0.015015 0.000000 0.000000 0.000000 0.008688 0.000000 0.000000 0.000000 0.013643 0.00000 0.00000 0.00000 CIS PROLINE - PRO L 8 CIS PROLINE - PRO L 101 CIS PROLINE - PRO L 147 CIS PROLINE - PRO H 371 CIS PROLINE - PRO H 373 CIS PROLINE - PRO H 413 Churchill, M.E.A. Wilson, I.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 66.600 115.100 73.300 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 241 534 556 10.1006/jmbi.1994.1530 7520084 Crystal structure of a peptide complex of anti-influenza peptide antibody Fab 26/9. Comparison of two different antibodies bound to the same peptide antigen. 1994 UK J.Mol.Biol. JMOBAK 0070 0022-2836 234 1098 Detailed Analysis of the Free and Bound Conformations of an Antibody: X-Ray Structures of Fab 17(Slash)9 and Three Different Fab-Peptide Complexes 1993 US Science SCIEAS 0038 0036-8075 255 959 Structural Evidence for Induced Fit as a Mechanism for Antibody-Antigen Recognition 1992 US J.Biol.Chem. JBCHA3 0071 0021-9258 263 17100 Preliminary Crystallographic Data, Primary Sequence, and Binding Data for the Anti-Peptide Fab and its Complex with a Synthetic Peptide from Influenza Hemagglutinin 1988 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 24028.650 IGG2A 26/9 FAB (LIGHT CHAIN) 1 man polymer 23756.715 IGG2A 26/9 FAB (HEAVY CHAIN) 1 man polymer 902.969 INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101 - 108) 1 man polymer 18.015 water 1 nat water no no DIVMTQSPSSLTVTAGEKVTMSCKSSQSLFNSGKRKNFLTWYHQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLT ITSVQAEDLAIYYCQNDYSHPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR DIVMTQSPSSLTVTAGEKVTMSCKSSQSLFNSGKRKNFLTWYHQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLT ITSVQAEDLAIYYCQNDYSHPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR L polypeptide(L) no no EVLLVESGGDLVKPGGFLKLSCAASGFTFSSFGMSWVRHTPDKRLEWVATISNGGGYTYYQDSVKGRFTISRDNAKNTLF LEMTSLKSEDAGLYYCARRERYDEKGFAYWGRGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR EVLLVESGGDLVKPGGFLKLSCAASGFTFSSFGMSWVRHTPDKRLEWVATISNGGGYTYYQDSVKGRFTISRDNAKNTLF LEMTSLKSEDAGLYYCARRERYDEKGFAYWGRGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLT WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR H polypeptide(L) no yes (ACE)DVPDYASL(NH2) XDVPDYASLX P polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n mouse sample 10090 Mus musculus mouse sample 10090 Mus musculus 2.88 57.35 repository Initial release Version format compliance Version format compliance Source and taxonomy 1 0 1994-05-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2013-09-18 Y 1994-01-17 REL REL HOH water ONE BOUND WATER IS INCLUDED IN THE PEPTIDE BINDING SITE OF THE FAB. THE LIGHT CHAIN IS NUMBERED AS CHAIN L 1 - 217. THE HEAVY CHAIN IS NUMBERED AS CHAIN H 218 - 437. THE PEPTIDE IS NUMBERED AS CHAIN P 1 - 9. HOH 600 4 HOH HOH 600 L ASP 1 n 1 ASP 1 L ILE 2 n 2 ILE 2 L VAL 3 n 3 VAL 3 L MET 4 n 4 MET 4 L THR 5 n 5 THR 5 L GLN 6 n 6 GLN 6 L SER 7 n 7 SER 7 L PRO 8 n 8 PRO 8 L SER 9 n 9 SER 9 L SER 10 n 10 SER 10 L LEU 11 n 11 LEU 11 L THR 12 n 12 THR 12 L VAL 13 n 13 VAL 13 L THR 14 n 14 THR 14 L ALA 15 n 15 ALA 15 L GLY 16 n 16 GLY 16 L GLU 17 n 17 GLU 17 L LYS 18 n 18 LYS 18 L VAL 19 n 19 VAL 19 L THR 20 n 20 THR 20 L MET 21 n 21 MET 21 L SER 22 n 22 SER 22 L CYS 23 n 23 CYS 23 L LYS 24 n 24 LYS 24 L SER 25 n 25 SER 25 L SER 26 n 26 SER 26 L GLN 27 n 27 GLN 27 L SER 28 n 28 SER 28 L LEU 29 n 29 LEU 29 L PHE 30 n 30 PHE 30 L ASN 31 n 31 ASN 31 L SER 32 n 32 SER 32 L GLY 33 n 33 GLY 33 L LYS 34 n 34 LYS 34 L ARG 35 n 35 ARG 35 L LYS 36 n 36 LYS 36 L ASN 37 n 37 ASN 37 L PHE 38 n 38 PHE 38 L LEU 39 n 39 LEU 39 L THR 40 n 40 THR 40 L TRP 41 n 41 TRP 41 L TYR 42 n 42 TYR 42 L HIS 43 n 43 HIS 43 L GLN 44 n 44 GLN 44 L LYS 45 n 45 LYS 45 L PRO 46 n 46 PRO 46 L GLY 47 n 47 GLY 47 L GLN 48 n 48 GLN 48 L PRO 49 n 49 PRO 49 L PRO 50 n 50 PRO 50 L LYS 51 n 51 LYS 51 L LEU 52 n 52 LEU 52 L LEU 53 n 53 LEU 53 L ILE 54 n 54 ILE 54 L TYR 55 n 55 TYR 55 L TRP 56 n 56 TRP 56 L ALA 57 n 57 ALA 57 L SER 58 n 58 SER 58 L THR 59 n 59 THR 59 L ARG 60 n 60 ARG 60 L GLU 61 n 61 GLU 61 L SER 62 n 62 SER 62 L GLY 63 n 63 GLY 63 L VAL 64 n 64 VAL 64 L PRO 65 n 65 PRO 65 L ASP 66 n 66 ASP 66 L ARG 67 n 67 ARG 67 L PHE 68 n 68 PHE 68 L SER 69 n 69 SER 69 L GLY 70 n 70 GLY 70 L SER 71 n 71 SER 71 L GLY 72 n 72 GLY 72 L SER 73 n 73 SER 73 L GLY 74 n 74 GLY 74 L THR 75 n 75 THR 75 L ASP 76 n 76 ASP 76 L PHE 77 n 77 PHE 77 L THR 78 n 78 THR 78 L LEU 79 n 79 LEU 79 L THR 80 n 80 THR 80 L ILE 81 n 81 ILE 81 L THR 82 n 82 THR 82 L SER 83 n 83 SER 83 L VAL 84 n 84 VAL 84 L GLN 85 n 85 GLN 85 L ALA 86 n 86 ALA 86 L GLU 87 n 87 GLU 87 L ASP 88 n 88 ASP 88 L LEU 89 n 89 LEU 89 L ALA 90 n 90 ALA 90 L ILE 91 n 91 ILE 91 L TYR 92 n 92 TYR 92 L TYR 93 n 93 TYR 93 L CYS 94 n 94 CYS 94 L GLN 95 n 95 GLN 95 L ASN 96 n 96 ASN 96 L ASP 97 n 97 ASP 97 L TYR 98 n 98 TYR 98 L SER 99 n 99 SER 99 L HIS 100 n 100 HIS 100 L PRO 101 n 101 PRO 101 L LEU 102 n 102 LEU 102 L THR 103 n 103 THR 103 L PHE 104 n 104 PHE 104 L GLY 105 n 105 GLY 105 L ALA 106 n 106 ALA 106 L GLY 107 n 107 GLY 107 L THR 108 n 108 THR 108 L LYS 109 n 109 LYS 109 L LEU 110 n 110 LEU 110 L GLU 111 n 111 GLU 111 L LEU 112 n 112 LEU 112 L LYS 113 n 113 LYS 113 L ARG 114 n 114 ARG 114 L ALA 115 n 115 ALA 115 L ASP 116 n 116 ASP 116 L ALA 117 n 117 ALA 117 L ALA 118 n 118 ALA 118 L PRO 119 n 119 PRO 119 L THR 120 n 120 THR 120 L VAL 121 n 121 VAL 121 L SER 122 n 122 SER 122 L ILE 123 n 123 ILE 123 L PHE 124 n 124 PHE 124 L PRO 125 n 125 PRO 125 L PRO 126 n 126 PRO 126 L SER 127 n 127 SER 127 L SER 128 n 128 SER 128 L GLU 129 n 129 GLU 129 L GLN 130 n 130 GLN 130 L LEU 131 n 131 LEU 131 L THR 132 n 132 THR 132 L SER 133 n 133 SER 133 L GLY 134 n 134 GLY 134 L GLY 135 n 135 GLY 135 L ALA 136 n 136 ALA 136 L SER 137 n 137 SER 137 L VAL 138 n 138 VAL 138 L VAL 139 n 139 VAL 139 L CYS 140 n 140 CYS 140 L PHE 141 n 141 PHE 141 L LEU 142 n 142 LEU 142 L ASN 143 n 143 ASN 143 L ASN 144 n 144 ASN 144 L PHE 145 n 145 PHE 145 L TYR 146 n 146 TYR 146 L PRO 147 n 147 PRO 147 L LYS 148 n 148 LYS 148 L ASP 149 n 149 ASP 149 L ILE 150 n 150 ILE 150 L ASN 151 n 151 ASN 151 L VAL 152 n 152 VAL 152 L LYS 153 n 153 LYS 153 L TRP 154 n 154 TRP 154 L LYS 155 n 155 LYS 155 L ILE 156 n 156 ILE 156 L ASP 157 n 157 ASP 157 L GLY 158 n 158 GLY 158 L SER 159 n 159 SER 159 L GLU 160 n 160 GLU 160 L ARG 161 n 161 ARG 161 L GLN 162 n 162 GLN 162 L ASN 163 n 163 ASN 163 L GLY 164 n 164 GLY 164 L VAL 165 n 165 VAL 165 L LEU 166 n 166 LEU 166 L ASN 167 n 167 ASN 167 L SER 168 n 168 SER 168 L TRP 169 n 169 TRP 169 L THR 170 n 170 THR 170 L ASP 171 n 171 ASP 171 L GLN 172 n 172 GLN 172 L ASP 173 n 173 ASP 173 L SER 174 n 174 SER 174 L LYS 175 n 175 LYS 175 L ASP 176 n 176 ASP 176 L SER 177 n 177 SER 177 L THR 178 n 178 THR 178 L TYR 179 n 179 TYR 179 L SER 180 n 180 SER 180 L MET 181 n 181 MET 181 L SER 182 n 182 SER 182 L SER 183 n 183 SER 183 L THR 184 n 184 THR 184 L LEU 185 n 185 LEU 185 L THR 186 n 186 THR 186 L LEU 187 n 187 LEU 187 L THR 188 n 188 THR 188 L LYS 189 n 189 LYS 189 L ASP 190 n 190 ASP 190 L GLU 191 n 191 GLU 191 L TYR 192 n 192 TYR 192 L GLU 193 n 193 GLU 193 L ARG 194 n 194 ARG 194 L HIS 195 n 195 HIS 195 L ASN 196 n 196 ASN 196 L SER 197 n 197 SER 197 L TYR 198 n 198 TYR 198 L THR 199 n 199 THR 199 L CYS 200 n 200 CYS 200 L GLU 201 n 201 GLU 201 L ALA 202 n 202 ALA 202 L THR 203 n 203 THR 203 L HIS 204 n 204 HIS 204 L LYS 205 n 205 LYS 205 L THR 206 n 206 THR 206 L SER 207 n 207 SER 207 L THR 208 n 208 THR 208 L SER 209 n 209 SER 209 L PRO 210 n 210 PRO 210 L ILE 211 n 211 ILE 211 L VAL 212 n 212 VAL 212 L LYS 213 n 213 LYS 213 L SER 214 n 214 SER 214 L PHE 215 n 215 PHE 215 L ASN 216 n 216 ASN 216 L ARG 217 n 217 ARG 217 L GLU 218 n 1 GLU 218 H VAL 219 n 2 VAL 219 H LEU 220 n 3 LEU 220 H LEU 221 n 4 LEU 221 H VAL 222 n 5 VAL 222 H GLU 223 n 6 GLU 223 H SER 224 n 7 SER 224 H GLY 225 n 8 GLY 225 H GLY 226 n 9 GLY 226 H ASP 227 n 10 ASP 227 H LEU 228 n 11 LEU 228 H VAL 229 n 12 VAL 229 H LYS 230 n 13 LYS 230 H PRO 231 n 14 PRO 231 H GLY 232 n 15 GLY 232 H GLY 233 n 16 GLY 233 H PHE 234 n 17 PHE 234 H LEU 235 n 18 LEU 235 H LYS 236 n 19 LYS 236 H LEU 237 n 20 LEU 237 H SER 238 n 21 SER 238 H CYS 239 n 22 CYS 239 H ALA 240 n 23 ALA 240 H ALA 241 n 24 ALA 241 H SER 242 n 25 SER 242 H GLY 243 n 26 GLY 243 H PHE 244 n 27 PHE 244 H THR 245 n 28 THR 245 H PHE 246 n 29 PHE 246 H SER 247 n 30 SER 247 H SER 248 n 31 SER 248 H PHE 249 n 32 PHE 249 H GLY 250 n 33 GLY 250 H MET 251 n 34 MET 251 H SER 252 n 35 SER 252 H TRP 253 n 36 TRP 253 H VAL 254 n 37 VAL 254 H ARG 255 n 38 ARG 255 H HIS 256 n 39 HIS 256 H THR 257 n 40 THR 257 H PRO 258 n 41 PRO 258 H ASP 259 n 42 ASP 259 H LYS 260 n 43 LYS 260 H ARG 261 n 44 ARG 261 H LEU 262 n 45 LEU 262 H GLU 263 n 46 GLU 263 H TRP 264 n 47 TRP 264 H VAL 265 n 48 VAL 265 H ALA 266 n 49 ALA 266 H THR 267 n 50 THR 267 H ILE 268 n 51 ILE 268 H SER 269 n 52 SER 269 H ASN 270 n 53 ASN 270 H GLY 271 n 54 GLY 271 H GLY 272 n 55 GLY 272 H GLY 273 n 56 GLY 273 H TYR 274 n 57 TYR 274 H THR 275 n 58 THR 275 H TYR 276 n 59 TYR 276 H TYR 277 n 60 TYR 277 H GLN 278 n 61 GLN 278 H ASP 279 n 62 ASP 279 H SER 280 n 63 SER 280 H VAL 281 n 64 VAL 281 H LYS 282 n 65 LYS 282 H GLY 283 n 66 GLY 283 H ARG 284 n 67 ARG 284 H PHE 285 n 68 PHE 285 H THR 286 n 69 THR 286 H ILE 287 n 70 ILE 287 H SER 288 n 71 SER 288 H ARG 289 n 72 ARG 289 H ASP 290 n 73 ASP 290 H ASN 291 n 74 ASN 291 H ALA 292 n 75 ALA 292 H LYS 293 n 76 LYS 293 H ASN 294 n 77 ASN 294 H THR 295 n 78 THR 295 H LEU 296 n 79 LEU 296 H PHE 297 n 80 PHE 297 H LEU 298 n 81 LEU 298 H GLU 299 n 82 GLU 299 H MET 300 n 83 MET 300 H THR 301 n 84 THR 301 H SER 302 n 85 SER 302 H LEU 303 n 86 LEU 303 H LYS 304 n 87 LYS 304 H SER 305 n 88 SER 305 H GLU 306 n 89 GLU 306 H ASP 307 n 90 ASP 307 H ALA 308 n 91 ALA 308 H GLY 309 n 92 GLY 309 H LEU 310 n 93 LEU 310 H TYR 311 n 94 TYR 311 H TYR 312 n 95 TYR 312 H CYS 313 n 96 CYS 313 H ALA 314 n 97 ALA 314 H ARG 315 n 98 ARG 315 H ARG 316 n 99 ARG 316 H GLU 317 n 100 GLU 317 H ARG 318 n 101 ARG 318 H TYR 319 n 102 TYR 319 H ASP 320 n 103 ASP 320 H GLU 321 n 104 GLU 321 H LYS 322 n 105 LYS 322 H GLY 323 n 106 GLY 323 H PHE 324 n 107 PHE 324 H ALA 325 n 108 ALA 325 H TYR 326 n 109 TYR 326 H TRP 327 n 110 TRP 327 H GLY 328 n 111 GLY 328 H ARG 329 n 112 ARG 329 H GLY 330 n 113 GLY 330 H THR 331 n 114 THR 331 H LEU 332 n 115 LEU 332 H VAL 333 n 116 VAL 333 H THR 334 n 117 THR 334 H VAL 335 n 118 VAL 335 H SER 336 n 119 SER 336 H ALA 337 n 120 ALA 337 H ALA 338 n 121 ALA 338 H LYS 339 n 122 LYS 339 H THR 340 n 123 THR 340 H THR 341 n 124 THR 341 H ALA 342 n 125 ALA 342 H PRO 343 n 126 PRO 343 H SER 344 n 127 SER 344 H VAL 345 n 128 VAL 345 H TYR 346 n 129 TYR 346 H PRO 347 n 130 PRO 347 H LEU 348 n 131 LEU 348 H ALA 349 n 132 ALA 349 H PRO 350 n 133 PRO 350 H VAL 351 n 134 VAL 351 H CYS 352 n 135 CYS 352 H GLY 353 n 136 GLY 353 H ASP 354 n 137 ASP 354 H THR 355 n 138 THR 355 H THR 356 n 139 THR 356 H GLY 357 n 140 GLY 357 H SER 358 n 141 SER 358 H SER 359 n 142 SER 359 H VAL 360 n 143 VAL 360 H THR 361 n 144 THR 361 H LEU 362 n 145 LEU 362 H GLY 363 n 146 GLY 363 H CYS 364 n 147 CYS 364 H LEU 365 n 148 LEU 365 H VAL 366 n 149 VAL 366 H LYS 367 n 150 LYS 367 H GLY 368 n 151 GLY 368 H TYR 369 n 152 TYR 369 H PHE 370 n 153 PHE 370 H PRO 371 n 154 PRO 371 H GLU 372 n 155 GLU 372 H PRO 373 n 156 PRO 373 H VAL 374 n 157 VAL 374 H THR 375 n 158 THR 375 H LEU 376 n 159 LEU 376 H THR 377 n 160 THR 377 H TRP 378 n 161 TRP 378 H ASN 379 n 162 ASN 379 H SER 380 n 163 SER 380 H GLY 381 n 164 GLY 381 H SER 382 n 165 SER 382 H LEU 383 n 166 LEU 383 H SER 384 n 167 SER 384 H SER 385 n 168 SER 385 H GLY 386 n 169 GLY 386 H VAL 387 n 170 VAL 387 H HIS 388 n 171 HIS 388 H THR 389 n 172 THR 389 H PHE 390 n 173 PHE 390 H PRO 391 n 174 PRO 391 H ALA 392 n 175 ALA 392 H VAL 393 n 176 VAL 393 H LEU 394 n 177 LEU 394 H GLN 395 n 178 GLN 395 H SER 396 n 179 SER 396 H ASP 397 n 180 ASP 397 H LEU 398 n 181 LEU 398 H TYR 399 n 182 TYR 399 H THR 400 n 183 THR 400 H LEU 401 n 184 LEU 401 H SER 402 n 185 SER 402 H SER 403 n 186 SER 403 H SER 404 n 187 SER 404 H VAL 405 n 188 VAL 405 H THR 406 n 189 THR 406 H VAL 407 n 190 VAL 407 H THR 408 n 191 THR 408 H SER 409 n 192 SER 409 H SER 410 n 193 SER 410 H THR 411 n 194 THR 411 H TRP 412 n 195 TRP 412 H PRO 413 n 196 PRO 413 H SER 414 n 197 SER 414 H GLN 415 n 198 GLN 415 H SER 416 n 199 SER 416 H ILE 417 n 200 ILE 417 H THR 418 n 201 THR 418 H CYS 419 n 202 CYS 419 H ASN 420 n 203 ASN 420 H VAL 421 n 204 VAL 421 H ALA 422 n 205 ALA 422 H HIS 423 n 206 HIS 423 H PRO 424 n 207 PRO 424 H ALA 425 n 208 ALA 425 H SER 426 n 209 SER 426 H SER 427 n 210 SER 427 H THR 428 n 211 THR 428 H LYS 429 n 212 LYS 429 H VAL 430 n 213 VAL 430 H ASP 431 n 214 ASP 431 H LYS 432 n 215 LYS 432 H LYS 433 n 216 LYS 433 H ILE 434 n 217 ILE 434 H GLU 435 n 218 GLU 435 H PRO 436 n 219 PRO 436 H ARG 437 n 220 ARG 437 H ACE 1 n 1 ACE 1 P ASP 2 n 2 ASP 2 P VAL 3 n 3 VAL 3 P PRO 4 n 4 PRO 4 P ASP 5 n 5 ASP 5 P TYR 6 n 6 TYR 6 P ALA 7 n 7 ALA 7 P SER 8 n 8 SER 8 P LEU 9 n 9 LEU 9 P NH2 10 n 10 NH2 10 P author_and_software_defined_assembly PISA 3 trimeric 5090 -21 19660 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 L O SER 7 A O SER 7 L N SER 22 A N SER 22 L N CYS 23 A N CYS 23 L O PHE 77 A O PHE 77 L N THR 80 A N THR 80 L O SER 69 A O SER 69 L N LEU 11 A N LEU 11 L O LYS 109 A O LYS 109 L O THR 108 A O THR 108 L N TYR 92 A N TYR 92 L O GLN 95 A O GLN 95 L N THR 40 A N THR 40 L N HIS 43 A N HIS 43 L O LYS 51 A O LYS 51 L N TYR 55 A N TYR 55 L O THR 59 A O THR 59 L N PHE 124 A N PHE 124 L O VAL 139 A O VAL 139 L O PHE 145 A O PHE 145 L N TYR 179 A N TYR 179 L O THR 184 A O THR 184 L N LEU 166 A N LEU 166 L N ARG 161 A N ARG 161 L O TRP 154 A O TRP 154 L O LYS 155 A O LYS 155 L N THR 199 A N THR 199 L N ALA 202 A N ALA 202 L O ILE 211 A O ILE 211 H O SER 224 B O SER 7 H N SER 238 B N SER 21 H O CYS 239 B O CYS 22 H N LEU 296 B N LEU 79 H N GLU 299 B N GLU 82 H O THR 286 B O THR 69 H N TYR 276 B N TYR 59 H O THR 267 B O THR 50 H N ILE 268 B N ILE 51 H O MET 251 B O MET 34 H N HIS 256 B N HIS 39 H O LEU 310 B O LEU 93 H N ARG 315 B N ARG 98 H O TYR 326 B O TYR 109 H N TYR 276 B N TYR 59 H O THR 267 B O THR 50 H N ILE 268 B N ILE 51 H O MET 251 B O MET 34 H N HIS 256 B N HIS 39 H O LEU 310 B O LEU 93 H N TYR 311 B N TYR 94 H O THR 331 B O THR 114 H O THR 334 B O THR 117 H N VAL 229 B N VAL 12 H N LEU 348 B N LEU 131 H O GLY 363 B O GLY 146 H O TYR 369 B O TYR 152 H N TYR 399 B N TYR 182 H O SER 404 B O SER 187 H N HIS 388 B N HIS 171 H O THR 377 B O THR 160 H N ASN 420 B N ASN 203 H N HIS 423 B N HIS 206 H O THR 428 B O THR 211 1 L TYR 92 0.079 SIDE CHAIN 1 3.31 0.50 120.30 123.61 L L L NE CZ NH1 ARG ARG ARG 35 35 35 N 1 7.40 0.80 106.30 113.70 L L L CD1 CG CD2 TRP TRP TRP 41 41 41 N 1 -5.88 0.80 107.30 101.42 L L L CE2 CD2 CG TRP TRP TRP 41 41 41 N 1 -5.12 0.60 121.00 115.88 L L L CB CG CD2 TYR TYR TYR 42 42 42 N 1 6.32 0.80 106.30 112.62 L L L CD1 CG CD2 TRP TRP TRP 56 56 56 N 1 -6.27 0.80 107.30 101.03 L L L CE2 CD2 CG TRP TRP TRP 56 56 56 N 1 13.89 2.30 115.30 129.19 L L L CA CB CG LEU LEU LEU 142 142 142 N 1 7.02 0.80 106.30 113.32 L L L CD1 CG CD2 TRP TRP TRP 154 154 154 N 1 -5.84 0.80 107.30 101.46 L L L CE2 CD2 CG TRP TRP TRP 154 154 154 N 1 4.49 0.50 120.30 124.79 L L L NE CZ NH1 ARG ARG ARG 161 161 161 N 1 -4.11 0.50 120.30 116.19 L L L NE CZ NH2 ARG ARG ARG 161 161 161 N 1 6.94 0.80 106.30 113.24 L L L CD1 CG CD2 TRP TRP TRP 169 169 169 N 1 -9.16 1.30 127.00 117.84 L L L CB CG CD1 TRP TRP TRP 169 169 169 N 1 -6.41 0.80 107.30 100.89 L L L CE2 CD2 CG TRP TRP TRP 169 169 169 N 1 6.70 0.90 133.90 140.60 L L L CG CD2 CE3 TRP TRP TRP 169 169 169 N 1 -11.25 1.80 114.00 102.75 L L L CA CB SG CYS CYS CYS 200 200 200 N 1 14.40 2.20 113.40 127.80 H H H CA CB CG GLU GLU GLU 218 218 218 N 1 5.09 0.80 106.30 111.39 H H H CD1 CG CD2 TRP TRP TRP 253 253 253 N 1 -4.90 0.80 107.30 102.40 H H H CE2 CD2 CG TRP TRP TRP 253 253 253 N 1 -17.74 2.60 111.60 93.86 H H H CB CG CD ARG ARG ARG 255 255 255 N 1 7.11 0.80 106.30 113.41 H H H CD1 CG CD2 TRP TRP TRP 264 264 264 N 1 -6.29 1.00 110.10 103.81 H H H CG CD1 NE1 TRP TRP TRP 264 264 264 N 1 -5.57 0.80 107.30 101.73 H H H CE2 CD2 CG TRP TRP TRP 264 264 264 N 1 -4.62 0.60 121.00 116.38 H H H CB CG CD1 TYR TYR TYR 276 276 276 N 1 -3.24 0.50 120.30 117.06 H H H NE CZ NH2 ARG ARG ARG 284 284 284 N 1 -3.87 0.50 120.30 116.43 H H H NE CZ NH2 ARG ARG ARG 289 289 289 N 1 -4.07 0.60 121.00 116.93 H H H CB CG CD2 TYR TYR TYR 311 311 311 N 1 -4.06 0.50 120.30 116.24 H H H NE CZ NH2 ARG ARG ARG 315 315 315 N 1 -4.09 0.60 121.00 116.91 H H H CB CG CD2 TYR TYR TYR 319 319 319 N 1 6.88 0.80 106.30 113.18 H H H CD1 CG CD2 TRP TRP TRP 327 327 327 N 1 -5.50 0.80 107.30 101.80 H H H CE2 CD2 CG TRP TRP TRP 327 327 327 N 1 7.11 0.80 106.30 113.41 H H H CD1 CG CD2 TRP TRP TRP 378 378 378 N 1 -5.86 0.80 107.30 101.44 H H H CE2 CD2 CG TRP TRP TRP 378 378 378 N 1 -4.45 0.60 121.00 116.55 H H H CB CG CD1 TYR TYR TYR 399 399 399 N 1 6.70 0.80 106.30 113.00 H H H CD1 CG CD2 TRP TRP TRP 412 412 412 N 1 -5.38 0.80 107.30 101.92 H H H CE2 CD2 CG TRP TRP TRP 412 412 412 N 1 -11.17 1.80 114.00 102.83 H H H CA CB SG CYS CYS CYS 419 419 419 N 1 15.92 2.20 113.40 129.32 H H H CA CB CG LYS LYS LYS 433 433 433 N 1 L L NE2 CD2 HIS HIS 43 43 -0.084 0.011 1.373 1.289 N 1 L L NE2 CD2 HIS HIS 100 100 -0.082 0.011 1.373 1.291 N 1 L L NE2 CD2 HIS HIS 204 204 -0.085 0.011 1.373 1.288 N 1 H H NE2 CD2 HIS HIS 256 256 -0.072 0.011 1.373 1.301 N 1 H H NE2 CD2 HIS HIS 388 388 -0.069 0.011 1.373 1.304 N 1 H H NE2 CD2 HIS HIS 423 423 -0.067 0.011 1.373 1.306 N 1 L ALA 57 67.82 -26.34 1 L PRO 125 -42.31 154.89 1 L SER 133 -73.63 32.14 1 L ASP 157 31.87 54.92 1 L SER 197 57.73 95.67 1 L THR 206 -64.81 4.34 1 H LYS 260 68.21 -11.63 1 H GLU 306 -69.03 13.82 1 H THR 356 56.97 18.28 1 H SER 358 -34.46 -35.46 1 H SER 380 59.42 -12.87 1 H PRO 391 -49.53 157.95 1 H ASP 397 69.67 -5.95 1 H ALA 425 -49.69 -5.80 1 H SER 426 -141.90 12.00 0.19 0.19 2.8 8. 1 2.8 8. 1 3427 0 0 3426 0.015 3.48 28.4 model building X-PLOR refinement X-PLOR phasing X-PLOR IGG2A FAB FRAGMENT (FAB 26/9) COMPLEXED WITH INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101 - 108) CRYSTAL STRUCTURE, SEQUENCE, AND EPITOPE MAPPING OF A PEPTIDE COMPLEX OF AN ANTI-INFLUENZA HA PEPTIDE ANTIBODY FAB 26(SLASH)9: FINE-TUNING ANTIBODY SPECIFICITY 1 N N 2 N N 3 N N 4 N N L GLN 85 A GLN 85 HELX_P L LEU 89 A LEU 89 5 1 5 L SER 127 A SER 127 HELX_P L SER 133 A SER 133 1 2 7 L LYS 189 A LYS 189 HELX_P L GLU 193 A GLU 193 1 3 5 H THR 245 B THR 28 HELX_P H PHE 249 B PHE 32 5 4 5 H LYS 304 B LYS 87 HELX_P H ALA 308 B ALA 91 5 5 5 H GLY 353 B GLY 136 HELX_P H GLY 357 B GLY 140 5 6 5 H SER 380 B SER 163 HELX_P H SER 382 B SER 165 5 7 3 H PRO 424 B PRO 207 HELX_P H SER 427 B SER 210 5 8 4 disulf 2.322 L CYS 23 A SG CYS 23 1_555 L CYS 94 A SG CYS 94 1_555 disulf 2.382 L CYS 140 A SG CYS 140 1_555 L CYS 200 A SG CYS 200 1_555 disulf 2.347 H CYS 239 B SG CYS 22 1_555 H CYS 313 B SG CYS 96 1_555 disulf 2.514 H CYS 364 B SG CYS 147 1_555 H CYS 419 B SG CYS 202 1_555 covale 1.330 P ACE 1 C C ACE 1 1_555 P ASP 2 C N ASP 2 1_555 covale 1.325 P LEU 9 C C LEU 9 1_555 P NH2 10 C N NH2 10 1_555 Viral protein/Immune system IMMUNOGLOBULIN/VIRUS HEMAGGLUTININ, Viral protein-Immune system COMPLEX L SER 7 A SER 7 1 L PRO 8 A PRO 8 8.56 L HIS 100 A HIS 100 1 L PRO 101 A PRO 101 -16.10 L TYR 146 A TYR 146 1 L PRO 147 A PRO 147 -9.85 H PHE 370 B PHE 153 1 H PRO 371 B PRO 154 -13.11 H GLU 372 B GLU 155 1 H PRO 373 B PRO 156 -8.67 H TRP 412 B TRP 195 1 H PRO 413 B PRO 196 16.74 A31790 PIR 1 1 A31790 DIVMTQSPSSLTVTAGEKVTMSCTSSQSLFNSGKQKNYLTWYQQKPGQPPKVLIYWASTRESGVPDRFTGSGSGTDFTLT ISSVQAEDLAVYYCQNDYSNPLTFGGGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC AAA38230 GB 2 1 533229 EVQLVESGGDLVKPGGSLKLSCAASGFSFSSYGMSWVRQTPDKRLEWVATISNGGGYTYYPDSVKGRFTISRDNAKNTLY LQMSSLKSEDSAMYYCARRERYDENGFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGDXXTTGSSVTLGCLVKGYFPEPVT LXTWXXXXNSGSLSSGXVHTFPAVLQSXXDLYTLSSSVTVTSSXTWPXSQSITXCNVAHPASSTKVDKKIXXERGPTIXX KPCPPCKCPAPNLLG 1FRG PDB 3 1FRG 1 217 1FRG 1 217 A31790 L 1 1 217 1 219 1FRG 218 437 533229 H 2 1 220 1 10 1FRG 1 10 1FRG P 3 1 10 1 THR CONFLICT LYS 24 1FRG L A31790 PIR 24 24 1 GLN CONFLICT ARG 35 1FRG L A31790 PIR 35 35 1 TYR CONFLICT PHE 38 1FRG L A31790 PIR 38 38 1 GLN CONFLICT HIS 43 1FRG L A31790 PIR 43 43 1 VAL CONFLICT LEU 52 1FRG L A31790 PIR 52 52 1 THR CONFLICT SER 69 1FRG L A31790 PIR 69 69 1 SER CONFLICT THR 82 1FRG L A31790 PIR 82 82 1 VAL CONFLICT ILE 91 1FRG L A31790 PIR 91 91 1 ASN CONFLICT HIS 100 1FRG L A31790 PIR 100 100 1 GLY CONFLICT ALA 106 1FRG L A31790 PIR 106 106 2 GLN CONFLICT LEU 220 1FRG H 533229 GB 3 3 2 SER CONFLICT PHE 234 1FRG H 533229 GB 17 17 2 SER CONFLICT THR 245 1FRG H 533229 GB 28 28 2 TYR CONFLICT PHE 249 1FRG H 533229 GB 32 32 2 GLN CONFLICT HIS 256 1FRG H 533229 GB 39 39 2 PRO CONFLICT GLN 278 1FRG H 533229 GB 61 61 2 TYR CONFLICT PHE 297 1FRG H 533229 GB 80 80 2 GLN CONFLICT GLU 299 1FRG H 533229 GB 82 82 2 SER CONFLICT THR 301 1FRG H 533229 GB 84 84 2 SER CONFLICT ALA 308 1FRG H 533229 GB 91 91 2 ALA CONFLICT GLY 309 1FRG H 533229 GB 92 92 2 MET CONFLICT LEU 310 1FRG H 533229 GB 93 93 2 ASN CONFLICT LYS 322 1FRG H 533229 GB 105 105 2 GLN CONFLICT ARG 329 1FRG H 533229 GB 112 112 2 INSERTION PRO 436 1FRG H 533229 GB 219 4 6 4 4 4 5 6 4 3 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel L MET 4 A MET 4 L SER 7 A SER 7 L VAL 19 A VAL 19 L SER 25 A SER 25 L ASP 76 A ASP 76 L ILE 81 A ILE 81 L PHE 68 A PHE 68 L SER 73 A SER 73 L SER 10 A SER 10 L VAL 13 A VAL 13 L THR 108 A THR 108 L LEU 112 A LEU 112 L ILE 91 A ILE 91 L ASN 96 A ASN 96 L LEU 39 A LEU 39 L GLN 44 A GLN 44 L PRO 50 A PRO 50 L TYR 55 A TYR 55 L THR 59 A THR 59 L ARG 60 A ARG 60 L THR 120 A THR 120 L PHE 124 A PHE 124 L GLY 135 A GLY 135 L PHE 145 A PHE 145 L TYR 179 A TYR 179 L THR 188 A THR 188 L VAL 165 A VAL 165 L TRP 169 A TRP 169 L SER 159 A SER 159 L ARG 161 A ARG 161 L ILE 150 A ILE 150 L ILE 156 A ILE 156 L TYR 198 A TYR 198 L HIS 204 A HIS 204 L ILE 211 A ILE 211 L PHE 215 A PHE 215 H LEU 220 B LEU 3 H SER 224 B SER 7 H PHE 234 B PHE 17 H SER 242 B SER 25 H THR 295 B THR 78 H THR 301 B THR 84 H PHE 285 B PHE 68 H ASP 290 B ASP 73 H THR 275 B THR 58 H TYR 277 B TYR 60 H LEU 262 B LEU 45 H ILE 268 B ILE 51 H MET 251 B MET 34 H HIS 256 B HIS 39 H GLY 309 B GLY 92 H ARG 315 B ARG 98 H TYR 326 B TYR 109 H TRP 327 B TRP 110 H THR 275 B THR 58 H TYR 277 B TYR 60 H LEU 262 B LEU 45 H ILE 268 B ILE 51 H MET 251 B MET 34 H HIS 256 B HIS 39 H GLY 309 B GLY 92 H ARG 315 B ARG 98 H THR 331 B THR 114 H VAL 335 B VAL 118 H LEU 228 B LEU 11 H VAL 229 B VAL 12 H SER 344 B SER 127 H LEU 348 B LEU 131 H SER 359 B SER 142 H TYR 369 B TYR 152 H LEU 398 B LEU 181 H THR 408 B THR 191 H VAL 387 B VAL 170 H GLN 395 B GLN 178 H THR 375 B THR 158 H TRP 378 B TRP 161 H THR 418 B THR 201 H HIS 423 B HIS 206 H THR 428 B THR 211 H LYS 433 B LYS 216 BINDING SITE FOR RESIDUE ACE P 1 Software 1 BINDING SITE FOR RESIDUE NH2 P 10 Software 1 H ASN 270 B ASN 53 1 1_555 P LEU 9 C LEU 9 1 1_555 19 P 21 21 21