1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liew, C.K. Kowalski, K. Fox, A.H. Newton, A. Sharpe, B.K. Crossley, M. Mackay, J.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK Structure Fold.Des. FODEFH 1263 0969-2126 8 1157 1166 10.1016/S0969-2126(00)00527-X 11080638 Solution structures of two CCHC zinc fingers from the FOG family protein U-shaped that mediate protein-protein interactions. 2000 10.2210/pdb1fu9/pdb pdb_00001fu9 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4174.862 U-SHAPED TRANSCRIPTIONAL COFACTOR NINTH ZINC-FINGER DOMAIN 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no GSAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP GSAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n fruit fly Drosophila Escherichia sample 7227 Drosophila melanogaster 562 Escherichia coli PGEX-2T database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-10-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1FV5 contains the first zinc finger of U-shaped RCSB Y RCSB 2000-09-14 REL REL ZN ZINC ION This structure was determined using a combination of 2D homonuclear and 3D 15N-heteronuclear techniques structures with the lowest energy 500 20 2D NOESY HNHA HNHB 0.6mM ZnSO4 5.0 ambient 293 K 0.3mM ZnSO4 5.0 ambient 293 K The structures are based on a total of 535 restraints, 506 are NOE-derived distance constraints, 29 are dihedral angle restraints molecular dynamics simulated annealing torsion angle dynamics 1 lowest energy 0.4mM U-shaped Finger 9; 0.6mM ZnSO4; 0.6mM TCEP; 95% H2O, 5% D2O 95% H2O/5% D2O 0.2mM U-shaped Finger 9 U-15N; 0.3mM ZnSO4; 0.3mM TCEP; 95% D2O, 5% H2O 95% H2O/5% D2O Bruker processing XwinNMR 2.1 Bartels et al data analysis XEASY 1.3.13 Guntert et al structure solution DYANA 1.5 Brunger et al refinement CNS 0.5 600 Bruker DRX ZN 37 2 ZN ZN 37 A GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A ALA 3 n 3 ALA 3 A ALA 4 n 4 ALA 4 A GLU 5 n 5 GLU 5 A VAL 6 n 6 VAL 6 A MET 7 n 7 MET 7 A LYS 8 n 8 LYS 8 A LYS 9 n 9 LYS 9 A TYR 10 n 10 TYR 10 A CYS 11 n 11 CYS 11 A SER 12 n 12 SER 12 A THR 13 n 13 THR 13 A CYS 14 n 14 CYS 14 A ASP 15 n 15 ASP 15 A ILE 16 n 16 ILE 16 A SER 17 n 17 SER 17 A PHE 18 n 18 PHE 18 A ASN 19 n 19 ASN 19 A TYR 20 n 20 TYR 20 A VAL 21 n 21 VAL 21 A LYS 22 n 22 LYS 22 A THR 23 n 23 THR 23 A TYR 24 n 24 TYR 24 A LEU 25 n 25 LEU 25 A ALA 26 n 26 ALA 26 A HIS 27 n 27 HIS 27 A LYS 28 n 28 LYS 28 A GLN 29 n 29 GLN 29 A PHE 30 n 30 PHE 30 A TYR 31 n 31 TYR 31 A CYS 32 n 32 CYS 32 A LYS 33 n 33 LYS 33 A ASN 34 n 34 ASN 34 A LYS 35 n 35 LYS 35 A PRO 36 n 36 PRO 36 A author_defined_assembly 1 monomeric A CYS 11 A SG CYS 11 1_555 A ZN 37 B ZN ZN 1_555 A CYS 14 A SG CYS 14 1_555 109.9 A CYS 11 A SG CYS 11 1_555 A ZN 37 B ZN ZN 1_555 A HIS 27 A NE2 HIS 27 1_555 110.9 A CYS 14 A SG CYS 14 1_555 A ZN 37 B ZN ZN 1_555 A HIS 27 A NE2 HIS 27 1_555 108.3 A CYS 11 A SG CYS 11 1_555 A ZN 37 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 109.2 A CYS 14 A SG CYS 14 1_555 A ZN 37 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 109.7 A HIS 27 A NE2 HIS 27 1_555 A ZN 37 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 108.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ALA 4 -73.65 -76.75 1 A GLU 5 59.57 85.29 1 A MET 7 -174.98 69.60 1 A LYS 8 -94.93 47.51 1 A LYS 9 -158.02 43.93 1 A TYR 10 -165.11 109.34 1 A ASP 15 72.42 50.53 1 A PHE 30 -150.10 19.35 1 A LYS 33 -98.32 30.49 2 A ALA 3 61.08 93.69 2 A ALA 4 -59.56 -75.59 2 A GLU 5 -43.79 104.44 2 A MET 7 62.07 70.29 2 A TYR 10 -165.13 102.33 2 A ASP 15 74.15 42.51 2 A PHE 30 -149.37 18.15 2 A LYS 33 -98.53 35.44 3 A MET 7 -151.87 65.42 3 A LYS 8 -95.02 48.71 3 A LYS 9 -150.63 65.57 3 A TYR 10 -165.12 115.80 3 A ASP 15 73.73 53.60 3 A PHE 30 -148.44 16.74 3 A LYS 35 43.44 72.05 4 A ALA 3 -175.13 95.43 4 A GLU 5 59.75 165.61 4 A LYS 8 -94.40 48.13 4 A TYR 10 -165.00 109.49 4 A ASP 15 73.96 45.66 4 A PHE 30 -151.34 19.15 5 A ALA 4 -175.32 -76.15 5 A GLU 5 59.94 97.21 5 A MET 7 -105.18 61.79 5 A LYS 9 -154.02 53.73 5 A TYR 10 -165.23 108.92 5 A ASP 15 74.56 39.49 5 A PHE 30 -151.21 19.52 6 A ALA 3 -175.03 36.84 6 A ALA 4 -60.04 -75.55 6 A GLU 5 -43.54 103.70 6 A LYS 8 -95.07 48.79 6 A LYS 9 -151.65 67.32 6 A TYR 10 -165.06 115.76 6 A ASP 15 74.48 46.57 6 A PHE 30 -150.65 19.72 6 A ASN 34 -102.86 59.23 6 A LYS 35 60.20 159.17 7 A SER 2 -66.45 -170.08 7 A ALA 3 60.71 93.38 7 A GLU 5 -43.84 164.26 7 A MET 7 60.33 72.52 7 A LYS 8 -95.25 44.21 7 A LYS 9 -144.83 43.72 7 A TYR 10 -165.21 106.55 7 A ASP 15 74.67 41.77 7 A PHE 30 -149.36 18.43 7 A LYS 33 -98.31 35.14 8 A SER 2 -62.25 -173.10 8 A ALA 3 -175.51 95.93 8 A GLU 5 -45.61 94.77 8 A MET 7 60.29 87.58 8 A LYS 9 -153.52 41.04 8 A TYR 10 -165.28 107.01 8 A ASP 15 75.18 48.33 8 A PHE 30 -147.78 17.34 9 A SER 2 -62.03 -169.49 9 A ALA 3 -154.98 86.20 9 A ALA 4 -65.55 78.47 9 A GLU 5 60.37 163.36 9 A MET 7 65.88 79.18 9 A LYS 8 -94.98 46.22 9 A LYS 9 62.22 70.42 9 A TYR 10 -165.11 107.27 9 A ASP 15 70.83 50.57 9 A PHE 30 -151.50 20.91 10 A SER 2 60.49 160.35 10 A ALA 3 -155.04 30.17 10 A GLU 5 56.66 84.51 10 A MET 7 -105.17 61.65 10 A LYS 8 -93.53 49.29 10 A TYR 10 -165.23 112.37 10 A PHE 30 -147.55 17.02 11 A ALA 3 60.59 93.42 11 A ALA 4 -61.66 -71.22 11 A GLU 5 60.59 162.75 11 A MET 7 -105.15 61.67 11 A LYS 8 -95.02 49.35 11 A LYS 9 -163.57 54.42 11 A TYR 10 -165.08 108.35 11 A ASP 15 83.04 43.73 11 A PHE 30 -144.59 14.61 11 A LYS 35 60.58 85.39 12 A GLU 5 62.92 145.96 12 A LYS 8 -95.11 48.22 12 A LYS 9 -147.24 52.97 12 A TYR 10 -165.09 109.57 12 A ASP 15 73.21 42.56 12 A PHE 30 -154.30 21.76 12 A ASN 34 -112.73 75.98 12 A LYS 35 61.50 154.24 13 A SER 2 -174.11 -170.14 13 A ALA 4 -173.68 106.92 13 A GLU 5 -43.71 96.16 13 A MET 7 62.49 71.04 13 A LYS 8 -94.58 47.63 13 A TYR 10 -165.12 108.49 13 A ASP 15 74.22 41.40 13 A PHE 30 -147.55 17.11 13 A LYS 35 -161.61 55.32 14 A ALA 4 -151.61 84.42 14 A GLU 5 63.49 127.26 14 A MET 7 -105.12 61.50 14 A LYS 8 -140.43 46.59 14 A LYS 9 -176.93 74.48 14 A ASP 15 73.90 52.54 14 A PHE 30 -147.28 16.52 14 A LYS 33 -97.23 34.39 14 A ASN 34 -152.72 78.97 15 A ALA 4 59.66 91.96 15 A GLU 5 49.54 96.16 15 A MET 7 -170.88 68.87 15 A LYS 8 -94.76 48.09 15 A LYS 9 -175.13 65.26 15 A TYR 10 -165.14 109.16 15 A ASP 15 75.37 40.00 15 A PHE 30 -145.57 15.76 16 A GLU 5 63.27 123.49 16 A MET 7 -172.28 66.16 16 A LYS 8 -95.04 48.64 16 A TYR 10 -165.06 119.49 16 A ASP 15 73.67 51.67 16 A PHE 30 -150.73 19.32 16 A ASN 34 -90.63 51.46 16 A LYS 35 60.13 85.68 17 A SER 2 58.60 -172.01 17 A ALA 3 61.13 93.88 17 A LYS 8 -94.97 49.39 17 A LYS 9 -96.96 41.06 17 A ASP 15 76.25 53.38 17 A PHE 30 -148.74 17.33 17 A ASN 34 -117.62 69.79 17 A LYS 35 43.40 70.07 18 A SER 2 60.66 -176.46 18 A ALA 3 -155.03 80.90 18 A ALA 4 -108.21 -61.78 18 A GLU 5 60.09 101.60 18 A LYS 8 -140.18 45.18 18 A TYR 10 -165.26 113.49 18 A ASP 15 74.46 53.70 18 A PHE 30 -152.71 21.32 18 A LYS 33 -98.32 35.21 18 A ASN 34 -157.97 86.74 18 A LYS 35 -175.85 81.81 19 A ALA 3 -171.67 36.76 19 A ALA 4 66.29 -74.86 19 A GLU 5 61.29 114.07 19 A MET 7 -151.05 68.86 19 A LYS 8 -95.09 48.02 19 A ASP 15 74.25 51.39 19 A PHE 30 -149.02 18.13 19 A ASN 34 -107.15 73.56 20 A ALA 3 -155.29 52.05 20 A ALA 4 64.07 -79.63 20 A GLU 5 48.28 91.41 20 A MET 7 60.08 68.05 20 A LYS 8 -95.13 48.22 20 A ASP 15 74.19 50.61 20 A PHE 30 -147.67 17.50 20 A ASN 34 52.22 77.93 SOLUTION STRUCTURE OF THE NINTH ZINC-FINGER DOMAIN OF THE U-SHAPED TRANSCRIPTION FACTOR 1 N N 2 N N A TYR 20 A TYR 20 HELX_P A TYR 31 A TYR 31 1 1 12 metalc 2.303 A CYS 11 A SG CYS 11 1_555 A ZN 37 B ZN ZN 1_555 metalc 2.301 A CYS 14 A SG CYS 14 1_555 A ZN 37 B ZN ZN 1_555 metalc 2.001 A HIS 27 A NE2 HIS 27 1_555 A ZN 37 B ZN ZN 1_555 metalc 2.300 A CYS 32 A SG CYS 32 1_555 A ZN 37 B ZN ZN 1_555 TRANSCRIPTION zinc-finger, beta-hairpin + alpha-helix, TRANSCRIPTION USH_DROME UNP 1 587 Q9VPQ6 AAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP 587 620 1FU9 3 36 Q9VPQ6 A 1 3 36 1 cloning artifact GLY 1 1FU9 A Q9VPQ6 UNP 1 1 cloning artifact SER 2 1FU9 A Q9VPQ6 UNP 2 BINDING SITE FOR RESIDUE ZN A 37 A ZN 37 Software 4 A CYS 11 A CYS 11 4 1_555 A CYS 14 A CYS 14 4 1_555 A HIS 27 A HIS 27 4 1_555 A CYS 32 A CYS 32 4 1_555 1 P 1