1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Liew, C.K.
Kowalski, K.
Fox, A.H.
Newton, A.
Sharpe, B.K.
Crossley, M.
Mackay, J.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Structure Fold.Des.
FODEFH
1263
0969-2126
8
1157
1166
10.1016/S0969-2126(00)00527-X
11080638
Solution structures of two CCHC zinc fingers from the FOG family protein U-shaped that mediate protein-protein interactions.
2000
10.2210/pdb1fu9/pdb
pdb_00001fu9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4174.862
U-SHAPED TRANSCRIPTIONAL COFACTOR
NINTH ZINC-FINGER DOMAIN
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
GSAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP
GSAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
fruit fly
Drosophila
Escherichia
sample
7227
Drosophila melanogaster
562
Escherichia coli
PGEX-2T
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-10-04
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1FV5 contains the first zinc finger of U-shaped
RCSB
Y
RCSB
2000-09-14
REL
REL
ZN
ZINC ION
This structure was determined using a combination of 2D homonuclear and 3D 15N-heteronuclear techniques
structures with the lowest energy
500
20
2D NOESY
HNHA
HNHB
0.6mM ZnSO4
5.0
ambient
293
K
0.3mM ZnSO4
5.0
ambient
293
K
The structures are based on a total of 535 restraints, 506 are NOE-derived distance constraints, 29 are dihedral angle restraints
molecular dynamics simulated annealing torsion angle dynamics
1
lowest energy
0.4mM U-shaped Finger 9; 0.6mM ZnSO4; 0.6mM TCEP; 95% H2O, 5% D2O
95% H2O/5% D2O
0.2mM U-shaped Finger 9 U-15N; 0.3mM ZnSO4; 0.3mM TCEP; 95% D2O, 5% H2O
95% H2O/5% D2O
Bruker
processing
XwinNMR
2.1
Bartels et al
data analysis
XEASY
1.3.13
Guntert et al
structure solution
DYANA
1.5
Brunger et al
refinement
CNS
0.5
600
Bruker
DRX
ZN
37
2
ZN
ZN
37
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
ALA
3
n
3
ALA
3
A
ALA
4
n
4
ALA
4
A
GLU
5
n
5
GLU
5
A
VAL
6
n
6
VAL
6
A
MET
7
n
7
MET
7
A
LYS
8
n
8
LYS
8
A
LYS
9
n
9
LYS
9
A
TYR
10
n
10
TYR
10
A
CYS
11
n
11
CYS
11
A
SER
12
n
12
SER
12
A
THR
13
n
13
THR
13
A
CYS
14
n
14
CYS
14
A
ASP
15
n
15
ASP
15
A
ILE
16
n
16
ILE
16
A
SER
17
n
17
SER
17
A
PHE
18
n
18
PHE
18
A
ASN
19
n
19
ASN
19
A
TYR
20
n
20
TYR
20
A
VAL
21
n
21
VAL
21
A
LYS
22
n
22
LYS
22
A
THR
23
n
23
THR
23
A
TYR
24
n
24
TYR
24
A
LEU
25
n
25
LEU
25
A
ALA
26
n
26
ALA
26
A
HIS
27
n
27
HIS
27
A
LYS
28
n
28
LYS
28
A
GLN
29
n
29
GLN
29
A
PHE
30
n
30
PHE
30
A
TYR
31
n
31
TYR
31
A
CYS
32
n
32
CYS
32
A
LYS
33
n
33
LYS
33
A
ASN
34
n
34
ASN
34
A
LYS
35
n
35
LYS
35
A
PRO
36
n
36
PRO
36
A
author_defined_assembly
1
monomeric
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
37
B
ZN
ZN
1_555
A
CYS
14
A
SG
CYS
14
1_555
109.9
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
37
B
ZN
ZN
1_555
A
HIS
27
A
NE2
HIS
27
1_555
110.9
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
37
B
ZN
ZN
1_555
A
HIS
27
A
NE2
HIS
27
1_555
108.3
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
37
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
109.2
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
37
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
109.7
A
HIS
27
A
NE2
HIS
27
1_555
A
ZN
37
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
108.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ALA
4
-73.65
-76.75
1
A
GLU
5
59.57
85.29
1
A
MET
7
-174.98
69.60
1
A
LYS
8
-94.93
47.51
1
A
LYS
9
-158.02
43.93
1
A
TYR
10
-165.11
109.34
1
A
ASP
15
72.42
50.53
1
A
PHE
30
-150.10
19.35
1
A
LYS
33
-98.32
30.49
2
A
ALA
3
61.08
93.69
2
A
ALA
4
-59.56
-75.59
2
A
GLU
5
-43.79
104.44
2
A
MET
7
62.07
70.29
2
A
TYR
10
-165.13
102.33
2
A
ASP
15
74.15
42.51
2
A
PHE
30
-149.37
18.15
2
A
LYS
33
-98.53
35.44
3
A
MET
7
-151.87
65.42
3
A
LYS
8
-95.02
48.71
3
A
LYS
9
-150.63
65.57
3
A
TYR
10
-165.12
115.80
3
A
ASP
15
73.73
53.60
3
A
PHE
30
-148.44
16.74
3
A
LYS
35
43.44
72.05
4
A
ALA
3
-175.13
95.43
4
A
GLU
5
59.75
165.61
4
A
LYS
8
-94.40
48.13
4
A
TYR
10
-165.00
109.49
4
A
ASP
15
73.96
45.66
4
A
PHE
30
-151.34
19.15
5
A
ALA
4
-175.32
-76.15
5
A
GLU
5
59.94
97.21
5
A
MET
7
-105.18
61.79
5
A
LYS
9
-154.02
53.73
5
A
TYR
10
-165.23
108.92
5
A
ASP
15
74.56
39.49
5
A
PHE
30
-151.21
19.52
6
A
ALA
3
-175.03
36.84
6
A
ALA
4
-60.04
-75.55
6
A
GLU
5
-43.54
103.70
6
A
LYS
8
-95.07
48.79
6
A
LYS
9
-151.65
67.32
6
A
TYR
10
-165.06
115.76
6
A
ASP
15
74.48
46.57
6
A
PHE
30
-150.65
19.72
6
A
ASN
34
-102.86
59.23
6
A
LYS
35
60.20
159.17
7
A
SER
2
-66.45
-170.08
7
A
ALA
3
60.71
93.38
7
A
GLU
5
-43.84
164.26
7
A
MET
7
60.33
72.52
7
A
LYS
8
-95.25
44.21
7
A
LYS
9
-144.83
43.72
7
A
TYR
10
-165.21
106.55
7
A
ASP
15
74.67
41.77
7
A
PHE
30
-149.36
18.43
7
A
LYS
33
-98.31
35.14
8
A
SER
2
-62.25
-173.10
8
A
ALA
3
-175.51
95.93
8
A
GLU
5
-45.61
94.77
8
A
MET
7
60.29
87.58
8
A
LYS
9
-153.52
41.04
8
A
TYR
10
-165.28
107.01
8
A
ASP
15
75.18
48.33
8
A
PHE
30
-147.78
17.34
9
A
SER
2
-62.03
-169.49
9
A
ALA
3
-154.98
86.20
9
A
ALA
4
-65.55
78.47
9
A
GLU
5
60.37
163.36
9
A
MET
7
65.88
79.18
9
A
LYS
8
-94.98
46.22
9
A
LYS
9
62.22
70.42
9
A
TYR
10
-165.11
107.27
9
A
ASP
15
70.83
50.57
9
A
PHE
30
-151.50
20.91
10
A
SER
2
60.49
160.35
10
A
ALA
3
-155.04
30.17
10
A
GLU
5
56.66
84.51
10
A
MET
7
-105.17
61.65
10
A
LYS
8
-93.53
49.29
10
A
TYR
10
-165.23
112.37
10
A
PHE
30
-147.55
17.02
11
A
ALA
3
60.59
93.42
11
A
ALA
4
-61.66
-71.22
11
A
GLU
5
60.59
162.75
11
A
MET
7
-105.15
61.67
11
A
LYS
8
-95.02
49.35
11
A
LYS
9
-163.57
54.42
11
A
TYR
10
-165.08
108.35
11
A
ASP
15
83.04
43.73
11
A
PHE
30
-144.59
14.61
11
A
LYS
35
60.58
85.39
12
A
GLU
5
62.92
145.96
12
A
LYS
8
-95.11
48.22
12
A
LYS
9
-147.24
52.97
12
A
TYR
10
-165.09
109.57
12
A
ASP
15
73.21
42.56
12
A
PHE
30
-154.30
21.76
12
A
ASN
34
-112.73
75.98
12
A
LYS
35
61.50
154.24
13
A
SER
2
-174.11
-170.14
13
A
ALA
4
-173.68
106.92
13
A
GLU
5
-43.71
96.16
13
A
MET
7
62.49
71.04
13
A
LYS
8
-94.58
47.63
13
A
TYR
10
-165.12
108.49
13
A
ASP
15
74.22
41.40
13
A
PHE
30
-147.55
17.11
13
A
LYS
35
-161.61
55.32
14
A
ALA
4
-151.61
84.42
14
A
GLU
5
63.49
127.26
14
A
MET
7
-105.12
61.50
14
A
LYS
8
-140.43
46.59
14
A
LYS
9
-176.93
74.48
14
A
ASP
15
73.90
52.54
14
A
PHE
30
-147.28
16.52
14
A
LYS
33
-97.23
34.39
14
A
ASN
34
-152.72
78.97
15
A
ALA
4
59.66
91.96
15
A
GLU
5
49.54
96.16
15
A
MET
7
-170.88
68.87
15
A
LYS
8
-94.76
48.09
15
A
LYS
9
-175.13
65.26
15
A
TYR
10
-165.14
109.16
15
A
ASP
15
75.37
40.00
15
A
PHE
30
-145.57
15.76
16
A
GLU
5
63.27
123.49
16
A
MET
7
-172.28
66.16
16
A
LYS
8
-95.04
48.64
16
A
TYR
10
-165.06
119.49
16
A
ASP
15
73.67
51.67
16
A
PHE
30
-150.73
19.32
16
A
ASN
34
-90.63
51.46
16
A
LYS
35
60.13
85.68
17
A
SER
2
58.60
-172.01
17
A
ALA
3
61.13
93.88
17
A
LYS
8
-94.97
49.39
17
A
LYS
9
-96.96
41.06
17
A
ASP
15
76.25
53.38
17
A
PHE
30
-148.74
17.33
17
A
ASN
34
-117.62
69.79
17
A
LYS
35
43.40
70.07
18
A
SER
2
60.66
-176.46
18
A
ALA
3
-155.03
80.90
18
A
ALA
4
-108.21
-61.78
18
A
GLU
5
60.09
101.60
18
A
LYS
8
-140.18
45.18
18
A
TYR
10
-165.26
113.49
18
A
ASP
15
74.46
53.70
18
A
PHE
30
-152.71
21.32
18
A
LYS
33
-98.32
35.21
18
A
ASN
34
-157.97
86.74
18
A
LYS
35
-175.85
81.81
19
A
ALA
3
-171.67
36.76
19
A
ALA
4
66.29
-74.86
19
A
GLU
5
61.29
114.07
19
A
MET
7
-151.05
68.86
19
A
LYS
8
-95.09
48.02
19
A
ASP
15
74.25
51.39
19
A
PHE
30
-149.02
18.13
19
A
ASN
34
-107.15
73.56
20
A
ALA
3
-155.29
52.05
20
A
ALA
4
64.07
-79.63
20
A
GLU
5
48.28
91.41
20
A
MET
7
60.08
68.05
20
A
LYS
8
-95.13
48.22
20
A
ASP
15
74.19
50.61
20
A
PHE
30
-147.67
17.50
20
A
ASN
34
52.22
77.93
SOLUTION STRUCTURE OF THE NINTH ZINC-FINGER DOMAIN OF THE U-SHAPED TRANSCRIPTION FACTOR
1
N
N
2
N
N
A
TYR
20
A
TYR
20
HELX_P
A
TYR
31
A
TYR
31
1
1
12
metalc
2.303
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
37
B
ZN
ZN
1_555
metalc
2.301
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
37
B
ZN
ZN
1_555
metalc
2.001
A
HIS
27
A
NE2
HIS
27
1_555
A
ZN
37
B
ZN
ZN
1_555
metalc
2.300
A
CYS
32
A
SG
CYS
32
1_555
A
ZN
37
B
ZN
ZN
1_555
TRANSCRIPTION
zinc-finger, beta-hairpin + alpha-helix, TRANSCRIPTION
USH_DROME
UNP
1
587
Q9VPQ6
AAAEVMKKYCSTCDISFNYVKTYLAHKQFYCKNKP
587
620
1FU9
3
36
Q9VPQ6
A
1
3
36
1
cloning artifact
GLY
1
1FU9
A
Q9VPQ6
UNP
1
1
cloning artifact
SER
2
1FU9
A
Q9VPQ6
UNP
2
BINDING SITE FOR RESIDUE ZN A 37
A
ZN
37
Software
4
A
CYS
11
A
CYS
11
4
1_555
A
CYS
14
A
CYS
14
4
1_555
A
HIS
27
A
HIS
27
4
1_555
A
CYS
32
A
CYS
32
4
1_555
1
P 1