0.007705
0.004449
0.000000
0.000000
0.008897
0.000000
0.000000
0.000000
0.006953
0.00000
0.00000
0.00000
CIS PROLINE - PRO L 8
CIS PROLINE - PRO L 95
CIS PROLINE - PRO L 141
ARG H 40 - PRO H 41 OMEGA = 247.33 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION
CIS PROLINE - PRO H 149
CIS PROLINE - PRO H 151
Wien, M.W.
Hogle, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
129.785
129.785
143.829
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
2
232
243
10.1038/nsb0395-232
7539711
Structure of the complex between the Fab fragment of a neutralizing antibody for type 1 poliovirus and its viral epitope.
1995
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
1940.200
FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS
1
man
polymer
24080.750
IGG2A-KAPPA C3 FAB (LIGHT CHAIN)
1
man
polymer
23478.137
IGG2A-KAPPA C3 FAB (HEAVY CHAIN)
1
man
polymer
18.015
water
39
nat
water
no
no
CVTIMTVDNPASTTNKDK
CVTIMTVDNPASTTNKDK
P
polypeptide(L)
no
no
DVVMTQTPLSLPVSLGDQASISCSSSQSLVHSNGKTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTYFTLKI
SRVEAEDLGVYFCSQSTHVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSEV
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
DVVMTQTPLSLPVSLGDQASISCSSSQSLVHSNGKTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTYFTLKI
SRVEAEDLGVYFCSQSTHVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSEV
QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
L
polypeptide(L)
no
no
QVQLQQSGAELVRPGTSVKVSCKASGYAFTNYLIQWIKQRPGQGLEWIGVINPGSGGTDYNANFKGKATLTADKSSSIVY
MQLSSLTSDDSAVYFCARDFYDYDVGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
QVQLQQSGAELVRPGTSVKVSCKASGYAFTNYLIQWIKQRPGQGLEWIGVINPGSGGTDYNANFKGKATLTADKSSSIVY
MQLSSLTSDDSAVYFCARDFYDYDVGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT
WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR
H
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Enterovirus
Poliovirus
Mahoney
sample
12081
Human poliovirus 1
house mouse
Mus
sample
10090
Mus musculus
house mouse
Mus
sample
10090
Mus musculus
3.53
65.16
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
1
0
1995-03-31
1
1
2008-03-24
1
2
2011-07-13
Y
1995-01-26
REL
HOH
water
THE FAB FRAGMENT IS NUMBERED ACCORDING TO THE CONVENTION OF
E. KABAT (E.A. KABAT, T.T. WU, M. REID-MILLER, H.M. PERRY,
K.S. GOTTESMAN, SEQUENCES OF PROTEINS OF IMMUNOLOGICAL
INTEREST, 4TH ED., (1987), NATIONAL INSTITUTE OF HEALTH,
BETHESDA, MD.
THE PEPTIDE IS NUMBERED ACCORDING TO THE POLIOVIRUS TYPE 1
SEQUENCE (MAHONEY STRAIN) (V.R. RANCANIELLO AND D.
BALTIMORE (1981) PROCEEDINGS OF THE NATIONAL ACADEMY
OF SCIENCES, USA V. 78, 4887-4891). THE PEPTIDE USED WAS A
SYNTHETIC HOMOLOGUE OF RESIDUES 86 - 103 OF PV-1 VP1
(MAHONEY STRAIN). PV-1 VP1 RESIDUES ARE
(CVTIMYVDNPASTTNKDK). DUE TO DISORDER, RESIDUES 86 - 92
ARE NOT PRESENTED IN THE RECORDS BELOW.
HOH
23
4
HOH
HOH
23
P
HOH
28
4
HOH
HOH
28
P
HOH
6
4
HOH
HOH
214
L
HOH
7
4
HOH
HOH
215
L
HOH
9
4
HOH
HOH
216
L
HOH
12
4
HOH
HOH
217
L
HOH
14
4
HOH
HOH
218
L
HOH
15
4
HOH
HOH
219
L
HOH
16
4
HOH
HOH
220
L
HOH
18
4
HOH
HOH
221
L
HOH
20
4
HOH
HOH
222
L
HOH
22
4
HOH
HOH
223
L
HOH
24
4
HOH
HOH
224
L
HOH
25
4
HOH
HOH
225
L
HOH
26
4
HOH
HOH
226
L
HOH
29
4
HOH
HOH
227
L
HOH
30
4
HOH
HOH
228
L
HOH
31
4
HOH
HOH
229
L
HOH
39
4
HOH
HOH
230
L
HOH
1
4
HOH
HOH
229
H
HOH
2
4
HOH
HOH
230
H
HOH
3
4
HOH
HOH
231
H
HOH
4
4
HOH
HOH
232
H
HOH
5
4
HOH
HOH
233
H
HOH
8
4
HOH
HOH
234
H
HOH
10
4
HOH
HOH
235
H
HOH
11
4
HOH
HOH
236
H
HOH
13
4
HOH
HOH
237
H
HOH
17
4
HOH
HOH
238
H
HOH
19
4
HOH
HOH
239
H
HOH
21
4
HOH
HOH
240
H
HOH
27
4
HOH
HOH
241
H
HOH
32
4
HOH
HOH
242
H
HOH
33
4
HOH
HOH
243
H
HOH
34
4
HOH
HOH
244
H
HOH
35
4
HOH
HOH
245
H
HOH
36
4
HOH
HOH
246
H
HOH
37
4
HOH
HOH
247
H
HOH
38
4
HOH
HOH
248
H
n
1
86
P
n
2
87
P
n
3
88
P
n
4
89
P
n
5
90
P
n
6
91
P
n
7
92
P
ASP
93
n
8
ASP
93
P
ASN
94
n
9
ASN
94
P
PRO
95
n
10
PRO
95
P
ALA
96
n
11
ALA
96
P
SER
97
n
12
SER
97
P
THR
98
n
13
THR
98
P
THR
99
n
14
THR
99
P
ASN
100
n
15
ASN
100
P
LYS
101
n
16
LYS
101
P
ASP
102
n
17
ASP
102
P
LYS
103
n
18
LYS
103
P
ASP
1
n
1
ASP
1
L
VAL
2
n
2
VAL
2
L
VAL
3
n
3
VAL
3
L
MET
4
n
4
MET
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
THR
7
n
7
THR
7
L
PRO
8
n
8
PRO
8
L
LEU
9
n
9
LEU
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
PRO
12
n
12
PRO
12
L
VAL
13
n
13
VAL
13
L
SER
14
n
14
SER
14
L
LEU
15
n
15
LEU
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
GLN
18
n
18
GLN
18
L
ALA
19
n
19
ALA
19
L
SER
20
n
20
SER
20
L
ILE
21
n
21
ILE
21
L
SER
22
n
22
SER
22
L
CYS
23
n
23
CYS
23
L
SER
24
n
24
SER
24
L
SER
25
n
25
SER
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
27
n
28
A
SER
27
L
LEU
27
n
29
B
LEU
27
L
VAL
27
n
30
C
VAL
27
L
HIS
27
n
31
D
HIS
27
L
SER
27
n
32
E
SER
27
L
ASN
28
n
33
ASN
28
L
GLY
29
n
34
GLY
29
L
LYS
30
n
35
LYS
30
L
THR
31
n
36
THR
31
L
TYR
32
n
37
TYR
32
L
LEU
33
n
38
LEU
33
L
HIS
34
n
39
HIS
34
L
TRP
35
n
40
TRP
35
L
TYR
36
n
41
TYR
36
L
LEU
37
n
42
LEU
37
L
GLN
38
n
43
GLN
38
L
LYS
39
n
44
LYS
39
L
PRO
40
n
45
PRO
40
L
GLY
41
n
46
GLY
41
L
GLN
42
n
47
GLN
42
L
SER
43
n
48
SER
43
L
PRO
44
n
49
PRO
44
L
LYS
45
n
50
LYS
45
L
LEU
46
n
51
LEU
46
L
LEU
47
n
52
LEU
47
L
ILE
48
n
53
ILE
48
L
TYR
49
n
54
TYR
49
L
LYS
50
n
55
LYS
50
L
VAL
51
n
56
VAL
51
L
SER
52
n
57
SER
52
L
ASN
53
n
58
ASN
53
L
ARG
54
n
59
ARG
54
L
PHE
55
n
60
PHE
55
L
SER
56
n
61
SER
56
L
GLY
57
n
62
GLY
57
L
VAL
58
n
63
VAL
58
L
PRO
59
n
64
PRO
59
L
ASP
60
n
65
ASP
60
L
ARG
61
n
66
ARG
61
L
PHE
62
n
67
PHE
62
L
SER
63
n
68
SER
63
L
GLY
64
n
69
GLY
64
L
SER
65
n
70
SER
65
L
GLY
66
n
71
GLY
66
L
SER
67
n
72
SER
67
L
GLY
68
n
73
GLY
68
L
THR
69
n
74
THR
69
L
TYR
70
n
75
TYR
70
L
PHE
71
n
76
PHE
71
L
THR
72
n
77
THR
72
L
LEU
73
n
78
LEU
73
L
LYS
74
n
79
LYS
74
L
ILE
75
n
80
ILE
75
L
SER
76
n
81
SER
76
L
ARG
77
n
82
ARG
77
L
VAL
78
n
83
VAL
78
L
GLU
79
n
84
GLU
79
L
ALA
80
n
85
ALA
80
L
GLU
81
n
86
GLU
81
L
ASP
82
n
87
ASP
82
L
LEU
83
n
88
LEU
83
L
GLY
84
n
89
GLY
84
L
VAL
85
n
90
VAL
85
L
TYR
86
n
91
TYR
86
L
PHE
87
n
92
PHE
87
L
CYS
88
n
93
CYS
88
L
SER
89
n
94
SER
89
L
GLN
90
n
95
GLN
90
L
SER
91
n
96
SER
91
L
THR
92
n
97
THR
92
L
HIS
93
n
98
HIS
93
L
VAL
94
n
99
VAL
94
L
PRO
95
n
100
PRO
95
L
TYR
96
n
101
TYR
96
L
THR
97
n
102
THR
97
L
PHE
98
n
103
PHE
98
L
GLY
99
n
104
GLY
99
L
GLY
100
n
105
GLY
100
L
GLY
101
n
106
GLY
101
L
THR
102
n
107
THR
102
L
LYS
103
n
108
LYS
103
L
LEU
104
n
109
LEU
104
L
GLU
105
n
110
GLU
105
L
ILE
106
n
111
ILE
106
L
LYS
107
n
112
LYS
107
L
ARG
108
n
113
ARG
108
L
ALA
109
n
114
ALA
109
L
ASP
110
n
115
ASP
110
L
ALA
111
n
116
ALA
111
L
ALA
112
n
117
ALA
112
L
PRO
113
n
118
PRO
113
L
THR
114
n
119
THR
114
L
VAL
115
n
120
VAL
115
L
SER
116
n
121
SER
116
L
ILE
117
n
122
ILE
117
L
PHE
118
n
123
PHE
118
L
PRO
119
n
124
PRO
119
L
PRO
120
n
125
PRO
120
L
SER
121
n
126
SER
121
L
SER
122
n
127
SER
122
L
GLU
123
n
128
GLU
123
L
GLN
124
n
129
GLN
124
L
LEU
125
n
130
LEU
125
L
THR
126
n
131
THR
126
L
SER
127
n
132
SER
127
L
GLY
128
n
133
GLY
128
L
GLY
129
n
134
GLY
129
L
ALA
130
n
135
ALA
130
L
SER
131
n
136
SER
131
L
VAL
132
n
137
VAL
132
L
VAL
133
n
138
VAL
133
L
CYS
134
n
139
CYS
134
L
PHE
135
n
140
PHE
135
L
LEU
136
n
141
LEU
136
L
ASN
137
n
142
ASN
137
L
ASN
138
n
143
ASN
138
L
PHE
139
n
144
PHE
139
L
TYR
140
n
145
TYR
140
L
PRO
141
n
146
PRO
141
L
LYS
142
n
147
LYS
142
L
ASP
143
n
148
ASP
143
L
ILE
144
n
149
ILE
144
L
ASN
145
n
150
ASN
145
L
VAL
146
n
151
VAL
146
L
LYS
147
n
152
LYS
147
L
TRP
148
n
153
TRP
148
L
LYS
149
n
154
LYS
149
L
ILE
150
n
155
ILE
150
L
ASP
151
n
156
ASP
151
L
GLY
152
n
157
GLY
152
L
SER
153
n
158
SER
153
L
GLU
154
n
159
GLU
154
L
VAL
155
n
160
VAL
155
L
GLN
156
n
161
GLN
156
L
ASN
157
n
162
ASN
157
L
GLY
158
n
163
GLY
158
L
VAL
159
n
164
VAL
159
L
LEU
160
n
165
LEU
160
L
ASN
161
n
166
ASN
161
L
SER
162
n
167
SER
162
L
TRP
163
n
168
TRP
163
L
THR
164
n
169
THR
164
L
ASP
165
n
170
ASP
165
L
GLN
166
n
171
GLN
166
L
ASP
167
n
172
ASP
167
L
SER
168
n
173
SER
168
L
LYS
169
n
174
LYS
169
L
ASP
170
n
175
ASP
170
L
SER
171
n
176
SER
171
L
THR
172
n
177
THR
172
L
TYR
173
n
178
TYR
173
L
SER
174
n
179
SER
174
L
MET
175
n
180
MET
175
L
SER
176
n
181
SER
176
L
SER
177
n
182
SER
177
L
THR
178
n
183
THR
178
L
LEU
179
n
184
LEU
179
L
THR
180
n
185
THR
180
L
LEU
181
n
186
LEU
181
L
THR
182
n
187
THR
182
L
LYS
183
n
188
LYS
183
L
ASP
184
n
189
ASP
184
L
GLU
185
n
190
GLU
185
L
TYR
186
n
191
TYR
186
L
GLU
187
n
192
GLU
187
L
ARG
188
n
193
ARG
188
L
HIS
189
n
194
HIS
189
L
ASN
190
n
195
ASN
190
L
SER
191
n
196
SER
191
L
TYR
192
n
197
TYR
192
L
THR
193
n
198
THR
193
L
CYS
194
n
199
CYS
194
L
GLU
195
n
200
GLU
195
L
ALA
196
n
201
ALA
196
L
THR
197
n
202
THR
197
L
HIS
198
n
203
HIS
198
L
LYS
199
n
204
LYS
199
L
THR
200
n
205
THR
200
L
SER
201
n
206
SER
201
L
THR
202
n
207
THR
202
L
SER
203
n
208
SER
203
L
PRO
204
n
209
PRO
204
L
ILE
205
n
210
ILE
205
L
VAL
206
n
211
VAL
206
L
LYS
207
n
212
LYS
207
L
SER
208
n
213
SER
208
L
PHE
209
n
214
PHE
209
L
ASN
210
n
215
ASN
210
L
ARG
211
n
216
ARG
211
L
ASN
212
n
217
ASN
212
L
GLU
213
n
218
GLU
213
L
CYS
213
n
219
A
CYS
213
L
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
GLN
5
n
5
GLN
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
ALA
9
n
9
ALA
9
H
GLU
10
n
10
GLU
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
ARG
13
n
13
ARG
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
THR
16
n
16
THR
16
H
SER
17
n
17
SER
17
H
VAL
18
n
18
VAL
18
H
LYS
19
n
19
LYS
19
H
VAL
20
n
20
VAL
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
LYS
23
n
23
LYS
23
H
ALA
24
n
24
ALA
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
TYR
27
n
27
TYR
27
H
ALA
28
n
28
ALA
28
H
PHE
29
n
29
PHE
29
H
THR
30
n
30
THR
30
H
ASN
31
n
31
ASN
31
H
TYR
32
n
32
TYR
32
H
LEU
33
n
33
LEU
33
H
ILE
34
n
34
ILE
34
H
GLN
35
n
35
GLN
35
H
TRP
36
n
36
TRP
36
H
ILE
37
n
37
ILE
37
H
LYS
38
n
38
LYS
38
H
GLN
39
n
39
GLN
39
H
ARG
40
n
40
ARG
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
GLN
43
n
43
GLN
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
ILE
48
n
48
ILE
48
H
GLY
49
n
49
GLY
49
H
VAL
50
n
50
VAL
50
H
ILE
51
n
51
ILE
51
H
ASN
52
n
52
ASN
52
H
PRO
52
n
53
A
PRO
52
H
GLY
53
n
54
GLY
53
H
SER
54
n
55
SER
54
H
GLY
55
n
56
GLY
55
H
GLY
56
n
57
GLY
56
H
THR
57
n
58
THR
57
H
ASP
58
n
59
ASP
58
H
TYR
59
n
60
TYR
59
H
ASN
60
n
61
ASN
60
H
ALA
61
n
62
ALA
61
H
ASN
62
n
63
ASN
62
H
PHE
63
n
64
PHE
63
H
LYS
64
n
65
LYS
64
H
GLY
65
n
66
GLY
65
H
LYS
66
n
67
LYS
66
H
ALA
67
n
68
ALA
67
H
THR
68
n
69
THR
68
H
LEU
69
n
70
LEU
69
H
THR
70
n
71
THR
70
H
ALA
71
n
72
ALA
71
H
ASP
72
n
73
ASP
72
H
LYS
73
n
74
LYS
73
H
SER
74
n
75
SER
74
H
SER
75
n
76
SER
75
H
SER
76
n
77
SER
76
H
ILE
77
n
78
ILE
77
H
VAL
78
n
79
VAL
78
H
TYR
79
n
80
TYR
79
H
MET
80
n
81
MET
80
H
GLN
81
n
82
GLN
81
H
LEU
82
n
83
LEU
82
H
SER
82
n
84
A
SER
82
H
SER
82
n
85
B
SER
82
H
LEU
82
n
86
C
LEU
82
H
THR
83
n
87
THR
83
H
SER
84
n
88
SER
84
H
ASP
85
n
89
ASP
85
H
ASP
86
n
90
ASP
86
H
SER
87
n
91
SER
87
H
ALA
88
n
92
ALA
88
H
VAL
89
n
93
VAL
89
H
TYR
90
n
94
TYR
90
H
PHE
91
n
95
PHE
91
H
CYS
92
n
96
CYS
92
H
ALA
93
n
97
ALA
93
H
ARG
94
n
98
ARG
94
H
ASP
95
n
99
ASP
95
H
PHE
96
n
100
PHE
96
H
TYR
97
n
101
TYR
97
H
ASP
98
n
102
ASP
98
H
TYR
99
n
103
TYR
99
H
ASP
100
n
104
ASP
100
H
VAL
100
n
105
I
VAL
100
H
GLY
100
n
106
J
GLY
100
H
PHE
100
n
107
K
PHE
100
H
ASP
101
n
108
ASP
101
H
TYR
102
n
109
TYR
102
H
TRP
103
n
110
TRP
103
H
GLY
104
n
111
GLY
104
H
GLN
105
n
112
GLN
105
H
GLY
106
n
113
GLY
106
H
THR
107
n
114
THR
107
H
THR
108
n
115
THR
108
H
LEU
109
n
116
LEU
109
H
THR
110
n
117
THR
110
H
VAL
111
n
118
VAL
111
H
SER
112
n
119
SER
112
H
SER
113
n
120
SER
113
H
ALA
114
n
121
ALA
114
H
LYS
115
n
122
LYS
115
H
THR
116
n
123
THR
116
H
THR
117
n
124
THR
117
H
ALA
118
n
125
ALA
118
H
PRO
119
n
126
PRO
119
H
SER
120
n
127
SER
120
H
VAL
121
n
128
VAL
121
H
TYR
122
n
129
TYR
122
H
PRO
123
n
130
PRO
123
H
LEU
124
n
131
LEU
124
H
ALA
125
n
132
ALA
125
H
PRO
126
n
133
PRO
126
H
VAL
127
n
134
VAL
127
H
CYS
128
n
135
CYS
128
H
GLY
129
n
136
GLY
129
H
ASP
130
n
137
ASP
130
H
THR
133
n
138
THR
133
H
THR
134
n
139
THR
134
H
GLY
135
n
140
GLY
135
H
SER
136
n
141
SER
136
H
SER
137
n
142
SER
137
H
VAL
138
n
143
VAL
138
H
THR
139
n
144
THR
139
H
LEU
140
n
145
LEU
140
H
GLY
141
n
146
GLY
141
H
CYS
142
n
147
CYS
142
H
LEU
143
n
148
LEU
143
H
VAL
144
n
149
VAL
144
H
LYS
145
n
150
LYS
145
H
GLY
146
n
151
GLY
146
H
TYR
147
n
152
TYR
147
H
PHE
148
n
153
PHE
148
H
PRO
149
n
154
PRO
149
H
GLU
150
n
155
GLU
150
H
PRO
151
n
156
PRO
151
H
VAL
152
n
157
VAL
152
H
THR
153
n
158
THR
153
H
LEU
154
n
159
LEU
154
H
THR
156
n
160
THR
156
H
TRP
157
n
161
TRP
157
H
ASN
162
n
162
ASN
162
H
SER
163
n
163
SER
163
H
GLY
164
n
164
GLY
164
H
SER
165
n
165
SER
165
H
LEU
166
n
166
LEU
166
H
SER
167
n
167
SER
167
H
SER
168
n
168
SER
168
H
GLY
169
n
169
GLY
169
H
VAL
171
n
170
VAL
171
H
HIS
172
n
171
HIS
172
H
THR
173
n
172
THR
173
H
PHE
174
n
173
PHE
174
H
PRO
175
n
174
PRO
175
H
ALA
176
n
175
ALA
176
H
VAL
177
n
176
VAL
177
H
LEU
178
n
177
LEU
178
H
GLN
179
n
178
GLN
179
H
SER
180
n
179
SER
180
H
ASP
181
n
180
ASP
181
H
LEU
182
n
181
LEU
182
H
TYR
183
n
182
TYR
183
H
THR
184
n
183
THR
184
H
LEU
185
n
184
LEU
185
H
SER
186
n
185
SER
186
H
SER
187
n
186
SER
187
H
SER
188
n
187
SER
188
H
VAL
189
n
188
VAL
189
H
THR
190
n
189
THR
190
H
VAL
191
n
190
VAL
191
H
THR
192
n
191
THR
192
H
SER
193
n
192
SER
193
H
SER
194
n
193
SER
194
H
THR
195
n
194
THR
195
H
TRP
196
n
195
TRP
196
H
PRO
197
n
196
PRO
197
H
SER
198
n
197
SER
198
H
GLN
203
n
198
GLN
203
H
SER
204
n
199
SER
204
H
ILE
205
n
200
ILE
205
H
THR
206
n
201
THR
206
H
CYS
208
n
202
CYS
208
H
ASN
209
n
203
ASN
209
H
VAL
210
n
204
VAL
210
H
ALA
211
n
205
ALA
211
H
HIS
212
n
206
HIS
212
H
PRO
213
n
207
PRO
213
H
ALA
214
n
208
ALA
214
H
SER
215
n
209
SER
215
H
SER
216
n
210
SER
216
H
THR
217
n
211
THR
217
H
LYS
218
n
212
LYS
218
H
VAL
219
n
213
VAL
219
H
ASP
220
n
214
ASP
220
H
LYS
221
n
215
LYS
221
H
LYS
222
n
216
LYS
222
H
ILE
223
n
217
ILE
223
H
GLU
226
n
218
GLU
226
H
PRO
227
n
219
PRO
227
H
ARG
228
n
220
ARG
228
H
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
L
O
THR
5
B
O
THR
5
L
N
SER
24
B
N
SER
24
L
O
ALA
19
B
O
ALA
19
L
N
ILE
75
B
N
ILE
80
L
O
TYR
70
B
O
TYR
75
L
N
SER
67
B
N
SER
72
L
O
LEU
11
B
O
LEU
11
L
N
LYS
103
B
N
LYS
108
L
O
THR
102
B
O
THR
107
L
N
TYR
86
B
N
TYR
91
L
O
VAL
85
B
O
VAL
90
L
N
GLN
38
B
N
GLN
43
L
O
TRP
35
B
O
TRP
40
L
N
ILE
48
B
N
ILE
53
L
O
ALA
130
B
O
ALA
135
L
N
LEU
181
B
N
LEU
186
L
O
SER
176
B
O
SER
181
L
N
SER
162
B
N
SER
167
L
O
ASN
145
B
O
ASN
150
L
N
THR
197
B
N
THR
202
L
O
TYR
192
B
O
TYR
197
L
N
PHE
209
B
N
PHE
214
H
O
GLN
3
C
O
GLN
3
H
N
SER
25
C
N
SER
25
H
O
VAL
18
C
O
VAL
18
H
N
LEU
82
C
N
LEU
83
H
O
ILE
77
C
O
ILE
78
H
N
ASP
72
C
N
ASP
73
H
O
GLU
10
C
O
GLU
10
H
N
THR
108
C
N
THR
115
H
O
THR
107
C
O
THR
114
H
N
TYR
90
C
N
TYR
94
H
O
ALA
93
C
O
ALA
97
H
N
GLN
35
C
N
GLN
35
H
O
ILE
34
C
O
ILE
34
H
N
ILE
51
C
N
ILE
51
H
O
VAL
50
C
O
VAL
50
H
N
ASP
58
C
N
ASP
59
H
O
SER
120
C
O
SER
127
H
N
LYS
145
C
N
LYS
150
H
O
VAL
138
C
O
VAL
143
H
N
VAL
191
C
N
VAL
190
H
O
SER
188
C
O
SER
187
H
N
HIS
172
C
N
HIS
171
H
O
THR
153
C
O
THR
158
H
N
ALA
211
C
N
ALA
205
H
O
CYS
208
C
O
CYS
202
H
N
LYS
221
C
N
LYS
215
A
1
L
SG
CYS
213
B
SG
CYS
219
1
Y
1
P
CYS
86
A
CYS
1
1
Y
1
P
VAL
87
A
VAL
2
1
Y
1
P
THR
88
A
THR
3
1
Y
1
P
ILE
89
A
ILE
4
1
Y
1
P
MET
90
A
MET
5
1
Y
1
P
THR
91
A
THR
6
1
Y
1
P
VAL
92
A
VAL
7
1
Y
1
P
ASN
94
10.58
1
H
H
ARG
PRO
40
41
-112.67
1
L
TYR
32
0.068
SIDE CHAIN
1
H
TYR
59
0.085
SIDE CHAIN
1
-13.30
1.90
121.10
107.80
P
P
P
O
C
N
ASN
ASN
PRO
94
94
95
Y
1
9.39
1.50
103.20
112.59
P
P
P
N
CD
CG
PRO
PRO
PRO
95
95
95
N
1
-12.61
2.10
109.00
96.39
P
P
P
CA
CB
OG1
THR
THR
THR
98
98
98
N
1
8.66
1.40
112.40
121.06
P
P
P
CA
CB
CG2
THR
THR
THR
98
98
98
N
1
-16.71
2.60
111.60
94.89
P
P
P
CB
CG
CD
LYS
LYS
LYS
103
103
103
N
1
9.05
1.10
114.20
123.25
L
L
L
CA
CB
SG
CYS
CYS
CYS
23
23
23
N
1
-14.46
2.20
113.40
98.94
L
L
L
CA
CB
CG
GLN
GLN
GLN
27
27
27
N
1
14.92
2.30
115.30
130.22
L
L
L
CA
CB
CG
LEU
LEU
LEU
33
33
33
N
1
5.88
0.80
106.30
112.18
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
35
35
35
N
1
-5.42
0.80
107.30
101.88
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
35
35
35
N
1
-3.74
0.60
121.00
117.26
L
L
L
CB
CG
CD2
TYR
TYR
TYR
49
49
49
N
1
19.11
2.20
117.20
136.31
L
L
L
CA
C
N
TYR
TYR
LYS
49
49
50
Y
1
-13.23
1.60
110.90
97.67
L
L
L
CG1
CB
CG2
VAL
VAL
VAL
51
51
51
N
1
4.35
0.50
120.30
124.65
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
61
61
61
N
1
-3.88
0.50
120.30
116.42
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
61
61
61
N
1
-13.30
2.20
117.20
103.90
L
L
L
CA
C
N
THR
THR
VAL
114
114
115
Y
1
17.17
2.30
115.30
132.47
L
L
L
CA
CB
CG
LEU
LEU
LEU
136
136
136
N
1
7.01
0.80
106.30
113.31
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
148
148
148
N
1
-9.12
1.30
127.00
117.88
L
L
L
CB
CG
CD1
TRP
TRP
TRP
148
148
148
N
1
-6.87
0.80
107.30
100.43
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
148
148
148
N
1
6.89
0.90
133.90
140.79
L
L
L
CG
CD2
CE3
TRP
TRP
TRP
148
148
148
N
1
6.48
0.80
106.30
112.78
L
L
L
CD1
CG
CD2
TRP
TRP
TRP
163
163
163
N
1
-6.25
0.80
107.30
101.05
L
L
L
CE2
CD2
CG
TRP
TRP
TRP
163
163
163
N
1
6.13
0.90
133.90
140.03
L
L
L
CG
CD2
CE3
TRP
TRP
TRP
163
163
163
N
1
3.06
0.50
120.30
123.36
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
188
188
188
N
1
-4.18
0.60
121.00
116.82
L
L
L
CB
CG
CD1
TYR
TYR
TYR
192
192
192
N
1
5.21
0.50
120.30
125.51
L
L
L
NE
CZ
NH1
ARG
ARG
ARG
211
211
211
N
1
-3.85
0.50
120.30
116.45
L
L
L
NE
CZ
NH2
ARG
ARG
ARG
211
211
211
N
1
14.14
2.20
113.40
127.54
H
H
H
CA
CB
CG
GLN
GLN
GLN
3
3
3
N
1
-11.22
1.60
110.90
99.68
H
H
H
CG1
CB
CG2
VAL
VAL
VAL
18
18
18
N
1
7.30
0.80
106.30
113.60
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
36
36
36
N
1
-6.15
0.80
107.30
101.15
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
36
36
36
N
1
-11.53
1.80
110.60
99.07
H
H
H
N
CA
CB
GLN
GLN
GLN
43
43
43
N
1
8.08
0.80
106.30
114.38
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
47
47
47
N
1
-6.31
1.00
110.10
103.79
H
H
H
CG
CD1
NE1
TRP
TRP
TRP
47
47
47
N
1
-6.50
0.80
107.30
100.80
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
47
47
47
N
1
12.06
2.00
116.20
128.26
H
H
H
CA
C
N
ILE
ILE
GLY
48
48
49
Y
1
-14.14
1.90
111.40
97.26
H
H
H
CB
CA
C
VAL
VAL
VAL
50
50
50
N
1
-14.38
2.20
113.40
99.02
H
H
H
CA
CB
CG
GLN
GLN
GLN
81
81
81
N
1
4.63
0.60
121.00
125.63
H
H
H
CB
CG
CD2
TYR
TYR
TYR
99
99
99
N
1
-6.78
0.60
121.00
114.22
H
H
H
CB
CG
CD1
TYR
TYR
TYR
99
99
99
N
1
6.04
0.80
106.30
112.34
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
103
103
103
N
1
-5.66
0.80
107.30
101.64
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
103
103
103
N
1
-4.08
0.60
121.00
116.92
H
H
H
CB
CG
CD2
TYR
TYR
TYR
122
122
122
N
1
-13.29
2.20
117.20
103.91
H
H
H
CA
C
N
GLY
GLY
SER
135
135
136
Y
1
-21.36
1.80
114.00
92.64
H
H
H
CA
CB
SG
CYS
CYS
CYS
142
142
142
N
1
-11.10
1.60
110.90
99.80
H
H
H
CG1
CB
CG2
VAL
VAL
VAL
144
144
144
N
1
18.48
2.60
112.10
130.58
H
H
H
N
CA
C
PRO
PRO
PRO
151
151
151
N
1
10.52
1.40
112.40
122.92
H
H
H
CA
CB
CG2
THR
THR
THR
156
156
156
N
1
6.79
0.80
106.30
113.09
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
157
157
157
N
1
-7.81
1.30
127.00
119.19
H
H
H
CB
CG
CD1
TRP
TRP
TRP
157
157
157
N
1
-6.57
0.80
107.30
100.73
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
157
157
157
N
1
14.06
2.20
117.20
131.26
H
H
H
CA
C
N
GLN
GLN
SER
179
179
180
Y
1
-17.75
2.70
111.20
93.45
H
H
H
CA
CB
OG
SER
SER
SER
186
186
186
N
1
6.32
0.80
106.30
112.62
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
196
196
196
N
1
-5.70
0.80
107.30
101.60
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
196
196
196
N
1
3.23
0.50
120.30
123.53
H
H
H
NE
CZ
NH1
ARG
ARG
ARG
228
228
228
N
D
D
1
L
L
NE2
CD2
HIS
HIS
27
27
-0.076
0.011
1.373
1.297
N
1
L
L
NE2
CD2
HIS
HIS
34
34
-0.090
0.011
1.373
1.283
N
1
H
H
NE2
CD2
HIS
HIS
172
172
-0.080
0.011
1.373
1.293
N
1
H
H
NE2
CD2
HIS
HIS
212
212
-0.082
0.011
1.373
1.291
N
1
L
VAL
2
89.46
79.54
1
L
LEU
15
-37.50
135.44
E
1
L
SER
27
-15.66
-39.98
1
L
TYR
32
-101.20
71.48
1
L
GLN
42
-55.01
175.94
1
L
VAL
51
-161.60
-43.04
1
L
LYS
107
-113.80
59.12
1
L
ASN
138
32.85
43.45
1
L
TYR
140
-176.05
125.94
1
L
SER
171
56.58
11.03
1
L
ARG
188
-97.07
51.15
1
L
HIS
198
-150.39
-124.21
1
L
LYS
199
-145.88
-16.68
1
L
ARG
211
-27.75
-32.73
1
H
PHE
29
-28.67
-46.29
1
H
LYS
66
-89.70
-70.43
1
H
SER
75
-158.57
53.82
1
H
SER
76
21.82
51.15
B
1
H
SER
82
48.60
71.13
1
H
SER
84
-29.39
-37.81
I
1
H
VAL
100
-142.29
33.59
1
H
ASP
101
-21.23
-79.60
1
H
SER
112
-170.37
147.94
1
H
CYS
128
-32.17
-70.77
1
H
ASP
130
-135.88
-140.37
1
H
THR
134
-156.81
-127.16
1
H
SER
136
-140.73
-98.86
1
H
LEU
140
-173.79
-179.37
1
H
GLN
179
-82.16
-109.84
1
H
ASP
181
59.85
-1.24
1
H
SER
193
-28.33
-30.13
1
H
GLN
203
-125.94
-71.77
1
H
SER
204
178.58
132.45
1
H
ALA
214
-63.74
10.70
0.23
0.23
3.0
10.0
13342
1
0.0
3.0
10.0
39
3465
0
0
3426
0.018
3.6
model building
X-PLOR
refinement
X-PLOR
phasing
X-PLOR
IGG2A FAB FRAGMENT (C3) COMPLEXED WITH POLIOVIRUS TYPE 1 (MAHONEY STRAIN) FRAGMENT (RESIDUES 86 - 103)
THREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN THE FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS AND ITS VIRAL EPITOPE
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
L
ALA
80
B
ALA
85
HELX_P
L
ASP
82
B
ASP
87
5
1
3
L
SER
122
B
SER
127
HELX_P
L
THR
126
B
THR
131
1
2
5
L
LYS
183
B
LYS
188
HELX_P
L
GLU
187
B
GLU
192
1
3
5
H
PHE
29
C
PHE
29
HELX_P
H
ASN
31
C
ASN
31
5
4
3
H
LYS
73
C
LYS
74
HELX_P
H
SER
75
C
SER
76
5
5
3
H
SER
84
C
SER
88
HELX_P
H
ASP
86
C
ASP
90
5
6
3
H
ASN
162
C
ASN
162
HELX_P
H
GLY
164
C
GLY
164
5
7
3
H
PRO
213
C
PRO
207
HELX_P
H
SER
215
C
SER
209
5
8
3
disulf
2.391
L
CYS
23
B
SG
CYS
23
1_555
L
CYS
88
B
SG
CYS
93
1_555
disulf
2.644
L
CYS
134
B
SG
CYS
139
1_555
L
CYS
194
B
SG
CYS
199
1_555
disulf
2.409
H
CYS
22
C
SG
CYS
22
1_555
H
CYS
92
C
SG
CYS
96
1_555
disulf
2.586
H
CYS
142
C
SG
CYS
147
1_555
H
CYS
208
C
SG
CYS
202
1_555
COMPLEX (ANTIBODY/PV-1 FRAGMENT)
COMPLEX (ANTIBODY-PV-1 FRAGMENT), COMPLEX (ANTIBODY-PV-1 FRAGMENT) complex
L
THR
7
B
THR
7
1
L
PRO
8
B
PRO
8
0.30
L
VAL
94
B
VAL
99
1
L
PRO
95
B
PRO
100
-0.45
L
TYR
140
B
TYR
145
1
L
PRO
141
B
PRO
146
-1.23
H
PHE
148
C
PHE
153
1
H
PRO
149
C
PRO
154
-1.08
H
GLU
150
C
GLU
155
1
H
PRO
151
C
PRO
156
2.98
POLG_POL1M
UNP
1
663
P03299
GCAM_MOUSE
UNP
3
1
P01865
1FPT
PDB
2
1FPT
663
680
1FPT
86
103
P03299
P
1
1
18
1
100
1FPT
114
228
P01865
H
2
121
220
1
213
1FPT
1
213
1FPT
A
L
3
1
219
4
5
3
3
4
3
4
4
3
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
L
MET
4
B
MET
4
L
THR
7
B
THR
7
L
ALA
19
B
ALA
19
L
SER
25
B
SER
25
L
TYR
70
B
TYR
75
L
ILE
75
B
ILE
80
L
PHE
62
B
PHE
67
L
SER
67
B
SER
72
L
SER
10
B
SER
10
L
VAL
13
B
VAL
13
L
THR
102
B
THR
107
L
ILE
106
B
ILE
111
L
GLY
84
B
GLY
89
L
GLN
90
B
GLN
95
L
LEU
33
B
LEU
38
L
GLN
38
B
GLN
43
L
LYS
45
B
LYS
50
L
ILE
48
B
ILE
53
L
GLY
129
B
GLY
134
L
LEU
136
B
LEU
141
L
MET
175
B
MET
180
L
THR
182
B
THR
187
L
VAL
159
B
VAL
164
L
TRP
163
B
TRP
168
L
ASN
145
B
ASN
150
L
ILE
150
B
ILE
155
L
SER
191
B
SER
196
L
THR
197
B
THR
202
L
LYS
207
B
LYS
212
L
ASN
210
B
ASN
215
H
GLN
3
C
GLN
3
H
GLN
6
C
GLN
6
H
VAL
18
C
VAL
18
H
SER
25
C
SER
25
H
ILE
77
C
ILE
78
H
LEU
82
C
LEU
83
H
ALA
67
C
ALA
68
H
ASP
72
C
ASP
73
H
ALA
9
C
ALA
9
H
VAL
12
C
VAL
12
H
THR
107
C
THR
114
H
VAL
111
C
VAL
118
H
ALA
88
C
ALA
92
H
TYR
90
C
TYR
94
H
ALA
93
C
ALA
97
H
PHE
96
C
PHE
100
H
TYR
32
C
TYR
32
H
GLN
39
C
GLN
39
H
LEU
45
C
LEU
45
H
ILE
51
C
ILE
51
H
THR
57
C
THR
58
H
TYR
59
C
TYR
60
H
SER
120
C
SER
127
H
LEU
124
C
LEU
131
H
SER
137
C
SER
142
H
LYS
145
C
LYS
150
H
LEU
185
C
LEU
184
H
THR
192
C
THR
191
H
VAL
171
C
VAL
170
H
THR
173
C
THR
172
H
VAL
152
C
VAL
157
H
TRP
157
C
TRP
161
H
THR
206
C
THR
201
H
HIS
212
C
HIS
206
H
THR
217
C
THR
211
H
LYS
222
C
LYS
216
182
P 63 2 2