
doub
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
Y
489
N
doub
Y
490
N
sing
Y
491
N
sing
N
492
N
sing
Y
493
N
doub
Y
494
N
sing
Y
495
N
sing
N
496
N
sing
Y
497
N
sing
Y
498
N
doub
N
499
N
sing
Y
500
N
doub
N
501
N
sing
Y
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
doub
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
Y
517
N
doub
Y
518
N
sing
Y
519
N
sing
N
520
N
sing
Y
521
N
doub
N
522
N
sing
Y
523
N
doub
N
524
N
sing
Y
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
doub
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
123
359
360
10.1021/ja003144m
11456534
Coupling of substrate recognition and catalysis by a human base-excision DNA repair protein.
2001
UK
Nature
NATUAS
0006
0028-0836
403
859
866
10.1038/35002510
Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA
2000
10.2210/pdb1fn7/pdb
pdb_00001fn7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2000-03-07
SBC-1
SINGLE WAVELENGTH
M
x-ray
1
1.0332
1.0
19-ID
APS
1.0332
SYNCHROTRON
APS BEAMLINE 19-ID
4635.010
DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3')
1
syn
polymer
4396.838
DNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3')
1
syn
polymer
35648.305
8-OXOGUANINE DNA GLYCOSYLASE 1
3.2.2.-
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
132
nat
water
HOGG1, DNA GLYCOSYLASE/AP LYASE
E.C.3.2.2.-
no
no
(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC)(DG)(DC)
GGTAGACCTGGACGC
C
polydeoxyribonucleotide
no
yes
(DG)(DC)(DG)(DT)(DC)(DC)(DA)(3DR)(DG)(DT)(DC)(DT)(DA)(DC)(DC)
GCGTCCANGTCTACC
D
polydeoxyribonucleotide
no
no
GSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRP
TPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGP
RLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGT
KVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ
GSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRP
TPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGP
RLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGT
KVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
PLASMID
PET30A-TRUNC.HOGG1
1
2.87
57.08
VAPOR DIFFUSION, HANGING DROP
6.5
100 mM sodium cacodylate pH 6.5, 200 mM calcium acetate, 16-18% PEG, VAPOR DIFFUSION, HANGING DROP, temperature 277K
277
sodium cacodylate
1
calcium acetate
1
PEG
1
PEG
2
14.707
C
1
D
30
-6.507
C_DG1:DC30_D
1
-25.156
0.143
-0.342
0.065
-8.740
1
19
C
2
D
29
-2.812
C_DG2:DC29_D
2
4.287
-1.107
0.019
-0.154
-21.211
1
20
C
3
D
28
-10.693
C_DT3:DA28_D
3
-11.621
-1.050
0.680
-0.007
-20.640
1
20
C
4
D
27
-1.427
C_DA4:DT27_D
4
-9.279
-1.197
-0.363
-0.288
-0.915
1
19
C
5
D
26
5.565
C_DG5:DC26_D
5
-10.093
-0.080
-0.225
-0.072
0.786
1
20
C
6
D
25
-0.084
C_DA6:DT25_D
6
-15.402
0.461
-0.338
-0.087
16.782
1
19
C
7
D
24
-2.105
C_DC7:DG24_D
7
8.010
0.144
-0.208
-0.250
-8.842
1
20
C
9
D
22
2.243
C_DT9:DA22_D
8
-10.962
-0.778
-0.092
-0.298
12.125
1
19
C
10
D
21
11.975
C_DG10:DC21_D
9
-7.938
0.407
0.303
0.129
13.570
1
C
11
D
20
6.432
C_DG11:DC20_D
10
-11.306
-0.519
0.710
0.331
2.387
1
20
C
12
D
19
-5.714
C_DA12:DT19_D
11
-14.546
-1.024
0.317
-0.722
0.888
1
19
C
13
D
18
-6.468
C_DC13:DG18_D
12
-16.039
-0.488
0.083
-0.111
-15.969
1
C
14
D
17
6.395
C_DG14:DC17_D
13
-29.482
1.404
0.058
0.456
3.731
35.753
C
C
1
2
23.370
D
D
30
29
4.057
13.947
1.239
0.457
CC_DG1DG2:DC29DC30_DD
1
-4.737
7.939
32.669
-1.767
-2.872
3.552
31.945
C
C
2
3
11.908
D
D
29
28
3.740
6.466
-1.158
-1.361
CC_DG2DT3:DA28DC29_DD
2
-6.525
12.017
30.629
-3.808
0.757
3.280
40.150
C
C
3
4
3.246
D
D
28
27
3.279
2.226
0.039
0.133
CC_DT3DA4:DT27DA28_DD
3
1.752
-2.554
40.054
-0.060
0.143
2.940
39.902
C
C
4
5
1.198
D
D
27
26
2.914
0.816
-0.295
0.611
CC_DA4DG5:DC26DT27_DD
4
-4.536
6.661
39.646
0.810
-0.037
3.216
33.866
C
C
5
6
-6.236
D
D
26
25
3.280
-3.626
-0.733
0.314
CC_DG5DA6:DT25DC26_DD
5
0.628
-1.080
33.671
1.121
1.358
2.745
28.240
C
C
6
7
8.835
D
D
25
24
2.859
4.291
0.717
-0.181
CC_DA6DC7:DG24DT25_DD
6
-1.965
4.045
27.850
-1.232
-1.865
2.929
32.682
C
C
9
10
5.339
D
D
22
21
2.864
3.000
0.662
1.113
CC_DT9DG10:DC21DA22_DD
7
-1.092
1.944
32.530
1.518
-1.344
3.362
36.614
C
C
10
11
6.506
D
D
21
20
3.241
4.065
-0.897
0.415
CC_DG10DG11:DC20DC21_DD
8
-5.454
8.730
35.997
0.091
0.665
3.503
33.549
C
C
11
12
-6.851
D
D
20
19
3.415
-3.945
-0.649
-1.164
CC_DG11DA12:DT19DC20_DD
9
1.122
-1.949
33.305
-1.330
1.319
3.231
37.226
C
C
12
13
3.799
D
D
19
18
3.229
2.419
0.455
-0.339
CC_DA12DC13:DG18DT19_DD
10
4.156
-6.527
36.925
-0.850
-0.165
3.929
48.545
C
C
13
14
14.759
D
D
18
17
3.826
11.992
0.515
0.754
CC_DC13DG14:DC17DG18_DD
11
6.255
-7.698
46.733
-0.203
-0.043
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-04-21
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
1EBM contains a catalytically inactive mutant bound to an oxoG-containing DNA
NDB
Y
NDB
2000-08-21
REL
REL
CA
CALCIUM ION
HOH
water
CA
1001
4
CA
CA
1001
D
HOH
23
5
HOH
HOH
23
C
HOH
41
5
HOH
HOH
41
C
HOH
115
5
HOH
HOH
115
C
HOH
120
5
HOH
HOH
120
C
HOH
135
5
HOH
HOH
135
C
HOH
136
5
HOH
HOH
136
C
HOH
16
5
HOH
HOH
1002
D
HOH
89
5
HOH
HOH
1003
D
HOH
92
5
HOH
HOH
1004
D
HOH
100
5
HOH
HOH
1005
D
HOH
107
5
HOH
HOH
1006
D
HOH
113
5
HOH
HOH
1007
D
HOH
149
5
HOH
HOH
1008
D
HOH
1
5
HOH
HOH
326
A
HOH
2
5
HOH
HOH
327
A
HOH
4
5
HOH
HOH
328
A
HOH
5
5
HOH
HOH
329
A
HOH
6
5
HOH
HOH
330
A
HOH
9
5
HOH
HOH
331
A
HOH
10
5
HOH
HOH
332
A
HOH
11
5
HOH
HOH
333
A
HOH
12
5
HOH
HOH
334
A
HOH
13
5
HOH
HOH
335
A
HOH
14
5
HOH
HOH
336
A
HOH
15
5
HOH
HOH
337
A
HOH
17
5
HOH
HOH
338
A
HOH
18
5
HOH
HOH
339
A
HOH
19
5
HOH
HOH
340
A
HOH
21
5
HOH
HOH
341
A
HOH
22
5
HOH
HOH
342
A
HOH
24
5
HOH
HOH
343
A
HOH
25
5
HOH
HOH
344
A
HOH
26
5
HOH
HOH
345
A
HOH
27
5
HOH
HOH
346
A
HOH
28
5
HOH
HOH
347
A
HOH
29
5
HOH
HOH
348
A
HOH
30
5
HOH
HOH
349
A
HOH
31
5
HOH
HOH
350
A
HOH
32
5
HOH
HOH
351
A
HOH
33
5
HOH
HOH
352
A
HOH
36
5
HOH
HOH
353
A
HOH
37
5
HOH
HOH
354
A
HOH
39
5
HOH
HOH
355
A
HOH
40
5
HOH
HOH
356
A
HOH
42
5
HOH
HOH
357
A
HOH
43
5
HOH
HOH
358
A
HOH
44
5
HOH
HOH
359
A
HOH
45
5
HOH
HOH
360
A
HOH
46
5
HOH
HOH
361
A
HOH
47
5
HOH
HOH
362
A
HOH
48
5
HOH
HOH
363
A
HOH
49
5
HOH
HOH
364
A
HOH
50
5
HOH
HOH
365
A
HOH
53
5
HOH
HOH
366
A
HOH
54
5
HOH
HOH
367
A
HOH
55
5
HOH
HOH
368
A
HOH
56
5
HOH
HOH
369
A
HOH
57
5
HOH
HOH
370
A
HOH
58
5
HOH
HOH
371
A
HOH
59
5
HOH
HOH
372
A
HOH
60
5
HOH
HOH
373
A
HOH
64
5
HOH
HOH
374
A
HOH
65
5
HOH
HOH
375
A
HOH
66
5
HOH
HOH
376
A
HOH
68
5
HOH
HOH
377
A
HOH
69
5
HOH
HOH
378
A
HOH
70
5
HOH
HOH
379
A
HOH
71
5
HOH
HOH
380
A
HOH
72
5
HOH
HOH
381
A
HOH
73
5
HOH
HOH
382
A
HOH
74
5
HOH
HOH
383
A
HOH
75
5
HOH
HOH
384
A
HOH
76
5
HOH
HOH
385
A
HOH
77
5
HOH
HOH
386
A
HOH
78
5
HOH
HOH
387
A
HOH
79
5
HOH
HOH
388
A
HOH
80
5
HOH
HOH
389
A
HOH
81
5
HOH
HOH
390
A
HOH
83
5
HOH
HOH
391
A
HOH
84
5
HOH
HOH
392
A
HOH
85
5
HOH
HOH
393
A
HOH
86
5
HOH
HOH
394
A
HOH
87
5
HOH
HOH
395
A
HOH
88
5
HOH
HOH
396
A
HOH
90
5
HOH
HOH
397
A
HOH
91
5
HOH
HOH
398
A
HOH
93
5
HOH
HOH
399
A
HOH
94
5
HOH
HOH
400
A
HOH
95
5
HOH
HOH
401
A
HOH
96
5
HOH
HOH
402
A
HOH
97
5
HOH
HOH
403
A
HOH
98
5
HOH
HOH
404
A
HOH
101
5
HOH
HOH
405
A
HOH
102
5
HOH
HOH
406
A
HOH
103
5
HOH
HOH
407
A
HOH
104
5
HOH
HOH
408
A
HOH
105
5
HOH
HOH
409
A
HOH
109
5
HOH
HOH
410
A
HOH
110
5
HOH
HOH
411
A
HOH
111
5
HOH
HOH
412
A
HOH
112
5
HOH
HOH
413
A
HOH
114
5
HOH
HOH
414
A
HOH
116
5
HOH
HOH
415
A
HOH
117
5
HOH
HOH
416
A
HOH
118
5
HOH
HOH
417
A
HOH
119
5
HOH
HOH
418
A
HOH
121
5
HOH
HOH
419
A
HOH
122
5
HOH
HOH
420
A
HOH
123
5
HOH
HOH
421
A
HOH
124
5
HOH
HOH
422
A
HOH
125
5
HOH
HOH
423
A
HOH
126
5
HOH
HOH
424
A
HOH
127
5
HOH
HOH
425
A
HOH
128
5
HOH
HOH
426
A
HOH
129
5
HOH
HOH
427
A
HOH
130
5
HOH
HOH
428
A
HOH
131
5
HOH
HOH
429
A
HOH
132
5
HOH
HOH
430
A
HOH
133
5
HOH
HOH
431
A
HOH
137
5
HOH
HOH
432
A
HOH
138
5
HOH
HOH
433
A
HOH
139
5
HOH
HOH
434
A
HOH
140
5
HOH
HOH
435
A
HOH
141
5
HOH
HOH
436
A
HOH
142
5
HOH
HOH
437
A
HOH
143
5
HOH
HOH
438
A
HOH
144
5
HOH
HOH
439
A
HOH
145
5
HOH
HOH
440
A
HOH
146
5
HOH
HOH
441
A
HOH
148
5
HOH
HOH
442
A
HOH
150
5
HOH
HOH
443
A
HOH
151
5
HOH
HOH
444
A
G
1
n
1
DG
1
C
G
2
n
2
DG
2
C
T
3
n
3
DT
3
C
A
4
n
4
DA
4
C
G
5
n
5
DG
5
C
A
6
n
6
DA
6
C
C
7
n
7
DC
7
C
C
8
n
8
DC
8
C
T
9
n
9
DT
9
C
G
10
n
10
DG
10
C
G
11
n
11
DG
11
C
A
12
n
12
DA
12
C
C
13
n
13
DC
13
C
G
14
n
14
DG
14
C
C
15
n
15
DC
15
C
G
16
n
1
DG
16
D
C
17
n
2
DC
17
D
G
18
n
3
DG
18
D
T
19
n
4
DT
19
D
C
20
n
5
DC
20
D
C
21
n
6
DC
21
D
A
22
n
7
DA
22
D
3DR
23
n
8
3DR
23
D
G
24
n
9
DG
24
D
T
25
n
10
DT
25
D
C
26
n
11
DC
26
D
T
27
n
12
DT
27
D
A
28
n
13
DA
28
D
C
29
n
14
DC
29
D
C
30
n
15
DC
30
D
GLY
9
n
1
GLY
9
A
SER
10
n
2
SER
10
A
GLU
11
n
3
GLU
11
A
GLY
12
n
4
GLY
12
A
HIS
13
n
5
HIS
13
A
ARG
14
n
6
ARG
14
A
THR
15
n
7
THR
15
A
LEU
16
n
8
LEU
16
A
ALA
17
n
9
ALA
17
A
SER
18
n
10
SER
18
A
THR
19
n
11
THR
19
A
PRO
20
n
12
PRO
20
A
ALA
21
n
13
ALA
21
A
LEU
22
n
14
LEU
22
A
TRP
23
n
15
TRP
23
A
ALA
24
n
16
ALA
24
A
SER
25
n
17
SER
25
A
ILE
26
n
18
ILE
26
A
PRO
27
n
19
PRO
27
A
CYS
28
n
20
CYS
28
A
PRO
29
n
21
PRO
29
A
ARG
30
n
22
ARG
30
A
SER
31
n
23
SER
31
A
GLU
32
n
24
GLU
32
A
LEU
33
n
25
LEU
33
A
ARG
34
n
26
ARG
34
A
LEU
35
n
27
LEU
35
A
ASP
36
n
28
ASP
36
A
LEU
37
n
29
LEU
37
A
VAL
38
n
30
VAL
38
A
LEU
39
n
31
LEU
39
A
PRO
40
n
32
PRO
40
A
SER
41
n
33
SER
41
A
GLY
42
n
34
GLY
42
A
GLN
43
n
35
GLN
43
A
SER
44
n
36
SER
44
A
PHE
45
n
37
PHE
45
A
ARG
46
n
38
ARG
46
A
TRP
47
n
39
TRP
47
A
ARG
48
n
40
ARG
48
A
GLU
49
n
41
GLU
49
A
GLN
50
n
42
GLN
50
A
SER
51
n
43
SER
51
A
PRO
52
n
44
PRO
52
A
ALA
53
n
45
ALA
53
A
HIS
54
n
46
HIS
54
A
TRP
55
n
47
TRP
55
A
SER
56
n
48
SER
56
A
GLY
57
n
49
GLY
57
A
VAL
58
n
50
VAL
58
A
LEU
59
n
51
LEU
59
A
ALA
60
n
52
ALA
60
A
ASP
61
n
53
ASP
61
A
GLN
62
n
54
GLN
62
A
VAL
63
n
55
VAL
63
A
TRP
64
n
56
TRP
64
A
THR
65
n
57
THR
65
A
LEU
66
n
58
LEU
66
A
THR
67
n
59
THR
67
A
GLN
68
n
60
GLN
68
A
THR
69
n
61
THR
69
A
GLU
70
n
62
GLU
70
A
GLU
71
n
63
GLU
71
A
GLN
72
n
64
GLN
72
A
LEU
73
n
65
LEU
73
A
HIS
74
n
66
HIS
74
A
CYS
75
n
67
CYS
75
A
THR
76
n
68
THR
76
A
VAL
77
n
69
VAL
77
A
TYR
78
n
70
TYR
78
A
ARG
79
n
71
ARG
79
A
n
72
80
A
n
73
81
A
n
74
82
A
SER
83
n
75
SER
83
A
GLN
84
n
76
GLN
84
A
ALA
85
n
77
ALA
85
A
SER
86
n
78
SER
86
A
ARG
87
n
79
ARG
87
A
PRO
88
n
80
PRO
88
A
THR
89
n
81
THR
89
A
PRO
90
n
82
PRO
90
A
ASP
91
n
83
ASP
91
A
GLU
92
n
84
GLU
92
A
LEU
93
n
85
LEU
93
A
GLU
94
n
86
GLU
94
A
ALA
95
n
87
ALA
95
A
VAL
96
n
88
VAL
96
A
ARG
97
n
89
ARG
97
A
LYS
98
n
90
LYS
98
A
TYR
99
n
91
TYR
99
A
PHE
100
n
92
PHE
100
A
GLN
101
n
93
GLN
101
A
LEU
102
n
94
LEU
102
A
ASP
103
n
95
ASP
103
A
VAL
104
n
96
VAL
104
A
THR
105
n
97
THR
105
A
LEU
106
n
98
LEU
106
A
ALA
107
n
99
ALA
107
A
GLN
108
n
100
GLN
108
A
LEU
109
n
101
LEU
109
A
TYR
110
n
102
TYR
110
A
HIS
111
n
103
HIS
111
A
HIS
112
n
104
HIS
112
A
TRP
113
n
105
TRP
113
A
GLY
114
n
106
GLY
114
A
SER
115
n
107
SER
115
A
VAL
116
n
108
VAL
116
A
ASP
117
n
109
ASP
117
A
SER
118
n
110
SER
118
A
HIS
119
n
111
HIS
119
A
PHE
120
n
112
PHE
120
A
GLN
121
n
113
GLN
121
A
GLU
122
n
114
GLU
122
A
VAL
123
n
115
VAL
123
A
ALA
124
n
116
ALA
124
A
GLN
125
n
117
GLN
125
A
LYS
126
n
118
LYS
126
A
PHE
127
n
119
PHE
127
A
GLN
128
n
120
GLN
128
A
GLY
129
n
121
GLY
129
A
VAL
130
n
122
VAL
130
A
ARG
131
n
123
ARG
131
A
LEU
132
n
124
LEU
132
A
LEU
133
n
125
LEU
133
A
ARG
134
n
126
ARG
134
A
GLN
135
n
127
GLN
135
A
ASP
136
n
128
ASP
136
A
PRO
137
n
129
PRO
137
A
ILE
138
n
130
ILE
138
A
GLU
139
n
131
GLU
139
A
CYS
140
n
132
CYS
140
A
LEU
141
n
133
LEU
141
A
PHE
142
n
134
PHE
142
A
SER
143
n
135
SER
143
A
PHE
144
n
136
PHE
144
A
ILE
145
n
137
ILE
145
A
CYS
146
n
138
CYS
146
A
SER
147
n
139
SER
147
A
SER
148
n
140
SER
148
A
ASN
149
n
141
ASN
149
A
ASN
150
n
142
ASN
150
A
ASN
151
n
143
ASN
151
A
ILE
152
n
144
ILE
152
A
ALA
153
n
145
ALA
153
A
ARG
154
n
146
ARG
154
A
ILE
155
n
147
ILE
155
A
THR
156
n
148
THR
156
A
GLY
157
n
149
GLY
157
A
MET
158
n
150
MET
158
A
VAL
159
n
151
VAL
159
A
GLU
160
n
152
GLU
160
A
ARG
161
n
153
ARG
161
A
LEU
162
n
154
LEU
162
A
CYS
163
n
155
CYS
163
A
GLN
164
n
156
GLN
164
A
ALA
165
n
157
ALA
165
A
PHE
166
n
158
PHE
166
A
GLY
167
n
159
GLY
167
A
PRO
168
n
160
PRO
168
A
ARG
169
n
161
ARG
169
A
LEU
170
n
162
LEU
170
A
ILE
171
n
163
ILE
171
A
GLN
172
n
164
GLN
172
A
LEU
173
n
165
LEU
173
A
ASP
174
n
166
ASP
174
A
ASP
175
n
167
ASP
175
A
VAL
176
n
168
VAL
176
A
THR
177
n
169
THR
177
A
TYR
178
n
170
TYR
178
A
HIS
179
n
171
HIS
179
A
GLY
180
n
172
GLY
180
A
PHE
181
n
173
PHE
181
A
PRO
182
n
174
PRO
182
A
SER
183
n
175
SER
183
A
LEU
184
n
176
LEU
184
A
GLN
185
n
177
GLN
185
A
ALA
186
n
178
ALA
186
A
LEU
187
n
179
LEU
187
A
ALA
188
n
180
ALA
188
A
GLY
189
n
181
GLY
189
A
PRO
190
n
182
PRO
190
A
GLU
191
n
183
GLU
191
A
VAL
192
n
184
VAL
192
A
GLU
193
n
185
GLU
193
A
ALA
194
n
186
ALA
194
A
HIS
195
n
187
HIS
195
A
LEU
196
n
188
LEU
196
A
ARG
197
n
189
ARG
197
A
LYS
198
n
190
LYS
198
A
LEU
199
n
191
LEU
199
A
GLY
200
n
192
GLY
200
A
LEU
201
n
193
LEU
201
A
GLY
202
n
194
GLY
202
A
TYR
203
n
195
TYR
203
A
ARG
204
n
196
ARG
204
A
ALA
205
n
197
ALA
205
A
ARG
206
n
198
ARG
206
A
TYR
207
n
199
TYR
207
A
VAL
208
n
200
VAL
208
A
SER
209
n
201
SER
209
A
ALA
210
n
202
ALA
210
A
SER
211
n
203
SER
211
A
ALA
212
n
204
ALA
212
A
ARG
213
n
205
ARG
213
A
ALA
214
n
206
ALA
214
A
ILE
215
n
207
ILE
215
A
LEU
216
n
208
LEU
216
A
GLU
217
n
209
GLU
217
A
GLU
218
n
210
GLU
218
A
GLN
219
n
211
GLN
219
A
GLY
220
n
212
GLY
220
A
GLY
221
n
213
GLY
221
A
LEU
222
n
214
LEU
222
A
ALA
223
n
215
ALA
223
A
TRP
224
n
216
TRP
224
A
LEU
225
n
217
LEU
225
A
GLN
226
n
218
GLN
226
A
GLN
227
n
219
GLN
227
A
LEU
228
n
220
LEU
228
A
ARG
229
n
221
ARG
229
A
GLU
230
n
222
GLU
230
A
SER
231
n
223
SER
231
A
SER
232
n
224
SER
232
A
TYR
233
n
225
TYR
233
A
GLU
234
n
226
GLU
234
A
GLU
235
n
227
GLU
235
A
ALA
236
n
228
ALA
236
A
HIS
237
n
229
HIS
237
A
LYS
238
n
230
LYS
238
A
ALA
239
n
231
ALA
239
A
LEU
240
n
232
LEU
240
A
CYS
241
n
233
CYS
241
A
ILE
242
n
234
ILE
242
A
LEU
243
n
235
LEU
243
A
PRO
244
n
236
PRO
244
A
GLY
245
n
237
GLY
245
A
VAL
246
n
238
VAL
246
A
GLY
247
n
239
GLY
247
A
THR
248
n
240
THR
248
A
LYS
249
n
241
LYS
249
A
VAL
250
n
242
VAL
250
A
ALA
251
n
243
ALA
251
A
ASP
252
n
244
ASP
252
A
CYS
253
n
245
CYS
253
A
ILE
254
n
246
ILE
254
A
CYS
255
n
247
CYS
255
A
LEU
256
n
248
LEU
256
A
MET
257
n
249
MET
257
A
ALA
258
n
250
ALA
258
A
LEU
259
n
251
LEU
259
A
ASP
260
n
252
ASP
260
A
LYS
261
n
253
LYS
261
A
PRO
262
n
254
PRO
262
A
GLN
263
n
255
GLN
263
A
ALA
264
n
256
ALA
264
A
VAL
265
n
257
VAL
265
A
PRO
266
n
258
PRO
266
A
VAL
267
n
259
VAL
267
A
ASP
268
n
260
ASP
268
A
VAL
269
n
261
VAL
269
A
HIS
270
n
262
HIS
270
A
MET
271
n
263
MET
271
A
TRP
272
n
264
TRP
272
A
HIS
273
n
265
HIS
273
A
ILE
274
n
266
ILE
274
A
ALA
275
n
267
ALA
275
A
GLN
276
n
268
GLN
276
A
ARG
277
n
269
ARG
277
A
ASP
278
n
270
ASP
278
A
TYR
279
n
271
TYR
279
A
SER
280
n
272
SER
280
A
TRP
281
n
273
TRP
281
A
HIS
282
n
274
HIS
282
A
PRO
283
n
275
PRO
283
A
THR
284
n
276
THR
284
A
THR
285
n
277
THR
285
A
SER
286
n
278
SER
286
A
GLN
287
n
279
GLN
287
A
ALA
288
n
280
ALA
288
A
LYS
289
n
281
LYS
289
A
GLY
290
n
282
GLY
290
A
PRO
291
n
283
PRO
291
A
SER
292
n
284
SER
292
A
PRO
293
n
285
PRO
293
A
GLN
294
n
286
GLN
294
A
THR
295
n
287
THR
295
A
ASN
296
n
288
ASN
296
A
LYS
297
n
289
LYS
297
A
GLU
298
n
290
GLU
298
A
LEU
299
n
291
LEU
299
A
GLY
300
n
292
GLY
300
A
ASN
301
n
293
ASN
301
A
PHE
302
n
294
PHE
302
A
PHE
303
n
295
PHE
303
A
ARG
304
n
296
ARG
304
A
SER
305
n
297
SER
305
A
LEU
306
n
298
LEU
306
A
TRP
307
n
299
TRP
307
A
GLY
308
n
300
GLY
308
A
PRO
309
n
301
PRO
309
A
TYR
310
n
302
TYR
310
A
ALA
311
n
303
ALA
311
A
GLY
312
n
304
GLY
312
A
TRP
313
n
305
TRP
313
A
ALA
314
n
306
ALA
314
A
GLN
315
n
307
GLN
315
A
ALA
316
n
308
ALA
316
A
VAL
317
n
309
VAL
317
A
LEU
318
n
310
LEU
318
A
PHE
319
n
311
PHE
319
A
SER
320
n
312
SER
320
A
ALA
321
n
313
ALA
321
A
ASP
322
n
314
ASP
322
A
LEU
323
n
315
LEU
323
A
ARG
324
n
316
ARG
324
A
GLN
325
n
317
GLN
325
A
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
26
C
O
ILE
18
A
N
LEU
73
C
N
LEU
65
A
N
TYR
78
C
N
TYR
70
A
O
VAL
63
C
O
VAL
55
A
O
LEU
66
C
O
LEU
58
A
N
TRP
55
C
N
TRP
47
A
N
SER
56
C
N
SER
48
A
O
ARG
48
C
O
ARG
40
A
N
LEU
173
C
N
LEU
165
A
O
VAL
176
C
O
VAL
168
1
A
CG
GLU
71
C
CG
GLU
63
1
Y
1
A
CD
GLU
71
C
CD
GLU
63
1
Y
1
A
OE1
GLU
71
C
OE1
GLU
63
1
Y
1
A
OE2
GLU
71
C
OE2
GLU
63
1
Y
1
A
CG
GLN
84
C
CG
GLN
76
1
Y
1
A
CD
GLN
84
C
CD
GLN
76
1
Y
1
A
OE1
GLN
84
C
OE1
GLN
76
1
Y
1
A
NE2
GLN
84
C
NE2
GLN
76
1
Y
1
A
CG
ARG
87
C
CG
ARG
79
1
Y
1
A
CD
ARG
87
C
CD
ARG
79
1
Y
1
A
NE
ARG
87
C
NE
ARG
79
1
Y
1
A
CZ
ARG
87
C
CZ
ARG
79
1
Y
1
A
NH1
ARG
87
C
NH1
ARG
79
1
Y
1
A
NH2
ARG
87
C
NH2
ARG
79
1
Y
1
A
CG
GLU
122
C
CG
GLU
114
1
Y
1
A
CD
GLU
122
C
CD
GLU
114
1
Y
1
A
OE1
GLU
122
C
OE1
GLU
114
1
Y
1
A
OE2
GLU
122
C
OE2
GLU
114
1
Y
1
A
CG
GLN
125
C
CG
GLN
117
1
Y
1
A
CD
GLN
125
C
CD
GLN
117
1
Y
1
A
OE1
GLN
125
C
OE1
GLN
117
1
Y
1
A
NE2
GLN
125
C
NE2
GLN
117
1
Y
1
A
CG
GLN
128
C
CG
GLN
120
1
Y
1
A
CD
GLN
128
C
CD
GLN
120
1
Y
1
A
OE1
GLN
128
C
OE1
GLN
120
1
Y
1
A
NE2
GLN
128
C
NE2
GLN
120
1
Y
1
A
CG
ARG
134
C
CG
ARG
126
1
Y
1
A
CD
ARG
134
C
CD
ARG
126
1
Y
1
A
NE
ARG
134
C
NE
ARG
126
1
Y
1
A
CZ
ARG
134
C
CZ
ARG
126
1
Y
1
A
NH1
ARG
134
C
NH1
ARG
126
1
Y
1
A
NH2
ARG
134
C
NH2
ARG
126
1
Y
1
A
CG
GLN
164
C
CG
GLN
156
1
Y
1
A
CD
GLN
164
C
CD
GLN
156
1
Y
1
A
OE1
GLN
164
C
OE1
GLN
156
1
Y
1
A
NE2
GLN
164
C
NE2
GLN
156
1
Y
1
A
CG
GLN
227
C
CG
GLN
219
1
Y
1
A
CD
GLN
227
C
CD
GLN
219
1
Y
1
A
OE1
GLN
227
C
OE1
GLN
219
1
Y
1
A
NE2
GLN
227
C
NE2
GLN
219
1
Y
1
A
OG
SER
286
C
OG
SER
278
1
Y
1
A
CG
LYS
289
C
CG
LYS
281
1
Y
1
A
CD
LYS
289
C
CD
LYS
281
1
Y
1
A
CE
LYS
289
C
CE
LYS
281
1
Y
1
A
NZ
LYS
289
C
NZ
LYS
281
1
Y
1
A
CG
GLN
294
C
CG
GLN
286
1
Y
1
A
CD
GLN
294
C
CD
GLN
286
1
Y
1
A
OE1
GLN
294
C
OE1
GLN
286
1
Y
1
A
NE2
GLN
294
C
NE2
GLN
286
1
Y
1
A
CG
GLN
325
C
CG
GLN
317
1
Y
1
A
CD
GLN
325
C
CD
GLN
317
1
Y
1
A
OE1
GLN
325
C
OE1
GLN
317
1
Y
1
A
NE2
GLN
325
C
NE2
GLN
317
1
Y
1
A
GLY
80
C
GLY
72
1
Y
1
A
ASP
81
C
ASP
73
1
Y
1
A
LYS
82
C
LYS
74
1
Y
1
A
A
OE1
N
GLU
LEU
32
106
2.19
1
A
A
O
O
CYS
HOH
241
425
2.19
1
A
A
O
O
HOH
HOH
410
410
1.78
1_555
10_665
1
A
CYS
28
-173.87
112.14
1
A
GLU
122
-64.24
-72.57
1
A
LEU
170
-102.69
-90.68
1
A
ASP
174
53.53
-127.27
1
A
GLN
287
-104.06
-78.14
1
A
PRO
309
-39.85
-37.08
PROTEIN_REP.PA
PROTEIN.TOP
DNA-RNA_REP.PA
DNA-RNA.TOP
WATER_REP.PARA
WATER.TOP
ION.PARAM
ION.TOP
40.6
4.05
6.93
0.00
4.05
0.00
-8.10
conformation of the abasic deoxyribose ring was determined by modeling it as RNA
(C3'-endo) and DNA (C2'-endo), and performing simulated annealing on
both models. When modeled in the C2'-endo conformation, R and Rfree
were lower, and the model fit the experimental Fo-Fc omit density
better
0.270
0.007
0.221
0.221
2.60
29.85
1505
17058
14841
10.1
87.0
RANDOM
294195.16
0.00
1
RESTRAINED
THROUGHOUT
2.0
1.0
FLAT MODEL
39.06
0.339
0.42
0.32
5.00
0.46
0.32
2.60
29.85
132
3171
1
598
2440
0.006
1.3
20.7
0.90
1.15
1.50
1.98
2.00
1.46
2.00
2.30
2.50
0.361
0.027
0.264
2.76
175
1752
6
9.1
69.9
35.4
2.6
30.0
1FN7
18214
17653
2.0
1.0
0.073
1
14.3
4.74
96.6
0.352
2.54
2.69
1757
3.15
99.8
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
COUPLING OF DAMAGE RECOGNITION AND CATALYSIS BY A HUMAN BASE-EXCISION DNA REPAIR PROTEIN
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
THR
19
C
THR
11
HELX_P
A
TRP
23
C
TRP
15
5
1
5
A
ARG
34
C
ARG
26
HELX_P
A
LEU
39
C
LEU
31
1
2
6
A
THR
89
C
THR
81
HELX_P
A
PHE
100
C
PHE
92
1
3
12
A
THR
105
C
THR
97
HELX_P
A
ASP
117
C
ASP
109
1
4
13
A
ASP
117
C
ASP
109
HELX_P
A
GLN
125
C
GLN
117
1
5
9
A
LYS
126
C
LYS
118
HELX_P
A
GLN
128
C
GLN
120
5
6
3
A
ASP
136
C
ASP
128
HELX_P
A
CYS
146
C
CYS
138
1
7
11
A
ASN
151
C
ASN
143
HELX_P
A
GLY
167
C
GLY
159
1
8
17
A
SER
183
C
SER
175
HELX_P
A
GLY
189
C
GLY
181
1
9
7
A
GLU
191
C
GLU
183
HELX_P
A
LYS
198
C
LYS
190
1
10
8
A
LEU
199
C
LEU
191
HELX_P
A
GLY
200
C
GLY
192
5
11
2
A
LEU
201
C
LEU
193
HELX_P
A
GLY
202
C
GLY
194
5
12
2
A
TYR
203
C
TYR
195
HELX_P
A
GLN
219
C
GLN
211
1
13
17
A
GLY
221
C
GLY
213
HELX_P
A
ARG
229
C
ARG
221
1
14
9
A
SER
232
C
SER
224
HELX_P
A
CYS
241
C
CYS
233
1
15
10
A
GLY
247
C
GLY
239
HELX_P
A
LEU
259
C
LEU
251
1
16
13
A
ASP
268
C
ASP
260
HELX_P
A
SER
280
C
SER
272
1
17
13
A
SER
292
C
SER
284
HELX_P
A
GLY
308
C
GLY
300
1
18
17
A
TYR
310
C
TYR
302
HELX_P
A
ARG
324
C
ARG
316
1
19
15
covale
1.606
both
D
DA
22
B
O3'
DA
7
1_555
D
3DR
23
B
P
3DR
8
1_555
covale
1.607
both
D
3DR
23
B
O3'
3DR
8
1_555
D
DG
24
B
P
DG
9
1_555
hydrog
DG-DC PAIR
C
DG
1
A
N1
DG
1
1_555
D
DC
30
B
N3
DC
15
1_555
hydrog
WATSON-CRICK
C
DG
2
A
N1
DG
2
1_555
D
DC
29
B
N3
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
2
A
N2
DG
2
1_555
D
DC
29
B
O2
DC
14
1_555
hydrog
WATSON-CRICK
C
DG
2
A
O6
DG
2
1_555
D
DC
29
B
N4
DC
14
1_555
hydrog
WATSON-CRICK
C
DT
3
A
N3
DT
3
1_555
D
DA
28
B
N1
DA
13
1_555
hydrog
WATSON-CRICK
C
DT
3
A
O4
DT
3
1_555
D
DA
28
B
N6
DA
13
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N1
DA
4
1_555
D
DT
27
B
N3
DT
12
1_555
hydrog
WATSON-CRICK
C
DA
4
A
N6
DA
4
1_555
D
DT
27
B
O4
DT
12
1_555
hydrog
WATSON-CRICK
C
DG
5
A
N1
DG
5
1_555
D
DC
26
B
N3
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
5
A
N2
DG
5
1_555
D
DC
26
B
O2
DC
11
1_555
hydrog
WATSON-CRICK
C
DG
5
A
O6
DG
5
1_555
D
DC
26
B
N4
DC
11
1_555
hydrog
WATSON-CRICK
C
DA
6
A
N1
DA
6
1_555
D
DT
25
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
C
DA
6
A
N6
DA
6
1_555
D
DT
25
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
C
DC
7
A
N3
DC
7
1_555
D
DG
24
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
7
A
N4
DC
7
1_555
D
DG
24
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
C
DC
7
A
O2
DC
7
1_555
D
DG
24
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
C
DT
9
A
N3
DT
9
1_555
D
DA
22
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
C
DT
9
A
O4
DT
9
1_555
D
DA
22
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
C
DG
10
A
N1
DG
10
1_555
D
DC
21
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
10
A
N2
DG
10
1_555
D
DC
21
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
10
A
O6
DG
10
1_555
D
DC
21
B
N4
DC
6
1_555
hydrog
DG-DC PAIR
C
DG
11
A
N1
DG
11
1_555
D
DC
20
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DA
12
A
N1
DA
12
1_555
D
DT
19
B
N3
DT
4
1_555
hydrog
WATSON-CRICK
C
DA
12
A
N6
DA
12
1_555
D
DT
19
B
O4
DT
4
1_555
hydrog
WATSON-CRICK
C
DC
13
A
N3
DC
13
1_555
D
DG
18
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
13
A
N4
DC
13
1_555
D
DG
18
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
13
A
O2
DC
13
1_555
D
DG
18
B
N2
DG
3
1_555
hydrog
DG-DC PAIR
C
DG
14
A
N2
DG
14
1_555
D
DC
17
B
O2
DC
2
1_555
HYDROLASE/DNA
DNA REPAIR, DNA GLYCOSYLASE, PROTEIN/DNA, Helix hairpin helix, base recognition, oxoguanine, hydroxyguanine, base flipping, flipped-out base, extrahelical DNA, mechanism-based inhibitor, base-exicision repair, AP lyase, DNA glycosidase, HYDROLASE-DNA COMPLEX
OGG1_HUMAN
UNP
3
12
O15527
1FN7
PDB
1
1FN7
1FN7
PDB
2
1FN7
12
325
1FN7
9
325
O15527
A
1
1
317
1
15
1FN7
1
15
1FN7
C
2
1
15
16
30
1FN7
16
30
1FN7
D
3
1
15
1
ARG
conflict
GLY
9
1FN7
A
O15527
UNP
9
1
1
ARG
conflict
SER
10
1FN7
A
O15527
UNP
10
2
1
MET
conflict
GLU
11
1FN7
A
O15527
UNP
11
3
5
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
24
C
ALA
16
A
PRO
27
C
PRO
19
A
GLN
72
C
GLN
64
A
TYR
78
C
TYR
70
A
GLN
62
C
GLN
54
A
GLN
68
C
GLN
60
A
HIS
54
C
HIS
46
A
LEU
59
C
LEU
51
A
ARG
48
C
ARG
40
A
SER
51
C
SER
43
A
ARG
169
C
ARG
161
A
LEU
173
C
LEU
165
A
VAL
176
C
VAL
168
A
HIS
179
C
HIS
171
179
hexagonal
P 65 2 2