1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Mauffret, O.
El Amri, C.
Santamaria, F.
Tevanian, G.
Rayner, B.
Fermandjian, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C9 H14 N3 O7 P
307.197
2'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONOPHOSPHATE
L-DNA linking
C10 H14 N5 O7 P
347.221
2'-DEOXY-L-RIBO-FURANOSYL GUANINE-5'-MONOPHOSPHATE
L-DNA linking
C10 H16 N3 O7 P
321.224
n
5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
28
4403
4409
10.1093/nar/28.22.4403
11071926
A two B-Z junction containing DNA resolves into an all right-handed double-helix.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3103.089
5'-D(*(5CM)P*GP*(5CM)P*GP*(0DC)P*(0DG)P*(5CM)P*GP*(5CM)P*G)-3'
2
syn
polymer
no
yes
(5CM)(DG)(5CM)(DG)(0DC)(0DG)(5CM)(DG)(5CM)(DG)
CGCGCGCGCG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
-27.074
1
19
A
1
B
20
-3.799
A_5CM1:DG20_B
1
5.421
0.061
0.499
-0.079
-2.958
1
19
A
2
B
19
-1.153
A_DG2:5CM19_B
2
2.045
-0.205
0.166
-0.222
-15.319
1
19
A
3
B
18
-8.418
A_5CM3:DG18_B
3
-11.220
-0.303
1.496
-0.505
-5.995
1
19
A
4
B
17
1.263
A_DG4:5CM17_B
4
13.802
-0.278
0.290
-0.297
17.754
1
19
A
5
B
16
-1.836
A_0DC5:0DG16_B
5
-6.076
0.197
-0.405
-0.180
-5.688
1
19
A
6
B
15
-2.878
A_0DG6:0DC15_B
6
-6.405
-0.165
0.485
-0.277
-16.653
1
19
A
7
B
14
-1.967
A_5CM7:DG14_B
7
0.885
0.238
0.506
-0.224
2.873
1
19
A
8
B
13
-3.629
A_DG8:5CM13_B
8
-4.259
0.040
0.935
-0.318
10.197
1
19
A
9
B
12
-0.923
A_5CM9:DG12_B
9
10.384
0.186
-0.344
-0.217
27.016
1
19
A
10
B
11
-3.407
A_DG10:5CM11_B
10
21.613
-0.187
0.137
-0.140
2.733
33.398
A
A
1
2
5.267
B
B
20
19
2.707
3.023
0.328
0.360
AA_5CM1DG2:5CM19DG20_BB
1
0.571
-0.995
33.260
0.210
-0.492
4.413
36.195
A
A
2
3
10.087
B
B
19
18
4.277
6.210
-0.904
0.641
AA_DG25CM3:DG185CM19_BB
2
-6.023
9.783
35.179
-0.146
0.313
3.471
36.557
A
A
3
4
-5.664
B
B
18
17
3.445
-3.540
1.284
0.866
AA_5CM3DG4:5CM17DG18_BB
3
4.237
-6.779
36.152
1.899
-1.426
2.928
35.293
A
A
4
5
12.209
B
B
17
16
2.833
7.326
0.602
0.480
AA_DG40DC5:0DG165CM17_BB
4
5.164
-8.605
34.171
-0.179
-0.309
3.678
39.061
A
A
6
7
27.149
B
B
15
14
3.972
17.549
-0.812
0.234
AA_0DG65CM7:DG140DC15_BB
5
-0.006
0.010
35.035
-2.270
1.213
2.796
37.857
A
A
7
8
-13.853
B
B
14
13
2.960
-8.898
-0.914
0.675
AA_5CM7DG8:5CM13DG14_BB
6
-3.287
5.117
36.692
2.062
1.032
3.657
33.814
A
A
8
9
9.972
B
B
13
12
3.531
5.756
0.788
0.618
AA_DG85CM9:DG125CM13_BB
7
4.581
-7.936
33.027
0.028
-0.532
2.767
32.942
A
A
9
10
16.522
B
B
12
11
2.858
9.208
-0.956
-0.359
AA_5CM9DG10:5CM11DG12_BB
8
-5.455
9.788
31.201
-2.021
0.864
repository
Initial release
Version format compliance
Version format compliance
Structure summary
1
0
2000-10-11
1
1
2007-10-16
1
2
2011-07-13
1
3
2017-02-01
RCSB
Y
RCSB
2000-09-19
REL
REL
This structure was determined using standard 2D homonuclear techniques
lower energy structures, restraints violations, and the average structure
50
11
2D NOESY
P-COSY
TOCSY
0.1
7
293
K
the structures are based on a total of 504 restraints, 390 are NOE-derived distance constraints, 104 dihedral angle restraints,36 distance restraints from hydrogen bonds.
simulated annealing, torsion angle dynamics
10
2 mM DNA; 0.1 M phosphate Buffer
MSI
data analysis
FELIX
BRUNGER et al., 1998
refinement
CNS
500
Bruker
AMX
5CM
1
n
1
5CM
1
A
DG
2
n
2
DG
2
A
5CM
3
n
3
5CM
3
A
DG
4
n
4
DG
4
A
0DC
5
n
5
0DC
5
A
0DG
6
n
6
0DG
6
A
5CM
7
n
7
5CM
7
A
DG
8
n
8
DG
8
A
5CM
9
n
9
5CM
9
A
DG
10
n
10
DG
10
A
5CM
11
n
1
5CM
11
B
DG
12
n
2
DG
12
B
5CM
13
n
3
5CM
13
B
DG
14
n
4
DG
14
B
0DC
15
n
5
0DC
15
B
0DG
16
n
6
0DG
16
B
5CM
17
n
7
5CM
17
B
DG
18
n
8
DG
18
B
5CM
19
n
9
5CM
19
B
DG
20
n
10
DG
20
B
author_defined_assembly
2
dimeric
A
5CM
1
A
5CM
1
DC
A
5CM
3
A
5CM
3
DC
A
5CM
7
A
5CM
7
DC
A
5CM
9
A
5CM
9
DC
B
5CM
11
B
5CM
1
DC
B
5CM
13
B
5CM
3
DC
B
5CM
17
B
5CM
7
DC
B
5CM
19
B
5CM
9
DC
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
5'-D(*CP*GP*CP*GP*(0DC)P*(0DG)P*CP*GP*CP*G)-3'
A TWO B-Z JUNCTION CONTAINING DNA RESOLVES INTO AN ALL RIGHT HANDED DOUBLE HELIX
1
N
N
1
N
N
covale
1.608
A
DG
4
A
O3'
DG
4
1_555
A
0DC
5
A
P
0DC
5
1_555
covale
1.609
A
0DC
5
A
O3'
0DC
5
1_555
A
0DG
6
A
P
0DG
6
1_555
covale
1.610
B
DG
14
B
O3'
DG
4
1_555
B
0DC
15
B
P
0DC
5
1_555
covale
1.608
B
0DC
15
B
O3'
0DC
5
1_555
B
0DG
16
B
P
0DG
6
1_555
covale
1.608
A
5CM
1
A
O3'
5CM
1
1_555
A
DG
2
A
P
DG
2
1_555
covale
1.609
A
DG
2
A
O3'
DG
2
1_555
A
5CM
3
A
P
5CM
3
1_555
covale
1.609
A
5CM
3
A
O3'
5CM
3
1_555
A
DG
4
A
P
DG
4
1_555
covale
1.609
A
0DG
6
A
O3'
0DG
6
1_555
A
5CM
7
A
P
5CM
7
1_555
covale
1.609
A
5CM
7
A
O3'
5CM
7
1_555
A
DG
8
A
P
DG
8
1_555
covale
1.609
A
DG
8
A
O3'
DG
8
1_555
A
5CM
9
A
P
5CM
9
1_555
covale
1.609
A
5CM
9
A
O3'
5CM
9
1_555
A
DG
10
A
P
DG
10
1_555
covale
1.608
B
5CM
11
B
O3'
5CM
1
1_555
B
DG
12
B
P
DG
2
1_555
covale
1.609
B
DG
12
B
O3'
DG
2
1_555
B
5CM
13
B
P
5CM
3
1_555
covale
1.609
B
5CM
13
B
O3'
5CM
3
1_555
B
DG
14
B
P
DG
4
1_555
covale
1.608
B
0DG
16
B
O3'
0DG
6
1_555
B
5CM
17
B
P
5CM
7
1_555
covale
1.608
B
5CM
17
B
O3'
5CM
7
1_555
B
DG
18
B
P
DG
8
1_555
covale
1.608
B
DG
18
B
O3'
DG
8
1_555
B
5CM
19
B
P
5CM
9
1_555
covale
1.609
B
5CM
19
B
O3'
5CM
9
1_555
B
DG
20
B
P
DG
10
1_555
hydrog
WATSON-CRICK
A
5CM
1
A
N3
5CM
1
1_555
B
DG
20
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
5CM
1
A
N4
5CM
1
1_555
B
DG
20
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
5CM
1
A
O2
5CM
1
1_555
B
DG
20
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
5CM
19
B
N3
5CM
9
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
5CM
19
B
O2
5CM
9
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
5CM
19
B
N4
5CM
9
1_555
hydrog
5CM-5CM MISPAIR
A
5CM
3
A
N4
5CM
3
1_555
B
5CM
17
B
N3
5CM
7
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
N3
5CM
3
1_555
B
DG
18
B
N1
DG
8
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
N4
5CM
3
1_555
B
DG
18
B
O6
DG
8
1_555
hydrog
WATSON-CRICK
A
5CM
3
A
O2
5CM
3
1_555
B
DG
18
B
N2
DG
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
5CM
17
B
N3
5CM
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
5CM
17
B
O2
5CM
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
5CM
17
B
N4
5CM
7
1_555
hydrog
WATSON-CRICK
A
0DC
5
A
N3
0DC
5
1_555
B
0DG
16
B
N1
0DG
6
1_555
hydrog
WATSON-CRICK
A
0DC
5
A
N4
0DC
5
1_555
B
0DG
16
B
O6
0DG
6
1_555
hydrog
WATSON-CRICK
A
0DC
5
A
O2
0DC
5
1_555
B
0DG
16
B
N2
0DG
6
1_555
hydrog
WATSON-CRICK
A
0DG
6
A
N1
0DG
6
1_555
B
0DC
15
B
N3
0DC
5
1_555
hydrog
WATSON-CRICK
A
0DG
6
A
N2
0DG
6
1_555
B
0DC
15
B
O2
0DC
5
1_555
hydrog
WATSON-CRICK
A
0DG
6
A
O6
0DG
6
1_555
B
0DC
15
B
N4
0DC
5
1_555
hydrog
WATSON-CRICK
A
5CM
7
A
N3
5CM
7
1_555
B
DG
14
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
5CM
7
A
N4
5CM
7
1_555
B
DG
14
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
5CM
7
A
O2
5CM
7
1_555
B
DG
14
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N1
DG
8
1_555
B
5CM
13
B
N3
5CM
3
1_555
hydrog
WATSON-CRICK
A
DG
8
A
N2
DG
8
1_555
B
5CM
13
B
O2
5CM
3
1_555
hydrog
WATSON-CRICK
A
DG
8
A
O6
DG
8
1_555
B
5CM
13
B
N4
5CM
3
1_555
hydrog
WATSON-CRICK
A
5CM
9
A
N3
5CM
9
1_555
B
DG
12
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
5CM
9
A
N4
5CM
9
1_555
B
DG
12
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
5CM
9
A
O2
5CM
9
1_555
B
DG
12
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
5CM
11
B
N3
5CM
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
5CM
11
B
O2
5CM
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
5CM
11
B
N4
5CM
1
1_555
DNA
DNA POLYMORPHISM, L ENANTIOMERY, ANTISENSE, DNA
1fv7
pdb
1
1
1fv7
CGCGCGCGCG
1
10
1fv7
1
10
A
1
1
10
11
20
1fv7
11
20
B
1
1
10
1
P 1