0.011506 0.006643 0.000000 0.000000 0.013286 0.000000 0.000000 0.000000 0.009072 0.00000 0.00000 0.00000 Cronin, N.B. Badasso, M.O. Tickle, I.J. Dreyer, T. Hoover, D.J. Rosati, R.L. Humblet, C.C. Lunney, E.A. Cooper, J.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 86.910 86.910 110.230 C31 H52 N4 O7 S2 656.897 N-[(1S)-2-{[(2S,3R,4S)-1-cyclohexyl-3,4-dihydroxy-6-methylheptan-2-yl]amino}-1-(ethylsulfanyl)-2-oxoethyl]-Nalpha-(morp holin-4-ylsulfonyl)-L-phenylalaninamide PD-133,450 peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose D-saccharide, beta linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H12 O6 180.156 alpha-L-gulopyranose L-saccharide, alpha linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 303 745 760 10.1006/jmbi.2000.4181 11061973 X-ray structures of five renin inhibitors bound to saccharopepsin: exploration of active-site specificity. 2000 UK J.Mol.Biol. JMOBAK 0070 0022-2836 267 899 915 10.1006/jmbi.1996.0880 The Three-dimensional Structure at 2.4 A Resolution of Glycosylated Proteinase A from the Lysosome-like Vacuole of Saccharomyces cerevisiae 1997 SER A 63 HAS WRONG CHIRALITY AT ATOM CA GLN A 86 HAS WRONG CHIRALITY AT ATOM CA TRP A 241 HAS WRONG CHIRALITY AT ATOM CA GUP B 5 HAS WRONG CHIRALITY AT ATOM C1 NAG A 337 HAS WRONG CHIRALITY AT ATOM C1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 IMAGE PLATE MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.92 1.0 PX9.5 SRS 0.92 SYNCHROTRON SRS BEAMLINE PX9.5 35774.551 SACCHAROPEPSIN 3.4.23.25 1 nat polymer 910.823 alpha-L-gulopyranose-(1-2)-beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 656.897 N-[(1S)-2-{[(2S,3R,4S)-1-cyclohexyl-3,4-dihydroxy-6-methylheptan-2-yl]amino}-1-(ethylsulfanyl)-2-oxoethyl]-Nalpha-(morp holin-4-ylsulfonyl)-L-phenylalaninamide 1 syn non-polymer 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 18.015 water 102 nat water ASPARTATE PROTEASE, PROTEINASE A no no GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGS LEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTS KDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGA KKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGN NAVGLAKAI GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGS LEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTS KDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGA KKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDIGN NAVGLAKAI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces sample 4932 Saccharomyces cerevisiae 1 3.36 63.37 VAPOR DIFFUSION, HANGING DROP 5.5 PEG 6000, Sodium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software chem_comp entity pdbx_entity_nonpoly struct_conn struct_ref_seq_dif atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Refinement description Database references Derived calculations Structure summary Advisory Atomic model Data collection Derived calculations Non-polymer description Structure summary 1 0 2000-09-20 1 1 2008-04-27 1 2 2011-07-13 1 3 2013-02-27 1 4 2017-10-04 1 5 2020-05-27 2 0 2020-07-29 _software.name _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _pdbx_molecule.asym_id _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id A NAG 332 n B NAG 1 A NAG 333 n B NAG 2 A BMA 334 n B BMA 3 A BMA 335 n B BMA 4 A GUP 336 n B GUP 5 DManpb b-D-mannopyranose b-D-Manp Man LGulpa a-L-gulopyranose a-L-Gulp Gul DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Yeast Saccharopepsin complexed with CP-108,420. Yeast Saccharopepsin complexed with PD-129,541. Yeast Saccharopepsin complexed with CP-72,647. Yeast Saccharopepsin complexed with CP-81,198. RCSB Y RCSB 2000-09-03 REL REL oligosaccharide LGulpa1-2DManpb1-3DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1121h-1a_1-5]/1-1-2-2-3/a4-b1_b4-c1_c3-d1_d2-e1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][b-D-Manp]{[(2+1)][a-L-Gulp]{}}}}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 BMA NAG 3 2 2 O1 HO4 sing C1 O3 BMA BMA 4 3 2 O1 HO3 sing C1 O2 GUP BMA 5 4 2 O1 HO2 sing n n n n n 0QF N-[(1S)-2-{[(2S,3R,4S)-1-cyclohexyl-3,4-dihydroxy-6-methylheptan-2-yl]amino}-1-(ethylsulfanyl)-2-oxoethyl]-Nalpha-(morp holin-4-ylsulfonyl)-L-phenylalaninamide NAG 2-acetamido-2-deoxy-beta-D-glucopyranose HOH water DIOL MOIETY SPANNING P1-P1' INHIBITOR SITES (ACDMH - (2S,3R,4S) 2-AMINO-1CYCLOHEXYL-3,4-DIHYDROXY-6-METHYLHEPTANE) Inhibitor N-[(1S)-2-{[(1R,2S,3S)-1-(cyclohexylmethyl)-2,3-dihydroxy-5-methylhexyl]amino}-1-(ethylsulfanyl)-2-oxoethyl]- Nalpha-(morpholin-4-ylsulfonyl)-L-phenylalaninamide Peptide-like 0QF 400 3 0QF 0QF 400 A NDG 337 4 NAG NAG 337 A HOH 501 5 HOH HOH 501 A HOH 502 5 HOH HOH 502 A HOH 505 5 HOH HOH 505 A HOH 510 5 HOH HOH 510 A HOH 512 5 HOH HOH 512 A HOH 514 5 HOH HOH 514 A HOH 515 5 HOH HOH 515 A HOH 517 5 HOH HOH 517 A HOH 519 5 HOH HOH 519 A HOH 520 5 HOH HOH 520 A HOH 521 5 HOH HOH 521 A HOH 522 5 HOH HOH 522 A HOH 524 5 HOH HOH 524 A HOH 525 5 HOH HOH 525 A HOH 526 5 HOH HOH 526 A HOH 529 5 HOH HOH 529 A HOH 532 5 HOH HOH 532 A HOH 533 5 HOH HOH 533 A HOH 534 5 HOH HOH 534 A HOH 535 5 HOH HOH 535 A HOH 537 5 HOH HOH 537 A HOH 538 5 HOH HOH 538 A HOH 539 5 HOH HOH 539 A HOH 540 5 HOH HOH 540 A HOH 543 5 HOH HOH 543 A HOH 546 5 HOH HOH 546 A HOH 549 5 HOH HOH 549 A HOH 553 5 HOH HOH 553 A HOH 555 5 HOH HOH 555 A HOH 558 5 HOH HOH 558 A HOH 559 5 HOH HOH 559 A HOH 562 5 HOH HOH 562 A HOH 566 5 HOH HOH 566 A HOH 567 5 HOH HOH 567 A HOH 571 5 HOH HOH 571 A HOH 572 5 HOH HOH 572 A HOH 573 5 HOH HOH 573 A HOH 574 5 HOH HOH 574 A HOH 576 5 HOH HOH 576 A HOH 577 5 HOH HOH 577 A HOH 578 5 HOH HOH 578 A HOH 579 5 HOH HOH 579 A HOH 580 5 HOH HOH 580 A HOH 581 5 HOH HOH 581 A HOH 582 5 HOH HOH 582 A HOH 583 5 HOH HOH 583 A HOH 602 5 HOH HOH 602 A HOH 605 5 HOH HOH 605 A HOH 606 5 HOH HOH 606 A HOH 616 5 HOH HOH 616 A HOH 617 5 HOH HOH 617 A HOH 619 5 HOH HOH 619 A HOH 621 5 HOH HOH 621 A HOH 622 5 HOH HOH 622 A HOH 626 5 HOH HOH 626 A HOH 629 5 HOH HOH 629 A HOH 631 5 HOH HOH 631 A HOH 632 5 HOH HOH 632 A HOH 634 5 HOH HOH 634 A HOH 639 5 HOH HOH 639 A HOH 640 5 HOH HOH 640 A HOH 642 5 HOH HOH 642 A HOH 644 5 HOH HOH 644 A HOH 645 5 HOH HOH 645 A HOH 648 5 HOH HOH 648 A HOH 650 5 HOH HOH 650 A HOH 653 5 HOH HOH 653 A HOH 655 5 HOH HOH 655 A HOH 656 5 HOH HOH 656 A HOH 657 5 HOH HOH 657 A HOH 660 5 HOH HOH 660 A HOH 661 5 HOH HOH 661 A HOH 662 5 HOH HOH 662 A HOH 663 5 HOH HOH 663 A HOH 664 5 HOH HOH 664 A HOH 665 5 HOH HOH 665 A HOH 666 5 HOH HOH 666 A HOH 667 5 HOH HOH 667 A HOH 669 5 HOH HOH 669 A HOH 673 5 HOH HOH 673 A HOH 675 5 HOH HOH 675 A HOH 676 5 HOH HOH 676 A HOH 677 5 HOH HOH 677 A HOH 679 5 HOH HOH 679 A HOH 680 5 HOH HOH 680 A HOH 683 5 HOH HOH 683 A HOH 686 5 HOH HOH 686 A HOH 694 5 HOH HOH 694 A HOH 696 5 HOH HOH 696 A HOH 697 5 HOH HOH 697 A HOH 698 5 HOH HOH 698 A HOH 699 5 HOH HOH 699 A HOH 700 5 HOH HOH 700 A HOH 701 5 HOH HOH 701 A HOH 702 5 HOH HOH 702 A HOH 703 5 HOH HOH 703 A HOH 704 5 HOH HOH 704 A HOH 705 5 HOH HOH 705 A HOH 706 5 HOH HOH 706 A HOH 707 5 HOH HOH 707 A HOH 708 5 HOH HOH 708 A HOH 709 5 HOH HOH 709 A GLY 0 n 1 GLY 0 A GLY 1 n 2 GLY 1 A HIS 2 n 3 HIS 2 A ASP 3 n 4 ASP 3 A VAL 4 n 5 VAL 4 A PRO 5 n 6 PRO 5 A LEU 6 n 7 LEU 6 A THR 7 n 8 THR 7 A ASN 8 n 9 ASN 8 A TYR 9 n 10 TYR 9 A LEU 10 n 11 LEU 10 A ASN 11 n 12 ASN 11 A ALA 12 n 13 ALA 12 A GLN 13 n 14 GLN 13 A TYR 14 n 15 TYR 14 A TYR 15 n 16 TYR 15 A THR 16 n 17 THR 16 A ASP 17 n 18 ASP 17 A ILE 18 n 19 ILE 18 A THR 19 n 20 THR 19 A LEU 20 n 21 LEU 20 A GLY 21 n 22 GLY 21 A THR 22 n 23 THR 22 A PRO 23 n 24 PRO 23 A PRO 24 n 25 PRO 24 A GLN 25 n 26 GLN 25 A ASN 26 n 27 ASN 26 A PHE 27 n 28 PHE 27 A LYS 28 n 29 LYS 28 A VAL 29 n 30 VAL 29 A ILE 30 n 31 ILE 30 A LEU 31 n 32 LEU 31 A ASP 32 n 33 ASP 32 A THR 33 n 34 THR 33 A GLY 34 n 35 GLY 34 A SER 35 n 36 SER 35 A SER 36 n 37 SER 36 A ASN 37 n 38 ASN 37 A LEU 38 n 39 LEU 38 A TRP 39 n 40 TRP 39 A VAL 40 n 41 VAL 40 A PRO 41 n 42 PRO 41 A SER 42 n 43 SER 42 A ASN 43 n 44 ASN 43 A GLU 44 n 45 GLU 44 A CYS 45 n 46 CYS 45 A GLY 46 n 47 GLY 46 A SER 47 n 48 SER 47 A LEU 48 n 49 LEU 48 A ALA 49 n 50 ALA 49 A CYS 50 n 51 CYS 50 A PHE 51 n 52 PHE 51 A LEU 52 n 53 LEU 52 A HIS 53 n 54 HIS 53 A SER 54 n 55 SER 54 A LYS 55 n 56 LYS 55 A TYR 56 n 57 TYR 56 A ASP 57 n 58 ASP 57 A HIS 58 n 59 HIS 58 A GLU 59 n 60 GLU 59 A ALA 60 n 61 ALA 60 A SER 61 n 62 SER 61 A SER 62 n 63 SER 62 A SER 63 n 64 SER 63 A TYR 64 n 65 TYR 64 A LYS 65 n 66 LYS 65 A ALA 66 n 67 ALA 66 A ASN 67 n 68 ASN 67 A GLY 68 n 69 GLY 68 A THR 69 n 70 THR 69 A GLU 70 n 71 GLU 70 A PHE 71 n 72 PHE 71 A ALA 72 n 73 ALA 72 A ILE 73 n 74 ILE 73 A GLN 74 n 75 GLN 74 A TYR 75 n 76 TYR 75 A GLY 76 n 77 GLY 76 A THR 77 n 78 THR 77 A GLY 78 n 79 GLY 78 A SER 79 n 80 SER 79 A LEU 80 n 81 LEU 80 A GLU 81 n 82 GLU 81 A GLY 82 n 83 GLY 82 A TYR 83 n 84 TYR 83 A ILE 84 n 85 ILE 84 A SER 85 n 86 SER 85 A GLN 86 n 87 GLN 86 A ASP 87 n 88 ASP 87 A THR 88 n 89 THR 88 A LEU 89 n 90 LEU 89 A SER 90 n 91 SER 90 A ILE 91 n 92 ILE 91 A GLY 92 n 93 GLY 92 A ASP 93 n 94 ASP 93 A LEU 94 n 95 LEU 94 A THR 95 n 96 THR 95 A ILE 96 n 97 ILE 96 A PRO 97 n 98 PRO 97 A LYS 98 n 99 LYS 98 A GLN 99 n 100 GLN 99 A ASP 100 n 101 ASP 100 A PHE 101 n 102 PHE 101 A ALA 102 n 103 ALA 102 A GLU 103 n 104 GLU 103 A ALA 104 n 105 ALA 104 A THR 105 n 106 THR 105 A SER 106 n 107 SER 106 A GLU 107 n 108 GLU 107 A PRO 108 n 109 PRO 108 A GLY 109 n 110 GLY 109 A LEU 110 n 111 LEU 110 A THR 111 n 112 THR 111 A PHE 112 n 113 PHE 112 A ALA 113 n 114 ALA 113 A PHE 114 n 115 PHE 114 A GLY 115 n 116 GLY 115 A LYS 116 n 117 LYS 116 A PHE 117 n 118 PHE 117 A ASP 118 n 119 ASP 118 A GLY 119 n 120 GLY 119 A ILE 120 n 121 ILE 120 A LEU 121 n 122 LEU 121 A GLY 122 n 123 GLY 122 A LEU 123 n 124 LEU 123 A GLY 124 n 125 GLY 124 A TYR 125 n 126 TYR 125 A ASP 126 n 127 ASP 126 A THR 127 n 128 THR 127 A ILE 128 n 129 ILE 128 A SER 129 n 130 SER 129 A VAL 130 n 131 VAL 130 A ASP 131 n 132 ASP 131 A LYS 132 n 133 LYS 132 A VAL 133 n 134 VAL 133 A VAL 134 n 135 VAL 134 A PRO 135 n 136 PRO 135 A PRO 136 n 137 PRO 136 A PHE 137 n 138 PHE 137 A TYR 138 n 139 TYR 138 A ASN 139 n 140 ASN 139 A ALA 140 n 141 ALA 140 A ILE 141 n 142 ILE 141 A GLN 142 n 143 GLN 142 A GLN 143 n 144 GLN 143 A ASP 144 n 145 ASP 144 A LEU 145 n 146 LEU 145 A LEU 146 n 147 LEU 146 A ASP 147 n 148 ASP 147 A GLU 148 n 149 GLU 148 A LYS 149 n 150 LYS 149 A ARG 150 n 151 ARG 150 A PHE 151 n 152 PHE 151 A ALA 152 n 153 ALA 152 A PHE 153 n 154 PHE 153 A TYR 154 n 155 TYR 154 A LEU 155 n 156 LEU 155 A GLY 156 n 157 GLY 156 A ASP 157 n 158 ASP 157 A THR 158 n 159 THR 158 A SER 159 n 160 SER 159 A LYS 159 n 161 A LYS 159 A ASP 159 n 162 B ASP 159 A THR 159 n 163 C THR 159 A GLU 160 n 164 GLU 160 A ASN 161 n 165 ASN 161 A GLY 162 n 166 GLY 162 A GLY 163 n 167 GLY 163 A GLU 164 n 168 GLU 164 A ALA 165 n 169 ALA 165 A THR 166 n 170 THR 166 A PHE 167 n 171 PHE 167 A GLY 168 n 172 GLY 168 A GLY 169 n 173 GLY 169 A ILE 170 n 174 ILE 170 A ASP 171 n 175 ASP 171 A GLU 172 n 176 GLU 172 A SER 173 n 177 SER 173 A LYS 174 n 178 LYS 174 A PHE 175 n 179 PHE 175 A LYS 176 n 180 LYS 176 A GLY 177 n 181 GLY 177 A ASP 178 n 182 ASP 178 A ILE 179 n 183 ILE 179 A THR 180 n 184 THR 180 A TRP 181 n 185 TRP 181 A LEU 182 n 186 LEU 182 A PRO 183 n 187 PRO 183 A VAL 184 n 188 VAL 184 A ARG 185 n 189 ARG 185 A ARG 186 n 190 ARG 186 A LYS 187 n 191 LYS 187 A ALA 188 n 192 ALA 188 A TYR 189 n 193 TYR 189 A TRP 190 n 194 TRP 190 A GLU 191 n 195 GLU 191 A VAL 192 n 196 VAL 192 A LYS 193 n 197 LYS 193 A PHE 194 n 198 PHE 194 A GLU 195 n 199 GLU 195 A GLY 196 n 200 GLY 196 A ILE 197 n 201 ILE 197 A GLY 198 n 202 GLY 198 A LEU 199 n 203 LEU 199 A GLY 200 n 204 GLY 200 A ASP 201 n 205 ASP 201 A GLU 202 n 206 GLU 202 A TYR 203 n 207 TYR 203 A ALA 204 n 208 ALA 204 A GLU 205 n 209 GLU 205 A LEU 206 n 210 LEU 206 A GLU 207 n 211 GLU 207 A SER 208 n 212 SER 208 A HIS 209 n 213 HIS 209 A GLY 210 n 214 GLY 210 A ALA 212 n 215 ALA 212 A ALA 213 n 216 ALA 213 A ILE 214 n 217 ILE 214 A ASP 215 n 218 ASP 215 A THR 216 n 219 THR 216 A GLY 217 n 220 GLY 217 A THR 218 n 221 THR 218 A SER 219 n 222 SER 219 A LEU 220 n 223 LEU 220 A ILE 221 n 224 ILE 221 A THR 222 n 225 THR 222 A LEU 223 n 226 LEU 223 A PRO 224 n 227 PRO 224 A SER 225 n 228 SER 225 A GLY 226 n 229 GLY 226 A LEU 227 n 230 LEU 227 A ALA 228 n 231 ALA 228 A GLU 229 n 232 GLU 229 A MET 230 n 233 MET 230 A ILE 231 n 234 ILE 231 A ASN 232 n 235 ASN 232 A ALA 233 n 236 ALA 233 A GLU 234 n 237 GLU 234 A ILE 235 n 238 ILE 235 A GLY 236 n 239 GLY 236 A ALA 237 n 240 ALA 237 A LYS 238 n 241 LYS 238 A LYS 239 n 242 LYS 239 A GLY 240 n 243 GLY 240 A TRP 241 n 244 TRP 241 A THR 242 n 245 THR 242 A GLY 243 n 246 GLY 243 A GLN 244 n 247 GLN 244 A TYR 245 n 248 TYR 245 A THR 246 n 249 THR 246 A LEU 247 n 250 LEU 247 A ASP 248 n 251 ASP 248 A CYS 249 n 252 CYS 249 A ASN 250 n 253 ASN 250 A THR 251 n 254 THR 251 A ARG 252 n 255 ARG 252 A ASP 253 n 256 ASP 253 A ASN 254 n 257 ASN 254 A LEU 255 n 258 LEU 255 A PRO 256 n 259 PRO 256 A ASP 257 n 260 ASP 257 A LEU 258 n 261 LEU 258 A ILE 259 n 262 ILE 259 A PHE 260 n 263 PHE 260 A ASN 261 n 264 ASN 261 A PHE 262 n 265 PHE 262 A ASN 263 n 266 ASN 263 A GLY 264 n 267 GLY 264 A TYR 265 n 268 TYR 265 A ASN 266 n 269 ASN 266 A PHE 267 n 270 PHE 267 A THR 268 n 271 THR 268 A ILE 269 n 272 ILE 269 A GLY 270 n 273 GLY 270 A PRO 271 n 274 PRO 271 A TYR 272 n 275 TYR 272 A ASP 273 n 276 ASP 273 A TYR 274 n 277 TYR 274 A THR 275 n 278 THR 275 A LEU 276 n 279 LEU 276 A GLU 277 n 280 GLU 277 A VAL 278 n 281 VAL 278 A SER 279 n 282 SER 279 A GLY 280 n 283 GLY 280 A SER 281 n 284 SER 281 A CYS 282 n 285 CYS 282 A ILE 283 n 286 ILE 283 A SER 284 n 287 SER 284 A ALA 285 n 288 ALA 285 A ILE 286 n 289 ILE 286 A THR 287 n 290 THR 287 A PRO 288 n 291 PRO 288 A MET 289 n 292 MET 289 A ASP 290 n 293 ASP 290 A PHE 291 n 294 PHE 291 A PRO 292 n 295 PRO 292 A GLU 293 n 296 GLU 293 A PRO 294 n 297 PRO 294 A VAL 295 n 298 VAL 295 A GLY 296 n 299 GLY 296 A PRO 297 n 300 PRO 297 A LEU 298 n 301 LEU 298 A ALA 299 n 302 ALA 299 A ILE 300 n 303 ILE 300 A VAL 301 n 304 VAL 301 A GLY 302 n 305 GLY 302 A ASP 303 n 306 ASP 303 A ALA 304 n 307 ALA 304 A PHE 305 n 308 PHE 305 A LEU 306 n 309 LEU 306 A ARG 307 n 310 ARG 307 A LYS 308 n 311 LYS 308 A TYR 309 n 312 TYR 309 A TYR 310 n 313 TYR 310 A SER 311 n 314 SER 311 A ILE 312 n 315 ILE 312 A TYR 313 n 316 TYR 313 A ASP 314 n 317 ASP 314 A ILE 315 n 318 ILE 315 A GLY 316 n 319 GLY 316 A ASN 317 n 320 ASN 317 A ASN 318 n 321 ASN 318 A ALA 319 n 322 ALA 319 A VAL 320 n 323 VAL 320 A GLY 321 n 324 GLY 321 A LEU 322 n 325 LEU 322 A ALA 323 n 326 ALA 323 A LYS 324 n 327 LYS 324 A ALA 325 n 328 ALA 325 A ILE 326 n 329 ILE 326 A author_defined_assembly 1 monomeric A ASN 67 GLYCOSYLATION SITE A ASN 68 ASN A ASN 266 GLYCOSYLATION SITE A ASN 269 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N HIS 2 A N HIS 3 A O PHE 167 A O PHE 171 A O THR 166 A O THR 170 A N ALA 152 A N ALA 153 A N PHE 153 A N PHE 154 A O SER 311 A O SER 314 A N ILE 312 A N ILE 315 A O GLY 321 A O GLY 324 A O VAL 320 A O VAL 323 A N LEU 182 A N LEU 186 A N TYR 9 A N TYR 10 A O GLN 13 A O GLN 14 A N LEU 20 A N LEU 21 A O GLN 25 A O GLN 26 A N ILE 30 A N ILE 31 A O LEU 121 A O LEU 122 A O ILE 120 A O ILE 121 A N TRP 39 A N TRP 40 A N VAL 40 A N VAL 41 A O ALA 104 A O ALA 105 A O GLU 103 A O GLU 104 A N TYR 83 A N TYR 84 A O GLY 82 A O GLY 83 A N PHE 71 A N PHE 72 A N TYR 9 A N TYR 10 A O GLN 13 A O GLN 14 A N THR 19 A N THR 20 A O SER 90 A O SER 91 A N LEU 89 A N LEU 90 A O ILE 96 A O ILE 97 A O ALA 204 A O ALA 208 A N ILE 197 A N ILE 201 A N GLY 196 A N GLY 200 A O ASN 261 A O ASN 264 A N LEU 258 A N LEU 261 A O ILE 269 A O ILE 272 A O ALA 204 A O ALA 208 A N ILE 197 A N ILE 201 A N VAL 192 A N VAL 196 A O ALA 212 A O ALA 215 A N GLY 210 A N GLY 214 A O ALA 299 A O ALA 302 A O ILE 300 A O ILE 303 A N THR 222 A N THR 225 A N LEU 223 A N LEU 226 A O THR 287 A O THR 290 A N LYS 238 A N LYS 241 A O THR 246 A O THR 249 A N LEU 247 A N LEU 250 A O CYS 282 A O CYS 285 A O SER 281 A O SER 284 A N VAL 278 A N VAL 281 1 A CA SER 63 PLANAR 1 A CA GLN 86 WRONG HAND 1 A CA TRP 241 PLANAR 1 B C1 GUP 5 PLANAR 1 A C1 NAG 337 WRONG HAND 1 A A O O HOH HOH 621 703 1.63 1 11.55 1.50 110.90 122.45 A A A CA CB CG1 VAL VAL VAL 4 4 4 N 1 6.62 1.10 114.20 120.82 A A A CA CB SG CYS CYS CYS 45 45 45 N 1 16.19 2.30 115.30 131.49 A A A CA CB CG LEU LEU LEU 48 48 48 N 1 9.56 1.50 110.50 120.06 A A A N CA CB SER SER SER 63 63 63 N 1 -6.71 0.90 118.30 111.59 A A A CB CG OD1 ASP ASP ASP 93 93 93 N A A A 1 -14.32 2.30 111.70 97.38 A A A CD CE NZ LYS LYS LYS 159 159 159 N 1 14.87 2.20 113.40 128.27 A A A CA CB CG ARG ARG ARG 186 186 186 N 1 11.52 1.70 111.00 122.52 A A A CB CG CD2 LEU LEU LEU 220 220 220 N 1 11.86 1.80 110.60 122.46 A A A N CA CB TRP TRP TRP 241 241 241 N 1 24.40 1.90 113.70 138.10 A A A CA CB CG TRP TRP TRP 241 241 241 N 1 9.07 1.50 110.90 119.97 A A A CA CB CG2 VAL VAL VAL 278 278 278 N 1 10.76 1.60 110.90 121.66 A A A CG1 CB CG2 VAL VAL VAL 295 295 295 N 1 9.11 1.50 110.90 120.01 A A A CA CB CG1 VAL VAL VAL 295 295 295 N 1 A GLU 59 -53.95 -7.55 1 A ASN 67 -138.62 -44.91 1 A ILE 84 -58.42 172.43 1 A ASP 87 175.95 179.85 1 A THR 127 -46.71 -14.82 1 A ASP 144 35.45 47.45 1 A ASN 161 58.27 72.30 1 A ALA 188 -153.08 -75.05 1 A LEU 199 -170.63 124.69 1 A ILE 214 -69.59 99.19 1 A LEU 220 -92.64 -156.41 1 A LYS 239 -64.41 98.92 1 A TRP 241 -28.63 -47.65 0.27 0.18 0.18 2.7 15.6 1026 12831 12831 100 random 1 0 0 Engh & Huber 2.7 15.6 102 2749 119 0 2528 2.7 15.6 1FQ6 19352 12831 3 0.15 1 5.0 93.7 data reduction MOSFLM data reduction ROTAVATA phasing AMoRE refinement RESTRAIN data scaling CCP4 (AGROVATA data scaling ROTAVATA SACCHAROPEPSIN (E.C.3.4.23.25) X-RAY STRUCTURE OF GLYCOL INHIBITOR PD-133,450 BOUND TO SACCHAROPEPSIN 1 N N 2 N N 3 N N 4 N N 5 N N A SER 47 A SER 48 HELX_P A HIS 53 A HIS 54 1 1 7 A ASP 57 A ASP 58 HELX_P A SER 61 A SER 62 5 2 5 A THR 111 A THR 112 HELX_P A GLY 115 A GLY 116 5 3 5 A TYR 125 A TYR 126 HELX_P A VAL 133 A VAL 134 5 4 9 A PRO 135 A PRO 136 HELX_P A GLN 142 A GLN 143 1 5 8 A PRO 224 A PRO 227 HELX_P A GLY 236 A GLY 239 1 6 13 A ASP 248 A ASP 251 HELX_P A LEU 255 A LEU 258 5 7 8 A GLY 302 A GLY 305 HELX_P A ARG 307 A ARG 310 1 8 6 disulf 2.016 A CYS 45 A SG CYS 46 1_555 A CYS 50 A SG CYS 51 1_555 disulf 2.010 A CYS 249 A SG CYS 252 1_555 A CYS 282 A SG CYS 285 1_555 covale 1.467 one N-Glycosylation A ASN 67 A ND2 ASN 68 1_555 B NAG 1 B C1 NAG 1_555 covale 1.455 one N-Glycosylation A ASN 266 A ND2 ASN 269 1_555 A NAG 337 D C1 NAG 1_555 covale 1.466 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.459 both B NAG 2 B O4 NAG 1_555 B BMA 3 B C1 BMA 1_555 covale 1.456 both B BMA 3 B O3 BMA 1_555 B BMA 4 B C1 BMA 1_555 covale 1.469 both B BMA 4 B O2 BMA 1_555 B GUP 5 B C1 GUP 1_555 HYDROLASE/HYDROLASE INHIBITOR HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex A THR 22 A THR 23 1 A PRO 23 A PRO 24 -2.80 A GLU 293 A GLU 296 1 A PRO 294 A PRO 297 4.75 A GLY 296 A GLY 299 1 A PRO 297 A PRO 300 -4.04 CARP_YEAST UNP 1 77 P07267 GGHDVPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTGS LEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTS KDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGA KKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGN NAVGLAKAI 77 405 1FQ6 0 326 P07267 A 1 1 329 1 LEU conflict ILE 315 1FQ6 A P07267 UNP 394 318 6 8 4 4 6 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A HIS 2 A HIS 3 A PRO 5 A PRO 6 A GLY 163 A GLY 167 A PHE 167 A PHE 171 A ARG 150 A ARG 151 A LEU 155 A LEU 156 A TYR 309 A TYR 312 A ASP 314 A ASP 317 A ALA 319 A ALA 322 A ALA 325 A ALA 328 A PHE 175 A PHE 179 A PRO 183 A PRO 187 A THR 7 A THR 8 A TYR 9 A TYR 10 A GLN 13 A GLN 14 A LEU 20 A LEU 21 A GLN 25 A GLN 26 A ASP 32 A ASP 33 A GLY 119 A GLY 120 A GLY 122 A GLY 123 A LEU 38 A LEU 39 A PRO 41 A PRO 42 A PHE 101 A PHE 102 A SER 106 A SER 107 A SER 79 A SER 80 A SER 85 A SER 86 A GLU 70 A GLU 71 A GLN 74 A GLN 75 A THR 7 A THR 8 A TYR 9 A TYR 10 A GLN 13 A GLN 14 A LEU 20 A LEU 21 A LEU 89 A LEU 90 A ILE 91 A ILE 92 A LEU 94 A LEU 95 A ILE 96 A ILE 97 A GLU 202 A GLU 206 A GLU 205 A GLU 209 A GLU 191 A GLU 195 A LEU 199 A LEU 203 A LEU 258 A LEU 261 A PHE 262 A PHE 265 A TYR 265 A TYR 268 A ILE 269 A ILE 272 A GLU 202 A GLU 206 A GLU 205 A GLU 209 A GLU 191 A GLU 195 A LEU 199 A LEU 203 A GLY 210 A GLY 214 A ILE 214 A ILE 217 A LEU 298 A LEU 301 A VAL 301 A VAL 304 A ILE 221 A ILE 224 A LEU 223 A LEU 226 A ILE 286 A ILE 289 A PRO 288 A PRO 291 A LYS 238 A LYS 241 A LYS 239 A LYS 242 A TYR 245 A TYR 248 A LEU 247 A LEU 250 A SER 281 A SER 284 A SER 284 A SER 287 A THR 275 A THR 278 A VAL 278 A VAL 281 154 P 32 2 1