0.011455
0.006613
0.000000
0.000000
0.013227
0.000000
0.000000
0.000000
0.009033
0.00000
0.00000
0.00000
Cronin, N.B.
Badasso, M.O.
Tickle, I.J.
Dreyer, T.
Hoover, D.J.
Rosati, R.L.
Humblet, C.C.
Lunney, E.A.
Cooper, J.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
87.300
87.300
110.700
C51 H61 N5 O6
840.060
N-[(5S,9S,10S,13S)-9-hydroxy-5,10-bis(2-methylpropyl)-4,7,12,16-tetraoxo-3,6,11,17-tetraazabicyclo[17.3.1]tricosa-1(23),19,21-trien-13-yl]-3-(naphthalen-1-yl)-2-(naphthalen-1-ylmethyl)propanamide
CP-129,541
peptide-like
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
303
745
760
10.1006/jmbi.2000.4181
11061973
X-ray structures of five renin inhibitors bound to saccharopepsin: exploration of active-site specificity.
2000
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
267
899
915
10.1006/jmbi.1996.0880
The Three-dimensional Structure at 2.4 A Resolution of Glycosylated Proteinase A from the Lysosome-like Vacuole of Saccharomyces cerevisiae
1997
THR A 16 HAS WRONG CHIRALITY AT ATOM CB
SER A 63 HAS WRONG CHIRALITY AT ATOM CA
PHE A 112 HAS WRONG CHIRALITY AT ATOM CA
GLU A 160 HAS WRONG CHIRALITY AT ATOM CA
MAN B 3 HAS WRONG CHIRALITY AT ATOM C1
MAN B 3 HAS WRONG CHIRALITY AT ATOM C3
MAN B 4 HAS WRONG CHIRALITY AT ATOM C1
MAN B 4 HAS WRONG CHIRALITY AT ATOM C3
NAG A 337 HAS WRONG CHIRALITY AT ATOM C1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
IMAGE PLATE
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.01
1.0
PX9.5
SRS
1.01
SYNCHROTRON
SRS BEAMLINE PX9.5
35774.551
SACCHAROPEPSIN
3.4.23.25
1
nat
polymer
910.823
beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
840.060
N-[(5S,9S,10S,13S)-9-hydroxy-5,10-bis(2-methylpropyl)-4,7,12,16-tetraoxo-3,6,11,17-tetraazabicyclo[17.3.1]tricosa-1(23),19,21-trien-13-yl]-3-(naphthalen-1-yl)-2-(naphthalen-1-ylmethyl)propanamide
1
syn
non-polymer
18.015
water
105
nat
water
ASPARTATE PROTEASE, PROTEINASE A
no
no
GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGS
LEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTS
KDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGA
KKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGN
NAVGLAKAI
GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGS
LEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTS
KDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGA
KKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGN
NAVGLAKAI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
sample
4932
Saccharomyces cerevisiae
1
3.40
63.85
VAPOR DIFFUSION, HANGING DROP
5.5
PEG 6000, Sodium Acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_validate_chiral
pdbx_validate_close_contact
struct_asym
struct_conn
struct_ref_seq_dif
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Structure summary
Refinement description
Advisory
Atomic model
Data collection
Database references
Derived calculations
Non-polymer description
Structure summary
1
0
2000-09-20
1
1
2008-04-01
1
2
2011-07-13
1
3
2016-12-14
1
4
2017-10-04
2
0
2020-07-29
_software.name
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.auth_seq_id_2
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
A
NAG
332
n
B
NAG
1
A
NAG
333
n
B
NAG
2
A
MAN
334
n
B
MAN
3
A
MAN
335
n
B
MAN
4
A
BMA
336
n
B
BMA
5
DManpb
b-D-mannopyranose
b-D-Manp
Man
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Yeast Saccharopepsin complexed with CP-108,420.
Yeast Saccharopepsin complexed with PD-133,450.
Yeast Saccharopepsin complexed with CP-72,647.
Yeast Saccharopepsin complexed with CP-81,198.
RCSB
Y
RCSB
2000-09-03
REL
REL
oligosaccharide
DManpb1-2DManpa1-3DManpa1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a1122h-1b_1-5]/1-1-2-2-3/a4-b1_b4-c1_c3-d1_d2-e1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Altp]{[(3+1)][b-D-Manp]{[(2+1)][b-D-Manp]{}}}}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
MAN
NAG
3
2
2
O1
HO4
sing
C1
O3
MAN
MAN
4
3
2
O1
HO3
sing
C1
O2
BMA
MAN
5
4
2
O1
HO2
sing
n
n
n
n
n
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
0GM
N-[(5S,9S,10S,13S)-9-hydroxy-5,10-bis(2-methylpropyl)-4,7,12,16-tetraoxo-3,6,11,17-tetraazabicyclo[17.3.1]tricosa-1(23),19,21-trien-13-yl]-3-(naphthalen-1-yl)-2-(naphthalen-1-ylmethyl)propanamide
HOH
water
CYCLIC PEPTIDO-MIMETIC STATIN INHIBITOR PD-129,541 WITH KI IN NANOMOLAR RANGE. THE AUTHORS CALL THE INHIBITOR CYCLIC STATINE INHIBITOR PD-129,541, BNMA(BIS-[(1-NAPHTHYL)METHYL]ACETIC ACID)-GLU-STATINE-LEU-AMPMA(META-DI(AMINOMETHYL)BENZENE)
NDG
337
3
NAG
NAG
337
A
0GM
338
4
0GM
0GM
338
A
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
505
5
HOH
HOH
505
A
HOH
512
5
HOH
HOH
512
A
HOH
514
5
HOH
HOH
514
A
HOH
515
5
HOH
HOH
515
A
HOH
517
5
HOH
HOH
517
A
HOH
522
5
HOH
HOH
522
A
HOH
523
5
HOH
HOH
523
A
HOH
524
5
HOH
HOH
524
A
HOH
526
5
HOH
HOH
526
A
HOH
529
5
HOH
HOH
529
A
HOH
532
5
HOH
HOH
532
A
HOH
533
5
HOH
HOH
533
A
HOH
534
5
HOH
HOH
534
A
HOH
535
5
HOH
HOH
535
A
HOH
537
5
HOH
HOH
537
A
HOH
538
5
HOH
HOH
538
A
HOH
539
5
HOH
HOH
539
A
HOH
540
5
HOH
HOH
540
A
HOH
543
5
HOH
HOH
543
A
HOH
544
5
HOH
HOH
544
A
HOH
546
5
HOH
HOH
546
A
HOH
547
5
HOH
HOH
547
A
HOH
549
5
HOH
HOH
549
A
HOH
553
5
HOH
HOH
553
A
HOH
555
5
HOH
HOH
555
A
HOH
557
5
HOH
HOH
557
A
HOH
558
5
HOH
HOH
558
A
HOH
559
5
HOH
HOH
559
A
HOH
561
5
HOH
HOH
561
A
HOH
562
5
HOH
HOH
562
A
HOH
566
5
HOH
HOH
566
A
HOH
567
5
HOH
HOH
567
A
HOH
571
5
HOH
HOH
571
A
HOH
572
5
HOH
HOH
572
A
HOH
573
5
HOH
HOH
573
A
HOH
574
5
HOH
HOH
574
A
HOH
576
5
HOH
HOH
576
A
HOH
577
5
HOH
HOH
577
A
HOH
578
5
HOH
HOH
578
A
HOH
579
5
HOH
HOH
579
A
HOH
580
5
HOH
HOH
580
A
HOH
581
5
HOH
HOH
581
A
HOH
582
5
HOH
HOH
582
A
HOH
583
5
HOH
HOH
583
A
HOH
602
5
HOH
HOH
602
A
HOH
605
5
HOH
HOH
605
A
HOH
606
5
HOH
HOH
606
A
HOH
610
5
HOH
HOH
610
A
HOH
616
5
HOH
HOH
616
A
HOH
617
5
HOH
HOH
617
A
HOH
619
5
HOH
HOH
619
A
HOH
621
5
HOH
HOH
621
A
HOH
622
5
HOH
HOH
622
A
HOH
623
5
HOH
HOH
623
A
HOH
626
5
HOH
HOH
626
A
HOH
629
5
HOH
HOH
629
A
HOH
631
5
HOH
HOH
631
A
HOH
632
5
HOH
HOH
632
A
HOH
633
5
HOH
HOH
633
A
HOH
634
5
HOH
HOH
634
A
HOH
639
5
HOH
HOH
639
A
HOH
640
5
HOH
HOH
640
A
HOH
642
5
HOH
HOH
642
A
HOH
644
5
HOH
HOH
644
A
HOH
645
5
HOH
HOH
645
A
HOH
648
5
HOH
HOH
648
A
HOH
650
5
HOH
HOH
650
A
HOH
653
5
HOH
HOH
653
A
HOH
655
5
HOH
HOH
655
A
HOH
656
5
HOH
HOH
656
A
HOH
657
5
HOH
HOH
657
A
HOH
660
5
HOH
HOH
660
A
HOH
661
5
HOH
HOH
661
A
HOH
662
5
HOH
HOH
662
A
HOH
663
5
HOH
HOH
663
A
HOH
664
5
HOH
HOH
664
A
HOH
665
5
HOH
HOH
665
A
HOH
666
5
HOH
HOH
666
A
HOH
667
5
HOH
HOH
667
A
HOH
669
5
HOH
HOH
669
A
HOH
673
5
HOH
HOH
673
A
HOH
675
5
HOH
HOH
675
A
HOH
676
5
HOH
HOH
676
A
HOH
677
5
HOH
HOH
677
A
HOH
679
5
HOH
HOH
679
A
HOH
680
5
HOH
HOH
680
A
HOH
683
5
HOH
HOH
683
A
HOH
686
5
HOH
HOH
686
A
HOH
694
5
HOH
HOH
694
A
HOH
695
5
HOH
HOH
695
A
HOH
696
5
HOH
HOH
696
A
HOH
697
5
HOH
HOH
697
A
HOH
698
5
HOH
HOH
698
A
HOH
699
5
HOH
HOH
699
A
HOH
700
5
HOH
HOH
700
A
HOH
701
5
HOH
HOH
701
A
HOH
702
5
HOH
HOH
702
A
HOH
703
5
HOH
HOH
703
A
HOH
704
5
HOH
HOH
704
A
HOH
706
5
HOH
HOH
706
A
HOH
707
5
HOH
HOH
707
A
HOH
708
5
HOH
HOH
708
A
HOH
709
5
HOH
HOH
709
A
GLY
0
n
1
GLY
0
A
GLY
1
n
2
GLY
1
A
HIS
2
n
3
HIS
2
A
ASP
3
n
4
ASP
3
A
VAL
4
n
5
VAL
4
A
PRO
5
n
6
PRO
5
A
LEU
6
n
7
LEU
6
A
THR
7
n
8
THR
7
A
ASN
8
n
9
ASN
8
A
TYR
9
n
10
TYR
9
A
LEU
10
n
11
LEU
10
A
ASN
11
n
12
ASN
11
A
ALA
12
n
13
ALA
12
A
GLN
13
n
14
GLN
13
A
TYR
14
n
15
TYR
14
A
TYR
15
n
16
TYR
15
A
THR
16
n
17
THR
16
A
ASP
17
n
18
ASP
17
A
ILE
18
n
19
ILE
18
A
THR
19
n
20
THR
19
A
LEU
20
n
21
LEU
20
A
GLY
21
n
22
GLY
21
A
THR
22
n
23
THR
22
A
PRO
23
n
24
PRO
23
A
PRO
24
n
25
PRO
24
A
GLN
25
n
26
GLN
25
A
ASN
26
n
27
ASN
26
A
PHE
27
n
28
PHE
27
A
LYS
28
n
29
LYS
28
A
VAL
29
n
30
VAL
29
A
ILE
30
n
31
ILE
30
A
LEU
31
n
32
LEU
31
A
ASP
32
n
33
ASP
32
A
THR
33
n
34
THR
33
A
GLY
34
n
35
GLY
34
A
SER
35
n
36
SER
35
A
SER
36
n
37
SER
36
A
ASN
37
n
38
ASN
37
A
LEU
38
n
39
LEU
38
A
TRP
39
n
40
TRP
39
A
VAL
40
n
41
VAL
40
A
PRO
41
n
42
PRO
41
A
SER
42
n
43
SER
42
A
ASN
43
n
44
ASN
43
A
GLU
44
n
45
GLU
44
A
CYS
45
n
46
CYS
45
A
GLY
46
n
47
GLY
46
A
SER
47
n
48
SER
47
A
LEU
48
n
49
LEU
48
A
ALA
49
n
50
ALA
49
A
CYS
50
n
51
CYS
50
A
PHE
51
n
52
PHE
51
A
LEU
52
n
53
LEU
52
A
HIS
53
n
54
HIS
53
A
SER
54
n
55
SER
54
A
LYS
55
n
56
LYS
55
A
TYR
56
n
57
TYR
56
A
ASP
57
n
58
ASP
57
A
HIS
58
n
59
HIS
58
A
GLU
59
n
60
GLU
59
A
ALA
60
n
61
ALA
60
A
SER
61
n
62
SER
61
A
SER
62
n
63
SER
62
A
SER
63
n
64
SER
63
A
TYR
64
n
65
TYR
64
A
LYS
65
n
66
LYS
65
A
ALA
66
n
67
ALA
66
A
ASN
67
n
68
ASN
67
A
GLY
68
n
69
GLY
68
A
THR
69
n
70
THR
69
A
GLU
70
n
71
GLU
70
A
PHE
71
n
72
PHE
71
A
ALA
72
n
73
ALA
72
A
ILE
73
n
74
ILE
73
A
GLN
74
n
75
GLN
74
A
TYR
75
n
76
TYR
75
A
GLY
76
n
77
GLY
76
A
THR
77
n
78
THR
77
A
GLY
78
n
79
GLY
78
A
SER
79
n
80
SER
79
A
LEU
80
n
81
LEU
80
A
GLU
81
n
82
GLU
81
A
GLY
82
n
83
GLY
82
A
TYR
83
n
84
TYR
83
A
ILE
84
n
85
ILE
84
A
SER
85
n
86
SER
85
A
GLN
86
n
87
GLN
86
A
ASP
87
n
88
ASP
87
A
THR
88
n
89
THR
88
A
LEU
89
n
90
LEU
89
A
SER
90
n
91
SER
90
A
ILE
91
n
92
ILE
91
A
GLY
92
n
93
GLY
92
A
ASP
93
n
94
ASP
93
A
LEU
94
n
95
LEU
94
A
THR
95
n
96
THR
95
A
ILE
96
n
97
ILE
96
A
PRO
97
n
98
PRO
97
A
LYS
98
n
99
LYS
98
A
GLN
99
n
100
GLN
99
A
ASP
100
n
101
ASP
100
A
PHE
101
n
102
PHE
101
A
ALA
102
n
103
ALA
102
A
GLU
103
n
104
GLU
103
A
ALA
104
n
105
ALA
104
A
THR
105
n
106
THR
105
A
SER
106
n
107
SER
106
A
GLU
107
n
108
GLU
107
A
PRO
108
n
109
PRO
108
A
GLY
109
n
110
GLY
109
A
LEU
110
n
111
LEU
110
A
THR
111
n
112
THR
111
A
PHE
112
n
113
PHE
112
A
ALA
113
n
114
ALA
113
A
PHE
114
n
115
PHE
114
A
GLY
115
n
116
GLY
115
A
LYS
116
n
117
LYS
116
A
PHE
117
n
118
PHE
117
A
ASP
118
n
119
ASP
118
A
GLY
119
n
120
GLY
119
A
ILE
120
n
121
ILE
120
A
LEU
121
n
122
LEU
121
A
GLY
122
n
123
GLY
122
A
LEU
123
n
124
LEU
123
A
GLY
124
n
125
GLY
124
A
TYR
125
n
126
TYR
125
A
ASP
126
n
127
ASP
126
A
THR
127
n
128
THR
127
A
ILE
128
n
129
ILE
128
A
SER
129
n
130
SER
129
A
VAL
130
n
131
VAL
130
A
ASP
131
n
132
ASP
131
A
LYS
132
n
133
LYS
132
A
VAL
133
n
134
VAL
133
A
VAL
134
n
135
VAL
134
A
PRO
135
n
136
PRO
135
A
PRO
136
n
137
PRO
136
A
PHE
137
n
138
PHE
137
A
TYR
138
n
139
TYR
138
A
ASN
139
n
140
ASN
139
A
ALA
140
n
141
ALA
140
A
ILE
141
n
142
ILE
141
A
GLN
142
n
143
GLN
142
A
GLN
143
n
144
GLN
143
A
ASP
144
n
145
ASP
144
A
LEU
145
n
146
LEU
145
A
LEU
146
n
147
LEU
146
A
ASP
147
n
148
ASP
147
A
GLU
148
n
149
GLU
148
A
LYS
149
n
150
LYS
149
A
ARG
150
n
151
ARG
150
A
PHE
151
n
152
PHE
151
A
ALA
152
n
153
ALA
152
A
PHE
153
n
154
PHE
153
A
TYR
154
n
155
TYR
154
A
LEU
155
n
156
LEU
155
A
GLY
156
n
157
GLY
156
A
ASP
157
n
158
ASP
157
A
THR
158
n
159
THR
158
A
SER
159
n
160
SER
159
A
LYS
159
n
161
A
LYS
159
A
ASP
159
n
162
B
ASP
159
A
THR
159
n
163
C
THR
159
A
GLU
160
n
164
GLU
160
A
ASN
161
n
165
ASN
161
A
GLY
162
n
166
GLY
162
A
GLY
163
n
167
GLY
163
A
GLU
164
n
168
GLU
164
A
ALA
165
n
169
ALA
165
A
THR
166
n
170
THR
166
A
PHE
167
n
171
PHE
167
A
GLY
168
n
172
GLY
168
A
GLY
169
n
173
GLY
169
A
ILE
170
n
174
ILE
170
A
ASP
171
n
175
ASP
171
A
GLU
172
n
176
GLU
172
A
SER
173
n
177
SER
173
A
LYS
174
n
178
LYS
174
A
PHE
175
n
179
PHE
175
A
LYS
176
n
180
LYS
176
A
GLY
177
n
181
GLY
177
A
ASP
178
n
182
ASP
178
A
ILE
179
n
183
ILE
179
A
THR
180
n
184
THR
180
A
TRP
181
n
185
TRP
181
A
LEU
182
n
186
LEU
182
A
PRO
183
n
187
PRO
183
A
VAL
184
n
188
VAL
184
A
ARG
185
n
189
ARG
185
A
ARG
186
n
190
ARG
186
A
LYS
187
n
191
LYS
187
A
ALA
188
n
192
ALA
188
A
TYR
189
n
193
TYR
189
A
TRP
190
n
194
TRP
190
A
GLU
191
n
195
GLU
191
A
VAL
192
n
196
VAL
192
A
LYS
193
n
197
LYS
193
A
PHE
194
n
198
PHE
194
A
GLU
195
n
199
GLU
195
A
GLY
196
n
200
GLY
196
A
ILE
197
n
201
ILE
197
A
GLY
198
n
202
GLY
198
A
LEU
199
n
203
LEU
199
A
GLY
200
n
204
GLY
200
A
ASP
201
n
205
ASP
201
A
GLU
202
n
206
GLU
202
A
TYR
203
n
207
TYR
203
A
ALA
204
n
208
ALA
204
A
GLU
205
n
209
GLU
205
A
LEU
206
n
210
LEU
206
A
GLU
207
n
211
GLU
207
A
SER
208
n
212
SER
208
A
HIS
209
n
213
HIS
209
A
GLY
210
n
214
GLY
210
A
ALA
212
n
215
ALA
212
A
ALA
213
n
216
ALA
213
A
ILE
214
n
217
ILE
214
A
ASP
215
n
218
ASP
215
A
THR
216
n
219
THR
216
A
GLY
217
n
220
GLY
217
A
THR
218
n
221
THR
218
A
SER
219
n
222
SER
219
A
LEU
220
n
223
LEU
220
A
ILE
221
n
224
ILE
221
A
THR
222
n
225
THR
222
A
LEU
223
n
226
LEU
223
A
PRO
224
n
227
PRO
224
A
SER
225
n
228
SER
225
A
GLY
226
n
229
GLY
226
A
LEU
227
n
230
LEU
227
A
ALA
228
n
231
ALA
228
A
GLU
229
n
232
GLU
229
A
MET
230
n
233
MET
230
A
ILE
231
n
234
ILE
231
A
ASN
232
n
235
ASN
232
A
ALA
233
n
236
ALA
233
A
GLU
234
n
237
GLU
234
A
ILE
235
n
238
ILE
235
A
GLY
236
n
239
GLY
236
A
ALA
237
n
240
ALA
237
A
LYS
238
n
241
LYS
238
A
LYS
239
n
242
LYS
239
A
GLY
240
n
243
GLY
240
A
TRP
241
n
244
TRP
241
A
THR
242
n
245
THR
242
A
GLY
243
n
246
GLY
243
A
GLN
244
n
247
GLN
244
A
TYR
245
n
248
TYR
245
A
THR
246
n
249
THR
246
A
LEU
247
n
250
LEU
247
A
ASP
248
n
251
ASP
248
A
CYS
249
n
252
CYS
249
A
ASN
250
n
253
ASN
250
A
THR
251
n
254
THR
251
A
ARG
252
n
255
ARG
252
A
ASP
253
n
256
ASP
253
A
ASN
254
n
257
ASN
254
A
LEU
255
n
258
LEU
255
A
PRO
256
n
259
PRO
256
A
ASP
257
n
260
ASP
257
A
LEU
258
n
261
LEU
258
A
ILE
259
n
262
ILE
259
A
PHE
260
n
263
PHE
260
A
ASN
261
n
264
ASN
261
A
PHE
262
n
265
PHE
262
A
ASN
263
n
266
ASN
263
A
GLY
264
n
267
GLY
264
A
TYR
265
n
268
TYR
265
A
ASN
266
n
269
ASN
266
A
PHE
267
n
270
PHE
267
A
THR
268
n
271
THR
268
A
ILE
269
n
272
ILE
269
A
GLY
270
n
273
GLY
270
A
PRO
271
n
274
PRO
271
A
TYR
272
n
275
TYR
272
A
ASP
273
n
276
ASP
273
A
TYR
274
n
277
TYR
274
A
THR
275
n
278
THR
275
A
LEU
276
n
279
LEU
276
A
GLU
277
n
280
GLU
277
A
VAL
278
n
281
VAL
278
A
SER
279
n
282
SER
279
A
GLY
280
n
283
GLY
280
A
SER
281
n
284
SER
281
A
CYS
282
n
285
CYS
282
A
ILE
283
n
286
ILE
283
A
SER
284
n
287
SER
284
A
ALA
285
n
288
ALA
285
A
ILE
286
n
289
ILE
286
A
THR
287
n
290
THR
287
A
PRO
288
n
291
PRO
288
A
MET
289
n
292
MET
289
A
ASP
290
n
293
ASP
290
A
PHE
291
n
294
PHE
291
A
PRO
292
n
295
PRO
292
A
GLU
293
n
296
GLU
293
A
PRO
294
n
297
PRO
294
A
VAL
295
n
298
VAL
295
A
GLY
296
n
299
GLY
296
A
PRO
297
n
300
PRO
297
A
LEU
298
n
301
LEU
298
A
ALA
299
n
302
ALA
299
A
ILE
300
n
303
ILE
300
A
VAL
301
n
304
VAL
301
A
GLY
302
n
305
GLY
302
A
ASP
303
n
306
ASP
303
A
ALA
304
n
307
ALA
304
A
PHE
305
n
308
PHE
305
A
LEU
306
n
309
LEU
306
A
ARG
307
n
310
ARG
307
A
LYS
308
n
311
LYS
308
A
TYR
309
n
312
TYR
309
A
TYR
310
n
313
TYR
310
A
SER
311
n
314
SER
311
A
ILE
312
n
315
ILE
312
A
TYR
313
n
316
TYR
313
A
ASP
314
n
317
ASP
314
A
ILE
315
n
318
ILE
315
A
GLY
316
n
319
GLY
316
A
ASN
317
n
320
ASN
317
A
ASN
318
n
321
ASN
318
A
ALA
319
n
322
ALA
319
A
VAL
320
n
323
VAL
320
A
GLY
321
n
324
GLY
321
A
LEU
322
n
325
LEU
322
A
ALA
323
n
326
ALA
323
A
LYS
324
n
327
LYS
324
A
ALA
325
n
328
ALA
325
A
ILE
326
n
329
ILE
326
A
author_defined_assembly
1
monomeric
A
ASN
266
GLYCOSYLATION SITE
A
ASN
269
ASN
A
ASN
67
GLYCOSYLATION SITE
A
ASN
68
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
4
A
O
VAL
5
A
N
ALA
165
A
N
ALA
169
A
N
THR
166
A
N
THR
170
A
O
ALA
152
A
O
ALA
153
A
N
PHE
153
A
N
PHE
154
A
O
SER
311
A
O
SER
314
A
N
ASP
314
A
N
ASP
317
A
O
ALA
319
A
O
ALA
322
A
O
LYS
324
A
O
LYS
327
A
N
LYS
176
A
N
LYS
180
A
N
TYR
75
A
N
TYR
76
A
O
GLY
78
A
O
GLY
79
A
O
SER
85
A
O
SER
86
A
N
PHE
101
A
N
PHE
102
A
N
ALA
102
A
N
ALA
103
A
O
LEU
38
A
O
LEU
39
A
N
TRP
39
A
N
TRP
40
A
O
ILE
120
A
O
ILE
121
A
N
GLY
119
A
N
GLY
120
A
O
LYS
28
A
O
LYS
29
A
N
LEU
31
A
N
LEU
32
A
O
TYR
14
A
O
TYR
15
A
O
TYR
15
A
O
TYR
16
A
N
THR
7
A
N
THR
8
A
N
TYR
75
A
N
TYR
76
A
O
GLY
78
A
O
GLY
79
A
O
SER
85
A
O
SER
86
A
N
PHE
101
A
N
PHE
102
A
N
ALA
102
A
N
ALA
103
A
O
LEU
38
A
O
LEU
39
A
N
TRP
39
A
N
TRP
40
A
O
ILE
120
A
O
ILE
121
A
N
GLY
119
A
N
GLY
120
A
O
LYS
28
A
O
LYS
29
A
N
LEU
31
A
N
LEU
32
A
O
TYR
14
A
O
TYR
15
A
N
THR
19
A
N
THR
20
A
O
SER
90
A
O
SER
91
A
N
ILE
91
A
N
ILE
92
A
O
LEU
94
A
O
LEU
95
A
O
ILE
269
A
O
ILE
272
A
N
LEU
258
A
N
LEU
261
A
O
ASN
261
A
O
ASN
264
A
N
GLU
195
A
N
GLU
199
A
N
LEU
199
A
N
LEU
203
A
O
GLU
202
A
O
GLU
206
A
O
ILE
269
A
O
ILE
272
A
N
LEU
258
A
N
LEU
261
A
O
ASN
261
A
O
ASN
264
A
N
GLU
195
A
N
GLU
199
A
N
VAL
192
A
N
VAL
196
A
O
ALA
212
A
O
ALA
215
A
O
GLY
210
A
O
GLY
214
A
N
ALA
299
A
N
ALA
302
A
O
ILE
300
A
O
ILE
303
A
N
THR
222
A
N
THR
225
A
O
ILE
221
A
O
ILE
224
A
N
THR
287
A
N
THR
290
A
N
LYS
238
A
N
LYS
241
A
O
THR
246
A
O
THR
249
A
N
LEU
247
A
N
LEU
250
A
O
CYS
282
A
O
CYS
285
A
N
ILE
283
A
N
ILE
286
A
O
LEU
276
A
O
LEU
279
1
A
CB
THR
16
PLANAR
1
A
CA
SER
63
PLANAR
1
A
CA
PHE
112
PLANAR
1
A
CA
GLU
160
PLANAR
1
B
C1
MAN
3
PLANAR
1
B
C3
MAN
3
WRONG HAND
1
B
C1
MAN
4
WRONG HAND
1
B
C3
MAN
4
PLANAR
1
A
C1
NAG
337
WRONG HAND
1
A
A
O
O
HOH
HOH
523
559
0.41
1
B
B
C3
C1
MAN
MAN
3
4
2.03
1
14.92
1.50
110.90
125.82
A
A
A
CA
CB
CG2
VAL
VAL
VAL
4
4
4
N
1
10.36
1.50
119.30
129.66
A
A
A
C
N
CA
PRO
PRO
PRO
23
24
24
Y
1
16.30
2.30
111.70
128.00
A
A
A
CD
CE
NZ
LYS
LYS
LYS
28
28
28
N
1
11.77
1.70
111.00
122.77
A
A
A
CB
CG
CD1
LEU
LEU
LEU
48
48
48
N
1
9.67
1.50
110.50
120.17
A
A
A
N
CA
CB
SER
SER
SER
63
63
63
N
1
16.22
2.50
121.70
137.92
A
A
A
C
N
CA
GLY
SER
SER
78
79
79
Y
1
5.41
0.90
118.30
123.71
A
A
A
CB
CG
OD2
ASP
ASP
ASP
87
87
87
N
1
-10.36
0.90
118.30
107.94
A
A
A
CB
CG
OD1
ASP
ASP
ASP
93
93
93
N
1
-11.57
1.70
111.00
99.43
A
A
A
CB
CG
CD1
LEU
LEU
LEU
94
94
94
N
1
13.73
2.20
113.40
127.13
A
A
A
CA
CB
CG
GLU
GLU
GLU
103
103
103
N
1
15.50
2.30
111.70
127.20
A
A
A
CD
CE
NZ
LYS
LYS
LYS
116
116
116
N
1
-20.37
2.80
113.90
93.53
A
A
A
CB
CG1
CD1
ILE
ILE
ILE
128
128
128
N
1
-8.98
1.10
120.80
111.82
A
A
A
CG
CD2
CE2
PHE
PHE
PHE
153
153
153
N
1
10.46
1.20
120.10
130.56
A
A
A
CZ
CE2
CD2
PHE
PHE
PHE
153
153
153
N
1
14.59
2.30
115.30
129.89
A
A
A
CA
CB
CG
LEU
LEU
LEU
155
155
155
N
1
11.27
1.70
111.00
122.27
A
A
A
CB
CG
CD2
LEU
LEU
LEU
182
182
182
N
1
18.35
2.20
113.40
131.75
A
A
A
CA
CB
CG
ARG
ARG
ARG
186
186
186
N
1
-10.42
1.70
111.00
100.58
A
A
A
CB
CG
CD1
LEU
LEU
LEU
199
199
199
N
1
15.57
2.50
121.70
137.27
A
A
A
C
N
CA
GLY
ASP
ASP
200
201
201
Y
1
35.59
1.90
113.70
149.29
A
A
A
CA
CB
CG
TRP
TRP
TRP
241
241
241
N
1
10.45
1.50
110.90
121.35
A
A
A
CA
CB
CG2
VAL
VAL
VAL
278
278
278
N
1
14.49
2.30
115.30
129.79
A
A
A
CA
CB
CG
LEU
LEU
LEU
298
298
298
N
1
A
A
CE
O
LYS
HOH
149
616
0.79
1_555
3_565
1
A
A
NZ
O
LYS
HOH
149
616
0.89
1_555
3_565
1
A
A
CD
O
LYS
HOH
149
616
1.76
1_555
3_565
1
A
ALA
66
-48.03
151.56
1
A
ASN
67
-145.34
-55.88
1
A
ASP
87
176.40
-174.37
1
A
SER
159
-76.24
-73.01
C
1
A
THR
159
-163.10
-66.00
1
A
GLU
164
-166.12
118.30
1
A
ALA
188
-138.36
-67.35
1
A
LEU
220
-106.42
-162.03
1
A
LYS
239
-66.18
89.87
0.28
0.2
0.2
2.4
12.9
1384
17302
17302
100
random
1
0
0
Engh & Huber
2.4
12.9
105
2770
137
0
2528
2.4
12.9
1FQ5
25823
17302
3
0.07
1
2.7
89.6
data reduction
MOSFLM
data reduction
ROTAVATA
phasing
AMoRE
refinement
RESTRAIN
data scaling
CCP4
(AGROVATA
data scaling
ROTAVATA
SACCHAROPEPSIN (E.C.3.4.23.25)
X-ray structure of a cyclic statine inhibitor PD-129,541 bound to yeast proteinase A
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
SER
47
A
SER
48
HELX_P
A
HIS
53
A
HIS
54
1
1
7
A
LEU
110
A
LEU
111
HELX_P
A
GLY
115
A
GLY
116
1
2
6
A
TYR
125
A
TYR
126
HELX_P
A
SER
129
A
SER
130
5
3
5
A
SER
129
A
SER
130
HELX_P
A
VAL
133
A
VAL
134
5
4
5
A
PRO
135
A
PRO
136
HELX_P
A
GLN
143
A
GLN
144
1
5
9
A
ASP
171
A
ASP
175
HELX_P
A
SER
173
A
SER
177
5
6
3
A
PRO
224
A
PRO
227
HELX_P
A
GLY
236
A
GLY
239
1
7
13
A
ASP
248
A
ASP
251
HELX_P
A
LEU
255
A
LEU
258
5
8
8
A
GLY
302
A
GLY
305
HELX_P
A
ARG
307
A
ARG
310
1
9
6
disulf
1.992
A
CYS
45
A
SG
CYS
46
1_555
A
CYS
50
A
SG
CYS
51
1_555
disulf
2.027
A
CYS
249
A
SG
CYS
252
1_555
A
CYS
282
A
SG
CYS
285
1_555
covale
1.471
one
N-Glycosylation
A
ASN
67
A
ND2
ASN
68
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.459
one
N-Glycosylation
A
ASN
266
A
ND2
ASN
269
1_555
A
NAG
337
C
C1
NAG
1_555
covale
1.449
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.427
both
B
NAG
2
B
O4
NAG
1_555
B
MAN
3
B
C1
MAN
1_555
covale
1.453
both
B
MAN
3
B
O3
MAN
1_555
B
MAN
4
B
C1
MAN
1_555
covale
1.492
both
B
MAN
4
B
O2
MAN
1_555
B
BMA
5
B
C1
BMA
1_555
HYDROLASE/HYDROLASE INHIBITOR
HYDROLASE-HYDROLASE INHIBITOR complex
A
THR
22
A
THR
23
1
A
PRO
23
A
PRO
24
-0.44
A
GLU
293
A
GLU
296
1
A
PRO
294
A
PRO
297
4.23
A
GLY
296
A
GLY
299
1
A
PRO
297
A
PRO
300
-1.62
CARP_YEAST
UNP
1
77
P07267
GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGS
LEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTS
KDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGA
KKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGN
NAVGLAKAI
77
405
1FQ5
0
326
P07267
A
1
1
329
1
LEU
conflict
ILE
315
1FQ5
A
P07267
UNP
394
318
6
8
9
4
7
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
2
A
HIS
3
A
PRO
5
A
PRO
6
A
GLY
163
A
GLY
167
A
PHE
167
A
PHE
171
A
ARG
150
A
ARG
151
A
LEU
155
A
LEU
156
A
TYR
309
A
TYR
312
A
ASP
314
A
ASP
317
A
ALA
319
A
ALA
322
A
ALA
325
A
ALA
328
A
PHE
175
A
PHE
179
A
PRO
183
A
PRO
187
A
LYS
65
A
LYS
66
A
TYR
75
A
TYR
76
A
GLY
78
A
GLY
79
A
GLN
86
A
GLN
87
A
PHE
101
A
PHE
102
A
SER
106
A
SER
107
A
LEU
38
A
LEU
39
A
PRO
41
A
PRO
42
A
GLY
119
A
GLY
120
A
GLY
122
A
GLY
123
A
GLN
25
A
GLN
26
A
ASP
32
A
ASP
33
A
GLN
13
A
GLN
14
A
LEU
20
A
LEU
21
A
THR
7
A
THR
8
A
TYR
9
A
TYR
10
A
LYS
65
A
LYS
66
A
TYR
75
A
TYR
76
A
GLY
78
A
GLY
79
A
GLN
86
A
GLN
87
A
PHE
101
A
PHE
102
A
SER
106
A
SER
107
A
LEU
38
A
LEU
39
A
PRO
41
A
PRO
42
A
GLY
119
A
GLY
120
A
GLY
122
A
GLY
123
A
GLN
25
A
GLN
26
A
ASP
32
A
ASP
33
A
GLN
13
A
GLN
14
A
LEU
20
A
LEU
21
A
LEU
89
A
LEU
90
A
ILE
91
A
ILE
92
A
LEU
94
A
LEU
95
A
ILE
96
A
ILE
97
A
TYR
265
A
TYR
268
A
ILE
269
A
ILE
272
A
LEU
258
A
LEU
261
A
PHE
262
A
PHE
265
A
GLU
191
A
GLU
195
A
LEU
199
A
LEU
203
A
GLU
202
A
GLU
206
A
GLU
205
A
GLU
209
A
TYR
265
A
TYR
268
A
ILE
269
A
ILE
272
A
LEU
258
A
LEU
261
A
PHE
262
A
PHE
265
A
GLU
191
A
GLU
195
A
LEU
199
A
LEU
203
A
GLY
210
A
GLY
214
A
ILE
214
A
ILE
217
A
LEU
298
A
LEU
301
A
VAL
301
A
VAL
304
A
ILE
221
A
ILE
224
A
LEU
223
A
LEU
226
A
ILE
286
A
ILE
289
A
PRO
288
A
PRO
291
A
LYS
238
A
LYS
241
A
LYS
239
A
LYS
242
A
TYR
245
A
TYR
248
A
LEU
247
A
LEU
250
A
CYS
282
A
CYS
285
A
SER
284
A
SER
287
A
THR
275
A
THR
278
A
GLU
277
A
GLU
280
154
P 32 2 1