1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Liew, C.K.
Kowalski, K.
Fox, A.H.
Newton, A.
Sharpe, B.K.
Crossley, M.
Mackay, J.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
Structure Fold.Des.
FODEFH
1263
0969-2126
8
1157
1166
10.1016/S0969-2126(00)00527-X
11080638
Solution structures of two CCHC zinc fingers from the FOG family protein U-shaped that mediate protein-protein interactions.
2000
10.2210/pdb1fv5/pdb
pdb_00001fv5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3961.636
FIRST ZINC FINGER OF U-SHAPED
FIRST ZINC FINGER DOMAIN (RESIDUES 202-235)
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
GSLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHRI
GSLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHRI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
fruit fly
Drosophila
Escherichia
sample
7227
Drosophila melanogaster
562
Escherichia coli
PGEX-2T
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-10-04
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1FU9 contains the ninth zinc finger of U-shaped
RCSB
Y
RCSB
2000-09-18
REL
REL
ZN
ZINC ION
The structure was determined using 2D homonuclear and heteronuclear techniques on unlabelled and 15N-labelled peptide.
structures with the lowest energy
500
20
2D NOESY
HNHA
HNHB
0
5.5
ambient
298
K
The structures are based on a total of 356 restraints, 324 are NOE-derived distance constraints and 32 are dihedral angle restraints
distance geometry
simulated annealing
cartesian dynamics
1
lowest energy
0.7mM U-shaped first finger; 95% H2O, 5% D2O
95% H2O/5% D2O
0.7mM U-shaped first finger 15N-labelled; 95% H2O, 5% D2O
95% H2O/5% D2O
Guenther
collection
XwinNMR
2.6
Bartels, Xia, Billeter, Guntert, Wuthrich
data analysis
XEASY
1.2
Guntert, Mumenthaler, Wuthrich
structure solution
DYANA
1.5
Warren, Nilges, Kuszewski, Clore, Brunger
refinement
CNS
1.0
600
Bruker
DRX
ZN
37
2
ZN
ZN
37
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
LEU
3
n
3
LEU
3
A
LEU
4
n
4
LEU
4
A
LYS
5
n
5
LYS
5
A
PRO
6
n
6
PRO
6
A
ALA
7
n
7
ALA
7
A
ARG
8
n
8
ARG
8
A
PHE
9
n
9
PHE
9
A
MET
10
n
10
MET
10
A
CYS
11
n
11
CYS
11
A
LEU
12
n
12
LEU
12
A
PRO
13
n
13
PRO
13
A
CYS
14
n
14
CYS
14
A
GLY
15
n
15
GLY
15
A
ILE
16
n
16
ILE
16
A
ALA
17
n
17
ALA
17
A
PHE
18
n
18
PHE
18
A
SER
19
n
19
SER
19
A
SER
20
n
20
SER
20
A
PRO
21
n
21
PRO
21
A
SER
22
n
22
SER
22
A
THR
23
n
23
THR
23
A
LEU
24
n
24
LEU
24
A
GLU
25
n
25
GLU
25
A
ALA
26
n
26
ALA
26
A
HIS
27
n
27
HIS
27
A
GLN
28
n
28
GLN
28
A
ALA
29
n
29
ALA
29
A
TYR
30
n
30
TYR
30
A
TYR
31
n
31
TYR
31
A
CYS
32
n
32
CYS
32
A
SER
33
n
33
SER
33
A
HIS
34
n
34
HIS
34
A
ARG
35
n
35
ARG
35
A
ILE
36
n
36
ILE
36
A
author_defined_assembly
1
monomeric
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
37
B
ZN
ZN
1_555
A
CYS
14
A
SG
CYS
14
1_555
110.2
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
37
B
ZN
ZN
1_555
A
HIS
27
A
NE2
HIS
27
1_555
110.0
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
37
B
ZN
ZN
1_555
A
HIS
27
A
NE2
HIS
27
1_555
109.8
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
37
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
108.8
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
37
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
110.1
A
HIS
27
A
NE2
HIS
27
1_555
A
ZN
37
B
ZN
ZN
1_555
A
CYS
32
A
SG
CYS
32
1_555
107.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
4
A
A
O
H
LEU
GLN
24
28
1.58
5
A
A
O
H
LEU
GLN
24
28
1.59
13
A
A
O
H
LEU
GLN
24
28
1.58
13
A
A
O
HG1
SER
THR
20
23
1.60
18
A
A
O
H
LEU
GLN
24
28
1.60
1
A
SER
2
65.09
-78.09
1
A
LYS
5
-167.58
102.67
1
A
ALA
7
-149.09
31.88
1
A
PHE
9
-113.28
71.42
1
A
SER
19
-154.56
28.40
1
A
TYR
30
-142.13
10.70
1
A
SER
33
45.42
-167.18
1
A
HIS
34
-104.95
77.87
2
A
SER
2
63.12
-79.56
2
A
MET
10
-163.18
114.06
2
A
SER
20
-165.23
110.48
2
A
PRO
21
-48.58
170.12
2
A
SER
22
69.38
-64.09
2
A
SER
33
74.80
-170.11
3
A
SER
2
63.04
-79.61
3
A
LEU
4
68.06
-72.21
3
A
PRO
6
-55.34
-167.91
3
A
ALA
7
-163.01
-70.67
3
A
PHE
9
-118.00
-159.13
3
A
MET
10
74.87
132.61
3
A
CYS
14
-157.47
-47.01
3
A
SER
19
-154.68
28.65
3
A
TYR
30
-143.59
13.52
3
A
SER
33
74.79
171.43
4
A
SER
2
68.00
-70.13
4
A
LEU
4
64.45
-79.19
4
A
SER
33
45.42
-168.10
5
A
SER
2
59.92
95.39
5
A
LEU
3
48.02
-176.38
5
A
LEU
4
65.17
-74.15
5
A
ALA
7
-166.97
-43.91
5
A
PHE
9
-111.26
68.36
5
A
CYS
32
-59.80
103.65
5
A
SER
33
45.48
-170.64
5
A
HIS
34
-105.27
68.96
6
A
SER
2
60.64
170.48
6
A
LYS
5
-170.55
147.85
6
A
ARG
8
63.42
125.28
6
A
PHE
9
-106.15
70.39
6
A
CYS
14
-161.02
-42.47
6
A
PHE
18
-84.75
-88.63
6
A
SER
19
174.91
-36.21
6
A
CYS
32
-67.02
80.25
6
A
SER
33
74.91
175.42
7
A
SER
2
63.86
-79.13
7
A
LEU
4
69.76
-64.86
7
A
PRO
6
-53.87
179.37
7
A
ALA
7
-175.06
38.09
7
A
PHE
9
-150.33
80.53
7
A
TYR
30
-148.03
19.46
8
A
SER
2
-177.11
-50.06
8
A
LEU
4
-54.99
-172.31
8
A
LYS
5
77.65
131.88
8
A
CYS
14
-157.83
-43.45
8
A
SER
19
-154.82
30.86
8
A
TYR
30
-145.56
12.28
8
A
CYS
32
-56.45
103.74
8
A
SER
33
45.39
-167.79
9
A
LEU
4
-177.03
-39.95
9
A
PRO
6
-53.09
95.40
9
A
SER
19
-154.48
28.31
9
A
TYR
30
-149.37
16.14
9
A
CYS
32
-57.05
87.95
9
A
SER
33
45.20
-90.54
10
A
SER
2
60.15
-171.66
10
A
LEU
3
-64.96
-178.13
10
A
LEU
4
66.33
-74.80
10
A
ALA
7
-161.31
30.98
10
A
SER
20
-165.14
102.15
10
A
PRO
21
-60.87
76.54
10
A
SER
22
175.98
-51.18
10
A
TYR
30
-142.70
12.46
10
A
SER
33
45.39
-168.16
11
A
SER
2
63.09
-79.43
11
A
LEU
4
65.91
-76.22
11
A
ALA
7
-154.71
30.40
11
A
MET
10
75.80
132.41
11
A
CYS
14
-157.98
-46.25
11
A
SER
19
-154.89
28.81
11
A
PRO
21
-83.95
44.92
11
A
SER
22
-139.56
-48.39
11
A
TYR
30
-148.15
18.05
11
A
SER
33
45.46
-168.58
12
A
SER
2
64.37
-78.76
12
A
LEU
4
65.33
-77.13
12
A
PRO
6
-67.28
-176.12
12
A
ALA
7
-175.03
-38.19
12
A
SER
19
-154.43
32.44
12
A
SER
20
-163.10
107.96
12
A
TYR
30
-153.41
-36.02
12
A
TYR
31
-94.39
-80.65
12
A
SER
33
74.82
130.09
13
A
SER
2
64.58
-78.55
13
A
LYS
5
-177.39
139.23
13
A
SER
33
74.69
161.64
14
A
SER
2
-164.62
-63.50
14
A
LYS
5
-169.20
101.84
14
A
ALA
7
-152.88
31.36
14
A
PHE
9
-153.83
60.44
14
A
MET
10
-160.83
117.65
14
A
SER
19
-154.78
34.94
14
A
SER
22
-144.60
-49.31
14
A
TYR
30
-151.97
20.43
14
A
SER
33
74.81
175.68
15
A
SER
2
60.88
-175.24
15
A
LEU
3
-65.00
-173.01
15
A
LEU
4
70.44
-64.57
15
A
PRO
6
-56.17
92.92
15
A
SER
19
-85.70
31.00
15
A
TYR
31
-94.59
-71.83
15
A
SER
33
45.35
-167.82
16
A
SER
2
64.35
-78.60
16
A
LEU
4
62.09
149.84
16
A
LYS
5
62.49
129.38
16
A
ALA
7
-153.77
28.99
16
A
PHE
9
-155.27
57.38
16
A
CYS
14
-157.38
-49.14
16
A
SER
19
-85.41
40.81
16
A
TYR
30
-145.31
12.98
16
A
CYS
32
-62.48
84.57
16
A
SER
33
74.84
-177.40
17
A
SER
2
63.70
-78.21
17
A
LEU
4
64.52
-78.55
17
A
ALA
7
-174.95
39.88
17
A
PRO
13
-39.83
-39.67
17
A
SER
19
-85.85
30.01
17
A
TYR
30
-141.67
10.83
17
A
TYR
31
-94.53
-72.47
17
A
SER
33
74.68
168.87
18
A
SER
2
67.54
-70.81
18
A
LEU
4
66.58
-75.84
18
A
PRO
6
-71.43
-168.93
18
A
ALA
7
-171.69
-44.24
18
A
PRO
13
-39.71
-37.51
18
A
TYR
31
-94.50
-75.68
18
A
SER
33
45.26
-168.11
19
A
SER
2
-173.63
144.18
19
A
LEU
3
62.26
122.91
19
A
LEU
4
68.35
-70.48
19
A
ALA
7
-157.31
33.78
19
A
PHE
9
-155.02
82.52
19
A
TYR
31
-94.87
-84.03
19
A
SER
33
74.85
118.86
20
A
SER
2
62.88
-80.02
20
A
LEU
4
67.62
-72.64
20
A
PRO
13
-39.75
-38.03
20
A
TYR
31
-94.39
-77.91
20
A
SER
33
45.37
-168.00
SOLUTION STRUCTURE OF THE FIRST ZINC FINGER FROM THE DROSOPHILA U-SHAPED TRANSCRIPTION FACTOR
1
N
N
2
N
N
A
SER
20
A
SER
20
HELX_P
A
TYR
31
A
TYR
31
1
1
12
metalc
2.304
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
37
B
ZN
ZN
1_555
metalc
2.300
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
37
B
ZN
ZN
1_555
metalc
1.996
A
HIS
27
A
NE2
HIS
27
1_555
A
ZN
37
B
ZN
ZN
1_555
metalc
2.300
A
CYS
32
A
SG
CYS
32
1_555
A
ZN
37
B
ZN
ZN
1_555
TRANSCRIPTION
ZINC FINGER, CCHC, PROTEIN INTERACTION, TRANSCRIPTION
USH_DROME
UNP
1
186
Q9VPQ6
EPLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHRI
186
219
1FV5
3
36
Q9VPQ6
A
1
3
36
1
cloning artifact
GLY
1
1FV5
A
Q9VPQ6
UNP
1
1
cloning artifact
SER
2
1FV5
A
Q9VPQ6
UNP
2
BINDING SITE FOR RESIDUE ZN A 37
A
ZN
37
Software
4
A
CYS
11
A
CYS
11
4
1_555
A
CYS
14
A
CYS
14
4
1_555
A
HIS
27
A
HIS
27
4
1_555
A
CYS
32
A
CYS
32
4
1_555
1
P 1