0.021436 0.000000 0.000000 0.000000 0.017775 0.000000 0.000000 0.000000 0.031646 0.00000 0.00000 0.00000 RESIDUES 39 AND 55 ARE CIS PROLINES. Katayanagi, K. Vassylyev, D.G. Ishikawa, K. Morikawa, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 46.650 56.260 31.600 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H7 N O3 129.114 n PYROGLUTAMIC ACID L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 230 979 996 10.1006/jmbi.1993.1214 8386773 Crystal structures of ribonuclease F1 of Fusarium moniliforme in its free form and in complex with 2'GMP. 1993 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 x-ray 1 1.0 10989.544 RIBONUCLEASE F1 3.1.27.3 1 man polymer 18.015 water 107 nat water no yes (PCA)SATTCGSTNYSASQVRAAANAACQYYQNDDTAGSSTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADR VVINTNCEYAGAITHTGASGNNFVGCSGTN QSATTCGSTNYSASQVRAAANAACQYYQNDDTAGSSTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADRVVIN TNCEYAGAITHTGASGNNFVGCSGTN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Gibberella sample 5127 Gibberella fujikuroi 1.89 34.78 pdbx_database_status struct_conf struct_conf_type entity_poly pdbx_struct_mod_residue struct_conn struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Derived calculations Other Database references Derived calculations Polymer sequence 1 0 1993-10-31 1 1 2008-03-24 1 2 2011-07-13 1 3 2017-11-29 2 0 2019-12-25 _pdbx_database_status.process_site _entity_poly.pdbx_seq_one_letter_code_can _pdbx_struct_mod_residue.parent_comp_id _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details Y BNL 1993-01-18 REL HOH water SEQUENCE ADVISORY NOTICE: DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. SWISS-PROT ENTRY NAME: RFN1_FUSMO SWISS-PROT RESIDUE PDB SEQRES NAME NUMBER NAME CHAIN SEQ/INSERT CODE SER 32 THR 32 THR 36 SER 36 HOH 108 2 HOH HOH 108 A HOH 109 2 HOH HOH 109 A HOH 110 2 HOH HOH 110 A HOH 111 2 HOH HOH 111 A HOH 112 2 HOH HOH 112 A HOH 113 2 HOH HOH 113 A HOH 114 2 HOH HOH 114 A HOH 115 2 HOH HOH 115 A HOH 116 2 HOH HOH 116 A HOH 117 2 HOH HOH 117 A HOH 118 2 HOH HOH 118 A HOH 119 2 HOH HOH 119 A HOH 120 2 HOH HOH 120 A HOH 121 2 HOH HOH 121 A HOH 122 2 HOH HOH 122 A HOH 123 2 HOH HOH 123 A HOH 124 2 HOH HOH 124 A HOH 125 2 HOH HOH 125 A HOH 126 2 HOH HOH 126 A HOH 127 2 HOH HOH 127 A HOH 128 2 HOH HOH 128 A HOH 129 2 HOH HOH 129 A HOH 130 2 HOH HOH 130 A HOH 131 2 HOH HOH 131 A HOH 132 2 HOH HOH 132 A HOH 133 2 HOH HOH 133 A HOH 134 2 HOH HOH 134 A HOH 135 2 HOH HOH 135 A HOH 136 2 HOH HOH 136 A HOH 137 2 HOH HOH 137 A HOH 138 2 HOH HOH 138 A HOH 139 2 HOH HOH 139 A HOH 140 2 HOH HOH 140 A HOH 141 2 HOH HOH 141 A HOH 142 2 HOH HOH 142 A HOH 143 2 HOH HOH 143 A HOH 144 2 HOH HOH 144 A HOH 145 2 HOH HOH 145 A HOH 146 2 HOH HOH 146 A HOH 147 2 HOH HOH 147 A HOH 148 2 HOH HOH 148 A HOH 149 2 HOH HOH 149 A HOH 150 2 HOH HOH 150 A HOH 151 2 HOH HOH 151 A HOH 152 2 HOH HOH 152 A HOH 153 2 HOH HOH 153 A HOH 154 2 HOH HOH 154 A HOH 155 2 HOH HOH 155 A HOH 156 2 HOH HOH 156 A HOH 157 2 HOH HOH 157 A HOH 158 2 HOH HOH 158 A HOH 159 2 HOH HOH 159 A HOH 160 2 HOH HOH 160 A HOH 161 2 HOH HOH 161 A HOH 162 2 HOH HOH 162 A HOH 163 2 HOH HOH 163 A HOH 164 2 HOH HOH 164 A HOH 165 2 HOH HOH 165 A HOH 166 2 HOH HOH 166 A HOH 167 2 HOH HOH 167 A HOH 168 2 HOH HOH 168 A HOH 169 2 HOH HOH 169 A HOH 170 2 HOH HOH 170 A HOH 171 2 HOH HOH 171 A HOH 172 2 HOH HOH 172 A HOH 173 2 HOH HOH 173 A HOH 174 2 HOH HOH 174 A HOH 175 2 HOH HOH 175 A HOH 176 2 HOH HOH 176 A HOH 177 2 HOH HOH 177 A HOH 178 2 HOH HOH 178 A HOH 179 2 HOH HOH 179 A HOH 180 2 HOH HOH 180 A HOH 181 2 HOH HOH 181 A HOH 182 2 HOH HOH 182 A HOH 183 2 HOH HOH 183 A HOH 184 2 HOH HOH 184 A HOH 185 2 HOH HOH 185 A HOH 186 2 HOH HOH 186 A HOH 187 2 HOH HOH 187 A HOH 188 2 HOH HOH 188 A HOH 189 2 HOH HOH 189 A HOH 190 2 HOH HOH 190 A HOH 191 2 HOH HOH 191 A HOH 192 2 HOH HOH 192 A HOH 193 2 HOH HOH 193 A HOH 194 2 HOH HOH 194 A HOH 195 2 HOH HOH 195 A HOH 196 2 HOH HOH 196 A HOH 197 2 HOH HOH 197 A HOH 198 2 HOH HOH 198 A HOH 199 2 HOH HOH 199 A HOH 200 2 HOH HOH 200 A HOH 201 2 HOH HOH 201 A HOH 202 2 HOH HOH 202 A HOH 203 2 HOH HOH 203 A HOH 204 2 HOH HOH 204 A HOH 205 2 HOH HOH 205 A HOH 206 2 HOH HOH 206 A HOH 207 2 HOH HOH 207 A HOH 208 2 HOH HOH 208 A HOH 209 2 HOH HOH 209 A HOH 210 2 HOH HOH 210 A HOH 211 2 HOH HOH 211 A HOH 212 2 HOH HOH 212 A HOH 213 2 HOH HOH 213 A HOH 214 2 HOH HOH 214 A PCA 1 n 1 PCA 1 A SER 2 n 2 SER 2 A ALA 3 n 3 ALA 3 A THR 4 n 4 THR 4 A THR 5 n 5 THR 5 A CYS 6 n 6 CYS 6 A GLY 7 n 7 GLY 7 A SER 8 n 8 SER 8 A THR 9 n 9 THR 9 A ASN 10 n 10 ASN 10 A TYR 11 n 11 TYR 11 A SER 12 n 12 SER 12 A ALA 13 n 13 ALA 13 A SER 14 n 14 SER 14 A GLN 15 n 15 GLN 15 A VAL 16 n 16 VAL 16 A ARG 17 n 17 ARG 17 A ALA 18 n 18 ALA 18 A ALA 19 n 19 ALA 19 A ALA 20 n 20 ALA 20 A ASN 21 n 21 ASN 21 A ALA 22 n 22 ALA 22 A ALA 23 n 23 ALA 23 A CYS 24 n 24 CYS 24 A GLN 25 n 25 GLN 25 A TYR 26 n 26 TYR 26 A TYR 27 n 27 TYR 27 A GLN 28 n 28 GLN 28 A ASN 29 n 29 ASN 29 A ASP 30 n 30 ASP 30 A ASP 31 n 31 ASP 31 A THR 32 n 32 THR 32 A ALA 33 n 33 ALA 33 A GLY 34 n 34 GLY 34 A SER 35 n 35 SER 35 A SER 36 n 36 SER 36 A THR 37 n 37 THR 37 A TYR 38 n 38 TYR 38 A PRO 39 n 39 PRO 39 A HIS 40 n 40 HIS 40 A THR 41 n 41 THR 41 A TYR 42 n 42 TYR 42 A ASN 43 n 43 ASN 43 A ASN 44 n 44 ASN 44 A TYR 45 n 45 TYR 45 A GLU 46 n 46 GLU 46 A GLY 47 n 47 GLY 47 A PHE 48 n 48 PHE 48 A ASP 49 n 49 ASP 49 A PHE 50 n 50 PHE 50 A PRO 51 n 51 PRO 51 A VAL 52 n 52 VAL 52 A ASP 53 n 53 ASP 53 A GLY 54 n 54 GLY 54 A PRO 55 n 55 PRO 55 A TYR 56 n 56 TYR 56 A GLN 57 n 57 GLN 57 A GLU 58 n 58 GLU 58 A PHE 59 n 59 PHE 59 A PRO 60 n 60 PRO 60 A ILE 61 n 61 ILE 61 A LYS 62 n 62 LYS 62 A SER 63 n 63 SER 63 A GLY 64 n 64 GLY 64 A GLY 65 n 65 GLY 65 A VAL 67 n 66 VAL 67 A TYR 68 n 67 TYR 68 A THR 69 n 68 THR 69 A GLY 70 n 69 GLY 70 A GLY 71 n 70 GLY 71 A SER 72 n 71 SER 72 A PRO 73 n 72 PRO 73 A GLY 74 n 73 GLY 74 A ALA 75 n 74 ALA 75 A ASP 76 n 75 ASP 76 A ARG 77 n 76 ARG 77 A VAL 78 n 77 VAL 78 A VAL 79 n 78 VAL 79 A ILE 80 n 79 ILE 80 A ASN 81 n 80 ASN 81 A THR 82 n 81 THR 82 A ASN 83 n 82 ASN 83 A CYS 84 n 83 CYS 84 A GLU 85 n 84 GLU 85 A TYR 86 n 85 TYR 86 A ALA 87 n 86 ALA 87 A GLY 88 n 87 GLY 88 A ALA 89 n 88 ALA 89 A ILE 90 n 89 ILE 90 A THR 91 n 90 THR 91 A HIS 92 n 91 HIS 92 A THR 93 n 92 THR 93 A GLY 94 n 93 GLY 94 A ALA 95 n 94 ALA 95 A SER 96 n 95 SER 96 A GLY 97 n 96 GLY 97 A ASN 98 n 97 ASN 98 A ASN 99 n 98 ASN 99 A PHE 100 n 99 PHE 100 A VAL 101 n 100 VAL 101 A GLY 102 n 101 GLY 102 A CYS 103 n 102 CYS 103 A SER 104 n 103 SER 104 A GLY 105 n 104 GLY 105 A THR 106 n 105 THR 106 A ASN 107 n 106 ASN 107 A author_defined_assembly 1 monomeric A PCA 1 PYROGLUTAMIC ACID A PCA 1 GLN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 4 A N THR 4 A O TYR 11 A O TYR 11 A N HIS 40 A N HIS 40 A O GLU 58 A O GLU 58 A O PRO 55 A O PRO 55 A N THR 82 A N THR 81 A N ARG 77 A N ARG 76 A O ILE 90 A O ILE 89 A O ALA 89 A O ALA 88 A N CYS 103 A N CYS 102 1 -3.15 0.50 120.30 117.15 A A A NE CZ NH2 ARG ARG ARG 17 17 17 N 1 13.57 2.20 113.40 126.97 A A A CA CB CG ASP ASP ASP 53 53 53 N 1 -8.34 1.20 123.30 114.96 A A A OE1 CD OE2 GLU GLU GLU 85 85 85 N 1 A A O O HOH HOH 164 175 1.86 1_555 3_544 1 A A O O HOH HOH 180 191 2.01 1_555 4_444 0.187 1.3 8.0 1 1.0 1.3 8.0 107 880 0 0 773 0.015 0.020 0.033 0.030 0.042 0.050 1.023 1.500 1.505 2.000 2.212 2.000 3.299 2.500 0.015 0.020 0.151 0.150 0.144 0.300 0.164 0.300 0.207 0.300 2.9 3.0 15.7 15.0 19.7 20.0 refinement PROLSQ RIBONUCLEASE F1 (E.C.3.1.27.3) CRYSTAL STRUCTURES OF RIBONUCLEASE F1 OF FUSARIUM MONILIFORME IN ITS FREE FORM AND IN COMPLEX WITH 2'GMP 1 N N 2 N N A ALA 13 A ALA 13 HELX_P A GLN 28 A GLN 28 1 1 16 disulf 2.040 A CYS 6 A SG CYS 6 1_555 A CYS 103 A SG CYS 102 1_555 disulf 2.055 A CYS 24 A SG CYS 24 1_555 A CYS 84 A SG CYS 83 1_555 covale 1.328 both A PCA 1 A C PCA 1 1_555 A SER 2 A N SER 2 1_555 HYDROLASE(ENDORIBONUCLEASE) HYDROLASE(ENDORIBONUCLEASE) A TYR 38 A TYR 38 1 A PRO 39 A PRO 39 -4.75 A GLY 54 A GLY 54 1 A PRO 55 A PRO 55 -0.36 RNF1_GIBFU UNP 1 1 P10282 QSATTCGSTNYSASQVRAAANAACQYYQNDDSAGSTTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADRVVIN TNCEYAGAITHTGASGNNFVGCSGTN 2 106 1FUS 2 107 P10282 A 1 2 106 1 SER conflict THR 32 1FUS A P10282 UNP 32 32 1 THR conflict SER 36 1FUS A P10282 UNP 36 36 2 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ALA 3 A ALA 3 A CYS 6 A CYS 6 A THR 9 A THR 9 A SER 12 A SER 12 A TYR 38 A TYR 38 A TYR 42 A TYR 42 A ASP 53 A ASP 53 A LYS 62 A LYS 62 A ASP 76 A ASP 75 A THR 82 A THR 81 A GLY 88 A GLY 87 A THR 91 A THR 90 A VAL 101 A VAL 100 A CYS 103 A CYS 102 19 P 21 21 21