0.024900
0.014376
0.000000
0.000000
0.028753
0.000000
0.000000
0.000000
0.008275
0.00000
0.00000
0.00000
RESIDUES 39 AND 55 ARE CIS PROLINES.
Katayanagi, K.
Vassylyev, D.G.
Ishikawa, K.
Morikawa, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
40.160
40.160
120.850
C10 H14 N5 O8 P
363.221
GUANOSINE-2'-MONOPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H7 N O3
129.114
n
PYROGLUTAMIC ACID
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
230
979
996
10.1006/jmbi.1993.1214
8386773
Crystal structures of ribonuclease F1 of Fusarium moniliforme in its free form and in complex with 2'GMP.
1993
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
10989.544
RIBONUCLEASE F1
3.1.27.3
1
man
polymer
363.221
GUANOSINE-2'-MONOPHOSPHATE
1
syn
non-polymer
18.015
water
46
nat
water
no
yes
(PCA)SATTCGSTNYSASQVRAAANAACQYYQNDDTAGSSTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADR
VVINTNCEYAGAITHTGASGNNFVGCSGTN
QSATTCGSTNYSASQVRAAANAACQYYQNDDTAGSSTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADRVVIN
TNCEYAGAITHTGASGNNFVGCSGTN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Gibberella
sample
5127
Gibberella fujikuroi
2.56
51.93
pdbx_database_status
struct_conf
struct_conf_type
entity_poly
pdbx_struct_mod_residue
struct_conn
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
Database references
Derived calculations
Polymer sequence
1
0
1993-10-31
1
1
2008-03-24
1
2
2011-07-13
1
3
2017-11-29
2
0
2019-12-25
_pdbx_database_status.process_site
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_struct_mod_residue.parent_comp_id
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
Y
BNL
1993-01-18
REL
2GP
GUANOSINE-2'-MONOPHOSPHATE
HOH
water
SEQUENCE ADVISORY NOTICE:
DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE.
SWISS-PROT ENTRY NAME: RFN1_FUSMO
SWISS-PROT RESIDUE PDB SEQRES
NAME NUMBER NAME CHAIN SEQ/INSERT CODE
SER 32 THR 32
THR 36 SER 36
2GP
108
2
2GP
2GP
108
A
HOH
109
3
HOH
HOH
109
A
HOH
110
3
HOH
HOH
110
A
HOH
111
3
HOH
HOH
111
A
HOH
112
3
HOH
HOH
112
A
HOH
113
3
HOH
HOH
113
A
HOH
114
3
HOH
HOH
114
A
HOH
115
3
HOH
HOH
115
A
HOH
116
3
HOH
HOH
116
A
HOH
117
3
HOH
HOH
117
A
HOH
118
3
HOH
HOH
118
A
HOH
119
3
HOH
HOH
119
A
HOH
120
3
HOH
HOH
120
A
HOH
121
3
HOH
HOH
121
A
HOH
122
3
HOH
HOH
122
A
HOH
123
3
HOH
HOH
123
A
HOH
124
3
HOH
HOH
124
A
HOH
125
3
HOH
HOH
125
A
HOH
126
3
HOH
HOH
126
A
HOH
127
3
HOH
HOH
127
A
HOH
128
3
HOH
HOH
128
A
HOH
129
3
HOH
HOH
129
A
HOH
130
3
HOH
HOH
130
A
HOH
131
3
HOH
HOH
131
A
HOH
132
3
HOH
HOH
132
A
HOH
133
3
HOH
HOH
133
A
HOH
134
3
HOH
HOH
134
A
HOH
135
3
HOH
HOH
135
A
HOH
136
3
HOH
HOH
136
A
HOH
137
3
HOH
HOH
137
A
HOH
138
3
HOH
HOH
138
A
HOH
139
3
HOH
HOH
139
A
HOH
140
3
HOH
HOH
140
A
HOH
141
3
HOH
HOH
141
A
HOH
142
3
HOH
HOH
142
A
HOH
143
3
HOH
HOH
143
A
HOH
144
3
HOH
HOH
144
A
HOH
145
3
HOH
HOH
145
A
HOH
146
3
HOH
HOH
146
A
HOH
147
3
HOH
HOH
147
A
HOH
148
3
HOH
HOH
148
A
HOH
149
3
HOH
HOH
149
A
HOH
150
3
HOH
HOH
150
A
HOH
151
3
HOH
HOH
151
A
HOH
152
3
HOH
HOH
152
A
HOH
153
3
HOH
HOH
153
A
HOH
154
3
HOH
HOH
154
A
PCA
1
n
1
PCA
1
A
SER
2
n
2
SER
2
A
ALA
3
n
3
ALA
3
A
THR
4
n
4
THR
4
A
THR
5
n
5
THR
5
A
CYS
6
n
6
CYS
6
A
GLY
7
n
7
GLY
7
A
SER
8
n
8
SER
8
A
THR
9
n
9
THR
9
A
ASN
10
n
10
ASN
10
A
TYR
11
n
11
TYR
11
A
SER
12
n
12
SER
12
A
ALA
13
n
13
ALA
13
A
SER
14
n
14
SER
14
A
GLN
15
n
15
GLN
15
A
VAL
16
n
16
VAL
16
A
ARG
17
n
17
ARG
17
A
ALA
18
n
18
ALA
18
A
ALA
19
n
19
ALA
19
A
ALA
20
n
20
ALA
20
A
ASN
21
n
21
ASN
21
A
ALA
22
n
22
ALA
22
A
ALA
23
n
23
ALA
23
A
CYS
24
n
24
CYS
24
A
GLN
25
n
25
GLN
25
A
TYR
26
n
26
TYR
26
A
TYR
27
n
27
TYR
27
A
GLN
28
n
28
GLN
28
A
ASN
29
n
29
ASN
29
A
ASP
30
n
30
ASP
30
A
ASP
31
n
31
ASP
31
A
THR
32
n
32
THR
32
A
ALA
33
n
33
ALA
33
A
GLY
34
n
34
GLY
34
A
SER
35
n
35
SER
35
A
SER
36
n
36
SER
36
A
THR
37
n
37
THR
37
A
TYR
38
n
38
TYR
38
A
PRO
39
n
39
PRO
39
A
HIS
40
n
40
HIS
40
A
THR
41
n
41
THR
41
A
TYR
42
n
42
TYR
42
A
ASN
43
n
43
ASN
43
A
ASN
44
n
44
ASN
44
A
TYR
45
n
45
TYR
45
A
GLU
46
n
46
GLU
46
A
GLY
47
n
47
GLY
47
A
PHE
48
n
48
PHE
48
A
ASP
49
n
49
ASP
49
A
PHE
50
n
50
PHE
50
A
PRO
51
n
51
PRO
51
A
VAL
52
n
52
VAL
52
A
ASP
53
n
53
ASP
53
A
GLY
54
n
54
GLY
54
A
PRO
55
n
55
PRO
55
A
TYR
56
n
56
TYR
56
A
GLN
57
n
57
GLN
57
A
GLU
58
n
58
GLU
58
A
PHE
59
n
59
PHE
59
A
PRO
60
n
60
PRO
60
A
ILE
61
n
61
ILE
61
A
LYS
62
n
62
LYS
62
A
SER
63
n
63
SER
63
A
GLY
64
n
64
GLY
64
A
GLY
65
n
65
GLY
65
A
VAL
67
n
66
VAL
67
A
TYR
68
n
67
TYR
68
A
THR
69
n
68
THR
69
A
GLY
70
n
69
GLY
70
A
GLY
71
n
70
GLY
71
A
SER
72
n
71
SER
72
A
PRO
73
n
72
PRO
73
A
GLY
74
n
73
GLY
74
A
ALA
75
n
74
ALA
75
A
ASP
76
n
75
ASP
76
A
ARG
77
n
76
ARG
77
A
VAL
78
n
77
VAL
78
A
VAL
79
n
78
VAL
79
A
ILE
80
n
79
ILE
80
A
ASN
81
n
80
ASN
81
A
THR
82
n
81
THR
82
A
ASN
83
n
82
ASN
83
A
CYS
84
n
83
CYS
84
A
GLU
85
n
84
GLU
85
A
TYR
86
n
85
TYR
86
A
ALA
87
n
86
ALA
87
A
GLY
88
n
87
GLY
88
A
ALA
89
n
88
ALA
89
A
ILE
90
n
89
ILE
90
A
THR
91
n
90
THR
91
A
HIS
92
n
91
HIS
92
A
THR
93
n
92
THR
93
A
GLY
94
n
93
GLY
94
A
ALA
95
n
94
ALA
95
A
SER
96
n
95
SER
96
A
GLY
97
n
96
GLY
97
A
ASN
98
n
97
ASN
98
A
ASN
99
n
98
ASN
99
A
PHE
100
n
99
PHE
100
A
VAL
101
n
100
VAL
101
A
GLY
102
n
101
GLY
102
A
CYS
103
n
102
CYS
103
A
SER
104
n
103
SER
104
A
GLY
105
n
104
GLY
105
A
THR
106
n
105
THR
106
A
ASN
107
n
106
ASN
107
A
author_defined_assembly
1
monomeric
A
PCA
1
PYROGLUTAMIC ACID
A
PCA
1
GLN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
4
A
N
THR
4
A
O
TYR
11
A
O
TYR
11
A
N
HIS
40
A
N
HIS
40
A
O
GLU
58
A
O
GLU
58
A
O
PRO
55
A
O
PRO
55
A
N
THR
82
A
N
THR
81
A
N
ARG
77
A
N
ARG
76
A
O
ILE
90
A
O
ILE
89
A
O
ALA
89
A
O
ALA
88
A
N
CYS
103
A
N
CYS
102
1
8.84
1.40
123.60
132.44
A
A
A
CD
NE
CZ
ARG
ARG
ARG
17
17
17
N
1
-7.14
0.90
118.30
111.16
A
A
A
CB
CG
OD2
ASP
ASP
ASP
31
31
31
N
1
9.77
0.50
120.30
130.07
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
77
77
77
N
1
-6.63
0.50
120.30
113.67
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
77
77
77
N
1
A
THR
82
-68.14
2.04
0.168
2.0
6.0
1
1.0
2.0
6.0
46
843
24
0
773
0.018
0.020
0.039
0.030
0.040
0.050
0.846
1.500
1.404
2.000
1.739
2.000
2.726
2.500
0.014
0.020
0.156
0.150
0.160
0.300
0.196
0.300
0.214
0.300
2.3
2.0
15.7
15.0
21.8
20.0
refinement
PROLSQ
RIBONUCLEASE F1 (E.C.3.1.27.3) COMPLEX WITH GUANOSINE-2'-MONOPHOSPHATE
CRYSTAL STRUCTURES OF RIBONUCLEASE F1 OF FUSARIUM MONILIFORME IN ITS FREE FORM AND IN COMPLEX WITH 2'GMP
1
N
N
2
N
N
3
N
N
A
ALA
13
A
ALA
13
HELX_P
A
GLN
28
A
GLN
28
1
1
16
disulf
2.035
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
103
A
SG
CYS
102
1_555
disulf
2.001
A
CYS
24
A
SG
CYS
24
1_555
A
CYS
84
A
SG
CYS
83
1_555
covale
1.311
both
A
PCA
1
A
C
PCA
1
1_555
A
SER
2
A
N
SER
2
1_555
HYDROLASE(ENDORIBONUCLEASE)
HYDROLASE(ENDORIBONUCLEASE)
A
TYR
38
A
TYR
38
1
A
PRO
39
A
PRO
39
-0.64
A
GLY
54
A
GLY
54
1
A
PRO
55
A
PRO
55
-0.37
RNF1_GIBFU
UNP
1
1
P10282
QSATTCGSTNYSASQVRAAANAACQYYQNDDSAGSTTYPHTYNNYEGFDFPVDGPYQEFPIKSGGVYTGGSPGADRVVIN
TNCEYAGAITHTGASGNNFVGCSGTN
2
106
1FUT
2
107
P10282
A
1
2
106
1
SER
conflict
THR
32
1FUT
A
P10282
UNP
32
32
1
THR
conflict
SER
36
1FUT
A
P10282
UNP
36
36
2
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
3
A
ALA
3
A
CYS
6
A
CYS
6
A
THR
9
A
THR
9
A
SER
12
A
SER
12
A
TYR
38
A
TYR
38
A
TYR
42
A
TYR
42
A
ASP
53
A
ASP
53
A
LYS
62
A
LYS
62
A
ASP
76
A
ASP
75
A
THR
82
A
THR
81
A
GLY
88
A
GLY
87
A
THR
91
A
THR
90
A
VAL
101
A
VAL
100
A
CYS
103
A
CYS
102
BINDING SITE FOR RESIDUE 2GP A 108
Software
18
A
TYR
38
A
TYR
38
18
1_555
A
HIS
40
A
HIS
40
18
1_555
A
THR
41
A
THR
41
18
1_555
A
TYR
42
A
TYR
42
18
1_555
A
ASN
43
A
ASN
43
18
1_555
A
ASN
44
A
ASN
44
18
1_555
A
TYR
45
A
TYR
45
18
1_555
A
GLU
46
A
GLU
46
18
1_555
A
PRO
51
A
PRO
51
18
5_554
A
VAL
52
A
VAL
52
18
5_554
A
ASP
53
A
ASP
53
18
5_554
A
GLU
58
A
GLU
58
18
1_555
A
ARG
77
A
ARG
76
18
1_555
A
GLU
85
A
GLU
84
18
5_554
A
ASN
98
A
ASN
97
18
1_555
A
PHE
100
A
PHE
99
18
1_555
A
HOH
140
C
HOH
18
1_555
A
HOH
152
C
HOH
18
1_555
169
P 61