0.020760
0.000000
0.000000
0.000000
0.017112
0.000000
0.000000
0.000000
0.009824
0.00000
0.00000
0.00000
Odell, M.
Sriskanda, V.
Shuman, S.
Nikolov, D.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.0
90.0
90.0
48.17
58.44
101.79
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Mol.Cell
MOCEFL
2168
1097-2765
6
1183
1193
10.1016/S1097-2765(00)00115-5
11106756
Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining.
2000
10.2210/pdb1fvi/pdb
pdb_00001fvi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
1.0
34124.195
CHLORELLA VIRUS DNA LIGASE-ADENYLATE
6.5.1.-
D29A
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
347.221
ADENOSINE MONOPHOSPHATE
1
syn
non-polymer
18.015
water
280
nat
water
no
no
AITKPLLAATLENIEDVQFPCLATPKIAGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSA
VMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFE
GVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD
GVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR
AITKPLLAATLENIEDVQFPCLATPKIAGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSA
VMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFE
GVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD
GVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chlorovirus
Escherichia
Escherichia coli
sample
10507
Chlorella virus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
1
2.10
41.39
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2000-11-22
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-09-20
REL
SO4
SULFATE ION
AMP
ADENOSINE MONOPHOSPHATE
HOH
water
SO4
510
2
SO4
SO4
510
A
AMP
501
3
AMP
AMP
501
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
643
4
HOH
HOH
643
A
HOH
644
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
HOH
684
4
HOH
HOH
684
A
HOH
685
4
HOH
HOH
685
A
HOH
686
4
HOH
HOH
686
A
HOH
687
4
HOH
HOH
687
A
HOH
688
4
HOH
HOH
688
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
HOH
694
4
HOH
HOH
694
A
HOH
695
4
HOH
HOH
695
A
HOH
696
4
HOH
HOH
696
A
HOH
697
4
HOH
HOH
697
A
HOH
698
4
HOH
HOH
698
A
HOH
699
4
HOH
HOH
699
A
HOH
700
4
HOH
HOH
700
A
HOH
701
4
HOH
HOH
701
A
HOH
702
4
HOH
HOH
702
A
HOH
703
4
HOH
HOH
703
A
HOH
704
4
HOH
HOH
704
A
HOH
705
4
HOH
HOH
705
A
HOH
706
4
HOH
HOH
706
A
HOH
707
4
HOH
HOH
707
A
HOH
708
4
HOH
HOH
708
A
HOH
709
4
HOH
HOH
709
A
HOH
710
4
HOH
HOH
710
A
HOH
711
4
HOH
HOH
711
A
HOH
712
4
HOH
HOH
712
A
HOH
713
4
HOH
HOH
713
A
HOH
714
4
HOH
HOH
714
A
HOH
715
4
HOH
HOH
715
A
HOH
716
4
HOH
HOH
716
A
HOH
717
4
HOH
HOH
717
A
HOH
718
4
HOH
HOH
718
A
HOH
719
4
HOH
HOH
719
A
HOH
720
4
HOH
HOH
720
A
HOH
721
4
HOH
HOH
721
A
HOH
722
4
HOH
HOH
722
A
HOH
723
4
HOH
HOH
723
A
HOH
724
4
HOH
HOH
724
A
HOH
725
4
HOH
HOH
725
A
HOH
726
4
HOH
HOH
726
A
HOH
727
4
HOH
HOH
727
A
HOH
728
4
HOH
HOH
728
A
HOH
729
4
HOH
HOH
729
A
HOH
730
4
HOH
HOH
730
A
HOH
731
4
HOH
HOH
731
A
HOH
732
4
HOH
HOH
732
A
HOH
733
4
HOH
HOH
733
A
HOH
734
4
HOH
HOH
734
A
HOH
735
4
HOH
HOH
735
A
HOH
736
4
HOH
HOH
736
A
HOH
737
4
HOH
HOH
737
A
HOH
738
4
HOH
HOH
738
A
HOH
739
4
HOH
HOH
739
A
HOH
740
4
HOH
HOH
740
A
HOH
741
4
HOH
HOH
741
A
HOH
742
4
HOH
HOH
742
A
HOH
743
4
HOH
HOH
743
A
HOH
744
4
HOH
HOH
744
A
HOH
745
4
HOH
HOH
745
A
HOH
746
4
HOH
HOH
746
A
HOH
747
4
HOH
HOH
747
A
HOH
748
4
HOH
HOH
748
A
HOH
749
4
HOH
HOH
749
A
HOH
750
4
HOH
HOH
750
A
HOH
751
4
HOH
HOH
751
A
HOH
752
4
HOH
HOH
752
A
HOH
753
4
HOH
HOH
753
A
HOH
754
4
HOH
HOH
754
A
HOH
755
4
HOH
HOH
755
A
HOH
756
4
HOH
HOH
756
A
HOH
757
4
HOH
HOH
757
A
HOH
758
4
HOH
HOH
758
A
HOH
759
4
HOH
HOH
759
A
HOH
760
4
HOH
HOH
760
A
HOH
761
4
HOH
HOH
761
A
HOH
762
4
HOH
HOH
762
A
HOH
763
4
HOH
HOH
763
A
HOH
764
4
HOH
HOH
764
A
HOH
765
4
HOH
HOH
765
A
HOH
766
4
HOH
HOH
766
A
HOH
767
4
HOH
HOH
767
A
HOH
768
4
HOH
HOH
768
A
HOH
769
4
HOH
HOH
769
A
HOH
770
4
HOH
HOH
770
A
HOH
771
4
HOH
HOH
771
A
HOH
772
4
HOH
HOH
772
A
HOH
773
4
HOH
HOH
773
A
HOH
774
4
HOH
HOH
774
A
HOH
775
4
HOH
HOH
775
A
HOH
776
4
HOH
HOH
776
A
HOH
777
4
HOH
HOH
777
A
HOH
778
4
HOH
HOH
778
A
HOH
779
4
HOH
HOH
779
A
HOH
780
4
HOH
HOH
780
A
HOH
781
4
HOH
HOH
781
A
HOH
782
4
HOH
HOH
782
A
HOH
783
4
HOH
HOH
783
A
HOH
784
4
HOH
HOH
784
A
HOH
785
4
HOH
HOH
785
A
HOH
786
4
HOH
HOH
786
A
HOH
787
4
HOH
HOH
787
A
HOH
788
4
HOH
HOH
788
A
HOH
789
4
HOH
HOH
789
A
HOH
790
4
HOH
HOH
790
A
HOH
791
4
HOH
HOH
791
A
HOH
792
4
HOH
HOH
792
A
HOH
793
4
HOH
HOH
793
A
HOH
794
4
HOH
HOH
794
A
HOH
795
4
HOH
HOH
795
A
HOH
796
4
HOH
HOH
796
A
HOH
797
4
HOH
HOH
797
A
HOH
798
4
HOH
HOH
798
A
HOH
799
4
HOH
HOH
799
A
HOH
800
4
HOH
HOH
800
A
HOH
801
4
HOH
HOH
801
A
HOH
802
4
HOH
HOH
802
A
HOH
803
4
HOH
HOH
803
A
HOH
804
4
HOH
HOH
804
A
HOH
805
4
HOH
HOH
805
A
HOH
806
4
HOH
HOH
806
A
HOH
807
4
HOH
HOH
807
A
HOH
808
4
HOH
HOH
808
A
HOH
809
4
HOH
HOH
809
A
HOH
810
4
HOH
HOH
810
A
HOH
811
4
HOH
HOH
811
A
HOH
812
4
HOH
HOH
812
A
HOH
813
4
HOH
HOH
813
A
HOH
814
4
HOH
HOH
814
A
HOH
815
4
HOH
HOH
815
A
HOH
816
4
HOH
HOH
816
A
HOH
817
4
HOH
HOH
817
A
HOH
818
4
HOH
HOH
818
A
HOH
819
4
HOH
HOH
819
A
HOH
820
4
HOH
HOH
820
A
HOH
821
4
HOH
HOH
821
A
HOH
822
4
HOH
HOH
822
A
HOH
823
4
HOH
HOH
823
A
HOH
824
4
HOH
HOH
824
A
HOH
825
4
HOH
HOH
825
A
HOH
826
4
HOH
HOH
826
A
HOH
827
4
HOH
HOH
827
A
HOH
828
4
HOH
HOH
828
A
HOH
829
4
HOH
HOH
829
A
HOH
830
4
HOH
HOH
830
A
HOH
831
4
HOH
HOH
831
A
HOH
832
4
HOH
HOH
832
A
HOH
833
4
HOH
HOH
833
A
HOH
834
4
HOH
HOH
834
A
HOH
835
4
HOH
HOH
835
A
HOH
836
4
HOH
HOH
836
A
HOH
837
4
HOH
HOH
837
A
HOH
838
4
HOH
HOH
838
A
HOH
839
4
HOH
HOH
839
A
HOH
840
4
HOH
HOH
840
A
HOH
841
4
HOH
HOH
841
A
HOH
842
4
HOH
HOH
842
A
HOH
843
4
HOH
HOH
843
A
HOH
844
4
HOH
HOH
844
A
HOH
845
4
HOH
HOH
845
A
HOH
846
4
HOH
HOH
846
A
HOH
847
4
HOH
HOH
847
A
HOH
848
4
HOH
HOH
848
A
HOH
849
4
HOH
HOH
849
A
HOH
850
4
HOH
HOH
850
A
HOH
851
4
HOH
HOH
851
A
HOH
852
4
HOH
HOH
852
A
HOH
853
4
HOH
HOH
853
A
HOH
854
4
HOH
HOH
854
A
HOH
855
4
HOH
HOH
855
A
HOH
856
4
HOH
HOH
856
A
HOH
857
4
HOH
HOH
857
A
HOH
858
4
HOH
HOH
858
A
HOH
859
4
HOH
HOH
859
A
HOH
860
4
HOH
HOH
860
A
HOH
861
4
HOH
HOH
861
A
HOH
862
4
HOH
HOH
862
A
HOH
863
4
HOH
HOH
863
A
HOH
864
4
HOH
HOH
864
A
HOH
865
4
HOH
HOH
865
A
HOH
866
4
HOH
HOH
866
A
HOH
867
4
HOH
HOH
867
A
HOH
868
4
HOH
HOH
868
A
HOH
869
4
HOH
HOH
869
A
HOH
870
4
HOH
HOH
870
A
HOH
871
4
HOH
HOH
871
A
HOH
872
4
HOH
HOH
872
A
HOH
873
4
HOH
HOH
873
A
HOH
874
4
HOH
HOH
874
A
HOH
875
4
HOH
HOH
875
A
HOH
876
4
HOH
HOH
876
A
HOH
877
4
HOH
HOH
877
A
HOH
878
4
HOH
HOH
878
A
HOH
879
4
HOH
HOH
879
A
HOH
880
4
HOH
HOH
880
A
ALA
2
n
1
ALA
2
A
ILE
3
n
2
ILE
3
A
THR
4
n
3
THR
4
A
LYS
5
n
4
LYS
5
A
PRO
6
n
5
PRO
6
A
LEU
7
n
6
LEU
7
A
LEU
8
n
7
LEU
8
A
ALA
9
n
8
ALA
9
A
ALA
10
n
9
ALA
10
A
THR
11
n
10
THR
11
A
LEU
12
n
11
LEU
12
A
GLU
13
n
12
GLU
13
A
ASN
14
n
13
ASN
14
A
ILE
15
n
14
ILE
15
A
GLU
16
n
15
GLU
16
A
ASP
17
n
16
ASP
17
A
VAL
18
n
17
VAL
18
A
GLN
19
n
18
GLN
19
A
PHE
20
n
19
PHE
20
A
PRO
21
n
20
PRO
21
A
CYS
22
n
21
CYS
22
A
LEU
23
n
22
LEU
23
A
ALA
24
n
23
ALA
24
A
THR
25
n
24
THR
25
A
PRO
26
n
25
PRO
26
A
LYS
27
n
26
LYS
27
A
ILE
28
n
27
ILE
28
A
ALA
29
n
28
ALA
29
A
GLY
30
n
29
GLY
30
A
ILE
31
n
30
ILE
31
A
ARG
32
n
31
ARG
32
A
SER
33
n
32
SER
33
A
VAL
34
n
33
VAL
34
A
LYS
35
n
34
LYS
35
A
GLN
36
n
35
GLN
36
A
THR
37
n
36
THR
37
A
GLN
38
n
37
GLN
38
A
MET
39
n
38
MET
39
A
LEU
40
n
39
LEU
40
A
SER
41
n
40
SER
41
A
ARG
42
n
41
ARG
42
A
THR
43
n
42
THR
43
A
PHE
44
n
43
PHE
44
A
LYS
45
n
44
LYS
45
A
PRO
46
n
45
PRO
46
A
ILE
47
n
46
ILE
47
A
ARG
48
n
47
ARG
48
A
ASN
49
n
48
ASN
49
A
SER
50
n
49
SER
50
A
VAL
51
n
50
VAL
51
A
MET
52
n
51
MET
52
A
ASN
53
n
52
ASN
53
A
ARG
54
n
53
ARG
54
A
LEU
55
n
54
LEU
55
A
LEU
56
n
55
LEU
56
A
THR
57
n
56
THR
57
A
GLU
58
n
57
GLU
58
A
LEU
59
n
58
LEU
59
A
LEU
60
n
59
LEU
60
A
PRO
61
n
60
PRO
61
A
GLU
62
n
61
GLU
62
A
GLY
63
n
62
GLY
63
A
SER
64
n
63
SER
64
A
ASP
65
n
64
ASP
65
A
GLY
66
n
65
GLY
66
A
GLU
67
n
66
GLU
67
A
ILE
68
n
67
ILE
68
A
SER
69
n
68
SER
69
A
ILE
70
n
69
ILE
70
A
GLU
71
n
70
GLU
71
A
GLY
72
n
71
GLY
72
A
ALA
73
n
72
ALA
73
A
THR
74
n
73
THR
74
A
PHE
75
n
74
PHE
75
A
GLN
76
n
75
GLN
76
A
ASP
77
n
76
ASP
77
A
THR
78
n
77
THR
78
A
THR
79
n
78
THR
79
A
SER
80
n
79
SER
80
A
ALA
81
n
80
ALA
81
A
VAL
82
n
81
VAL
82
A
MET
83
n
82
MET
83
A
THR
84
n
83
THR
84
A
GLY
85
n
84
GLY
85
A
HIS
86
n
85
HIS
86
A
n
86
87
A
n
87
88
A
n
88
89
A
n
89
90
A
ALA
91
n
90
ALA
91
A
LYS
92
n
91
LYS
92
A
PHE
93
n
92
PHE
93
A
SER
94
n
93
SER
94
A
TYR
95
n
94
TYR
95
A
TYR
96
n
95
TYR
96
A
TRP
97
n
96
TRP
97
A
PHE
98
n
97
PHE
98
A
ASP
99
n
98
ASP
99
A
TYR
100
n
99
TYR
100
A
VAL
101
n
100
VAL
101
A
THR
102
n
101
THR
102
A
ASP
103
n
102
ASP
103
A
ASP
104
n
103
ASP
104
A
PRO
105
n
104
PRO
105
A
LEU
106
n
105
LEU
106
A
LYS
107
n
106
LYS
107
A
LYS
108
n
107
LYS
108
A
TYR
109
n
108
TYR
109
A
ILE
110
n
109
ILE
110
A
ASP
111
n
110
ASP
111
A
ARG
112
n
111
ARG
112
A
VAL
113
n
112
VAL
113
A
GLU
114
n
113
GLU
114
A
ASP
115
n
114
ASP
115
A
MET
116
n
115
MET
116
A
LYS
117
n
116
LYS
117
A
ASN
118
n
117
ASN
118
A
TYR
119
n
118
TYR
119
A
ILE
120
n
119
ILE
120
A
THR
121
n
120
THR
121
A
VAL
122
n
121
VAL
122
A
HIS
123
n
122
HIS
123
A
PRO
124
n
123
PRO
124
A
HIS
125
n
124
HIS
125
A
ILE
126
n
125
ILE
126
A
LEU
127
n
126
LEU
127
A
GLU
128
n
127
GLU
128
A
HIS
129
n
128
HIS
129
A
ALA
130
n
129
ALA
130
A
GLN
131
n
130
GLN
131
A
VAL
132
n
131
VAL
132
A
LYS
133
n
132
LYS
133
A
ILE
134
n
133
ILE
134
A
ILE
135
n
134
ILE
135
A
PRO
136
n
135
PRO
136
A
LEU
137
n
136
LEU
137
A
ILE
138
n
137
ILE
138
A
PRO
139
n
138
PRO
139
A
VAL
140
n
139
VAL
140
A
GLU
141
n
140
GLU
141
A
ILE
142
n
141
ILE
142
A
ASN
143
n
142
ASN
143
A
ASN
144
n
143
ASN
144
A
ILE
145
n
144
ILE
145
A
THR
146
n
145
THR
146
A
GLU
147
n
146
GLU
147
A
LEU
148
n
147
LEU
148
A
LEU
149
n
148
LEU
149
A
GLN
150
n
149
GLN
150
A
TYR
151
n
150
TYR
151
A
GLU
152
n
151
GLU
152
A
ARG
153
n
152
ARG
153
A
ASP
154
n
153
ASP
154
A
VAL
155
n
154
VAL
155
A
LEU
156
n
155
LEU
156
A
SER
157
n
156
SER
157
A
LYS
158
n
157
LYS
158
A
GLY
159
n
158
GLY
159
A
PHE
160
n
159
PHE
160
A
GLU
161
n
160
GLU
161
A
GLY
162
n
161
GLY
162
A
VAL
163
n
162
VAL
163
A
MET
164
n
163
MET
164
A
ILE
165
n
164
ILE
165
A
ARG
166
n
165
ARG
166
A
LYS
167
n
166
LYS
167
A
PRO
168
n
167
PRO
168
A
ASP
169
n
168
ASP
169
A
GLY
170
n
169
GLY
170
A
LYS
171
n
170
LYS
171
A
TYR
172
n
171
TYR
172
A
LYS
173
n
172
LYS
173
A
PHE
174
n
173
PHE
174
A
GLY
175
n
174
GLY
175
A
ARG
176
n
175
ARG
176
A
SER
177
n
176
SER
177
A
THR
178
n
177
THR
178
A
LEU
179
n
178
LEU
179
A
LYS
180
n
179
LYS
180
A
GLU
181
n
180
GLU
181
A
GLY
182
n
181
GLY
182
A
ILE
183
n
182
ILE
183
A
LEU
184
n
183
LEU
184
A
LEU
185
n
184
LEU
185
A
LYS
186
n
185
LYS
186
A
MET
187
n
186
MET
187
A
LYS
188
n
187
LYS
188
A
GLN
189
n
188
GLN
189
A
PHE
190
n
189
PHE
190
A
LYS
191
n
190
LYS
191
A
ASP
192
n
191
ASP
192
A
ALA
193
n
192
ALA
193
A
GLU
194
n
193
GLU
194
A
ALA
195
n
194
ALA
195
A
THR
196
n
195
THR
196
A
ILE
197
n
196
ILE
197
A
ILE
198
n
197
ILE
198
A
SER
199
n
198
SER
199
A
MET
200
n
199
MET
200
A
THR
201
n
200
THR
201
A
ALA
202
n
201
ALA
202
A
LEU
203
n
202
LEU
203
A
PHE
204
n
203
PHE
204
A
LYS
205
n
204
LYS
205
A
n
205
206
A
n
206
207
A
n
207
208
A
n
208
209
A
n
209
210
A
n
210
211
A
n
211
212
A
n
212
213
A
n
213
214
A
n
214
215
A
n
215
216
A
n
216
217
A
n
217
218
A
n
218
219
A
n
219
220
A
n
220
221
A
n
221
222
A
n
222
223
A
n
223
224
A
SER
225
n
224
SER
225
A
GLY
226
n
225
GLY
226
A
LYS
227
n
226
LYS
227
A
VAL
228
n
227
VAL
228
A
GLU
229
n
228
GLU
229
A
GLU
230
n
229
GLU
230
A
ASP
231
n
230
ASP
231
A
VAL
232
n
231
VAL
232
A
MET
233
n
232
MET
233
A
GLY
234
n
233
GLY
234
A
SER
235
n
234
SER
235
A
ILE
236
n
235
ILE
236
A
GLU
237
n
236
GLU
237
A
VAL
238
n
237
VAL
238
A
ASP
239
n
238
ASP
239
A
TYR
240
n
239
TYR
240
A
ASP
241
n
240
ASP
241
A
GLY
242
n
241
GLY
242
A
VAL
243
n
242
VAL
243
A
VAL
244
n
243
VAL
244
A
PHE
245
n
244
PHE
245
A
SER
246
n
245
SER
246
A
ILE
247
n
246
ILE
247
A
GLY
248
n
247
GLY
248
A
THR
249
n
248
THR
249
A
GLY
250
n
249
GLY
250
A
PHE
251
n
250
PHE
251
A
ASP
252
n
251
ASP
252
A
ALA
253
n
252
ALA
253
A
ASP
254
n
253
ASP
254
A
GLN
255
n
254
GLN
255
A
ARG
256
n
255
ARG
256
A
ARG
257
n
256
ARG
257
A
ASP
258
n
257
ASP
258
A
PHE
259
n
258
PHE
259
A
TRP
260
n
259
TRP
260
A
GLN
261
n
260
GLN
261
A
ASN
262
n
261
ASN
262
A
LYS
263
n
262
LYS
263
A
GLU
264
n
263
GLU
264
A
SER
265
n
264
SER
265
A
TYR
266
n
265
TYR
266
A
ILE
267
n
266
ILE
267
A
GLY
268
n
267
GLY
268
A
LYS
269
n
268
LYS
269
A
MET
270
n
269
MET
270
A
VAL
271
n
270
VAL
271
A
LYS
272
n
271
LYS
272
A
PHE
273
n
272
PHE
273
A
LYS
274
n
273
LYS
274
A
TYR
275
n
274
TYR
275
A
PHE
276
n
275
PHE
276
A
GLU
277
n
276
GLU
277
A
MET
278
n
277
MET
278
A
n
278
279
A
n
279
280
A
n
280
281
A
n
281
282
A
n
282
283
A
PRO
284
n
283
PRO
284
A
ARG
285
n
284
ARG
285
A
PHE
286
n
285
PHE
286
A
PRO
287
n
286
PRO
287
A
VAL
288
n
287
VAL
288
A
PHE
289
n
288
PHE
289
A
ILE
290
n
289
ILE
290
A
GLY
291
n
290
GLY
291
A
ILE
292
n
291
ILE
292
A
ARG
293
n
292
ARG
293
A
n
293
294
A
n
294
295
A
n
295
296
A
n
296
297
A
n
297
298
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
10
A
O
ALA
9
A
N
LYS
186
A
N
LYS
185
A
N
MET
187
A
N
MET
186
A
O
VAL
163
A
O
VAL
162
A
O
ARG
166
A
O
ARG
165
A
N
LEU
23
A
N
LEU
22
A
N
ALA
24
A
N
ALA
23
A
O
VAL
140
A
O
VAL
139
A
N
LEU
40
A
N
LEU
39
A
O
VAL
34
A
O
VAL
33
A
N
LYS
35
A
N
LYS
34
A
O
SER
64
A
O
SER
63
A
O
SER
69
A
O
SER
68
A
N
SER
94
A
N
SER
93
A
O
PHE
93
A
O
PHE
92
A
N
LYS
133
A
N
LYS
132
A
N
ILE
247
A
N
ILE
246
A
O
ILE
236
A
O
ILE
235
A
O
GLU
237
A
O
GLU
236
A
N
ILE
198
A
N
ILE
197
A
O
ALA
195
A
O
ALA
194
A
N
VAL
271
A
N
VAL
270
A
N
PHE
276
A
N
PHE
275
A
O
ARG
285
A
O
ARG
284
1
A
LYS
87
A
LYS
86
1
Y
1
A
MET
88
A
MET
87
1
Y
1
A
TYR
89
A
TYR
88
1
Y
1
A
ASN
90
A
ASN
89
1
Y
1
A
ASN
206
A
ASN
205
1
Y
1
A
THR
207
A
THR
206
1
Y
1
A
ASN
208
A
ASN
207
1
Y
1
A
THR
209
A
THR
208
1
Y
1
A
LYS
210
A
LYS
209
1
Y
1
A
THR
211
A
THR
210
1
Y
1
A
LYS
212
A
LYS
211
1
Y
1
A
ASP
213
A
ASP
212
1
Y
1
A
ASN
214
A
ASN
213
1
Y
1
A
PHE
215
A
PHE
214
1
Y
1
A
GLY
216
A
GLY
215
1
Y
1
A
TYR
217
A
TYR
216
1
Y
1
A
SER
218
A
SER
217
1
Y
1
A
LYS
219
A
LYS
218
1
Y
1
A
ARG
220
A
ARG
219
1
Y
1
A
SER
221
A
SER
220
1
Y
1
A
THR
222
A
THR
221
1
Y
1
A
HIS
223
A
HIS
222
1
Y
1
A
LYS
224
A
LYS
223
1
Y
1
A
GLY
279
A
GLY
278
1
Y
1
A
SER
280
A
SER
279
1
Y
1
A
LYS
281
A
LYS
280
1
Y
1
A
ASP
282
A
ASP
281
1
Y
1
A
CYS
283
A
CYS
282
1
Y
1
A
HIS
294
A
HIS
293
1
Y
1
A
GLU
295
A
GLU
294
1
Y
1
A
GLU
296
A
GLU
295
1
Y
1
A
ASP
297
A
ASP
296
1
Y
1
A
ARG
298
A
ARG
297
1
Y
1
20.93
2.70
111.00
131.93
A
A
A
N
CA
C
PHE
PHE
PHE
20
20
20
N
1
-11.40
1.50
119.30
107.90
A
A
A
C
N
CA
PHE
PRO
PRO
20
21
21
Y
1
A
PRO
21
-66.65
99.38
1
A
THR
37
80.27
-46.44
1
A
GLU
71
-23.61
-74.73
1
A
THR
102
72.87
-67.36
1
A
ASP
103
-151.03
-81.00
1
A
PHE
204
-96.70
43.99
1
A
VAL
228
-47.43
-16.54
1
A
TYR
240
52.69
78.82
0.2700000
0.1900000
2.0
6.0
1125
18470
18130
random
1
1.5
1.5
Engh & Huber
2.0
6.0
280
2430
27
0
2123
0.008
1.548
phasing
MLPHARE
refinement
X-PLOR
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE
1
N
N
2
N
N
3
N
N
4
N
N
A
ASN
14
A
ASN
13
HELX_P
A
VAL
18
A
VAL
17
5
1
5
A
ASN
49
A
ASN
48
HELX_P
A
LEU
60
A
LEU
59
1
2
12
A
THR
74
A
THR
73
HELX_P
A
THR
84
A
THR
83
1
3
11
A
LYS
108
A
LYS
107
HELX_P
A
HIS
123
A
HIS
122
1
4
16
A
PRO
124
A
PRO
123
HELX_P
A
HIS
129
A
HIS
128
5
5
6
A
ASN
144
A
ASN
143
HELX_P
A
LYS
158
A
LYS
157
1
6
15
A
ASP
252
A
ASP
251
HELX_P
A
ASN
262
A
ASN
261
1
7
11
A
ASN
262
A
ASN
261
HELX_P
A
ILE
267
A
ILE
266
1
8
6
covale
1.473
one
A
LYS
27
A
NZ
LYS
26
1_555
A
AMP
501
C
P
AMP
1_555
LIGASE
adenylated DNA ligase, LIGASE
O41026_CHVP1
UNP
1
2
O41026
AITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSA
VMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFE
GVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD
GVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR
2
298
1FVI
2
298
O41026
A
1
1
297
1
ASP
engineered mutation
ALA
29
1FVI
A
O41026
UNP
29
28
5
5
5
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ALA
10
A
ALA
9
A
THR
11
A
THR
10
A
LEU
185
A
LEU
184
A
MET
187
A
MET
186
A
VAL
163
A
VAL
162
A
ARG
166
A
ARG
165
A
CYS
22
A
CYS
21
A
PRO
26
A
PRO
25
A
VAL
140
A
VAL
139
A
ILE
142
A
ILE
141
A
MET
39
A
MET
38
A
LEU
40
A
LEU
39
A
ILE
31
A
ILE
30
A
LYS
35
A
LYS
34
A
SER
64
A
SER
63
A
SER
69
A
SER
68
A
PHE
93
A
PHE
92
A
TYR
100
A
TYR
99
A
VAL
132
A
VAL
131
A
PRO
136
A
PRO
135
A
PHE
245
A
PHE
244
A
ILE
247
A
ILE
246
A
MET
233
A
MET
232
A
VAL
238
A
VAL
237
A
LYS
191
A
LYS
190
A
ALA
202
A
ALA
201
A
MET
270
A
MET
269
A
PHE
276
A
PHE
275
A
ARG
285
A
ARG
284
A
ILE
292
A
ILE
291
BINDING SITE FOR RESIDUE SO4 A 510
A
SO4
510
Software
10
BINDING SITE FOR RESIDUE AMP A 501
A
AMP
501
Software
19
A
PHE
20
A
PHE
19
10
4_556
A
ARG
42
A
ARG
41
10
1_555
A
ASN
144
A
ASN
143
10
4_556
A
ILE
145
A
ILE
144
10
4_556
A
ARG
176
A
ARG
175
10
1_555
A
LYS
186
A
LYS
185
10
1_555
A
AMP
501
C
AMP
10
1_555
A
HOH
607
D
HOH
10
1_555
A
HOH
757
D
HOH
10
1_555
A
HOH
808
D
HOH
10
1_555
A
PHE
20
A
PHE
19
19
4_556
A
THR
25
A
THR
24
19
1_555
A
PRO
26
A
PRO
25
19
1_555
A
LYS
27
A
LYS
26
19
1_555
A
ILE
28
A
ILE
27
19
1_555
A
ARG
32
A
ARG
31
19
1_555
A
GLU
67
A
GLU
66
19
1_555
A
PHE
98
A
PHE
97
19
1_555
A
LEU
137
A
LEU
136
19
1_555
A
MET
164
A
MET
163
19
1_555
A
LYS
186
A
LYS
185
19
1_555
A
SO4
510
B
SO4
19
1_555
A
HOH
607
D
HOH
19
1_555
A
HOH
668
D
HOH
19
4_556
A
HOH
683
D
HOH
19
1_555
A
HOH
717
D
HOH
19
1_555
A
HOH
757
D
HOH
19
1_555
A
HOH
821
D
HOH
19
1_555
A
HOH
822
D
HOH
19
1_555
19
P 21 21 21