0.014749
0.000000
0.000000
0.000000
0.014749
0.000000
0.000000
0.000000
0.005263
0.00000
0.00000
0.00000
Muckelbauer, J.K.
Chang, C.-H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
67.800
67.800
190.000
C21 H20 N4 O4 S2
456.538
5-(3-MORPHOLIN-4-YL-PROPYL)-2-(3-NITRO-PHENYL)-4-THIOXO-4,5-DIHYDRO-1-THIA-3B,5-DIAZA-CYCLOPENTA[A]PENTALEN-6-ONE
6-[3-(4-MORPHOLINYL)PROPYL]-2-(3-NITROPHENYL)-5-THIOXO-5,6,-DIHYDRO-7H-THIENOL[2',3':4,5]PYRROLO[1,2-C] IMIDAZOL-7-ONE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
98
11879
11884
10.1073/pnas.211178398
11592999
Photochemically enhanced binding of small molecules to the tumor necrosis factor receptor-1 inhibits the binding of TNF-alpha.
2001
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
270
13303
13307
10.1074/jbc.270.22.13303
Crystallographic Evidence for Dimerization of Unliganded Tumor Necrosis Factor Receptor
1995
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
73
431
445
10.1016/0092-8674(93)90132-A
Crystal Structure of the Soluble Human 55 Kd Tnf Receptor-Human Tnfb Complex: Implication for Tnf Receptor Activation
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-02-13
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
5ID-B
APS
1.000
SYNCHROTRON
APS BEAMLINE 5ID-B
N OF ALA 62, CHAIN A IS BOUND TO LIGAND 705
18335.830
SOLUBLE TUMOR NECROSIS FACTOR RECEPTOR 1
55 KD EXTRACELLULAR DOMAIN (MET PLUS RESIDUES 12-272)
2
man
polymer
456.538
5-(3-MORPHOLIN-4-YL-PROPYL)-2-(3-NITRO-PHENYL)-4-THIOXO-4,5-DIHYDRO-1-THIA-3B,5-DIAZA-CYCLOPENTA[A]PENTALEN-6-ONE
1
syn
non-polymer
TUMOR NECROSIS FACTOR, BINDING PROTEIN 1, TBPI, P60, TNF-R1, TNF-RI, P55
no
no
MDSVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTV
DRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQI
EN
MDSVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTV
DRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQI
EN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
2.98
58.67
VAPOR DIFFUSION, SITTING DROP
8.5
MPD, Ammonium Acetate Tris Buffer, pH 8.5, VAPOR DIFFUSION, SITTING DROP at 297K
297
software
repository
Initial release
Version format compliance
Version format compliance
Refinement description
1
0
2001-10-12
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
contains the same protein complexed with photoreactive compound
RCSB
Y
RCSB
2000-09-11
REL
703
5-(3-MORPHOLIN-4-YL-PROPYL)-2-(3-NITRO-PHENYL)-4-THIOXO-4,5-DIHYDRO-1-THIA-3B,5-DIAZA-CYCLOPENTA[A]PENTALEN-6-ONE
703
962
2
703
703
962
A
MET
11
n
1
MET
11
A
ASP
12
n
2
ASP
12
A
SER
13
n
3
SER
13
A
VAL
14
n
4
VAL
14
A
CYS
15
n
5
CYS
15
A
PRO
16
n
6
PRO
16
A
GLN
17
n
7
GLN
17
A
GLY
18
n
8
GLY
18
A
LYS
19
n
9
LYS
19
A
TYR
20
n
10
TYR
20
A
ILE
21
n
11
ILE
21
A
HIS
22
n
12
HIS
22
A
PRO
23
n
13
PRO
23
A
GLN
24
n
14
GLN
24
A
ASN
25
n
15
ASN
25
A
ASN
26
n
16
ASN
26
A
SER
27
n
17
SER
27
A
ILE
28
n
18
ILE
28
A
CYS
29
n
19
CYS
29
A
CYS
30
n
20
CYS
30
A
THR
31
n
21
THR
31
A
LYS
32
n
22
LYS
32
A
CYS
33
n
23
CYS
33
A
HIS
34
n
24
HIS
34
A
LYS
35
n
25
LYS
35
A
GLY
36
n
26
GLY
36
A
THR
37
n
27
THR
37
A
TYR
38
n
28
TYR
38
A
LEU
39
n
29
LEU
39
A
TYR
40
n
30
TYR
40
A
ASN
41
n
31
ASN
41
A
ASP
42
n
32
ASP
42
A
CYS
43
n
33
CYS
43
A
PRO
44
n
34
PRO
44
A
GLY
45
n
35
GLY
45
A
PRO
46
n
36
PRO
46
A
GLY
47
n
37
GLY
47
A
GLN
48
n
38
GLN
48
A
ASP
49
n
39
ASP
49
A
THR
50
n
40
THR
50
A
ASP
51
n
41
ASP
51
A
CYS
52
n
42
CYS
52
A
ARG
53
n
43
ARG
53
A
GLU
54
n
44
GLU
54
A
CYS
55
n
45
CYS
55
A
GLU
56
n
46
GLU
56
A
SER
57
n
47
SER
57
A
GLY
58
n
48
GLY
58
A
SER
59
n
49
SER
59
A
PHE
60
n
50
PHE
60
A
THR
61
n
51
THR
61
A
ALA
62
n
52
ALA
62
A
SER
63
n
53
SER
63
A
GLU
64
n
54
GLU
64
A
ASN
65
n
55
ASN
65
A
HIS
66
n
56
HIS
66
A
LEU
67
n
57
LEU
67
A
ARG
68
n
58
ARG
68
A
HIS
69
n
59
HIS
69
A
CYS
70
n
60
CYS
70
A
LEU
71
n
61
LEU
71
A
SER
72
n
62
SER
72
A
CYS
73
n
63
CYS
73
A
SER
74
n
64
SER
74
A
LYS
75
n
65
LYS
75
A
CYS
76
n
66
CYS
76
A
ARG
77
n
67
ARG
77
A
LYS
78
n
68
LYS
78
A
GLU
79
n
69
GLU
79
A
MET
80
n
70
MET
80
A
GLY
81
n
71
GLY
81
A
GLN
82
n
72
GLN
82
A
VAL
83
n
73
VAL
83
A
GLU
84
n
74
GLU
84
A
ILE
85
n
75
ILE
85
A
SER
86
n
76
SER
86
A
SER
87
n
77
SER
87
A
CYS
88
n
78
CYS
88
A
THR
89
n
79
THR
89
A
VAL
90
n
80
VAL
90
A
ASP
91
n
81
ASP
91
A
ARG
92
n
82
ARG
92
A
ASP
93
n
83
ASP
93
A
THR
94
n
84
THR
94
A
VAL
95
n
85
VAL
95
A
CYS
96
n
86
CYS
96
A
GLY
97
n
87
GLY
97
A
CYS
98
n
88
CYS
98
A
ARG
99
n
89
ARG
99
A
LYS
100
n
90
LYS
100
A
ASN
101
n
91
ASN
101
A
GLN
102
n
92
GLN
102
A
TYR
103
n
93
TYR
103
A
ARG
104
n
94
ARG
104
A
HIS
105
n
95
HIS
105
A
TYR
106
n
96
TYR
106
A
TRP
107
n
97
TRP
107
A
SER
108
n
98
SER
108
A
GLU
109
n
99
GLU
109
A
ASN
110
n
100
ASN
110
A
LEU
111
n
101
LEU
111
A
PHE
112
n
102
PHE
112
A
GLN
113
n
103
GLN
113
A
CYS
114
n
104
CYS
114
A
PHE
115
n
105
PHE
115
A
ASN
116
n
106
ASN
116
A
CYS
117
n
107
CYS
117
A
SER
118
n
108
SER
118
A
LEU
119
n
109
LEU
119
A
CYS
120
n
110
CYS
120
A
LEU
121
n
111
LEU
121
A
ASN
122
n
112
ASN
122
A
GLY
123
n
113
GLY
123
A
THR
124
n
114
THR
124
A
VAL
125
n
115
VAL
125
A
HIS
126
n
116
HIS
126
A
LEU
127
n
117
LEU
127
A
SER
128
n
118
SER
128
A
CYS
129
n
119
CYS
129
A
GLN
130
n
120
GLN
130
A
GLU
131
n
121
GLU
131
A
LYS
132
n
122
LYS
132
A
GLN
133
n
123
GLN
133
A
ASN
134
n
124
ASN
134
A
THR
135
n
125
THR
135
A
VAL
136
n
126
VAL
136
A
CYS
137
n
127
CYS
137
A
THR
138
n
128
THR
138
A
CYS
139
n
129
CYS
139
A
HIS
140
n
130
HIS
140
A
ALA
141
n
131
ALA
141
A
GLY
142
n
132
GLY
142
A
PHE
143
n
133
PHE
143
A
PHE
144
n
134
PHE
144
A
LEU
145
n
135
LEU
145
A
ARG
146
n
136
ARG
146
A
GLU
147
n
137
GLU
147
A
ASN
148
n
138
ASN
148
A
GLU
149
n
139
GLU
149
A
CYS
150
n
140
CYS
150
A
n
141
151
A
n
142
152
A
n
143
153
A
n
144
154
A
n
145
155
A
n
146
156
A
n
147
157
A
n
148
158
A
n
149
159
A
n
150
160
A
n
151
161
A
n
152
162
A
n
153
163
A
n
154
164
A
n
155
165
A
n
156
166
A
n
157
167
A
n
158
168
A
n
159
169
A
n
160
170
A
n
161
171
A
n
162
172
A
n
1
11
B
n
2
12
B
n
3
13
B
VAL
14
n
4
VAL
14
B
CYS
15
n
5
CYS
15
B
PRO
16
n
6
PRO
16
B
GLN
17
n
7
GLN
17
B
GLY
18
n
8
GLY
18
B
LYS
19
n
9
LYS
19
B
TYR
20
n
10
TYR
20
B
ILE
21
n
11
ILE
21
B
HIS
22
n
12
HIS
22
B
PRO
23
n
13
PRO
23
B
GLN
24
n
14
GLN
24
B
ASN
25
n
15
ASN
25
B
ASN
26
n
16
ASN
26
B
SER
27
n
17
SER
27
B
ILE
28
n
18
ILE
28
B
CYS
29
n
19
CYS
29
B
CYS
30
n
20
CYS
30
B
THR
31
n
21
THR
31
B
LYS
32
n
22
LYS
32
B
CYS
33
n
23
CYS
33
B
HIS
34
n
24
HIS
34
B
LYS
35
n
25
LYS
35
B
GLY
36
n
26
GLY
36
B
THR
37
n
27
THR
37
B
TYR
38
n
28
TYR
38
B
LEU
39
n
29
LEU
39
B
TYR
40
n
30
TYR
40
B
ASN
41
n
31
ASN
41
B
ASP
42
n
32
ASP
42
B
CYS
43
n
33
CYS
43
B
PRO
44
n
34
PRO
44
B
GLY
45
n
35
GLY
45
B
PRO
46
n
36
PRO
46
B
GLY
47
n
37
GLY
47
B
GLN
48
n
38
GLN
48
B
ASP
49
n
39
ASP
49
B
THR
50
n
40
THR
50
B
ASP
51
n
41
ASP
51
B
CYS
52
n
42
CYS
52
B
ARG
53
n
43
ARG
53
B
GLU
54
n
44
GLU
54
B
CYS
55
n
45
CYS
55
B
GLU
56
n
46
GLU
56
B
SER
57
n
47
SER
57
B
GLY
58
n
48
GLY
58
B
SER
59
n
49
SER
59
B
PHE
60
n
50
PHE
60
B
THR
61
n
51
THR
61
B
ALA
62
n
52
ALA
62
B
SER
63
n
53
SER
63
B
GLU
64
n
54
GLU
64
B
ASN
65
n
55
ASN
65
B
HIS
66
n
56
HIS
66
B
LEU
67
n
57
LEU
67
B
ARG
68
n
58
ARG
68
B
HIS
69
n
59
HIS
69
B
CYS
70
n
60
CYS
70
B
LEU
71
n
61
LEU
71
B
SER
72
n
62
SER
72
B
CYS
73
n
63
CYS
73
B
SER
74
n
64
SER
74
B
LYS
75
n
65
LYS
75
B
CYS
76
n
66
CYS
76
B
ARG
77
n
67
ARG
77
B
LYS
78
n
68
LYS
78
B
GLU
79
n
69
GLU
79
B
MET
80
n
70
MET
80
B
GLY
81
n
71
GLY
81
B
GLN
82
n
72
GLN
82
B
VAL
83
n
73
VAL
83
B
GLU
84
n
74
GLU
84
B
ILE
85
n
75
ILE
85
B
SER
86
n
76
SER
86
B
SER
87
n
77
SER
87
B
CYS
88
n
78
CYS
88
B
THR
89
n
79
THR
89
B
VAL
90
n
80
VAL
90
B
ASP
91
n
81
ASP
91
B
ARG
92
n
82
ARG
92
B
ASP
93
n
83
ASP
93
B
THR
94
n
84
THR
94
B
VAL
95
n
85
VAL
95
B
CYS
96
n
86
CYS
96
B
GLY
97
n
87
GLY
97
B
CYS
98
n
88
CYS
98
B
ARG
99
n
89
ARG
99
B
LYS
100
n
90
LYS
100
B
ASN
101
n
91
ASN
101
B
GLN
102
n
92
GLN
102
B
TYR
103
n
93
TYR
103
B
ARG
104
n
94
ARG
104
B
HIS
105
n
95
HIS
105
B
TYR
106
n
96
TYR
106
B
TRP
107
n
97
TRP
107
B
SER
108
n
98
SER
108
B
GLU
109
n
99
GLU
109
B
ASN
110
n
100
ASN
110
B
LEU
111
n
101
LEU
111
B
PHE
112
n
102
PHE
112
B
GLN
113
n
103
GLN
113
B
CYS
114
n
104
CYS
114
B
PHE
115
n
105
PHE
115
B
ASN
116
n
106
ASN
116
B
CYS
117
n
107
CYS
117
B
SER
118
n
108
SER
118
B
LEU
119
n
109
LEU
119
B
CYS
120
n
110
CYS
120
B
LEU
121
n
111
LEU
121
B
ASN
122
n
112
ASN
122
B
GLY
123
n
113
GLY
123
B
THR
124
n
114
THR
124
B
VAL
125
n
115
VAL
125
B
HIS
126
n
116
HIS
126
B
LEU
127
n
117
LEU
127
B
SER
128
n
118
SER
128
B
CYS
129
n
119
CYS
129
B
GLN
130
n
120
GLN
130
B
GLU
131
n
121
GLU
131
B
LYS
132
n
122
LYS
132
B
GLN
133
n
123
GLN
133
B
ASN
134
n
124
ASN
134
B
THR
135
n
125
THR
135
B
VAL
136
n
126
VAL
136
B
CYS
137
n
127
CYS
137
B
THR
138
n
128
THR
138
B
CYS
139
n
129
CYS
139
B
HIS
140
n
130
HIS
140
B
ALA
141
n
131
ALA
141
B
GLY
142
n
132
GLY
142
B
PHE
143
n
133
PHE
143
B
PHE
144
n
134
PHE
144
B
LEU
145
n
135
LEU
145
B
ARG
146
n
136
ARG
146
B
GLU
147
n
137
GLU
147
B
ASN
148
n
138
ASN
148
B
GLU
149
n
139
GLU
149
B
CYS
150
n
140
CYS
150
B
VAL
151
n
141
VAL
151
B
SER
152
n
142
SER
152
B
CYS
153
n
143
CYS
153
B
SER
154
n
144
SER
154
B
ASN
155
n
145
ASN
155
B
n
146
156
B
n
147
157
B
n
148
158
B
n
149
159
B
n
150
160
B
n
151
161
B
n
152
162
B
n
153
163
B
n
154
164
B
n
155
165
B
n
156
166
B
n
157
167
B
n
158
168
B
n
159
169
B
n
160
170
B
n
161
171
B
n
162
172
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
20
A
N
TYR
10
A
O
CYS
30
A
O
CYS
20
A
N
TYR
40
A
N
TYR
30
A
O
ASP
51
A
O
ASP
41
A
N
PHE
60
A
N
PHE
50
A
O
LEU
71
A
O
LEU
61
A
N
SER
86
A
N
SER
76
A
O
VAL
95
A
O
VAL
85
A
N
HIS
105
A
N
HIS
95
A
O
GLN
113
A
O
GLN
103
A
N
HIS
126
A
N
HIS
116
A
O
VAL
136
A
O
VAL
126
B
N
TYR
20
B
N
TYR
10
B
O
CYS
30
B
O
CYS
20
B
N
TYR
38
B
N
TYR
28
B
O
ARG
53
B
O
ARG
43
B
O
PHE
60
B
O
PHE
50
B
N
LEU
71
B
N
LEU
61
B
N
ILE
85
B
N
ILE
75
B
O
VAL
95
B
O
VAL
85
B
N
HIS
105
B
N
HIS
95
B
O
GLN
113
B
O
GLN
103
B
O
THR
124
B
O
THR
114
B
N
THR
138
B
N
THR
128
B
O
ARG
146
B
O
ARG
136
B
N
GLU
149
B
N
GLU
139
1
A
VAL
151
A
VAL
141
1
Y
1
A
SER
152
A
SER
142
1
Y
1
A
CYS
153
A
CYS
143
1
Y
1
A
SER
154
A
SER
144
1
Y
1
A
ASN
155
A
ASN
145
1
Y
1
A
CYS
156
A
CYS
146
1
Y
1
A
LYS
157
A
LYS
147
1
Y
1
A
LYS
158
A
LYS
148
1
Y
1
A
SER
159
A
SER
149
1
Y
1
A
LEU
160
A
LEU
150
1
Y
1
A
GLU
161
A
GLU
151
1
Y
1
A
CYS
162
A
CYS
152
1
Y
1
A
THR
163
A
THR
153
1
Y
1
A
LYS
164
A
LYS
154
1
Y
1
A
LEU
165
A
LEU
155
1
Y
1
A
CYS
166
A
CYS
156
1
Y
1
A
LEU
167
A
LEU
157
1
Y
1
A
PRO
168
A
PRO
158
1
Y
1
A
GLN
169
A
GLN
159
1
Y
1
A
ILE
170
A
ILE
160
1
Y
1
A
GLU
171
A
GLU
161
1
Y
1
A
ASN
172
A
ASN
162
1
Y
1
B
MET
11
B
MET
1
1
Y
1
B
ASP
12
B
ASP
2
1
Y
1
B
SER
13
B
SER
3
1
Y
1
B
CYS
156
B
CYS
146
1
Y
1
B
LYS
157
B
LYS
147
1
Y
1
B
LYS
158
B
LYS
148
1
Y
1
B
SER
159
B
SER
149
1
Y
1
B
LEU
160
B
LEU
150
1
Y
1
B
GLU
161
B
GLU
151
1
Y
1
B
CYS
162
B
CYS
152
1
Y
1
B
THR
163
B
THR
153
1
Y
1
B
LYS
164
B
LYS
154
1
Y
1
B
LEU
165
B
LEU
155
1
Y
1
B
CYS
166
B
CYS
156
1
Y
1
B
LEU
167
B
LEU
157
1
Y
1
B
PRO
168
B
PRO
158
1
Y
1
B
GLN
169
B
GLN
159
1
Y
1
B
ILE
170
B
ILE
160
1
Y
1
B
GLU
171
B
GLU
161
1
Y
1
B
ASN
172
B
ASN
162
1
Y
1
A
A
MET
ASP
11
12
-114.57
1
A
A
ALA
SER
62
63
-145.10
1
A
A
LEU
CYS
119
120
-145.73
1
A
A
GLY
PHE
142
143
149.77
1
B
B
PHE
THR
60
61
146.42
1
B
B
ILE
SER
85
86
149.70
1
B
B
TRP
SER
107
108
-34.10
1
B
B
SER
ASN
154
155
117.50
1
A
TYR
20
0.137
SIDE CHAIN
1
A
TYR
106
0.181
SIDE CHAIN
1
B
TYR
38
0.090
SIDE CHAIN
1
B
TYR
40
0.138
SIDE CHAIN
1
B
ARG
99
0.089
SIDE CHAIN
1
-3.89
0.60
121.00
117.11
A
A
A
CB
CG
CD2
TYR
TYR
TYR
20
20
20
N
1
-3.60
0.60
121.00
117.40
A
A
A
CB
CG
CD2
TYR
TYR
TYR
38
38
38
N
1
-4.27
0.70
120.80
116.53
A
A
A
CB
CG
CD2
PHE
PHE
PHE
112
112
112
N
1
-4.73
0.70
120.80
116.07
A
A
A
CB
CG
CD2
PHE
PHE
PHE
115
115
115
N
1
-16.86
2.50
121.70
104.84
A
A
A
C
N
CA
PHE
ASN
ASN
115
116
116
Y
1
-3.98
0.60
121.00
117.02
B
B
B
CB
CG
CD2
TYR
TYR
TYR
40
40
40
N
1
-15.33
2.50
121.70
106.37
B
B
B
C
N
CA
GLY
CYS
CYS
97
98
98
Y
1
A
A
CG
CD2
HIS
HIS
22
22
0.055
0.009
1.354
1.409
N
1
A
A
C
N
THR
ALA
61
62
0.151
0.023
1.336
1.487
Y
1
A
ASP
12
68.20
103.04
1
A
SER
13
-171.53
-165.52
1
A
VAL
14
-137.40
-109.26
1
A
CYS
15
-49.28
165.11
1
A
GLN
17
-55.28
108.47
1
A
GLN
24
-106.21
-81.54
1
A
ASN
26
-73.03
23.77
1
A
SER
27
-145.09
38.86
1
A
LEU
39
-59.02
95.94
1
A
PRO
46
-57.68
44.00
1
A
ALA
62
-34.54
-86.91
1
A
SER
63
-167.61
-139.72
1
A
GLU
64
-39.16
93.68
1
A
HIS
66
-102.22
74.67
1
A
CYS
73
-45.99
-177.62
1
A
GLU
79
-63.12
11.27
1
A
MET
80
-158.88
24.81
1
A
VAL
90
24.92
-46.68
1
A
CYS
96
-118.08
-168.37
1
A
TYR
106
-60.63
82.63
1
A
SER
108
78.54
48.72
1
A
GLU
109
59.78
2.09
1
A
ASN
110
-163.24
-42.44
1
A
CYS
120
-51.51
105.57
1
A
ASN
122
73.67
-5.35
1
A
HIS
126
-95.43
-78.67
1
A
SER
128
-49.26
155.31
1
A
GLU
131
-22.54
-50.50
1
A
HIS
140
-82.84
48.44
1
A
ALA
141
171.95
75.67
1
A
PHE
143
-86.37
-152.79
1
A
PHE
144
-151.51
66.57
1
A
LEU
145
25.90
74.52
1
A
GLU
147
63.57
-76.58
1
A
ASN
148
-162.52
69.16
1
A
GLU
149
-152.44
-108.67
1
B
PRO
16
-64.47
-165.67
1
B
ASN
26
-60.74
44.91
1
B
SER
27
-153.16
7.73
1
B
CYS
33
-57.12
-171.49
1
B
HIS
66
-147.36
49.68
1
B
GLU
79
-49.24
-18.20
1
B
THR
89
-163.53
90.75
1
B
VAL
90
45.28
-46.48
1
B
ARG
99
-48.27
155.64
1
B
LYS
100
-21.33
80.25
1
B
TYR
106
-68.93
98.78
1
B
ASN
122
46.61
74.14
1
B
VAL
125
-38.83
120.66
1
B
HIS
126
-100.19
-87.03
1
B
GLU
147
61.77
-85.24
1
B
CYS
153
-168.97
-148.76
0.274
0.275
2.90
10.0
8247
1
2.0
2.90
10.0
0
2764
31
0
2733
0.013
3.1
2.9
35.0
1FT4
9191
0.093
1
17.0
88.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
EPMR
refinement
X-PLOR
3.851
SOLUBLE TUMOR NECROSIS FACTOR RECEPTOR 1
PHOTOCHEMICALLY-ENHANCED BINDING OF SMALL MOLECULES TO THE TUMOR NECROSIS FACTOR RECEPTOR-1
1
N
N
1
N
N
2
N
N
A
ARG
77
A
ARG
67
HELX_P
A
MET
80
A
MET
70
5
1
4
B
ARG
77
B
ARG
67
HELX_P
B
GLY
81
B
GLY
71
5
2
5
B
CYS
98
B
CYS
88
HELX_P
B
GLN
102
B
GLN
92
5
3
5
B
ALA
141
B
ALA
131
HELX_P
B
PHE
143
B
PHE
133
5
4
3
disulf
2.030
A
CYS
15
A
SG
CYS
5
1_555
A
CYS
29
A
SG
CYS
19
1_555
disulf
2.028
A
CYS
30
A
SG
CYS
20
1_555
A
CYS
43
A
SG
CYS
33
1_555
disulf
2.032
A
CYS
33
A
SG
CYS
23
1_555
A
CYS
52
A
SG
CYS
42
1_555
disulf
2.030
A
CYS
55
A
SG
CYS
45
1_555
A
CYS
70
A
SG
CYS
60
1_555
disulf
2.029
A
CYS
73
A
SG
CYS
63
1_555
A
CYS
88
A
SG
CYS
78
1_555
disulf
2.030
A
CYS
76
A
SG
CYS
66
1_555
A
CYS
96
A
SG
CYS
86
1_555
disulf
2.029
A
CYS
98
A
SG
CYS
88
1_555
A
CYS
114
A
SG
CYS
104
1_555
disulf
2.029
A
CYS
117
A
SG
CYS
107
1_555
A
CYS
129
A
SG
CYS
119
1_555
disulf
2.030
A
CYS
120
A
SG
CYS
110
1_555
A
CYS
137
A
SG
CYS
127
1_555
disulf
2.031
A
CYS
139
A
SG
CYS
129
1_555
A
CYS
150
A
SG
CYS
140
1_555
disulf
2.032
B
CYS
15
B
SG
CYS
5
1_555
B
CYS
29
B
SG
CYS
19
1_555
disulf
2.029
B
CYS
30
B
SG
CYS
20
1_555
B
CYS
43
B
SG
CYS
33
1_555
disulf
2.029
B
CYS
33
B
SG
CYS
23
1_555
B
CYS
52
B
SG
CYS
42
1_555
disulf
2.028
B
CYS
55
B
SG
CYS
45
1_555
B
CYS
70
B
SG
CYS
60
1_555
disulf
2.029
B
CYS
73
B
SG
CYS
63
1_555
B
CYS
88
B
SG
CYS
78
1_555
disulf
2.032
B
CYS
76
B
SG
CYS
66
1_555
B
CYS
96
B
SG
CYS
86
1_555
disulf
2.031
B
CYS
98
B
SG
CYS
88
1_555
B
CYS
114
B
SG
CYS
104
1_555
disulf
2.030
B
CYS
117
B
SG
CYS
107
1_555
B
CYS
129
B
SG
CYS
119
1_555
disulf
2.027
B
CYS
120
B
SG
CYS
110
1_555
B
CYS
137
B
SG
CYS
127
1_555
disulf
2.031
B
CYS
139
B
SG
CYS
129
1_555
B
CYS
150
B
SG
CYS
140
1_555
covale
1.496
A
703
962
C
C1
703
1_555
A
ALA
62
A
N
ALA
52
1_555
SIGNALING PROTEIN
BINDING PROTEIN, CYTOKINE, SIGNALING PROTEIN
A
LYS
100
A
LYS
90
1
A
ASN
101
A
ASN
91
-17.07
B
SER
57
B
SER
47
1
B
GLY
58
B
GLY
48
1.68
B
GLU
109
B
GLU
99
1
B
ASN
110
B
ASN
100
13.54
TNR1A_HUMAN
UNP
1
41
P19438
DSVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVD
RDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIE
N
41
201
1FT4
12
172
P19438
A
1
2
162
41
201
1FT4
12
172
P19438
B
1
2
162
1
cloning artifact
MET
11
1FT4
A
P19438
UNP
1
2
cloning artifact
MET
11
1FT4
B
P19438
UNP
1
2
2
2
2
2
2
2
2
2
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
19
A
LYS
9
A
ILE
21
A
ILE
11
A
CYS
29
A
CYS
19
A
THR
31
A
THR
21
A
THR
37
A
THR
27
A
ASN
41
A
ASN
31
A
ASP
51
A
ASP
41
A
GLU
54
A
GLU
44
A
SER
59
A
SER
49
A
PHE
60
A
PHE
50
A
LEU
71
A
LEU
61
A
SER
72
A
SER
62
A
GLN
82
A
GLN
72
A
SER
86
A
SER
76
A
VAL
95
A
VAL
85
A
CYS
98
A
CYS
88
A
GLN
102
A
GLN
92
A
HIS
105
A
HIS
95
A
GLN
113
A
GLN
103
A
ASN
116
A
ASN
106
A
GLY
123
A
GLY
113
A
LEU
127
A
LEU
117
A
VAL
136
A
VAL
126
A
CYS
139
A
CYS
129
B
LYS
19
B
LYS
9
B
ILE
21
B
ILE
11
B
CYS
29
B
CYS
19
B
THR
31
B
THR
21
B
THR
37
B
THR
27
B
LEU
39
B
LEU
29
B
CYS
52
B
CYS
42
B
GLU
54
B
GLU
44
B
SER
59
B
SER
49
B
PHE
60
B
PHE
50
B
LEU
71
B
LEU
61
B
SER
72
B
SER
62
B
VAL
83
B
VAL
73
B
SER
86
B
SER
76
B
VAL
95
B
VAL
85
B
GLY
97
B
GLY
87
B
TYR
103
B
TYR
93
B
HIS
105
B
HIS
95
B
GLN
113
B
GLN
103
B
PHE
115
B
PHE
105
B
GLY
123
B
GLY
113
B
VAL
125
B
VAL
115
B
CYS
137
B
CYS
127
B
CYS
139
B
CYS
129
B
PHE
144
B
PHE
134
B
ARG
146
B
ARG
136
B
GLU
149
B
GLU
139
B
VAL
151
B
VAL
141
BINDING SITE FOR RESIDUE 703 A 962
Software
5
A
THR
61
A
THR
51
5
1_555
A
ALA
62
A
ALA
52
5
1_555
A
LEU
67
A
LEU
57
5
1_555
A
LEU
71
A
LEU
61
5
1_555
B
LEU
71
B
LEU
61
5
5_545
92
tetragonal
P 41 21 2