0.021436
0.000000
0.000000
0.000000
0.017775
0.000000
0.000000
0.000000
0.031646
0.00000
0.00000
0.00000
RESIDUES 39 AND 55 ARE CIS PROLINES.
Katayanagi, K.
Vassylyev, D.G.
Ishikawa, K.
Morikawa, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
46.650
56.260
31.600
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
230
979
996
10.1006/jmbi.1993.1214
8386773
Crystal structures of ribonuclease F1 of Fusarium moniliforme in its free form and in complex with 2'GMP.
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
10989.544
RIBONUCLEASE F1
3.1.27.3
1
man
polymer
18.015
water
107
nat
water
no
yes
(PCA)SATTCGSTNYSASQVRAAANAACQYYQNDDTAGSSTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADR
VVINTNCEYAGAITHTGASGNNFVGCSGTN
QSATTCGSTNYSASQVRAAANAACQYYQNDDTAGSSTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADRVVIN
TNCEYAGAITHTGASGNNFVGCSGTN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Gibberella
sample
5127
Gibberella fujikuroi
1.89
34.78
pdbx_database_status
struct_conf
struct_conf_type
entity_poly
pdbx_struct_mod_residue
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Database references
Derived calculations
Polymer sequence
1
0
1993-10-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
2
0
2019-12-25
_pdbx_database_status.process_site
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
BNL
1993-01-18
REL
HOH
water
SEQUENCE ADVISORY NOTICE:
DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE.
SWISS-PROT ENTRY NAME: RFN1_FUSMO
SWISS-PROT RESIDUE PDB SEQRES
NAME NUMBER NAME CHAIN SEQ/INSERT CODE
SER 32 THR 32
THR 36 SER 36
HOH
108
2
HOH
HOH
108
A
HOH
109
2
HOH
HOH
109
A
HOH
110
2
HOH
HOH
110
A
HOH
111
2
HOH
HOH
111
A
HOH
112
2
HOH
HOH
112
A
HOH
113
2
HOH
HOH
113
A
HOH
114
2
HOH
HOH
114
A
HOH
115
2
HOH
HOH
115
A
HOH
116
2
HOH
HOH
116
A
HOH
117
2
HOH
HOH
117
A
HOH
118
2
HOH
HOH
118
A
HOH
119
2
HOH
HOH
119
A
HOH
120
2
HOH
HOH
120
A
HOH
121
2
HOH
HOH
121
A
HOH
122
2
HOH
HOH
122
A
HOH
123
2
HOH
HOH
123
A
HOH
124
2
HOH
HOH
124
A
HOH
125
2
HOH
HOH
125
A
HOH
126
2
HOH
HOH
126
A
HOH
127
2
HOH
HOH
127
A
HOH
128
2
HOH
HOH
128
A
HOH
129
2
HOH
HOH
129
A
HOH
130
2
HOH
HOH
130
A
HOH
131
2
HOH
HOH
131
A
HOH
132
2
HOH
HOH
132
A
HOH
133
2
HOH
HOH
133
A
HOH
134
2
HOH
HOH
134
A
HOH
135
2
HOH
HOH
135
A
HOH
136
2
HOH
HOH
136
A
HOH
137
2
HOH
HOH
137
A
HOH
138
2
HOH
HOH
138
A
HOH
139
2
HOH
HOH
139
A
HOH
140
2
HOH
HOH
140
A
HOH
141
2
HOH
HOH
141
A
HOH
142
2
HOH
HOH
142
A
HOH
143
2
HOH
HOH
143
A
HOH
144
2
HOH
HOH
144
A
HOH
145
2
HOH
HOH
145
A
HOH
146
2
HOH
HOH
146
A
HOH
147
2
HOH
HOH
147
A
HOH
148
2
HOH
HOH
148
A
HOH
149
2
HOH
HOH
149
A
HOH
150
2
HOH
HOH
150
A
HOH
151
2
HOH
HOH
151
A
HOH
152
2
HOH
HOH
152
A
HOH
153
2
HOH
HOH
153
A
HOH
154
2
HOH
HOH
154
A
HOH
155
2
HOH
HOH
155
A
HOH
156
2
HOH
HOH
156
A
HOH
157
2
HOH
HOH
157
A
HOH
158
2
HOH
HOH
158
A
HOH
159
2
HOH
HOH
159
A
HOH
160
2
HOH
HOH
160
A
HOH
161
2
HOH
HOH
161
A
HOH
162
2
HOH
HOH
162
A
HOH
163
2
HOH
HOH
163
A
HOH
164
2
HOH
HOH
164
A
HOH
165
2
HOH
HOH
165
A
HOH
166
2
HOH
HOH
166
A
HOH
167
2
HOH
HOH
167
A
HOH
168
2
HOH
HOH
168
A
HOH
169
2
HOH
HOH
169
A
HOH
170
2
HOH
HOH
170
A
HOH
171
2
HOH
HOH
171
A
HOH
172
2
HOH
HOH
172
A
HOH
173
2
HOH
HOH
173
A
HOH
174
2
HOH
HOH
174
A
HOH
175
2
HOH
HOH
175
A
HOH
176
2
HOH
HOH
176
A
HOH
177
2
HOH
HOH
177
A
HOH
178
2
HOH
HOH
178
A
HOH
179
2
HOH
HOH
179
A
HOH
180
2
HOH
HOH
180
A
HOH
181
2
HOH
HOH
181
A
HOH
182
2
HOH
HOH
182
A
HOH
183
2
HOH
HOH
183
A
HOH
184
2
HOH
HOH
184
A
HOH
185
2
HOH
HOH
185
A
HOH
186
2
HOH
HOH
186
A
HOH
187
2
HOH
HOH
187
A
HOH
188
2
HOH
HOH
188
A
HOH
189
2
HOH
HOH
189
A
HOH
190
2
HOH
HOH
190
A
HOH
191
2
HOH
HOH
191
A
HOH
192
2
HOH
HOH
192
A
HOH
193
2
HOH
HOH
193
A
HOH
194
2
HOH
HOH
194
A
HOH
195
2
HOH
HOH
195
A
HOH
196
2
HOH
HOH
196
A
HOH
197
2
HOH
HOH
197
A
HOH
198
2
HOH
HOH
198
A
HOH
199
2
HOH
HOH
199
A
HOH
200
2
HOH
HOH
200
A
HOH
201
2
HOH
HOH
201
A
HOH
202
2
HOH
HOH
202
A
HOH
203
2
HOH
HOH
203
A
HOH
204
2
HOH
HOH
204
A
HOH
205
2
HOH
HOH
205
A
HOH
206
2
HOH
HOH
206
A
HOH
207
2
HOH
HOH
207
A
HOH
208
2
HOH
HOH
208
A
HOH
209
2
HOH
HOH
209
A
HOH
210
2
HOH
HOH
210
A
HOH
211
2
HOH
HOH
211
A
HOH
212
2
HOH
HOH
212
A
HOH
213
2
HOH
HOH
213
A
HOH
214
2
HOH
HOH
214
A
PCA
1
n
1
PCA
1
A
SER
2
n
2
SER
2
A
ALA
3
n
3
ALA
3
A
THR
4
n
4
THR
4
A
THR
5
n
5
THR
5
A
CYS
6
n
6
CYS
6
A
GLY
7
n
7
GLY
7
A
SER
8
n
8
SER
8
A
THR
9
n
9
THR
9
A
ASN
10
n
10
ASN
10
A
TYR
11
n
11
TYR
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
SER
14
n
14
SER
14
A
GLN
15
n
15
GLN
15
A
VAL
16
n
16
VAL
16
A
ARG
17
n
17
ARG
17
A
ALA
18
n
18
ALA
18
A
ALA
19
n
19
ALA
19
A
ALA
20
n
20
ALA
20
A
ASN
21
n
21
ASN
21
A
ALA
22
n
22
ALA
22
A
ALA
23
n
23
ALA
23
A
CYS
24
n
24
CYS
24
A
GLN
25
n
25
GLN
25
A
TYR
26
n
26
TYR
26
A
TYR
27
n
27
TYR
27
A
GLN
28
n
28
GLN
28
A
ASN
29
n
29
ASN
29
A
ASP
30
n
30
ASP
30
A
ASP
31
n
31
ASP
31
A
THR
32
n
32
THR
32
A
ALA
33
n
33
ALA
33
A
GLY
34
n
34
GLY
34
A
SER
35
n
35
SER
35
A
SER
36
n
36
SER
36
A
THR
37
n
37
THR
37
A
TYR
38
n
38
TYR
38
A
PRO
39
n
39
PRO
39
A
HIS
40
n
40
HIS
40
A
THR
41
n
41
THR
41
A
TYR
42
n
42
TYR
42
A
ASN
43
n
43
ASN
43
A
ASN
44
n
44
ASN
44
A
TYR
45
n
45
TYR
45
A
GLU
46
n
46
GLU
46
A
GLY
47
n
47
GLY
47
A
PHE
48
n
48
PHE
48
A
ASP
49
n
49
ASP
49
A
PHE
50
n
50
PHE
50
A
PRO
51
n
51
PRO
51
A
VAL
52
n
52
VAL
52
A
ASP
53
n
53
ASP
53
A
GLY
54
n
54
GLY
54
A
PRO
55
n
55
PRO
55
A
TYR
56
n
56
TYR
56
A
GLN
57
n
57
GLN
57
A
GLU
58
n
58
GLU
58
A
PHE
59
n
59
PHE
59
A
PRO
60
n
60
PRO
60
A
ILE
61
n
61
ILE
61
A
LYS
62
n
62
LYS
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
GLY
65
n
65
GLY
65
A
VAL
67
n
66
VAL
67
A
TYR
68
n
67
TYR
68
A
THR
69
n
68
THR
69
A
GLY
70
n
69
GLY
70
A
GLY
71
n
70
GLY
71
A
SER
72
n
71
SER
72
A
PRO
73
n
72
PRO
73
A
GLY
74
n
73
GLY
74
A
ALA
75
n
74
ALA
75
A
ASP
76
n
75
ASP
76
A
ARG
77
n
76
ARG
77
A
VAL
78
n
77
VAL
78
A
VAL
79
n
78
VAL
79
A
ILE
80
n
79
ILE
80
A
ASN
81
n
80
ASN
81
A
THR
82
n
81
THR
82
A
ASN
83
n
82
ASN
83
A
CYS
84
n
83
CYS
84
A
GLU
85
n
84
GLU
85
A
TYR
86
n
85
TYR
86
A
ALA
87
n
86
ALA
87
A
GLY
88
n
87
GLY
88
A
ALA
89
n
88
ALA
89
A
ILE
90
n
89
ILE
90
A
THR
91
n
90
THR
91
A
HIS
92
n
91
HIS
92
A
THR
93
n
92
THR
93
A
GLY
94
n
93
GLY
94
A
ALA
95
n
94
ALA
95
A
SER
96
n
95
SER
96
A
GLY
97
n
96
GLY
97
A
ASN
98
n
97
ASN
98
A
ASN
99
n
98
ASN
99
A
PHE
100
n
99
PHE
100
A
VAL
101
n
100
VAL
101
A
GLY
102
n
101
GLY
102
A
CYS
103
n
102
CYS
103
A
SER
104
n
103
SER
104
A
GLY
105
n
104
GLY
105
A
THR
106
n
105
THR
106
A
ASN
107
n
106
ASN
107
A
author_defined_assembly
1
monomeric
A
PCA
1
PYROGLUTAMIC ACID
A
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
4
A
N
THR
4
A
O
TYR
11
A
O
TYR
11
A
N
HIS
40
A
N
HIS
40
A
O
GLU
58
A
O
GLU
58
A
O
PRO
55
A
O
PRO
55
A
N
THR
82
A
N
THR
81
A
N
ARG
77
A
N
ARG
76
A
O
ILE
90
A
O
ILE
89
A
O
ALA
89
A
O
ALA
88
A
N
CYS
103
A
N
CYS
102
1
-3.15
0.50
120.30
117.15
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
17
17
17
N
1
13.57
2.20
113.40
126.97
A
A
A
CA
CB
CG
ASP
ASP
ASP
53
53
53
N
1
-8.34
1.20
123.30
114.96
A
A
A
OE1
CD
OE2
GLU
GLU
GLU
85
85
85
N
1
A
A
O
O
HOH
HOH
164
175
1.86
1_555
3_544
1
A
A
O
O
HOH
HOH
180
191
2.01
1_555
4_444
0.187
1.3
8.0
1
1.0
1.3
8.0
107
880
0
0
773
0.015
0.020
0.033
0.030
0.042
0.050
1.023
1.500
1.505
2.000
2.212
2.000
3.299
2.500
0.015
0.020
0.151
0.150
0.144
0.300
0.164
0.300
0.207
0.300
2.9
3.0
15.7
15.0
19.7
20.0
refinement
PROLSQ
RIBONUCLEASE F1 (E.C.3.1.27.3)
CRYSTAL STRUCTURES OF RIBONUCLEASE F1 OF FUSARIUM MONILIFORME IN ITS FREE FORM AND IN COMPLEX WITH 2'GMP
1
N
N
2
N
N
A
ALA
13
A
ALA
13
HELX_P
A
GLN
28
A
GLN
28
1
1
16
disulf
2.040
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
103
A
SG
CYS
102
1_555
disulf
2.055
A
CYS
24
A
SG
CYS
24
1_555
A
CYS
84
A
SG
CYS
83
1_555
covale
1.328
both
A
PCA
1
A
C
PCA
1
1_555
A
SER
2
A
N
SER
2
1_555
HYDROLASE(ENDORIBONUCLEASE)
HYDROLASE(ENDORIBONUCLEASE)
A
TYR
38
A
TYR
38
1
A
PRO
39
A
PRO
39
-4.75
A
GLY
54
A
GLY
54
1
A
PRO
55
A
PRO
55
-0.36
RNF1_GIBFU
UNP
1
1
P10282
QSATTCGSTNYSASQVRAAANAACQYYQNDDSAGSTTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADRVVIN
TNCEYAGAITHTGASGNNFVGCSGTN
2
106
1FUS
2
107
P10282
A
1
2
106
1
SER
conflict
THR
32
1FUS
A
P10282
UNP
32
32
1
THR
conflict
SER
36
1FUS
A
P10282
UNP
36
36
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
3
A
ALA
3
A
CYS
6
A
CYS
6
A
THR
9
A
THR
9
A
SER
12
A
SER
12
A
TYR
38
A
TYR
38
A
TYR
42
A
TYR
42
A
ASP
53
A
ASP
53
A
LYS
62
A
LYS
62
A
ASP
76
A
ASP
75
A
THR
82
A
THR
81
A
GLY
88
A
GLY
87
A
THR
91
A
THR
90
A
VAL
101
A
VAL
100
A
CYS
103
A
CYS
102
19
P 21 21 21