1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Hinck, A.P.
Markus, M.A.
Huang, S.
Grzesiek, S.
Kustanovich, I.
Draper, D.E.
Torchia, D.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
274
101
113
10.1006/jmbi.1997.1379
9398519
The RNA binding domain of ribosomal protein L11: three-dimensional structure of the RNA-bound form of the protein and its interaction with 23 S rRNA.
1997
10.2210/pdb1foy/pdb
pdb_00001foy
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
STRUCTURE OF THE PROTEIN IN THIS ENTRY WAS DETERMINED AS A 1\:1 COMPLEX WITH ITS TARGET RNA OF 58 NUCLEOTIDES, BASES 1051 - 1108 OF THE E. COLI SEQUENCE
8152.554
RIBOSOMAL PROTEIN L11
C-TERMINAL DOMAIN, 75 RESIDUES
F1M
1
man
polymer
no
no
MTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVED
MTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVED
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Geobacillus
Escherichia
Escherichia coli
sample
BL21
1422
Geobacillus stearothermophilus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
PET11A
PLASMID
BL21
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-11-26
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1997-05-26
REL
50
1
6.1
320
K
SUBSTRUCTURE DISTANCE GEOMETRY/ SIMULATED ANNEALING PROTOCOL
SUBSTRUCTURE DISTANCE GEOMETRY/SIMULATING ANNEALING
BRUNGER
refinement
X-PLOR
3.8
structure solution
X-PLOR
3.8
500
Bruker
DMX-500
600
Bruker
DMX-600
MET
1
n
1
MET
1
A
THR
2
n
2
THR
2
A
PHE
3
n
3
PHE
3
A
ILE
4
n
4
ILE
4
A
THR
5
n
5
THR
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
PRO
8
n
8
PRO
8
A
PRO
9
n
9
PRO
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
VAL
12
n
12
VAL
12
A
LEU
13
n
13
LEU
13
A
LEU
14
n
14
LEU
14
A
LYS
15
n
15
LYS
15
A
LYS
16
n
16
LYS
16
A
ALA
17
n
17
ALA
17
A
ALA
18
n
18
ALA
18
A
GLY
19
n
19
GLY
19
A
ILE
20
n
20
ILE
20
A
GLU
21
n
21
GLU
21
A
SER
22
n
22
SER
22
A
GLY
23
n
23
GLY
23
A
SER
24
n
24
SER
24
A
GLY
25
n
25
GLY
25
A
GLU
26
n
26
GLU
26
A
PRO
27
n
27
PRO
27
A
ASN
28
n
28
ASN
28
A
ARG
29
n
29
ARG
29
A
ASN
30
n
30
ASN
30
A
LYS
31
n
31
LYS
31
A
VAL
32
n
32
VAL
32
A
ALA
33
n
33
ALA
33
A
THR
34
n
34
THR
34
A
ILE
35
n
35
ILE
35
A
LYS
36
n
36
LYS
36
A
ARG
37
n
37
ARG
37
A
ASP
38
n
38
ASP
38
A
LYS
39
n
39
LYS
39
A
VAL
40
n
40
VAL
40
A
ARG
41
n
41
ARG
41
A
GLU
42
n
42
GLU
42
A
ILE
43
n
43
ILE
43
A
ALA
44
n
44
ALA
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
LYS
47
n
47
LYS
47
A
MET
48
n
48
MET
48
A
PRO
49
n
49
PRO
49
A
ASP
50
n
50
ASP
50
A
LEU
51
n
51
LEU
51
A
ASN
52
n
52
ASN
52
A
ALA
53
n
53
ALA
53
A
ALA
54
n
54
ALA
54
A
SER
55
n
55
SER
55
A
ILE
56
n
56
ILE
56
A
GLU
57
n
57
GLU
57
A
ALA
58
n
58
ALA
58
A
ALA
59
n
59
ALA
59
A
MET
60
n
60
MET
60
A
ARG
61
n
61
ARG
61
A
MET
62
n
62
MET
62
A
ILE
63
n
63
ILE
63
A
GLU
64
n
64
GLU
64
A
GLY
65
n
65
GLY
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
ARG
68
n
68
ARG
68
A
SER
69
n
69
SER
69
A
MET
70
n
70
MET
70
A
GLY
71
n
71
GLY
71
A
ILE
72
n
72
ILE
72
A
VAL
73
n
73
VAL
73
A
VAL
74
n
74
VAL
74
A
GLU
75
n
75
GLU
75
A
ASP
76
n
76
ASP
76
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
33
A
O
ALA
33
A
N
VAL
73
A
N
VAL
73
1
A
A
O
H
LEU
GLY
14
19
1.58
1
A
A
O
H
ALA
LEU
10
14
1.58
1
A
A
O
H
MET
GLU
60
64
1.59
1
A
A
O
H
ALA
LYS
11
15
1.60
1
A
ARG
29
0.193
SIDE CHAIN
1
A
ARG
37
0.242
SIDE CHAIN
1
A
ARG
41
0.292
SIDE CHAIN
1
A
ARG
61
0.316
SIDE CHAIN
1
A
ARG
68
0.284
SIDE CHAIN
1
A
ILE
4
46.63
28.71
1
A
ALA
11
-43.20
-70.46
1
A
LYS
16
-73.02
-74.66
1
A
ILE
20
43.78
-169.83
1
A
SER
22
163.53
52.64
1
A
SER
24
-91.26
-78.51
1
A
PRO
27
-76.33
-162.06
1
A
ASN
28
-163.14
-58.15
1
A
ASN
30
76.34
167.65
1
A
LYS
31
76.94
94.51
1
A
ASP
50
160.95
-24.40
1
A
ALA
53
-43.90
161.49
1
A
SER
55
163.79
163.67
1
A
ILE
56
-43.75
-73.79
1
A
MET
70
-120.93
-77.55
model building
X-PLOR
3.8
refinement
X-PLOR
3.8
phasing
X-PLOR
3.8
THE RNA BINDING DOMAIN OF RIBOSOMAL PROTEIN L11: THREE-DIMENSIONAL STRUCTURE OF THE RNA-BOUND FORM OF THE PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE
1
Y
N
A
ALA
10
A
ALA
10
HELX_P
A
ALA
17
A
ALA
17
1
1
8
A
ARG
37
A
ARG
37
HELX_P
A
LEU
46
A
LEU
46
1
2
10
A
ILE
56
A
ILE
56
HELX_P
A
ALA
67
A
ALA
67
1
3
12
RIBOSOME
RIBOSOME, PROTEIN/RNA, THIOSTREPTON
RL11_BACST
UNP
1
1
P56210
MKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITVFEDRSFTFITKTPPAAVLLKKAAGIESG
SGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVED
59
133
1FOY
2
76
P56210
A
1
2
76
2
parallel
A
ALA
33
A
ALA
33
A
LYS
36
A
LYS
36
A
ILE
72
A
ILE
72
A
GLU
75
A
GLU
75
1
P 1