0.007705 0.004449 0.000000 0.000000 0.008897 0.000000 0.000000 0.000000 0.006953 0.00000 0.00000 0.00000 CIS PROLINE - PRO L 8 CIS PROLINE - PRO L 95 CIS PROLINE - PRO L 141 ARG H 40 - PRO H 41 OMEGA = 247.33 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION CIS PROLINE - PRO H 149 CIS PROLINE - PRO H 151 Wien, M.W. Hogle, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 129.785 129.785 143.829 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Struct.Biol. NSBIEW 2024 1072-8368 2 232 243 10.1038/nsb0395-232 7539711 Structure of the complex between the Fab fragment of a neutralizing antibody for type 1 poliovirus and its viral epitope. 1995 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 1940.200 FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS 1 man polymer 24080.750 IGG2A-KAPPA C3 FAB (LIGHT CHAIN) 1 man polymer 23478.137 IGG2A-KAPPA C3 FAB (HEAVY CHAIN) 1 man polymer 18.015 water 39 nat water no no CVTIMTVDNPASTTNKDK CVTIMTVDNPASTTNKDK P polypeptide(L) no no DVVMTQTPLSLPVSLGDQASISCSSSQSLVHSNGKTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTYFTLKI SRVEAEDLGVYFCSQSTHVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSEV QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC DVVMTQTPLSLPVSLGDQASISCSSSQSLVHSNGKTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTYFTLKI SRVEAEDLGVYFCSQSTHVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSEV QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC L polypeptide(L) no no QVQLQQSGAELVRPGTSVKVSCKASGYAFTNYLIQWIKQRPGQGLEWIGVINPGSGGTDYNANFKGKATLTADKSSSIVY MQLSSLTSDDSAVYFCARDFYDYDVGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR QVQLQQSGAELVRPGTSVKVSCKASGYAFTNYLIQWIKQRPGQGLEWIGVINPGSGGTDYNANFKGKATLTADKSSSIVY MQLSSLTSDDSAVYFCARDFYDYDVGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Enterovirus Poliovirus Mahoney sample 12081 Human poliovirus 1 house mouse Mus sample 10090 Mus musculus house mouse Mus sample 10090 Mus musculus 3.53 65.16 repository Initial release Version format compliance Source and taxonomy Version format compliance 1 0 1995-03-31 1 1 2008-03-24 1 2 2011-07-13 Y 1995-01-26 REL HOH water THE FAB FRAGMENT IS NUMBERED ACCORDING TO THE CONVENTION OF E. KABAT (E.A. KABAT, T.T. WU, M. REID-MILLER, H.M. PERRY, K.S. GOTTESMAN, SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, 4TH ED., (1987), NATIONAL INSTITUTE OF HEALTH, BETHESDA, MD. THE PEPTIDE IS NUMBERED ACCORDING TO THE POLIOVIRUS TYPE 1 SEQUENCE (MAHONEY STRAIN) (V.R. RANCANIELLO AND D. BALTIMORE (1981) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, USA V. 78, 4887-4891). THE PEPTIDE USED WAS A SYNTHETIC HOMOLOGUE OF RESIDUES 86 - 103 OF PV-1 VP1 (MAHONEY STRAIN). PV-1 VP1 RESIDUES ARE (CVTIMYVDNPASTTNKDK). DUE TO DISORDER, RESIDUES 86 - 92 ARE NOT PRESENTED IN THE RECORDS BELOW. HOH 23 4 HOH HOH 23 P HOH 28 4 HOH HOH 28 P HOH 6 4 HOH HOH 214 L HOH 7 4 HOH HOH 215 L HOH 9 4 HOH HOH 216 L HOH 12 4 HOH HOH 217 L HOH 14 4 HOH HOH 218 L HOH 15 4 HOH HOH 219 L HOH 16 4 HOH HOH 220 L HOH 18 4 HOH HOH 221 L HOH 20 4 HOH HOH 222 L HOH 22 4 HOH HOH 223 L HOH 24 4 HOH HOH 224 L HOH 25 4 HOH HOH 225 L HOH 26 4 HOH HOH 226 L HOH 29 4 HOH HOH 227 L HOH 30 4 HOH HOH 228 L HOH 31 4 HOH HOH 229 L HOH 39 4 HOH HOH 230 L HOH 1 4 HOH HOH 229 H HOH 2 4 HOH HOH 230 H HOH 3 4 HOH HOH 231 H HOH 4 4 HOH HOH 232 H HOH 5 4 HOH HOH 233 H HOH 8 4 HOH HOH 234 H HOH 10 4 HOH HOH 235 H HOH 11 4 HOH HOH 236 H HOH 13 4 HOH HOH 237 H HOH 17 4 HOH HOH 238 H HOH 19 4 HOH HOH 239 H HOH 21 4 HOH HOH 240 H HOH 27 4 HOH HOH 241 H HOH 32 4 HOH HOH 242 H HOH 33 4 HOH HOH 243 H HOH 34 4 HOH HOH 244 H HOH 35 4 HOH HOH 245 H HOH 36 4 HOH HOH 246 H HOH 37 4 HOH HOH 247 H HOH 38 4 HOH HOH 248 H n 1 86 P n 2 87 P n 3 88 P n 4 89 P n 5 90 P n 6 91 P n 7 92 P ASP 93 n 8 ASP 93 P ASN 94 n 9 ASN 94 P PRO 95 n 10 PRO 95 P ALA 96 n 11 ALA 96 P SER 97 n 12 SER 97 P THR 98 n 13 THR 98 P THR 99 n 14 THR 99 P ASN 100 n 15 ASN 100 P LYS 101 n 16 LYS 101 P ASP 102 n 17 ASP 102 P LYS 103 n 18 LYS 103 P ASP 1 n 1 ASP 1 L VAL 2 n 2 VAL 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L THR 7 n 7 THR 7 L PRO 8 n 8 PRO 8 L LEU 9 n 9 LEU 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L PRO 12 n 12 PRO 12 L VAL 13 n 13 VAL 13 L SER 14 n 14 SER 14 L LEU 15 n 15 LEU 15 L GLY 16 n 16 GLY 16 L ASP 17 n 17 ASP 17 L GLN 18 n 18 GLN 18 L ALA 19 n 19 ALA 19 L SER 20 n 20 SER 20 L ILE 21 n 21 ILE 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L SER 24 n 24 SER 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 27 n 28 A SER 27 L LEU 27 n 29 B LEU 27 L VAL 27 n 30 C VAL 27 L HIS 27 n 31 D HIS 27 L SER 27 n 32 E SER 27 L ASN 28 n 33 ASN 28 L GLY 29 n 34 GLY 29 L LYS 30 n 35 LYS 30 L THR 31 n 36 THR 31 L TYR 32 n 37 TYR 32 L LEU 33 n 38 LEU 33 L HIS 34 n 39 HIS 34 L TRP 35 n 40 TRP 35 L TYR 36 n 41 TYR 36 L LEU 37 n 42 LEU 37 L GLN 38 n 43 GLN 38 L LYS 39 n 44 LYS 39 L PRO 40 n 45 PRO 40 L GLY 41 n 46 GLY 41 L GLN 42 n 47 GLN 42 L SER 43 n 48 SER 43 L PRO 44 n 49 PRO 44 L LYS 45 n 50 LYS 45 L LEU 46 n 51 LEU 46 L LEU 47 n 52 LEU 47 L ILE 48 n 53 ILE 48 L TYR 49 n 54 TYR 49 L LYS 50 n 55 LYS 50 L VAL 51 n 56 VAL 51 L SER 52 n 57 SER 52 L ASN 53 n 58 ASN 53 L ARG 54 n 59 ARG 54 L PHE 55 n 60 PHE 55 L SER 56 n 61 SER 56 L GLY 57 n 62 GLY 57 L VAL 58 n 63 VAL 58 L PRO 59 n 64 PRO 59 L ASP 60 n 65 ASP 60 L ARG 61 n 66 ARG 61 L PHE 62 n 67 PHE 62 L SER 63 n 68 SER 63 L GLY 64 n 69 GLY 64 L SER 65 n 70 SER 65 L GLY 66 n 71 GLY 66 L SER 67 n 72 SER 67 L GLY 68 n 73 GLY 68 L THR 69 n 74 THR 69 L TYR 70 n 75 TYR 70 L PHE 71 n 76 PHE 71 L THR 72 n 77 THR 72 L LEU 73 n 78 LEU 73 L LYS 74 n 79 LYS 74 L ILE 75 n 80 ILE 75 L SER 76 n 81 SER 76 L ARG 77 n 82 ARG 77 L VAL 78 n 83 VAL 78 L GLU 79 n 84 GLU 79 L ALA 80 n 85 ALA 80 L GLU 81 n 86 GLU 81 L ASP 82 n 87 ASP 82 L LEU 83 n 88 LEU 83 L GLY 84 n 89 GLY 84 L VAL 85 n 90 VAL 85 L TYR 86 n 91 TYR 86 L PHE 87 n 92 PHE 87 L CYS 88 n 93 CYS 88 L SER 89 n 94 SER 89 L GLN 90 n 95 GLN 90 L SER 91 n 96 SER 91 L THR 92 n 97 THR 92 L HIS 93 n 98 HIS 93 L VAL 94 n 99 VAL 94 L PRO 95 n 100 PRO 95 L TYR 96 n 101 TYR 96 L THR 97 n 102 THR 97 L PHE 98 n 103 PHE 98 L GLY 99 n 104 GLY 99 L GLY 100 n 105 GLY 100 L GLY 101 n 106 GLY 101 L THR 102 n 107 THR 102 L LYS 103 n 108 LYS 103 L LEU 104 n 109 LEU 104 L GLU 105 n 110 GLU 105 L ILE 106 n 111 ILE 106 L LYS 107 n 112 LYS 107 L ARG 108 n 113 ARG 108 L ALA 109 n 114 ALA 109 L ASP 110 n 115 ASP 110 L ALA 111 n 116 ALA 111 L ALA 112 n 117 ALA 112 L PRO 113 n 118 PRO 113 L THR 114 n 119 THR 114 L VAL 115 n 120 VAL 115 L SER 116 n 121 SER 116 L ILE 117 n 122 ILE 117 L PHE 118 n 123 PHE 118 L PRO 119 n 124 PRO 119 L PRO 120 n 125 PRO 120 L SER 121 n 126 SER 121 L SER 122 n 127 SER 122 L GLU 123 n 128 GLU 123 L GLN 124 n 129 GLN 124 L LEU 125 n 130 LEU 125 L THR 126 n 131 THR 126 L SER 127 n 132 SER 127 L GLY 128 n 133 GLY 128 L GLY 129 n 134 GLY 129 L ALA 130 n 135 ALA 130 L SER 131 n 136 SER 131 L VAL 132 n 137 VAL 132 L VAL 133 n 138 VAL 133 L CYS 134 n 139 CYS 134 L PHE 135 n 140 PHE 135 L LEU 136 n 141 LEU 136 L ASN 137 n 142 ASN 137 L ASN 138 n 143 ASN 138 L PHE 139 n 144 PHE 139 L TYR 140 n 145 TYR 140 L PRO 141 n 146 PRO 141 L LYS 142 n 147 LYS 142 L ASP 143 n 148 ASP 143 L ILE 144 n 149 ILE 144 L ASN 145 n 150 ASN 145 L VAL 146 n 151 VAL 146 L LYS 147 n 152 LYS 147 L TRP 148 n 153 TRP 148 L LYS 149 n 154 LYS 149 L ILE 150 n 155 ILE 150 L ASP 151 n 156 ASP 151 L GLY 152 n 157 GLY 152 L SER 153 n 158 SER 153 L GLU 154 n 159 GLU 154 L VAL 155 n 160 VAL 155 L GLN 156 n 161 GLN 156 L ASN 157 n 162 ASN 157 L GLY 158 n 163 GLY 158 L VAL 159 n 164 VAL 159 L LEU 160 n 165 LEU 160 L ASN 161 n 166 ASN 161 L SER 162 n 167 SER 162 L TRP 163 n 168 TRP 163 L THR 164 n 169 THR 164 L ASP 165 n 170 ASP 165 L GLN 166 n 171 GLN 166 L ASP 167 n 172 ASP 167 L SER 168 n 173 SER 168 L LYS 169 n 174 LYS 169 L ASP 170 n 175 ASP 170 L SER 171 n 176 SER 171 L THR 172 n 177 THR 172 L TYR 173 n 178 TYR 173 L SER 174 n 179 SER 174 L MET 175 n 180 MET 175 L SER 176 n 181 SER 176 L SER 177 n 182 SER 177 L THR 178 n 183 THR 178 L LEU 179 n 184 LEU 179 L THR 180 n 185 THR 180 L LEU 181 n 186 LEU 181 L THR 182 n 187 THR 182 L LYS 183 n 188 LYS 183 L ASP 184 n 189 ASP 184 L GLU 185 n 190 GLU 185 L TYR 186 n 191 TYR 186 L GLU 187 n 192 GLU 187 L ARG 188 n 193 ARG 188 L HIS 189 n 194 HIS 189 L ASN 190 n 195 ASN 190 L SER 191 n 196 SER 191 L TYR 192 n 197 TYR 192 L THR 193 n 198 THR 193 L CYS 194 n 199 CYS 194 L GLU 195 n 200 GLU 195 L ALA 196 n 201 ALA 196 L THR 197 n 202 THR 197 L HIS 198 n 203 HIS 198 L LYS 199 n 204 LYS 199 L THR 200 n 205 THR 200 L SER 201 n 206 SER 201 L THR 202 n 207 THR 202 L SER 203 n 208 SER 203 L PRO 204 n 209 PRO 204 L ILE 205 n 210 ILE 205 L VAL 206 n 211 VAL 206 L LYS 207 n 212 LYS 207 L SER 208 n 213 SER 208 L PHE 209 n 214 PHE 209 L ASN 210 n 215 ASN 210 L ARG 211 n 216 ARG 211 L ASN 212 n 217 ASN 212 L GLU 213 n 218 GLU 213 L CYS 213 n 219 A CYS 213 L GLN 1 n 1 GLN 1 H VAL 2 n 2 VAL 2 H GLN 3 n 3 GLN 3 H LEU 4 n 4 LEU 4 H GLN 5 n 5 GLN 5 H GLN 6 n 6 GLN 6 H SER 7 n 7 SER 7 H GLY 8 n 8 GLY 8 H ALA 9 n 9 ALA 9 H GLU 10 n 10 GLU 10 H LEU 11 n 11 LEU 11 H VAL 12 n 12 VAL 12 H ARG 13 n 13 ARG 13 H PRO 14 n 14 PRO 14 H GLY 15 n 15 GLY 15 H THR 16 n 16 THR 16 H SER 17 n 17 SER 17 H VAL 18 n 18 VAL 18 H LYS 19 n 19 LYS 19 H VAL 20 n 20 VAL 20 H SER 21 n 21 SER 21 H CYS 22 n 22 CYS 22 H LYS 23 n 23 LYS 23 H ALA 24 n 24 ALA 24 H SER 25 n 25 SER 25 H GLY 26 n 26 GLY 26 H TYR 27 n 27 TYR 27 H ALA 28 n 28 ALA 28 H PHE 29 n 29 PHE 29 H THR 30 n 30 THR 30 H ASN 31 n 31 ASN 31 H TYR 32 n 32 TYR 32 H LEU 33 n 33 LEU 33 H ILE 34 n 34 ILE 34 H GLN 35 n 35 GLN 35 H TRP 36 n 36 TRP 36 H ILE 37 n 37 ILE 37 H LYS 38 n 38 LYS 38 H GLN 39 n 39 GLN 39 H ARG 40 n 40 ARG 40 H PRO 41 n 41 PRO 41 H GLY 42 n 42 GLY 42 H GLN 43 n 43 GLN 43 H GLY 44 n 44 GLY 44 H LEU 45 n 45 LEU 45 H GLU 46 n 46 GLU 46 H TRP 47 n 47 TRP 47 H ILE 48 n 48 ILE 48 H GLY 49 n 49 GLY 49 H VAL 50 n 50 VAL 50 H ILE 51 n 51 ILE 51 H ASN 52 n 52 ASN 52 H PRO 52 n 53 A PRO 52 H GLY 53 n 54 GLY 53 H SER 54 n 55 SER 54 H GLY 55 n 56 GLY 55 H GLY 56 n 57 GLY 56 H THR 57 n 58 THR 57 H ASP 58 n 59 ASP 58 H TYR 59 n 60 TYR 59 H ASN 60 n 61 ASN 60 H ALA 61 n 62 ALA 61 H ASN 62 n 63 ASN 62 H PHE 63 n 64 PHE 63 H LYS 64 n 65 LYS 64 H GLY 65 n 66 GLY 65 H LYS 66 n 67 LYS 66 H ALA 67 n 68 ALA 67 H THR 68 n 69 THR 68 H LEU 69 n 70 LEU 69 H THR 70 n 71 THR 70 H ALA 71 n 72 ALA 71 H ASP 72 n 73 ASP 72 H LYS 73 n 74 LYS 73 H SER 74 n 75 SER 74 H SER 75 n 76 SER 75 H SER 76 n 77 SER 76 H ILE 77 n 78 ILE 77 H VAL 78 n 79 VAL 78 H TYR 79 n 80 TYR 79 H MET 80 n 81 MET 80 H GLN 81 n 82 GLN 81 H LEU 82 n 83 LEU 82 H SER 82 n 84 A SER 82 H SER 82 n 85 B SER 82 H LEU 82 n 86 C LEU 82 H THR 83 n 87 THR 83 H SER 84 n 88 SER 84 H ASP 85 n 89 ASP 85 H ASP 86 n 90 ASP 86 H SER 87 n 91 SER 87 H ALA 88 n 92 ALA 88 H VAL 89 n 93 VAL 89 H TYR 90 n 94 TYR 90 H PHE 91 n 95 PHE 91 H CYS 92 n 96 CYS 92 H ALA 93 n 97 ALA 93 H ARG 94 n 98 ARG 94 H ASP 95 n 99 ASP 95 H PHE 96 n 100 PHE 96 H TYR 97 n 101 TYR 97 H ASP 98 n 102 ASP 98 H TYR 99 n 103 TYR 99 H ASP 100 n 104 ASP 100 H VAL 100 n 105 I VAL 100 H GLY 100 n 106 J GLY 100 H PHE 100 n 107 K PHE 100 H ASP 101 n 108 ASP 101 H TYR 102 n 109 TYR 102 H TRP 103 n 110 TRP 103 H GLY 104 n 111 GLY 104 H GLN 105 n 112 GLN 105 H GLY 106 n 113 GLY 106 H THR 107 n 114 THR 107 H THR 108 n 115 THR 108 H LEU 109 n 116 LEU 109 H THR 110 n 117 THR 110 H VAL 111 n 118 VAL 111 H SER 112 n 119 SER 112 H SER 113 n 120 SER 113 H ALA 114 n 121 ALA 114 H LYS 115 n 122 LYS 115 H THR 116 n 123 THR 116 H THR 117 n 124 THR 117 H ALA 118 n 125 ALA 118 H PRO 119 n 126 PRO 119 H SER 120 n 127 SER 120 H VAL 121 n 128 VAL 121 H TYR 122 n 129 TYR 122 H PRO 123 n 130 PRO 123 H LEU 124 n 131 LEU 124 H ALA 125 n 132 ALA 125 H PRO 126 n 133 PRO 126 H VAL 127 n 134 VAL 127 H CYS 128 n 135 CYS 128 H GLY 129 n 136 GLY 129 H ASP 130 n 137 ASP 130 H THR 133 n 138 THR 133 H THR 134 n 139 THR 134 H GLY 135 n 140 GLY 135 H SER 136 n 141 SER 136 H SER 137 n 142 SER 137 H VAL 138 n 143 VAL 138 H THR 139 n 144 THR 139 H LEU 140 n 145 LEU 140 H GLY 141 n 146 GLY 141 H CYS 142 n 147 CYS 142 H LEU 143 n 148 LEU 143 H VAL 144 n 149 VAL 144 H LYS 145 n 150 LYS 145 H GLY 146 n 151 GLY 146 H TYR 147 n 152 TYR 147 H PHE 148 n 153 PHE 148 H PRO 149 n 154 PRO 149 H GLU 150 n 155 GLU 150 H PRO 151 n 156 PRO 151 H VAL 152 n 157 VAL 152 H THR 153 n 158 THR 153 H LEU 154 n 159 LEU 154 H THR 156 n 160 THR 156 H TRP 157 n 161 TRP 157 H ASN 162 n 162 ASN 162 H SER 163 n 163 SER 163 H GLY 164 n 164 GLY 164 H SER 165 n 165 SER 165 H LEU 166 n 166 LEU 166 H SER 167 n 167 SER 167 H SER 168 n 168 SER 168 H GLY 169 n 169 GLY 169 H VAL 171 n 170 VAL 171 H HIS 172 n 171 HIS 172 H THR 173 n 172 THR 173 H PHE 174 n 173 PHE 174 H PRO 175 n 174 PRO 175 H ALA 176 n 175 ALA 176 H VAL 177 n 176 VAL 177 H LEU 178 n 177 LEU 178 H GLN 179 n 178 GLN 179 H SER 180 n 179 SER 180 H ASP 181 n 180 ASP 181 H LEU 182 n 181 LEU 182 H TYR 183 n 182 TYR 183 H THR 184 n 183 THR 184 H LEU 185 n 184 LEU 185 H SER 186 n 185 SER 186 H SER 187 n 186 SER 187 H SER 188 n 187 SER 188 H VAL 189 n 188 VAL 189 H THR 190 n 189 THR 190 H VAL 191 n 190 VAL 191 H THR 192 n 191 THR 192 H SER 193 n 192 SER 193 H SER 194 n 193 SER 194 H THR 195 n 194 THR 195 H TRP 196 n 195 TRP 196 H PRO 197 n 196 PRO 197 H SER 198 n 197 SER 198 H GLN 203 n 198 GLN 203 H SER 204 n 199 SER 204 H ILE 205 n 200 ILE 205 H THR 206 n 201 THR 206 H CYS 208 n 202 CYS 208 H ASN 209 n 203 ASN 209 H VAL 210 n 204 VAL 210 H ALA 211 n 205 ALA 211 H HIS 212 n 206 HIS 212 H PRO 213 n 207 PRO 213 H ALA 214 n 208 ALA 214 H SER 215 n 209 SER 215 H SER 216 n 210 SER 216 H THR 217 n 211 THR 217 H LYS 218 n 212 LYS 218 H VAL 219 n 213 VAL 219 H ASP 220 n 214 ASP 220 H LYS 221 n 215 LYS 221 H LYS 222 n 216 LYS 222 H ILE 223 n 217 ILE 223 H GLU 226 n 218 GLU 226 H PRO 227 n 219 PRO 227 H ARG 228 n 220 ARG 228 H author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O THR 5 B O THR 5 L N SER 24 B N SER 24 L O ALA 19 B O ALA 19 L N ILE 75 B N ILE 80 L O TYR 70 B O TYR 75 L N SER 67 B N SER 72 L O LEU 11 B O LEU 11 L N LYS 103 B N LYS 108 L O THR 102 B O THR 107 L N TYR 86 B N TYR 91 L O VAL 85 B O VAL 90 L N GLN 38 B N GLN 43 L O TRP 35 B O TRP 40 L N ILE 48 B N ILE 53 L O ALA 130 B O ALA 135 L N LEU 181 B N LEU 186 L O SER 176 B O SER 181 L N SER 162 B N SER 167 L O ASN 145 B O ASN 150 L N THR 197 B N THR 202 L O TYR 192 B O TYR 197 L N PHE 209 B N PHE 214 H O GLN 3 C O GLN 3 H N SER 25 C N SER 25 H O VAL 18 C O VAL 18 H N LEU 82 C N LEU 83 H O ILE 77 C O ILE 78 H N ASP 72 C N ASP 73 H O GLU 10 C O GLU 10 H N THR 108 C N THR 115 H O THR 107 C O THR 114 H N TYR 90 C N TYR 94 H O ALA 93 C O ALA 97 H N GLN 35 C N GLN 35 H O ILE 34 C O ILE 34 H N ILE 51 C N ILE 51 H O VAL 50 C O VAL 50 H N ASP 58 C N ASP 59 H O SER 120 C O SER 127 H N LYS 145 C N LYS 150 H O VAL 138 C O VAL 143 H N VAL 191 C N VAL 190 H O SER 188 C O SER 187 H N HIS 172 C N HIS 171 H O THR 153 C O THR 158 H N ALA 211 C N ALA 205 H O CYS 208 C O CYS 202 H N LYS 221 C N LYS 215 A 1 L SG CYS 213 B SG CYS 219 1 Y 1 P CYS 86 A CYS 1 1 Y 1 P VAL 87 A VAL 2 1 Y 1 P THR 88 A THR 3 1 Y 1 P ILE 89 A ILE 4 1 Y 1 P MET 90 A MET 5 1 Y 1 P THR 91 A THR 6 1 Y 1 P VAL 92 A VAL 7 1 Y 1 P ASN 94 10.58 1 H H ARG PRO 40 41 -112.67 1 L TYR 32 0.068 SIDE CHAIN 1 H TYR 59 0.085 SIDE CHAIN 1 -13.30 1.90 121.10 107.80 P P P O C N ASN ASN PRO 94 94 95 Y 1 9.39 1.50 103.20 112.59 P P P N CD CG PRO PRO PRO 95 95 95 N 1 -12.61 2.10 109.00 96.39 P P P CA CB OG1 THR THR THR 98 98 98 N 1 8.66 1.40 112.40 121.06 P P P CA CB CG2 THR THR THR 98 98 98 N 1 -16.71 2.60 111.60 94.89 P P P CB CG CD LYS LYS LYS 103 103 103 N 1 9.05 1.10 114.20 123.25 L L L CA CB SG CYS CYS CYS 23 23 23 N 1 -14.46 2.20 113.40 98.94 L L L CA CB CG GLN GLN GLN 27 27 27 N 1 14.92 2.30 115.30 130.22 L L L CA CB CG LEU LEU LEU 33 33 33 N 1 5.88 0.80 106.30 112.18 L L L CD1 CG CD2 TRP TRP TRP 35 35 35 N 1 -5.42 0.80 107.30 101.88 L L L CE2 CD2 CG TRP TRP TRP 35 35 35 N 1 -3.74 0.60 121.00 117.26 L L L CB CG CD2 TYR TYR TYR 49 49 49 N 1 19.11 2.20 117.20 136.31 L L L CA C N TYR TYR LYS 49 49 50 Y 1 -13.23 1.60 110.90 97.67 L L L CG1 CB CG2 VAL VAL VAL 51 51 51 N 1 4.35 0.50 120.30 124.65 L L L NE CZ NH1 ARG ARG ARG 61 61 61 N 1 -3.88 0.50 120.30 116.42 L L L NE CZ NH2 ARG ARG ARG 61 61 61 N 1 -13.30 2.20 117.20 103.90 L L L CA C N THR THR VAL 114 114 115 Y 1 17.17 2.30 115.30 132.47 L L L CA CB CG LEU LEU LEU 136 136 136 N 1 7.01 0.80 106.30 113.31 L L L CD1 CG CD2 TRP TRP TRP 148 148 148 N 1 -9.12 1.30 127.00 117.88 L L L CB CG CD1 TRP TRP TRP 148 148 148 N 1 -6.87 0.80 107.30 100.43 L L L CE2 CD2 CG TRP TRP TRP 148 148 148 N 1 6.89 0.90 133.90 140.79 L L L CG CD2 CE3 TRP TRP TRP 148 148 148 N 1 6.48 0.80 106.30 112.78 L L L CD1 CG CD2 TRP TRP TRP 163 163 163 N 1 -6.25 0.80 107.30 101.05 L L L CE2 CD2 CG TRP TRP TRP 163 163 163 N 1 6.13 0.90 133.90 140.03 L L L CG CD2 CE3 TRP TRP TRP 163 163 163 N 1 3.06 0.50 120.30 123.36 L L L NE CZ NH2 ARG ARG ARG 188 188 188 N 1 -4.18 0.60 121.00 116.82 L L L CB CG CD1 TYR TYR TYR 192 192 192 N 1 5.21 0.50 120.30 125.51 L L L NE CZ NH1 ARG ARG ARG 211 211 211 N 1 -3.85 0.50 120.30 116.45 L L L NE CZ NH2 ARG ARG ARG 211 211 211 N 1 14.14 2.20 113.40 127.54 H H H CA CB CG GLN GLN GLN 3 3 3 N 1 -11.22 1.60 110.90 99.68 H H H CG1 CB CG2 VAL VAL VAL 18 18 18 N 1 7.30 0.80 106.30 113.60 H H H CD1 CG CD2 TRP TRP TRP 36 36 36 N 1 -6.15 0.80 107.30 101.15 H H H CE2 CD2 CG TRP TRP TRP 36 36 36 N 1 -11.53 1.80 110.60 99.07 H H H N CA CB GLN GLN GLN 43 43 43 N 1 8.08 0.80 106.30 114.38 H H H CD1 CG CD2 TRP TRP TRP 47 47 47 N 1 -6.31 1.00 110.10 103.79 H H H CG CD1 NE1 TRP TRP TRP 47 47 47 N 1 -6.50 0.80 107.30 100.80 H H H CE2 CD2 CG TRP TRP TRP 47 47 47 N 1 12.06 2.00 116.20 128.26 H H H CA C N ILE ILE GLY 48 48 49 Y 1 -14.14 1.90 111.40 97.26 H H H CB CA C VAL VAL VAL 50 50 50 N 1 -14.38 2.20 113.40 99.02 H H H CA CB CG GLN GLN GLN 81 81 81 N 1 4.63 0.60 121.00 125.63 H H H CB CG CD2 TYR TYR TYR 99 99 99 N 1 -6.78 0.60 121.00 114.22 H H H CB CG CD1 TYR TYR TYR 99 99 99 N 1 6.04 0.80 106.30 112.34 H H H CD1 CG CD2 TRP TRP TRP 103 103 103 N 1 -5.66 0.80 107.30 101.64 H H H CE2 CD2 CG TRP TRP TRP 103 103 103 N 1 -4.08 0.60 121.00 116.92 H H H CB CG CD2 TYR TYR TYR 122 122 122 N 1 -13.29 2.20 117.20 103.91 H H H CA C N GLY GLY SER 135 135 136 Y 1 -21.36 1.80 114.00 92.64 H H H CA CB SG CYS CYS CYS 142 142 142 N 1 -11.10 1.60 110.90 99.80 H H H CG1 CB CG2 VAL VAL VAL 144 144 144 N 1 18.48 2.60 112.10 130.58 H H H N CA C PRO PRO PRO 151 151 151 N 1 10.52 1.40 112.40 122.92 H H H CA CB CG2 THR THR THR 156 156 156 N 1 6.79 0.80 106.30 113.09 H H H CD1 CG CD2 TRP TRP TRP 157 157 157 N 1 -7.81 1.30 127.00 119.19 H H H CB CG CD1 TRP TRP TRP 157 157 157 N 1 -6.57 0.80 107.30 100.73 H H H CE2 CD2 CG TRP TRP TRP 157 157 157 N 1 14.06 2.20 117.20 131.26 H H H CA C N GLN GLN SER 179 179 180 Y 1 -17.75 2.70 111.20 93.45 H H H CA CB OG SER SER SER 186 186 186 N 1 6.32 0.80 106.30 112.62 H H H CD1 CG CD2 TRP TRP TRP 196 196 196 N 1 -5.70 0.80 107.30 101.60 H H H CE2 CD2 CG TRP TRP TRP 196 196 196 N 1 3.23 0.50 120.30 123.53 H H H NE CZ NH1 ARG ARG ARG 228 228 228 N D D 1 L L NE2 CD2 HIS HIS 27 27 -0.076 0.011 1.373 1.297 N 1 L L NE2 CD2 HIS HIS 34 34 -0.090 0.011 1.373 1.283 N 1 H H NE2 CD2 HIS HIS 172 172 -0.080 0.011 1.373 1.293 N 1 H H NE2 CD2 HIS HIS 212 212 -0.082 0.011 1.373 1.291 N 1 L VAL 2 89.46 79.54 1 L LEU 15 -37.50 135.44 E 1 L SER 27 -15.66 -39.98 1 L TYR 32 -101.20 71.48 1 L GLN 42 -55.01 175.94 1 L VAL 51 -161.60 -43.04 1 L LYS 107 -113.80 59.12 1 L ASN 138 32.85 43.45 1 L TYR 140 -176.05 125.94 1 L SER 171 56.58 11.03 1 L ARG 188 -97.07 51.15 1 L HIS 198 -150.39 -124.21 1 L LYS 199 -145.88 -16.68 1 L ARG 211 -27.75 -32.73 1 H PHE 29 -28.67 -46.29 1 H LYS 66 -89.70 -70.43 1 H SER 75 -158.57 53.82 1 H SER 76 21.82 51.15 B 1 H SER 82 48.60 71.13 1 H SER 84 -29.39 -37.81 I 1 H VAL 100 -142.29 33.59 1 H ASP 101 -21.23 -79.60 1 H SER 112 -170.37 147.94 1 H CYS 128 -32.17 -70.77 1 H ASP 130 -135.88 -140.37 1 H THR 134 -156.81 -127.16 1 H SER 136 -140.73 -98.86 1 H LEU 140 -173.79 -179.37 1 H GLN 179 -82.16 -109.84 1 H ASP 181 59.85 -1.24 1 H SER 193 -28.33 -30.13 1 H GLN 203 -125.94 -71.77 1 H SER 204 178.58 132.45 1 H ALA 214 -63.74 10.70 0.23 0.23 3.0 10.0 13342 1 0.0 3.0 10.0 39 3465 0 0 3426 0.018 3.6 model building X-PLOR refinement X-PLOR phasing X-PLOR IGG2A FAB FRAGMENT (C3) COMPLEXED WITH POLIOVIRUS TYPE 1 (MAHONEY STRAIN) FRAGMENT (RESIDUES 86 - 103) THREE-DIMENSIONAL STRUCTURE OF THE COMPLEX BETWEEN THE FAB FRAGMENT OF AN NEUTRALIZING ANTIBODY FOR TYPE 1 POLIOVIRUS AND ITS VIRAL EPITOPE 1 N N 2 N N 3 N N 4 N N 4 N N 4 N N L ALA 80 B ALA 85 HELX_P L ASP 82 B ASP 87 5 1 3 L SER 122 B SER 127 HELX_P L THR 126 B THR 131 1 2 5 L LYS 183 B LYS 188 HELX_P L GLU 187 B GLU 192 1 3 5 H PHE 29 C PHE 29 HELX_P H ASN 31 C ASN 31 5 4 3 H LYS 73 C LYS 74 HELX_P H SER 75 C SER 76 5 5 3 H SER 84 C SER 88 HELX_P H ASP 86 C ASP 90 5 6 3 H ASN 162 C ASN 162 HELX_P H GLY 164 C GLY 164 5 7 3 H PRO 213 C PRO 207 HELX_P H SER 215 C SER 209 5 8 3 disulf 2.391 L CYS 23 B SG CYS 23 1_555 L CYS 88 B SG CYS 93 1_555 disulf 2.644 L CYS 134 B SG CYS 139 1_555 L CYS 194 B SG CYS 199 1_555 disulf 2.409 H CYS 22 C SG CYS 22 1_555 H CYS 92 C SG CYS 96 1_555 disulf 2.586 H CYS 142 C SG CYS 147 1_555 H CYS 208 C SG CYS 202 1_555 COMPLEX (ANTIBODY/PV-1 FRAGMENT) COMPLEX (ANTIBODY-PV-1 FRAGMENT), COMPLEX (ANTIBODY-PV-1 FRAGMENT) complex L THR 7 B THR 7 1 L PRO 8 B PRO 8 0.30 L VAL 94 B VAL 99 1 L PRO 95 B PRO 100 -0.45 L TYR 140 B TYR 145 1 L PRO 141 B PRO 146 -1.23 H PHE 148 C PHE 153 1 H PRO 149 C PRO 154 -1.08 H GLU 150 C GLU 155 1 H PRO 151 C PRO 156 2.98 POLG_POL1M UNP 1 663 P03299 GCAM_MOUSE UNP 3 1 P01865 1FPT PDB 2 1FPT 663 680 1FPT 86 103 P03299 P 1 1 18 1 100 1FPT 114 228 P01865 H 2 121 220 1 213 1FPT 1 213 1FPT A L 3 1 219 4 5 3 3 4 3 4 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 B MET 4 L THR 7 B THR 7 L ALA 19 B ALA 19 L SER 25 B SER 25 L TYR 70 B TYR 75 L ILE 75 B ILE 80 L PHE 62 B PHE 67 L SER 67 B SER 72 L SER 10 B SER 10 L VAL 13 B VAL 13 L THR 102 B THR 107 L ILE 106 B ILE 111 L GLY 84 B GLY 89 L GLN 90 B GLN 95 L LEU 33 B LEU 38 L GLN 38 B GLN 43 L LYS 45 B LYS 50 L ILE 48 B ILE 53 L GLY 129 B GLY 134 L LEU 136 B LEU 141 L MET 175 B MET 180 L THR 182 B THR 187 L VAL 159 B VAL 164 L TRP 163 B TRP 168 L ASN 145 B ASN 150 L ILE 150 B ILE 155 L SER 191 B SER 196 L THR 197 B THR 202 L LYS 207 B LYS 212 L ASN 210 B ASN 215 H GLN 3 C GLN 3 H GLN 6 C GLN 6 H VAL 18 C VAL 18 H SER 25 C SER 25 H ILE 77 C ILE 78 H LEU 82 C LEU 83 H ALA 67 C ALA 68 H ASP 72 C ASP 73 H ALA 9 C ALA 9 H VAL 12 C VAL 12 H THR 107 C THR 114 H VAL 111 C VAL 118 H ALA 88 C ALA 92 H TYR 90 C TYR 94 H ALA 93 C ALA 97 H PHE 96 C PHE 100 H TYR 32 C TYR 32 H GLN 39 C GLN 39 H LEU 45 C LEU 45 H ILE 51 C ILE 51 H THR 57 C THR 58 H TYR 59 C TYR 60 H SER 120 C SER 127 H LEU 124 C LEU 131 H SER 137 C SER 142 H LYS 145 C LYS 150 H LEU 185 C LEU 184 H THR 192 C THR 191 H VAL 171 C VAL 170 H THR 173 C THR 172 H VAL 152 C VAL 157 H TRP 157 C TRP 161 H THR 206 C THR 201 H HIS 212 C HIS 206 H THR 217 C THR 211 H LYS 222 C LYS 216 182 P 63 2 2