1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Liew, C.K. Kowalski, K. Fox, A.H. Newton, A. Sharpe, B.K. Crossley, M. Mackay, J.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer UK Structure Fold.Des. FODEFH 1263 0969-2126 8 1157 1166 10.1016/S0969-2126(00)00527-X 11080638 Solution structures of two CCHC zinc fingers from the FOG family protein U-shaped that mediate protein-protein interactions. 2000 10.2210/pdb1fv5/pdb pdb_00001fv5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3961.636 FIRST ZINC FINGER OF U-SHAPED FIRST ZINC FINGER DOMAIN (RESIDUES 202-235) 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no GSLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHRI GSLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHRI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n fruit fly Drosophila Escherichia sample 7227 Drosophila melanogaster 562 Escherichia coli PGEX-2T database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-10-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 1FU9 contains the ninth zinc finger of U-shaped RCSB Y RCSB 2000-09-18 REL REL ZN ZINC ION The structure was determined using 2D homonuclear and heteronuclear techniques on unlabelled and 15N-labelled peptide. structures with the lowest energy 500 20 2D NOESY HNHA HNHB 0 5.5 ambient 298 K The structures are based on a total of 356 restraints, 324 are NOE-derived distance constraints and 32 are dihedral angle restraints distance geometry simulated annealing cartesian dynamics 1 lowest energy 0.7mM U-shaped first finger; 95% H2O, 5% D2O 95% H2O/5% D2O 0.7mM U-shaped first finger 15N-labelled; 95% H2O, 5% D2O 95% H2O/5% D2O Guenther collection XwinNMR 2.6 Bartels, Xia, Billeter, Guntert, Wuthrich data analysis XEASY 1.2 Guntert, Mumenthaler, Wuthrich structure solution DYANA 1.5 Warren, Nilges, Kuszewski, Clore, Brunger refinement CNS 1.0 600 Bruker DRX ZN 37 2 ZN ZN 37 A GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A LEU 3 n 3 LEU 3 A LEU 4 n 4 LEU 4 A LYS 5 n 5 LYS 5 A PRO 6 n 6 PRO 6 A ALA 7 n 7 ALA 7 A ARG 8 n 8 ARG 8 A PHE 9 n 9 PHE 9 A MET 10 n 10 MET 10 A CYS 11 n 11 CYS 11 A LEU 12 n 12 LEU 12 A PRO 13 n 13 PRO 13 A CYS 14 n 14 CYS 14 A GLY 15 n 15 GLY 15 A ILE 16 n 16 ILE 16 A ALA 17 n 17 ALA 17 A PHE 18 n 18 PHE 18 A SER 19 n 19 SER 19 A SER 20 n 20 SER 20 A PRO 21 n 21 PRO 21 A SER 22 n 22 SER 22 A THR 23 n 23 THR 23 A LEU 24 n 24 LEU 24 A GLU 25 n 25 GLU 25 A ALA 26 n 26 ALA 26 A HIS 27 n 27 HIS 27 A GLN 28 n 28 GLN 28 A ALA 29 n 29 ALA 29 A TYR 30 n 30 TYR 30 A TYR 31 n 31 TYR 31 A CYS 32 n 32 CYS 32 A SER 33 n 33 SER 33 A HIS 34 n 34 HIS 34 A ARG 35 n 35 ARG 35 A ILE 36 n 36 ILE 36 A author_defined_assembly 1 monomeric A CYS 11 A SG CYS 11 1_555 A ZN 37 B ZN ZN 1_555 A CYS 14 A SG CYS 14 1_555 110.2 A CYS 11 A SG CYS 11 1_555 A ZN 37 B ZN ZN 1_555 A HIS 27 A NE2 HIS 27 1_555 110.0 A CYS 14 A SG CYS 14 1_555 A ZN 37 B ZN ZN 1_555 A HIS 27 A NE2 HIS 27 1_555 109.8 A CYS 11 A SG CYS 11 1_555 A ZN 37 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 108.8 A CYS 14 A SG CYS 14 1_555 A ZN 37 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 110.1 A HIS 27 A NE2 HIS 27 1_555 A ZN 37 B ZN ZN 1_555 A CYS 32 A SG CYS 32 1_555 107.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 4 A A O H LEU GLN 24 28 1.58 5 A A O H LEU GLN 24 28 1.59 13 A A O H LEU GLN 24 28 1.58 13 A A O HG1 SER THR 20 23 1.60 18 A A O H LEU GLN 24 28 1.60 1 A SER 2 65.09 -78.09 1 A LYS 5 -167.58 102.67 1 A ALA 7 -149.09 31.88 1 A PHE 9 -113.28 71.42 1 A SER 19 -154.56 28.40 1 A TYR 30 -142.13 10.70 1 A SER 33 45.42 -167.18 1 A HIS 34 -104.95 77.87 2 A SER 2 63.12 -79.56 2 A MET 10 -163.18 114.06 2 A SER 20 -165.23 110.48 2 A PRO 21 -48.58 170.12 2 A SER 22 69.38 -64.09 2 A SER 33 74.80 -170.11 3 A SER 2 63.04 -79.61 3 A LEU 4 68.06 -72.21 3 A PRO 6 -55.34 -167.91 3 A ALA 7 -163.01 -70.67 3 A PHE 9 -118.00 -159.13 3 A MET 10 74.87 132.61 3 A CYS 14 -157.47 -47.01 3 A SER 19 -154.68 28.65 3 A TYR 30 -143.59 13.52 3 A SER 33 74.79 171.43 4 A SER 2 68.00 -70.13 4 A LEU 4 64.45 -79.19 4 A SER 33 45.42 -168.10 5 A SER 2 59.92 95.39 5 A LEU 3 48.02 -176.38 5 A LEU 4 65.17 -74.15 5 A ALA 7 -166.97 -43.91 5 A PHE 9 -111.26 68.36 5 A CYS 32 -59.80 103.65 5 A SER 33 45.48 -170.64 5 A HIS 34 -105.27 68.96 6 A SER 2 60.64 170.48 6 A LYS 5 -170.55 147.85 6 A ARG 8 63.42 125.28 6 A PHE 9 -106.15 70.39 6 A CYS 14 -161.02 -42.47 6 A PHE 18 -84.75 -88.63 6 A SER 19 174.91 -36.21 6 A CYS 32 -67.02 80.25 6 A SER 33 74.91 175.42 7 A SER 2 63.86 -79.13 7 A LEU 4 69.76 -64.86 7 A PRO 6 -53.87 179.37 7 A ALA 7 -175.06 38.09 7 A PHE 9 -150.33 80.53 7 A TYR 30 -148.03 19.46 8 A SER 2 -177.11 -50.06 8 A LEU 4 -54.99 -172.31 8 A LYS 5 77.65 131.88 8 A CYS 14 -157.83 -43.45 8 A SER 19 -154.82 30.86 8 A TYR 30 -145.56 12.28 8 A CYS 32 -56.45 103.74 8 A SER 33 45.39 -167.79 9 A LEU 4 -177.03 -39.95 9 A PRO 6 -53.09 95.40 9 A SER 19 -154.48 28.31 9 A TYR 30 -149.37 16.14 9 A CYS 32 -57.05 87.95 9 A SER 33 45.20 -90.54 10 A SER 2 60.15 -171.66 10 A LEU 3 -64.96 -178.13 10 A LEU 4 66.33 -74.80 10 A ALA 7 -161.31 30.98 10 A SER 20 -165.14 102.15 10 A PRO 21 -60.87 76.54 10 A SER 22 175.98 -51.18 10 A TYR 30 -142.70 12.46 10 A SER 33 45.39 -168.16 11 A SER 2 63.09 -79.43 11 A LEU 4 65.91 -76.22 11 A ALA 7 -154.71 30.40 11 A MET 10 75.80 132.41 11 A CYS 14 -157.98 -46.25 11 A SER 19 -154.89 28.81 11 A PRO 21 -83.95 44.92 11 A SER 22 -139.56 -48.39 11 A TYR 30 -148.15 18.05 11 A SER 33 45.46 -168.58 12 A SER 2 64.37 -78.76 12 A LEU 4 65.33 -77.13 12 A PRO 6 -67.28 -176.12 12 A ALA 7 -175.03 -38.19 12 A SER 19 -154.43 32.44 12 A SER 20 -163.10 107.96 12 A TYR 30 -153.41 -36.02 12 A TYR 31 -94.39 -80.65 12 A SER 33 74.82 130.09 13 A SER 2 64.58 -78.55 13 A LYS 5 -177.39 139.23 13 A SER 33 74.69 161.64 14 A SER 2 -164.62 -63.50 14 A LYS 5 -169.20 101.84 14 A ALA 7 -152.88 31.36 14 A PHE 9 -153.83 60.44 14 A MET 10 -160.83 117.65 14 A SER 19 -154.78 34.94 14 A SER 22 -144.60 -49.31 14 A TYR 30 -151.97 20.43 14 A SER 33 74.81 175.68 15 A SER 2 60.88 -175.24 15 A LEU 3 -65.00 -173.01 15 A LEU 4 70.44 -64.57 15 A PRO 6 -56.17 92.92 15 A SER 19 -85.70 31.00 15 A TYR 31 -94.59 -71.83 15 A SER 33 45.35 -167.82 16 A SER 2 64.35 -78.60 16 A LEU 4 62.09 149.84 16 A LYS 5 62.49 129.38 16 A ALA 7 -153.77 28.99 16 A PHE 9 -155.27 57.38 16 A CYS 14 -157.38 -49.14 16 A SER 19 -85.41 40.81 16 A TYR 30 -145.31 12.98 16 A CYS 32 -62.48 84.57 16 A SER 33 74.84 -177.40 17 A SER 2 63.70 -78.21 17 A LEU 4 64.52 -78.55 17 A ALA 7 -174.95 39.88 17 A PRO 13 -39.83 -39.67 17 A SER 19 -85.85 30.01 17 A TYR 30 -141.67 10.83 17 A TYR 31 -94.53 -72.47 17 A SER 33 74.68 168.87 18 A SER 2 67.54 -70.81 18 A LEU 4 66.58 -75.84 18 A PRO 6 -71.43 -168.93 18 A ALA 7 -171.69 -44.24 18 A PRO 13 -39.71 -37.51 18 A TYR 31 -94.50 -75.68 18 A SER 33 45.26 -168.11 19 A SER 2 -173.63 144.18 19 A LEU 3 62.26 122.91 19 A LEU 4 68.35 -70.48 19 A ALA 7 -157.31 33.78 19 A PHE 9 -155.02 82.52 19 A TYR 31 -94.87 -84.03 19 A SER 33 74.85 118.86 20 A SER 2 62.88 -80.02 20 A LEU 4 67.62 -72.64 20 A PRO 13 -39.75 -38.03 20 A TYR 31 -94.39 -77.91 20 A SER 33 45.37 -168.00 SOLUTION STRUCTURE OF THE FIRST ZINC FINGER FROM THE DROSOPHILA U-SHAPED TRANSCRIPTION FACTOR 1 N N 2 N N A SER 20 A SER 20 HELX_P A TYR 31 A TYR 31 1 1 12 metalc 2.304 A CYS 11 A SG CYS 11 1_555 A ZN 37 B ZN ZN 1_555 metalc 2.300 A CYS 14 A SG CYS 14 1_555 A ZN 37 B ZN ZN 1_555 metalc 1.996 A HIS 27 A NE2 HIS 27 1_555 A ZN 37 B ZN ZN 1_555 metalc 2.300 A CYS 32 A SG CYS 32 1_555 A ZN 37 B ZN ZN 1_555 TRANSCRIPTION ZINC FINGER, CCHC, PROTEIN INTERACTION, TRANSCRIPTION USH_DROME UNP 1 186 Q9VPQ6 EPLLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHRI 186 219 1FV5 3 36 Q9VPQ6 A 1 3 36 1 cloning artifact GLY 1 1FV5 A Q9VPQ6 UNP 1 1 cloning artifact SER 2 1FV5 A Q9VPQ6 UNP 2 BINDING SITE FOR RESIDUE ZN A 37 A ZN 37 Software 4 A CYS 11 A CYS 11 4 1_555 A CYS 14 A CYS 14 4 1_555 A HIS 27 A HIS 27 4 1_555 A CYS 32 A CYS 32 4 1_555 1 P 1