1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Borden, K.L.B.
Freemont, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
EMBO J.
EMJODG
0897
0261-4189
14
5947
5956
8846787
Novel topology of a zinc-binding domain from a protein involved in regulating early Xenopus development.
1995
US
Ann.N.Y.Acad.Sci.
ANYAA9
0332
0077-8923
684
174
The Ring Finger. A Novel Protein Sequence Motif Related to the Zinc Finger
1993
US
Dev.Biol.
0012-1606
148
107
The Cloning and Characterization of a Maternally Expressed Novel Zinc Finger Nuclear Phosphoprotein (Xnf7) in Xenopus Laevis
1991
10.2210/pdb1fre/pdb
pdb_00001fre
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4881.637
NUCLEAR FACTOR XNF7
BBOX
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
RPLEKCSEHDERLKLYCKDDGTLSCVICRDSLKHASHNFLPI
RPLEKCSEHDERLKLYCKDDGTLSCVICRDSLKHASHNFLPI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
African clawed frog
Xenopus
sample
8355
Xenopus laevis
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1997-02-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-01-31
REL
REL
ZN
ZINC ION
1
7.5
303
K
ZN
43
2
ZN
ZN
43
A
n
1
1
A
n
2
2
A
n
3
3
A
GLU
4
n
4
GLU
4
A
LYS
5
n
5
LYS
5
A
CYS
6
n
6
CYS
6
A
SER
7
n
7
SER
7
A
GLU
8
n
8
GLU
8
A
HIS
9
n
9
HIS
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
ARG
12
n
12
ARG
12
A
LEU
13
n
13
LEU
13
A
LYS
14
n
14
LYS
14
A
LEU
15
n
15
LEU
15
A
TYR
16
n
16
TYR
16
A
CYS
17
n
17
CYS
17
A
LYS
18
n
18
LYS
18
A
ASP
19
n
19
ASP
19
A
ASP
20
n
20
ASP
20
A
GLY
21
n
21
GLY
21
A
THR
22
n
22
THR
22
A
LEU
23
n
23
LEU
23
A
SER
24
n
24
SER
24
A
CYS
25
n
25
CYS
25
A
VAL
26
n
26
VAL
26
A
ILE
27
n
27
ILE
27
A
CYS
28
n
28
CYS
28
A
ARG
29
n
29
ARG
29
A
ASP
30
n
30
ASP
30
A
SER
31
n
31
SER
31
A
LEU
32
n
32
LEU
32
A
LYS
33
n
33
LYS
33
A
HIS
34
n
34
HIS
34
A
ALA
35
n
35
ALA
35
A
SER
36
n
36
SER
36
A
HIS
37
n
37
HIS
37
A
ASN
38
n
38
ASN
38
A
PHE
39
n
39
PHE
39
A
LEU
40
n
40
LEU
40
A
PRO
41
n
41
PRO
41
A
ILE
42
n
42
ILE
42
A
author_defined_assembly
1
monomeric
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
9
A
CD2
HIS
9
1_555
90.3
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
9
A
NE2
HIS
9
1_555
95.6
A
HIS
9
A
CD2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
9
A
NE2
HIS
9
1_555
40.9
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
43
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
28
1_555
97.6
A
HIS
9
A
CD2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
28
1_555
151.0
A
HIS
9
A
NE2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
A
CYS
28
A
SG
CYS
28
1_555
110.3
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
CD2
HIS
34
1_555
85.3
A
HIS
9
A
CD2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
CD2
HIS
34
1_555
108.1
A
HIS
9
A
NE2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
CD2
HIS
34
1_555
148.8
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
CD2
HIS
34
1_555
100.4
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
NE2
HIS
34
1_555
121.7
A
HIS
9
A
CD2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
NE2
HIS
34
1_555
92.0
A
HIS
9
A
NE2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
NE2
HIS
34
1_555
121.8
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
NE2
HIS
34
1_555
107.1
A
HIS
34
A
CD2
HIS
34
1_555
A
ZN
43
B
ZN
ZN
1_555
A
HIS
34
A
NE2
HIS
34
1_555
39.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
1
A
ARG
1
1
Y
1
A
PRO
2
A
PRO
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
A
O
O
LEU
LEU
15
40
2.19
1
A
ARG
12
0.280
SIDE CHAIN
1
A
ARG
29
0.278
SIDE CHAIN
1
A
LYS
5
-66.69
-80.53
1
A
CYS
6
14.25
68.44
1
A
GLU
8
39.46
97.00
1
A
HIS
9
179.00
-63.45
1
A
GLU
11
-84.50
45.86
1
A
ARG
12
161.53
-14.00
1
A
LEU
15
-166.76
-144.76
1
A
CYS
17
-128.65
-87.42
1
A
LYS
18
60.87
161.58
1
A
ASP
20
179.13
47.32
1
A
SER
24
58.78
115.58
1
A
CYS
25
-137.73
-158.67
1
A
CYS
28
-172.38
34.97
1
A
ARG
29
78.64
-0.08
1
A
ASP
30
-157.46
-40.54
1
A
SER
31
79.13
57.32
1
A
ALA
35
77.01
-77.15
1
A
SER
36
-152.79
20.75
1
A
HIS
37
-49.77
-92.48
1
A
ASN
38
174.18
154.38
XNF7 BBOX, DEVELOPMENTAL PROTEIN, PH 7.5, 30 C, WITH ZINC, NMR, 1 STRUCTURE
1
Y
N
2
N
N
A
ILE
27
A
ILE
27
HELX_P
HELICAL TURN
A
SER
31
A
SER
31
1
H1
5
metalc
2.316
A
CYS
6
A
SG
CYS
6
1_555
A
ZN
43
B
ZN
ZN
1_555
metalc
1.904
A
HIS
9
A
CD2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
metalc
2.044
A
HIS
9
A
NE2
HIS
9
1_555
A
ZN
43
B
ZN
ZN
1_555
metalc
2.301
A
CYS
28
A
SG
CYS
28
1_555
A
ZN
43
B
ZN
ZN
1_555
metalc
2.177
A
HIS
34
A
CD2
HIS
34
1_555
A
ZN
43
B
ZN
ZN
1_555
metalc
1.527
A
HIS
34
A
NE2
HIS
34
1_555
A
ZN
43
B
ZN
ZN
1_555
ZINC-BINDING PROTEIN
ZINC-BINDING PROTEIN, XNF7, BBOX, DEVELOPMENT, MID-BLASTULA-TRANSITION
NF7B_XENLA
UNP
1
1
Q92021
MEEEEGADDGEQGEEEVLVVNVGSTYPCKRSDGSQHDAEIVKVRYNKQAGREEYYAHYVGLNRRQNEWVDKSRLVLTKPP
KEGETNGTDQEVTDTAEQPDSKTPQKRKIEEPEPEPKKAKVEEKDASKNASSLGAAGDFAEELTCPLCVELFKDPVMVAC
GHNFCRSCIDKAWEGQSSFACPECRESITDRKYTINRVLANLAKKAACTPVTPVEKKTRPLEKCSEHDERLKLYCKDDGT
LSCVICRDSLKHASHNFLPILDAVGVYREELSAIVAPLEASLKVTEQLSSEQSDKIEQHNKNMSQYKEHITSEFEKLHKF
LREREEKLLEQLKEQGENLLTEMENNLVKMQESQDAIKKTISLAKERMEDTDSISFLMDIKAFIDKCQEQQRAVISTGNT
LLSKELCQGTFKGPIQYIMWKELKSVVIPSLTPMLLDPTSAHPNLHLSDGLTSVRYGENKLSLPDNPKRFSQCILVLGSQ
GFDSGRHYWEVEVGDKTAWDVGMASESSNRKGKIKLNPKNGYWAIWLRNGNAYKALESPSKSLSLSSHPRKIGVYVDYEG
GQISFYNADDMTIIYTFNATFTEKLYPYLSPFLHDSGKNVDPLRFVHNK
219
260
1FRE
1
42
Q92021
A
1
1
42
1
1
A
LEU
13
A
LEU
13
A
LYS
18
A
LYS
18
A
ASN
38
A
ASN
38
A
PRO
41
A
PRO
41
ZINC BINDING SITE 1.
Unknown
5
BINDING SITE FOR RESIDUE ZN A 43
A
ZN
43
Software
5
A
CYS
6
A
CYS
6
5
1_555
A
HIS
9
A
HIS
9
5
1_555
A
CYS
28
A
CYS
28
5
1_555
A
HIS
34
A
HIS
34
5
1_555
A
ZN
43
B
ZN
5
1_555
A
CYS
6
A
CYS
6
5
1_555
A
HIS
9
A
HIS
9
5
1_555
A
LEU
13
A
LEU
13
5
1_555
A
CYS
28
A
CYS
28
5
1_555
A
HIS
34
A
HIS
34
5
1_555
1
P 1