0.010856 0.006268 0.000000 0.000000 0.012536 0.000000 0.000000 0.000000 0.004739 0.00000 0.00000 0.00000 Norman, D.P.G. Bruner, S.D. Verdine, G.L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 92.113 92.113 211.014 C5 H11 O6 P 198.111 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE ABASIC DIDEOXYRIBOSE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 N C N 8 R C N 9 N O N 10 N C N 11 S C N 12 N O N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N N N 25 S C N 26 N C N 27 N O N 28 N C N 29 N O N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N N N 38 S C N 39 N C N 40 N O N 41 N C N 42 N C N 43 N C N 44 N N N 45 N C N 46 N N N 47 N N N 48 N O N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N N N 65 S C N 66 N C N 67 N O N 68 N C N 69 N C N 70 N O N 71 N N N 72 N O N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 S C N 83 N C N 84 N O N 85 N C N 86 N C N 87 N O N 88 N O N 89 N O N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N CA N 98 N N N 99 R C N 100 N C N 101 N O N 102 N C N 103 N S N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N O N 113 N P N 114 N O N 115 N O N 116 N O N 117 N C N 118 R C N 119 N O N 120 S C N 121 N O N 122 N C N 123 R C Y 124 N N Y 125 N C Y 126 N N Y 127 N C Y 128 N C N 129 N N Y 130 N N Y 131 N C Y 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N P N 150 N O N 151 N O N 152 N O N 153 N C N 154 R C N 155 N O N 156 S C N 157 N O N 158 N C N 159 R C N 160 N N N 161 N C N 162 N O N 163 N N N 164 N C N 165 N N N 166 N C N 167 N C N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N P N 184 N O N 185 N O N 186 N O N 187 N C N 188 R C N 189 N O N 190 S C N 191 N O N 192 N C N 193 R C Y 194 N N Y 195 N C Y 196 N N Y 197 N C N 198 N C N 199 N O N 200 N N N 201 N C N 202 N N N 203 N N Y 204 N C N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N O N 220 N P N 221 N O N 222 N O N 223 N O N 224 N C N 225 R C N 226 N O N 227 S C N 228 N O N 229 N C N 230 R C N 231 N N N 232 N C N 233 N O N 234 N N N 235 N C N 236 N O N 237 N C N 238 N C N 239 N C N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N N N 256 S C N 257 N C N 258 N O N 259 N C N 260 N C N 261 N C N 262 N O N 263 N N N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N O N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 N C N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 N C Y 309 N C Y 310 N N Y 311 N C Y 312 N C Y 313 N N N 314 N O N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N O N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 S C N 333 N C N 334 N C N 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C N 355 N C N 356 N C N 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N C N 380 N N N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N C N 403 N S N 404 N C N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N N N 418 S C N 419 N C N 420 N O N 421 N C Y 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C N 428 N O N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N N N 441 S C N 442 N C N 443 N O N 444 N C N 445 N C N 446 N C N 447 N O N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N N N 458 S C N 459 N C N 460 N O N 461 N C N 462 N O N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N N N 472 S C N 473 N C N 474 N O N 475 R C N 476 N O N 477 N C N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N N N 489 S C N 490 N C N 491 N O N 492 N C Y 493 N C Y 494 N C Y 495 N C Y 496 N N Y 497 N C Y 498 N C Y 499 N C Y 500 N C Y 501 N C N 502 N O N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N N N 516 S C N 517 N C N 518 N O N 519 N C Y 520 N C Y 521 N C Y 522 N C Y 523 N C Y 524 N C Y 525 N C N 526 N O N 527 N O N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N N N 540 S C N 541 N C N 542 N O N 543 N C N 544 N C N 545 N C N 546 N O N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing Y 129 N sing Y 130 N sing Y 131 N doub N 132 N sing Y 133 N sing Y 134 N sing Y 135 N doub N 136 N sing Y 137 N doub N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub N 142 N sing Y 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N doub N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing Y 202 N sing Y 203 N sing Y 204 N doub N 205 N sing Y 206 N sing N 207 N sing Y 208 N doub N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N doub N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N doub N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing Y 312 N sing Y 313 N doub Y 314 N doub N 315 N sing Y 316 N sing N 317 N sing Y 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub N 425 N sing Y 426 N doub N 427 N sing Y 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N doub N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N doub N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N doub N 485 N sing N 486 N sing N 487 N sing N 488 N sing Y 489 N doub Y 490 N sing Y 491 N sing N 492 N sing Y 493 N doub Y 494 N sing Y 495 N sing N 496 N sing Y 497 N sing Y 498 N doub N 499 N sing Y 500 N doub N 501 N sing Y 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N doub N 513 N sing N 514 N sing N 515 N sing N 516 N sing Y 517 N doub Y 518 N sing Y 519 N sing N 520 N sing Y 521 N doub N 522 N sing Y 523 N doub N 524 N sing Y 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N doub N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 123 359 360 10.1021/ja003144m 11456534 Coupling of substrate recognition and catalysis by a human base-excision DNA repair protein. 2001 UK Nature NATUAS 0006 0028-0836 403 859 866 10.1038/35002510 Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA 2000 10.2210/pdb1fn7/pdb pdb_00001fn7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2000-03-07 SBC-1 SINGLE WAVELENGTH M x-ray 1 1.0332 1.0 19-ID APS 1.0332 SYNCHROTRON APS BEAMLINE 19-ID 4635.010 DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3') 1 syn polymer 4396.838 DNA (5'-D(*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3') 1 syn polymer 35648.305 8-OXOGUANINE DNA GLYCOSYLASE 1 3.2.2.- 1 man polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 132 nat water HOGG1, DNA GLYCOSYLASE/AP LYASE E.C.3.2.2.- no no (DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC)(DG)(DC) GGTAGACCTGGACGC C polydeoxyribonucleotide no yes (DG)(DC)(DG)(DT)(DC)(DC)(DA)(3DR)(DG)(DT)(DC)(DT)(DA)(DC)(DC) GCGTCCANGTCTACC D polydeoxyribonucleotide no no GSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRP TPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGP RLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGT KVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ GSEGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRP TPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGP RLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGT KVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli PLASMID PET30A-TRUNC.HOGG1 1 2.87 57.08 VAPOR DIFFUSION, HANGING DROP 6.5 100 mM sodium cacodylate pH 6.5, 200 mM calcium acetate, 16-18% PEG, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 sodium cacodylate 1 calcium acetate 1 PEG 1 PEG 2 14.707 C 1 D 30 -6.507 C_DG1:DC30_D 1 -25.156 0.143 -0.342 0.065 -8.740 1 19 C 2 D 29 -2.812 C_DG2:DC29_D 2 4.287 -1.107 0.019 -0.154 -21.211 1 20 C 3 D 28 -10.693 C_DT3:DA28_D 3 -11.621 -1.050 0.680 -0.007 -20.640 1 20 C 4 D 27 -1.427 C_DA4:DT27_D 4 -9.279 -1.197 -0.363 -0.288 -0.915 1 19 C 5 D 26 5.565 C_DG5:DC26_D 5 -10.093 -0.080 -0.225 -0.072 0.786 1 20 C 6 D 25 -0.084 C_DA6:DT25_D 6 -15.402 0.461 -0.338 -0.087 16.782 1 19 C 7 D 24 -2.105 C_DC7:DG24_D 7 8.010 0.144 -0.208 -0.250 -8.842 1 20 C 9 D 22 2.243 C_DT9:DA22_D 8 -10.962 -0.778 -0.092 -0.298 12.125 1 19 C 10 D 21 11.975 C_DG10:DC21_D 9 -7.938 0.407 0.303 0.129 13.570 1 C 11 D 20 6.432 C_DG11:DC20_D 10 -11.306 -0.519 0.710 0.331 2.387 1 20 C 12 D 19 -5.714 C_DA12:DT19_D 11 -14.546 -1.024 0.317 -0.722 0.888 1 19 C 13 D 18 -6.468 C_DC13:DG18_D 12 -16.039 -0.488 0.083 -0.111 -15.969 1 C 14 D 17 6.395 C_DG14:DC17_D 13 -29.482 1.404 0.058 0.456 3.731 35.753 C C 1 2 23.370 D D 30 29 4.057 13.947 1.239 0.457 CC_DG1DG2:DC29DC30_DD 1 -4.737 7.939 32.669 -1.767 -2.872 3.552 31.945 C C 2 3 11.908 D D 29 28 3.740 6.466 -1.158 -1.361 CC_DG2DT3:DA28DC29_DD 2 -6.525 12.017 30.629 -3.808 0.757 3.280 40.150 C C 3 4 3.246 D D 28 27 3.279 2.226 0.039 0.133 CC_DT3DA4:DT27DA28_DD 3 1.752 -2.554 40.054 -0.060 0.143 2.940 39.902 C C 4 5 1.198 D D 27 26 2.914 0.816 -0.295 0.611 CC_DA4DG5:DC26DT27_DD 4 -4.536 6.661 39.646 0.810 -0.037 3.216 33.866 C C 5 6 -6.236 D D 26 25 3.280 -3.626 -0.733 0.314 CC_DG5DA6:DT25DC26_DD 5 0.628 -1.080 33.671 1.121 1.358 2.745 28.240 C C 6 7 8.835 D D 25 24 2.859 4.291 0.717 -0.181 CC_DA6DC7:DG24DT25_DD 6 -1.965 4.045 27.850 -1.232 -1.865 2.929 32.682 C C 9 10 5.339 D D 22 21 2.864 3.000 0.662 1.113 CC_DT9DG10:DC21DA22_DD 7 -1.092 1.944 32.530 1.518 -1.344 3.362 36.614 C C 10 11 6.506 D D 21 20 3.241 4.065 -0.897 0.415 CC_DG10DG11:DC20DC21_DD 8 -5.454 8.730 35.997 0.091 0.665 3.503 33.549 C C 11 12 -6.851 D D 20 19 3.415 -3.945 -0.649 -1.164 CC_DG11DA12:DT19DC20_DD 9 1.122 -1.949 33.305 -1.330 1.319 3.231 37.226 C C 12 13 3.799 D D 19 18 3.229 2.419 0.455 -0.339 CC_DA12DC13:DG18DT19_DD 10 4.156 -6.527 36.925 -0.850 -0.165 3.929 48.545 C C 13 14 14.759 D D 18 17 3.826 11.992 0.515 0.754 CC_DC13DG14:DC17DG18_DD 11 6.255 -7.698 46.733 -0.203 -0.043 chem_comp_atom chem_comp_bond database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-04-21 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details 1EBM contains a catalytically inactive mutant bound to an oxoG-containing DNA NDB Y NDB 2000-08-21 REL REL CA CALCIUM ION HOH water CA 1001 4 CA CA 1001 D HOH 23 5 HOH HOH 23 C HOH 41 5 HOH HOH 41 C HOH 115 5 HOH HOH 115 C HOH 120 5 HOH HOH 120 C HOH 135 5 HOH HOH 135 C HOH 136 5 HOH HOH 136 C HOH 16 5 HOH HOH 1002 D HOH 89 5 HOH HOH 1003 D HOH 92 5 HOH HOH 1004 D HOH 100 5 HOH HOH 1005 D HOH 107 5 HOH HOH 1006 D HOH 113 5 HOH HOH 1007 D HOH 149 5 HOH HOH 1008 D HOH 1 5 HOH HOH 326 A HOH 2 5 HOH HOH 327 A HOH 4 5 HOH HOH 328 A HOH 5 5 HOH HOH 329 A HOH 6 5 HOH HOH 330 A HOH 9 5 HOH HOH 331 A HOH 10 5 HOH HOH 332 A HOH 11 5 HOH HOH 333 A HOH 12 5 HOH HOH 334 A HOH 13 5 HOH HOH 335 A HOH 14 5 HOH HOH 336 A HOH 15 5 HOH HOH 337 A HOH 17 5 HOH HOH 338 A HOH 18 5 HOH HOH 339 A HOH 19 5 HOH HOH 340 A HOH 21 5 HOH HOH 341 A HOH 22 5 HOH HOH 342 A HOH 24 5 HOH HOH 343 A HOH 25 5 HOH HOH 344 A HOH 26 5 HOH HOH 345 A HOH 27 5 HOH HOH 346 A HOH 28 5 HOH HOH 347 A HOH 29 5 HOH HOH 348 A HOH 30 5 HOH HOH 349 A HOH 31 5 HOH HOH 350 A HOH 32 5 HOH HOH 351 A HOH 33 5 HOH HOH 352 A HOH 36 5 HOH HOH 353 A HOH 37 5 HOH HOH 354 A HOH 39 5 HOH HOH 355 A HOH 40 5 HOH HOH 356 A HOH 42 5 HOH HOH 357 A HOH 43 5 HOH HOH 358 A HOH 44 5 HOH HOH 359 A HOH 45 5 HOH HOH 360 A HOH 46 5 HOH HOH 361 A HOH 47 5 HOH HOH 362 A HOH 48 5 HOH HOH 363 A HOH 49 5 HOH HOH 364 A HOH 50 5 HOH HOH 365 A HOH 53 5 HOH HOH 366 A HOH 54 5 HOH HOH 367 A HOH 55 5 HOH HOH 368 A HOH 56 5 HOH HOH 369 A HOH 57 5 HOH HOH 370 A HOH 58 5 HOH HOH 371 A HOH 59 5 HOH HOH 372 A HOH 60 5 HOH HOH 373 A HOH 64 5 HOH HOH 374 A HOH 65 5 HOH HOH 375 A HOH 66 5 HOH HOH 376 A HOH 68 5 HOH HOH 377 A HOH 69 5 HOH HOH 378 A HOH 70 5 HOH HOH 379 A HOH 71 5 HOH HOH 380 A HOH 72 5 HOH HOH 381 A HOH 73 5 HOH HOH 382 A HOH 74 5 HOH HOH 383 A HOH 75 5 HOH HOH 384 A HOH 76 5 HOH HOH 385 A HOH 77 5 HOH HOH 386 A HOH 78 5 HOH HOH 387 A HOH 79 5 HOH HOH 388 A HOH 80 5 HOH HOH 389 A HOH 81 5 HOH HOH 390 A HOH 83 5 HOH HOH 391 A HOH 84 5 HOH HOH 392 A HOH 85 5 HOH HOH 393 A HOH 86 5 HOH HOH 394 A HOH 87 5 HOH HOH 395 A HOH 88 5 HOH HOH 396 A HOH 90 5 HOH HOH 397 A HOH 91 5 HOH HOH 398 A HOH 93 5 HOH HOH 399 A HOH 94 5 HOH HOH 400 A HOH 95 5 HOH HOH 401 A HOH 96 5 HOH HOH 402 A HOH 97 5 HOH HOH 403 A HOH 98 5 HOH HOH 404 A HOH 101 5 HOH HOH 405 A HOH 102 5 HOH HOH 406 A HOH 103 5 HOH HOH 407 A HOH 104 5 HOH HOH 408 A HOH 105 5 HOH HOH 409 A HOH 109 5 HOH HOH 410 A HOH 110 5 HOH HOH 411 A HOH 111 5 HOH HOH 412 A HOH 112 5 HOH HOH 413 A HOH 114 5 HOH HOH 414 A HOH 116 5 HOH HOH 415 A HOH 117 5 HOH HOH 416 A HOH 118 5 HOH HOH 417 A HOH 119 5 HOH HOH 418 A HOH 121 5 HOH HOH 419 A HOH 122 5 HOH HOH 420 A HOH 123 5 HOH HOH 421 A HOH 124 5 HOH HOH 422 A HOH 125 5 HOH HOH 423 A HOH 126 5 HOH HOH 424 A HOH 127 5 HOH HOH 425 A HOH 128 5 HOH HOH 426 A HOH 129 5 HOH HOH 427 A HOH 130 5 HOH HOH 428 A HOH 131 5 HOH HOH 429 A HOH 132 5 HOH HOH 430 A HOH 133 5 HOH HOH 431 A HOH 137 5 HOH HOH 432 A HOH 138 5 HOH HOH 433 A HOH 139 5 HOH HOH 434 A HOH 140 5 HOH HOH 435 A HOH 141 5 HOH HOH 436 A HOH 142 5 HOH HOH 437 A HOH 143 5 HOH HOH 438 A HOH 144 5 HOH HOH 439 A HOH 145 5 HOH HOH 440 A HOH 146 5 HOH HOH 441 A HOH 148 5 HOH HOH 442 A HOH 150 5 HOH HOH 443 A HOH 151 5 HOH HOH 444 A G 1 n 1 DG 1 C G 2 n 2 DG 2 C T 3 n 3 DT 3 C A 4 n 4 DA 4 C G 5 n 5 DG 5 C A 6 n 6 DA 6 C C 7 n 7 DC 7 C C 8 n 8 DC 8 C T 9 n 9 DT 9 C G 10 n 10 DG 10 C G 11 n 11 DG 11 C A 12 n 12 DA 12 C C 13 n 13 DC 13 C G 14 n 14 DG 14 C C 15 n 15 DC 15 C G 16 n 1 DG 16 D C 17 n 2 DC 17 D G 18 n 3 DG 18 D T 19 n 4 DT 19 D C 20 n 5 DC 20 D C 21 n 6 DC 21 D A 22 n 7 DA 22 D 3DR 23 n 8 3DR 23 D G 24 n 9 DG 24 D T 25 n 10 DT 25 D C 26 n 11 DC 26 D T 27 n 12 DT 27 D A 28 n 13 DA 28 D C 29 n 14 DC 29 D C 30 n 15 DC 30 D GLY 9 n 1 GLY 9 A SER 10 n 2 SER 10 A GLU 11 n 3 GLU 11 A GLY 12 n 4 GLY 12 A HIS 13 n 5 HIS 13 A ARG 14 n 6 ARG 14 A THR 15 n 7 THR 15 A LEU 16 n 8 LEU 16 A ALA 17 n 9 ALA 17 A SER 18 n 10 SER 18 A THR 19 n 11 THR 19 A PRO 20 n 12 PRO 20 A ALA 21 n 13 ALA 21 A LEU 22 n 14 LEU 22 A TRP 23 n 15 TRP 23 A ALA 24 n 16 ALA 24 A SER 25 n 17 SER 25 A ILE 26 n 18 ILE 26 A PRO 27 n 19 PRO 27 A CYS 28 n 20 CYS 28 A PRO 29 n 21 PRO 29 A ARG 30 n 22 ARG 30 A SER 31 n 23 SER 31 A GLU 32 n 24 GLU 32 A LEU 33 n 25 LEU 33 A ARG 34 n 26 ARG 34 A LEU 35 n 27 LEU 35 A ASP 36 n 28 ASP 36 A LEU 37 n 29 LEU 37 A VAL 38 n 30 VAL 38 A LEU 39 n 31 LEU 39 A PRO 40 n 32 PRO 40 A SER 41 n 33 SER 41 A GLY 42 n 34 GLY 42 A GLN 43 n 35 GLN 43 A SER 44 n 36 SER 44 A PHE 45 n 37 PHE 45 A ARG 46 n 38 ARG 46 A TRP 47 n 39 TRP 47 A ARG 48 n 40 ARG 48 A GLU 49 n 41 GLU 49 A GLN 50 n 42 GLN 50 A SER 51 n 43 SER 51 A PRO 52 n 44 PRO 52 A ALA 53 n 45 ALA 53 A HIS 54 n 46 HIS 54 A TRP 55 n 47 TRP 55 A SER 56 n 48 SER 56 A GLY 57 n 49 GLY 57 A VAL 58 n 50 VAL 58 A LEU 59 n 51 LEU 59 A ALA 60 n 52 ALA 60 A ASP 61 n 53 ASP 61 A GLN 62 n 54 GLN 62 A VAL 63 n 55 VAL 63 A TRP 64 n 56 TRP 64 A THR 65 n 57 THR 65 A LEU 66 n 58 LEU 66 A THR 67 n 59 THR 67 A GLN 68 n 60 GLN 68 A THR 69 n 61 THR 69 A GLU 70 n 62 GLU 70 A GLU 71 n 63 GLU 71 A GLN 72 n 64 GLN 72 A LEU 73 n 65 LEU 73 A HIS 74 n 66 HIS 74 A CYS 75 n 67 CYS 75 A THR 76 n 68 THR 76 A VAL 77 n 69 VAL 77 A TYR 78 n 70 TYR 78 A ARG 79 n 71 ARG 79 A n 72 80 A n 73 81 A n 74 82 A SER 83 n 75 SER 83 A GLN 84 n 76 GLN 84 A ALA 85 n 77 ALA 85 A SER 86 n 78 SER 86 A ARG 87 n 79 ARG 87 A PRO 88 n 80 PRO 88 A THR 89 n 81 THR 89 A PRO 90 n 82 PRO 90 A ASP 91 n 83 ASP 91 A GLU 92 n 84 GLU 92 A LEU 93 n 85 LEU 93 A GLU 94 n 86 GLU 94 A ALA 95 n 87 ALA 95 A VAL 96 n 88 VAL 96 A ARG 97 n 89 ARG 97 A LYS 98 n 90 LYS 98 A TYR 99 n 91 TYR 99 A PHE 100 n 92 PHE 100 A GLN 101 n 93 GLN 101 A LEU 102 n 94 LEU 102 A ASP 103 n 95 ASP 103 A VAL 104 n 96 VAL 104 A THR 105 n 97 THR 105 A LEU 106 n 98 LEU 106 A ALA 107 n 99 ALA 107 A GLN 108 n 100 GLN 108 A LEU 109 n 101 LEU 109 A TYR 110 n 102 TYR 110 A HIS 111 n 103 HIS 111 A HIS 112 n 104 HIS 112 A TRP 113 n 105 TRP 113 A GLY 114 n 106 GLY 114 A SER 115 n 107 SER 115 A VAL 116 n 108 VAL 116 A ASP 117 n 109 ASP 117 A SER 118 n 110 SER 118 A HIS 119 n 111 HIS 119 A PHE 120 n 112 PHE 120 A GLN 121 n 113 GLN 121 A GLU 122 n 114 GLU 122 A VAL 123 n 115 VAL 123 A ALA 124 n 116 ALA 124 A GLN 125 n 117 GLN 125 A LYS 126 n 118 LYS 126 A PHE 127 n 119 PHE 127 A GLN 128 n 120 GLN 128 A GLY 129 n 121 GLY 129 A VAL 130 n 122 VAL 130 A ARG 131 n 123 ARG 131 A LEU 132 n 124 LEU 132 A LEU 133 n 125 LEU 133 A ARG 134 n 126 ARG 134 A GLN 135 n 127 GLN 135 A ASP 136 n 128 ASP 136 A PRO 137 n 129 PRO 137 A ILE 138 n 130 ILE 138 A GLU 139 n 131 GLU 139 A CYS 140 n 132 CYS 140 A LEU 141 n 133 LEU 141 A PHE 142 n 134 PHE 142 A SER 143 n 135 SER 143 A PHE 144 n 136 PHE 144 A ILE 145 n 137 ILE 145 A CYS 146 n 138 CYS 146 A SER 147 n 139 SER 147 A SER 148 n 140 SER 148 A ASN 149 n 141 ASN 149 A ASN 150 n 142 ASN 150 A ASN 151 n 143 ASN 151 A ILE 152 n 144 ILE 152 A ALA 153 n 145 ALA 153 A ARG 154 n 146 ARG 154 A ILE 155 n 147 ILE 155 A THR 156 n 148 THR 156 A GLY 157 n 149 GLY 157 A MET 158 n 150 MET 158 A VAL 159 n 151 VAL 159 A GLU 160 n 152 GLU 160 A ARG 161 n 153 ARG 161 A LEU 162 n 154 LEU 162 A CYS 163 n 155 CYS 163 A GLN 164 n 156 GLN 164 A ALA 165 n 157 ALA 165 A PHE 166 n 158 PHE 166 A GLY 167 n 159 GLY 167 A PRO 168 n 160 PRO 168 A ARG 169 n 161 ARG 169 A LEU 170 n 162 LEU 170 A ILE 171 n 163 ILE 171 A GLN 172 n 164 GLN 172 A LEU 173 n 165 LEU 173 A ASP 174 n 166 ASP 174 A ASP 175 n 167 ASP 175 A VAL 176 n 168 VAL 176 A THR 177 n 169 THR 177 A TYR 178 n 170 TYR 178 A HIS 179 n 171 HIS 179 A GLY 180 n 172 GLY 180 A PHE 181 n 173 PHE 181 A PRO 182 n 174 PRO 182 A SER 183 n 175 SER 183 A LEU 184 n 176 LEU 184 A GLN 185 n 177 GLN 185 A ALA 186 n 178 ALA 186 A LEU 187 n 179 LEU 187 A ALA 188 n 180 ALA 188 A GLY 189 n 181 GLY 189 A PRO 190 n 182 PRO 190 A GLU 191 n 183 GLU 191 A VAL 192 n 184 VAL 192 A GLU 193 n 185 GLU 193 A ALA 194 n 186 ALA 194 A HIS 195 n 187 HIS 195 A LEU 196 n 188 LEU 196 A ARG 197 n 189 ARG 197 A LYS 198 n 190 LYS 198 A LEU 199 n 191 LEU 199 A GLY 200 n 192 GLY 200 A LEU 201 n 193 LEU 201 A GLY 202 n 194 GLY 202 A TYR 203 n 195 TYR 203 A ARG 204 n 196 ARG 204 A ALA 205 n 197 ALA 205 A ARG 206 n 198 ARG 206 A TYR 207 n 199 TYR 207 A VAL 208 n 200 VAL 208 A SER 209 n 201 SER 209 A ALA 210 n 202 ALA 210 A SER 211 n 203 SER 211 A ALA 212 n 204 ALA 212 A ARG 213 n 205 ARG 213 A ALA 214 n 206 ALA 214 A ILE 215 n 207 ILE 215 A LEU 216 n 208 LEU 216 A GLU 217 n 209 GLU 217 A GLU 218 n 210 GLU 218 A GLN 219 n 211 GLN 219 A GLY 220 n 212 GLY 220 A GLY 221 n 213 GLY 221 A LEU 222 n 214 LEU 222 A ALA 223 n 215 ALA 223 A TRP 224 n 216 TRP 224 A LEU 225 n 217 LEU 225 A GLN 226 n 218 GLN 226 A GLN 227 n 219 GLN 227 A LEU 228 n 220 LEU 228 A ARG 229 n 221 ARG 229 A GLU 230 n 222 GLU 230 A SER 231 n 223 SER 231 A SER 232 n 224 SER 232 A TYR 233 n 225 TYR 233 A GLU 234 n 226 GLU 234 A GLU 235 n 227 GLU 235 A ALA 236 n 228 ALA 236 A HIS 237 n 229 HIS 237 A LYS 238 n 230 LYS 238 A ALA 239 n 231 ALA 239 A LEU 240 n 232 LEU 240 A CYS 241 n 233 CYS 241 A ILE 242 n 234 ILE 242 A LEU 243 n 235 LEU 243 A PRO 244 n 236 PRO 244 A GLY 245 n 237 GLY 245 A VAL 246 n 238 VAL 246 A GLY 247 n 239 GLY 247 A THR 248 n 240 THR 248 A LYS 249 n 241 LYS 249 A VAL 250 n 242 VAL 250 A ALA 251 n 243 ALA 251 A ASP 252 n 244 ASP 252 A CYS 253 n 245 CYS 253 A ILE 254 n 246 ILE 254 A CYS 255 n 247 CYS 255 A LEU 256 n 248 LEU 256 A MET 257 n 249 MET 257 A ALA 258 n 250 ALA 258 A LEU 259 n 251 LEU 259 A ASP 260 n 252 ASP 260 A LYS 261 n 253 LYS 261 A PRO 262 n 254 PRO 262 A GLN 263 n 255 GLN 263 A ALA 264 n 256 ALA 264 A VAL 265 n 257 VAL 265 A PRO 266 n 258 PRO 266 A VAL 267 n 259 VAL 267 A ASP 268 n 260 ASP 268 A VAL 269 n 261 VAL 269 A HIS 270 n 262 HIS 270 A MET 271 n 263 MET 271 A TRP 272 n 264 TRP 272 A HIS 273 n 265 HIS 273 A ILE 274 n 266 ILE 274 A ALA 275 n 267 ALA 275 A GLN 276 n 268 GLN 276 A ARG 277 n 269 ARG 277 A ASP 278 n 270 ASP 278 A TYR 279 n 271 TYR 279 A SER 280 n 272 SER 280 A TRP 281 n 273 TRP 281 A HIS 282 n 274 HIS 282 A PRO 283 n 275 PRO 283 A THR 284 n 276 THR 284 A THR 285 n 277 THR 285 A SER 286 n 278 SER 286 A GLN 287 n 279 GLN 287 A ALA 288 n 280 ALA 288 A LYS 289 n 281 LYS 289 A GLY 290 n 282 GLY 290 A PRO 291 n 283 PRO 291 A SER 292 n 284 SER 292 A PRO 293 n 285 PRO 293 A GLN 294 n 286 GLN 294 A THR 295 n 287 THR 295 A ASN 296 n 288 ASN 296 A LYS 297 n 289 LYS 297 A GLU 298 n 290 GLU 298 A LEU 299 n 291 LEU 299 A GLY 300 n 292 GLY 300 A ASN 301 n 293 ASN 301 A PHE 302 n 294 PHE 302 A PHE 303 n 295 PHE 303 A ARG 304 n 296 ARG 304 A SER 305 n 297 SER 305 A LEU 306 n 298 LEU 306 A TRP 307 n 299 TRP 307 A GLY 308 n 300 GLY 308 A PRO 309 n 301 PRO 309 A TYR 310 n 302 TYR 310 A ALA 311 n 303 ALA 311 A GLY 312 n 304 GLY 312 A TRP 313 n 305 TRP 313 A ALA 314 n 306 ALA 314 A GLN 315 n 307 GLN 315 A ALA 316 n 308 ALA 316 A VAL 317 n 309 VAL 317 A LEU 318 n 310 LEU 318 A PHE 319 n 311 PHE 319 A SER 320 n 312 SER 320 A ALA 321 n 313 ALA 321 A ASP 322 n 314 ASP 322 A LEU 323 n 315 LEU 323 A ARG 324 n 316 ARG 324 A GLN 325 n 317 GLN 325 A author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 26 C O ILE 18 A N LEU 73 C N LEU 65 A N TYR 78 C N TYR 70 A O VAL 63 C O VAL 55 A O LEU 66 C O LEU 58 A N TRP 55 C N TRP 47 A N SER 56 C N SER 48 A O ARG 48 C O ARG 40 A N LEU 173 C N LEU 165 A O VAL 176 C O VAL 168 1 A CG GLU 71 C CG GLU 63 1 Y 1 A CD GLU 71 C CD GLU 63 1 Y 1 A OE1 GLU 71 C OE1 GLU 63 1 Y 1 A OE2 GLU 71 C OE2 GLU 63 1 Y 1 A CG GLN 84 C CG GLN 76 1 Y 1 A CD GLN 84 C CD GLN 76 1 Y 1 A OE1 GLN 84 C OE1 GLN 76 1 Y 1 A NE2 GLN 84 C NE2 GLN 76 1 Y 1 A CG ARG 87 C CG ARG 79 1 Y 1 A CD ARG 87 C CD ARG 79 1 Y 1 A NE ARG 87 C NE ARG 79 1 Y 1 A CZ ARG 87 C CZ ARG 79 1 Y 1 A NH1 ARG 87 C NH1 ARG 79 1 Y 1 A NH2 ARG 87 C NH2 ARG 79 1 Y 1 A CG GLU 122 C CG GLU 114 1 Y 1 A CD GLU 122 C CD GLU 114 1 Y 1 A OE1 GLU 122 C OE1 GLU 114 1 Y 1 A OE2 GLU 122 C OE2 GLU 114 1 Y 1 A CG GLN 125 C CG GLN 117 1 Y 1 A CD GLN 125 C CD GLN 117 1 Y 1 A OE1 GLN 125 C OE1 GLN 117 1 Y 1 A NE2 GLN 125 C NE2 GLN 117 1 Y 1 A CG GLN 128 C CG GLN 120 1 Y 1 A CD GLN 128 C CD GLN 120 1 Y 1 A OE1 GLN 128 C OE1 GLN 120 1 Y 1 A NE2 GLN 128 C NE2 GLN 120 1 Y 1 A CG ARG 134 C CG ARG 126 1 Y 1 A CD ARG 134 C CD ARG 126 1 Y 1 A NE ARG 134 C NE ARG 126 1 Y 1 A CZ ARG 134 C CZ ARG 126 1 Y 1 A NH1 ARG 134 C NH1 ARG 126 1 Y 1 A NH2 ARG 134 C NH2 ARG 126 1 Y 1 A CG GLN 164 C CG GLN 156 1 Y 1 A CD GLN 164 C CD GLN 156 1 Y 1 A OE1 GLN 164 C OE1 GLN 156 1 Y 1 A NE2 GLN 164 C NE2 GLN 156 1 Y 1 A CG GLN 227 C CG GLN 219 1 Y 1 A CD GLN 227 C CD GLN 219 1 Y 1 A OE1 GLN 227 C OE1 GLN 219 1 Y 1 A NE2 GLN 227 C NE2 GLN 219 1 Y 1 A OG SER 286 C OG SER 278 1 Y 1 A CG LYS 289 C CG LYS 281 1 Y 1 A CD LYS 289 C CD LYS 281 1 Y 1 A CE LYS 289 C CE LYS 281 1 Y 1 A NZ LYS 289 C NZ LYS 281 1 Y 1 A CG GLN 294 C CG GLN 286 1 Y 1 A CD GLN 294 C CD GLN 286 1 Y 1 A OE1 GLN 294 C OE1 GLN 286 1 Y 1 A NE2 GLN 294 C NE2 GLN 286 1 Y 1 A CG GLN 325 C CG GLN 317 1 Y 1 A CD GLN 325 C CD GLN 317 1 Y 1 A OE1 GLN 325 C OE1 GLN 317 1 Y 1 A NE2 GLN 325 C NE2 GLN 317 1 Y 1 A GLY 80 C GLY 72 1 Y 1 A ASP 81 C ASP 73 1 Y 1 A LYS 82 C LYS 74 1 Y 1 A A OE1 N GLU LEU 32 106 2.19 1 A A O O CYS HOH 241 425 2.19 1 A A O O HOH HOH 410 410 1.78 1_555 10_665 1 A CYS 28 -173.87 112.14 1 A GLU 122 -64.24 -72.57 1 A LEU 170 -102.69 -90.68 1 A ASP 174 53.53 -127.27 1 A GLN 287 -104.06 -78.14 1 A PRO 309 -39.85 -37.08 PROTEIN_REP.PA PROTEIN.TOP DNA-RNA_REP.PA DNA-RNA.TOP WATER_REP.PARA WATER.TOP ION.PARAM ION.TOP 40.6 4.05 6.93 0.00 4.05 0.00 -8.10 conformation of the abasic deoxyribose ring was determined by modeling it as RNA (C3'-endo) and DNA (C2'-endo), and performing simulated annealing on both models. When modeled in the C2'-endo conformation, R and Rfree were lower, and the model fit the experimental Fo-Fc omit density better 0.270 0.007 0.221 0.221 2.60 29.85 1505 17058 14841 10.1 87.0 RANDOM 294195.16 0.00 1 RESTRAINED THROUGHOUT 2.0 1.0 FLAT MODEL 39.06 0.339 0.42 0.32 5.00 0.46 0.32 2.60 29.85 132 3171 1 598 2440 0.006 1.3 20.7 0.90 1.15 1.50 1.98 2.00 1.46 2.00 2.30 2.50 0.361 0.027 0.264 2.76 175 1752 6 9.1 69.9 35.4 2.6 30.0 1FN7 18214 17653 2.0 1.0 0.073 1 14.3 4.74 96.6 0.352 2.54 2.69 1757 3.15 99.8 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS COUPLING OF DAMAGE RECOGNITION AND CATALYSIS BY A HUMAN BASE-EXCISION DNA REPAIR PROTEIN 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N A THR 19 C THR 11 HELX_P A TRP 23 C TRP 15 5 1 5 A ARG 34 C ARG 26 HELX_P A LEU 39 C LEU 31 1 2 6 A THR 89 C THR 81 HELX_P A PHE 100 C PHE 92 1 3 12 A THR 105 C THR 97 HELX_P A ASP 117 C ASP 109 1 4 13 A ASP 117 C ASP 109 HELX_P A GLN 125 C GLN 117 1 5 9 A LYS 126 C LYS 118 HELX_P A GLN 128 C GLN 120 5 6 3 A ASP 136 C ASP 128 HELX_P A CYS 146 C CYS 138 1 7 11 A ASN 151 C ASN 143 HELX_P A GLY 167 C GLY 159 1 8 17 A SER 183 C SER 175 HELX_P A GLY 189 C GLY 181 1 9 7 A GLU 191 C GLU 183 HELX_P A LYS 198 C LYS 190 1 10 8 A LEU 199 C LEU 191 HELX_P A GLY 200 C GLY 192 5 11 2 A LEU 201 C LEU 193 HELX_P A GLY 202 C GLY 194 5 12 2 A TYR 203 C TYR 195 HELX_P A GLN 219 C GLN 211 1 13 17 A GLY 221 C GLY 213 HELX_P A ARG 229 C ARG 221 1 14 9 A SER 232 C SER 224 HELX_P A CYS 241 C CYS 233 1 15 10 A GLY 247 C GLY 239 HELX_P A LEU 259 C LEU 251 1 16 13 A ASP 268 C ASP 260 HELX_P A SER 280 C SER 272 1 17 13 A SER 292 C SER 284 HELX_P A GLY 308 C GLY 300 1 18 17 A TYR 310 C TYR 302 HELX_P A ARG 324 C ARG 316 1 19 15 covale 1.606 both D DA 22 B O3' DA 7 1_555 D 3DR 23 B P 3DR 8 1_555 covale 1.607 both D 3DR 23 B O3' 3DR 8 1_555 D DG 24 B P DG 9 1_555 hydrog DG-DC PAIR C DG 1 A N1 DG 1 1_555 D DC 30 B N3 DC 15 1_555 hydrog WATSON-CRICK C DG 2 A N1 DG 2 1_555 D DC 29 B N3 DC 14 1_555 hydrog WATSON-CRICK C DG 2 A N2 DG 2 1_555 D DC 29 B O2 DC 14 1_555 hydrog WATSON-CRICK C DG 2 A O6 DG 2 1_555 D DC 29 B N4 DC 14 1_555 hydrog WATSON-CRICK C DT 3 A N3 DT 3 1_555 D DA 28 B N1 DA 13 1_555 hydrog WATSON-CRICK C DT 3 A O4 DT 3 1_555 D DA 28 B N6 DA 13 1_555 hydrog WATSON-CRICK C DA 4 A N1 DA 4 1_555 D DT 27 B N3 DT 12 1_555 hydrog WATSON-CRICK C DA 4 A N6 DA 4 1_555 D DT 27 B O4 DT 12 1_555 hydrog WATSON-CRICK C DG 5 A N1 DG 5 1_555 D DC 26 B N3 DC 11 1_555 hydrog WATSON-CRICK C DG 5 A N2 DG 5 1_555 D DC 26 B O2 DC 11 1_555 hydrog WATSON-CRICK C DG 5 A O6 DG 5 1_555 D DC 26 B N4 DC 11 1_555 hydrog WATSON-CRICK C DA 6 A N1 DA 6 1_555 D DT 25 B N3 DT 10 1_555 hydrog WATSON-CRICK C DA 6 A N6 DA 6 1_555 D DT 25 B O4 DT 10 1_555 hydrog WATSON-CRICK C DC 7 A N3 DC 7 1_555 D DG 24 B N1 DG 9 1_555 hydrog WATSON-CRICK C DC 7 A N4 DC 7 1_555 D DG 24 B O6 DG 9 1_555 hydrog WATSON-CRICK C DC 7 A O2 DC 7 1_555 D DG 24 B N2 DG 9 1_555 hydrog WATSON-CRICK C DT 9 A N3 DT 9 1_555 D DA 22 B N1 DA 7 1_555 hydrog WATSON-CRICK C DT 9 A O4 DT 9 1_555 D DA 22 B N6 DA 7 1_555 hydrog WATSON-CRICK C DG 10 A N1 DG 10 1_555 D DC 21 B N3 DC 6 1_555 hydrog WATSON-CRICK C DG 10 A N2 DG 10 1_555 D DC 21 B O2 DC 6 1_555 hydrog WATSON-CRICK C DG 10 A O6 DG 10 1_555 D DC 21 B N4 DC 6 1_555 hydrog DG-DC PAIR C DG 11 A N1 DG 11 1_555 D DC 20 B N3 DC 5 1_555 hydrog WATSON-CRICK C DA 12 A N1 DA 12 1_555 D DT 19 B N3 DT 4 1_555 hydrog WATSON-CRICK C DA 12 A N6 DA 12 1_555 D DT 19 B O4 DT 4 1_555 hydrog WATSON-CRICK C DC 13 A N3 DC 13 1_555 D DG 18 B N1 DG 3 1_555 hydrog WATSON-CRICK C DC 13 A N4 DC 13 1_555 D DG 18 B O6 DG 3 1_555 hydrog WATSON-CRICK C DC 13 A O2 DC 13 1_555 D DG 18 B N2 DG 3 1_555 hydrog DG-DC PAIR C DG 14 A N2 DG 14 1_555 D DC 17 B O2 DC 2 1_555 HYDROLASE/DNA DNA REPAIR, DNA GLYCOSYLASE, PROTEIN/DNA, Helix hairpin helix, base recognition, oxoguanine, hydroxyguanine, base flipping, flipped-out base, extrahelical DNA, mechanism-based inhibitor, base-exicision repair, AP lyase, DNA glycosidase, HYDROLASE-DNA COMPLEX OGG1_HUMAN UNP 3 12 O15527 1FN7 PDB 1 1FN7 1FN7 PDB 2 1FN7 12 325 1FN7 9 325 O15527 A 1 1 317 1 15 1FN7 1 15 1FN7 C 2 1 15 16 30 1FN7 16 30 1FN7 D 3 1 15 1 ARG conflict GLY 9 1FN7 A O15527 UNP 9 1 1 ARG conflict SER 10 1FN7 A O15527 UNP 10 2 1 MET conflict GLU 11 1FN7 A O15527 UNP 11 3 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 24 C ALA 16 A PRO 27 C PRO 19 A GLN 72 C GLN 64 A TYR 78 C TYR 70 A GLN 62 C GLN 54 A GLN 68 C GLN 60 A HIS 54 C HIS 46 A LEU 59 C LEU 51 A ARG 48 C ARG 40 A SER 51 C SER 43 A ARG 169 C ARG 161 A LEU 173 C LEU 165 A VAL 176 C VAL 168 A HIS 179 C HIS 171 179 hexagonal P 65 2 2