0.025247 0.000000 0.000000 0.000000 0.024297 0.000000 0.000000 0.000000 0.010036 0.00000 0.00000 0.00000 Liu, Y. Misulovin, Z. Bjorkman, P.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 39.608 41.158 99.646 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H12 O5 164.156 alpha-L-fucopyranose L-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H17 N O6 235.234 n methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside D-saccharide C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C6 H12 O9 S 260.219 n 3-O-sulfo-beta-D-galactopyranose D-saccharide, beta linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 305 481 490 10.1006/jmbi.2000.4326 11152606 The molecular mechanism of sulfated carbohydrate recognition by the cysteine-rich domain of mannose receptor. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 120 1 IMAGE PLATE 2000-02-21 RIGAKU RAXIS II SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 COMPLEXED WITH 3-SO4-LEWIS(A) 15445.328 CYSTEINE-RICH DOMAIN OF MANNOSE RECEPTOR N-TERMINAL DOMAIN OF MANNOSE RECEPTOR 1 man polymer 623.579 3-O-sulfo-beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside 1 man branched 18.015 water 127 nat water no no DARQFLIYNEDHKRCVDALSAISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKW ECKNDTLFGIKGTELYFNYGNRQEKNIKLYKGSGLWSRWKVYGTTDDLCSRGYE DARQFLIYNEDHKRCVDALSAISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKW ECKNDTLFGIKGTELYFNYGNRQEKNIKLYKGSGLWSRWKVYGTTDDLCSRGYE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus pig Sus sample 10090 Mus musculus 293 CELLS 9823 Sus scrofa 1 2.63 53.21 VAPOR DIFFUSION, HANGING DROP 7.0 PEG 8000, (NH4)2SO4, pH 6.5-7.5 , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 atom_site chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_unobs_or_zero_occ_atoms struct_asym struct_conn struct_site struct_site_gen repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Advisory Atomic model Data collection Derived calculations Structure summary 1 0 2001-01-17 1 1 2008-04-27 1 2 2011-07-13 2 0 2020-07-29 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_value_order _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id MAG 2002 n B MAG 1 SGA 2001 n B SGA 2 FUC 2003 n B FUC 3 LFucpa a-L-fucopyranose a-L-Fucp Fuc DGlcpNAc[1Me]b 1-methyl-N-acetyl-b-D-glucopyranose a-methyl-N-acetyl-D-glucosamine DGalp[3S]b 3-sulfo-b-D-galactopyranose b-D-Galp3SO3 crystal structure of the cysteine-rich domain of mannose receptor RCSB Y RCSB 2000-09-24 REL oligosaccharide DGalp[3S]b1-3[LFucpa1-4]DGlcpNAc[1Me]b1-OME 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,3,2/[a2122h-1b_1-5_1*OC_2*NCC/3=O][a2112h-1b_1-5_3*OSO/3=O/3=O][a1221m-1a_1-5]/1-2-3/a3-b1_a4-c1 2 PDB2Glycan 1.1.0 WURCS [][b-D-GlcpNAc]{[(3+1)][b-D-Galp3SO3]{}[(4+1)][a-L-Fucp]{}} 2 PDB-CARE LINUCS C1 O3 SGA MAG 2 1 2 O1 HO3 sing C1 O4 FUC MAG 3 1 2 O1 HO4 sing n n n HOH water HOH 1 3 HOH HOH 2004 A HOH 2 3 HOH HOH 2005 A HOH 3 3 HOH HOH 2006 A HOH 4 3 HOH HOH 2007 A HOH 5 3 HOH HOH 2008 A HOH 6 3 HOH HOH 2009 A HOH 7 3 HOH HOH 2010 A HOH 8 3 HOH HOH 2011 A HOH 9 3 HOH HOH 2012 A HOH 10 3 HOH HOH 2013 A HOH 11 3 HOH HOH 2014 A HOH 12 3 HOH HOH 2015 A HOH 13 3 HOH HOH 2016 A HOH 14 3 HOH HOH 2017 A HOH 15 3 HOH HOH 2018 A HOH 16 3 HOH HOH 2019 A HOH 17 3 HOH HOH 2020 A HOH 18 3 HOH HOH 2021 A HOH 19 3 HOH HOH 2022 A HOH 20 3 HOH HOH 2023 A HOH 21 3 HOH HOH 2024 A HOH 22 3 HOH HOH 2025 A HOH 23 3 HOH HOH 2026 A HOH 24 3 HOH HOH 2027 A HOH 25 3 HOH HOH 2028 A HOH 26 3 HOH HOH 2029 A HOH 27 3 HOH HOH 2030 A HOH 28 3 HOH HOH 2031 A HOH 29 3 HOH HOH 2032 A HOH 30 3 HOH HOH 2033 A HOH 31 3 HOH HOH 2034 A HOH 32 3 HOH HOH 2035 A HOH 33 3 HOH HOH 2036 A HOH 34 3 HOH HOH 2037 A HOH 35 3 HOH HOH 2038 A HOH 36 3 HOH HOH 2039 A HOH 37 3 HOH HOH 2040 A HOH 38 3 HOH HOH 2041 A HOH 39 3 HOH HOH 2042 A HOH 40 3 HOH HOH 2043 A HOH 41 3 HOH HOH 2044 A HOH 42 3 HOH HOH 2045 A HOH 43 3 HOH HOH 2046 A HOH 44 3 HOH HOH 2047 A HOH 45 3 HOH HOH 2048 A HOH 46 3 HOH HOH 2049 A HOH 47 3 HOH HOH 2050 A HOH 48 3 HOH HOH 2051 A HOH 49 3 HOH HOH 2052 A HOH 50 3 HOH HOH 2053 A HOH 51 3 HOH HOH 2054 A HOH 52 3 HOH HOH 2055 A HOH 53 3 HOH HOH 2056 A HOH 54 3 HOH HOH 2057 A HOH 55 3 HOH HOH 2058 A HOH 56 3 HOH HOH 2059 A HOH 57 3 HOH HOH 2060 A HOH 58 3 HOH HOH 2061 A HOH 59 3 HOH HOH 2062 A HOH 60 3 HOH HOH 2063 A HOH 61 3 HOH HOH 2064 A HOH 62 3 HOH HOH 2065 A HOH 63 3 HOH HOH 2066 A HOH 64 3 HOH HOH 2067 A HOH 65 3 HOH HOH 2068 A HOH 66 3 HOH HOH 2069 A HOH 67 3 HOH HOH 2070 A HOH 68 3 HOH HOH 2071 A HOH 69 3 HOH HOH 2072 A HOH 70 3 HOH HOH 2073 A HOH 71 3 HOH HOH 2074 A HOH 72 3 HOH HOH 2075 A HOH 73 3 HOH HOH 2076 A HOH 74 3 HOH HOH 2077 A HOH 75 3 HOH HOH 2078 A HOH 76 3 HOH HOH 2079 A HOH 77 3 HOH HOH 2080 A HOH 78 3 HOH HOH 2081 A HOH 79 3 HOH HOH 2082 A HOH 80 3 HOH HOH 2083 A HOH 81 3 HOH HOH 2084 A HOH 82 3 HOH HOH 2085 A HOH 83 3 HOH HOH 2086 A HOH 84 3 HOH HOH 2087 A HOH 85 3 HOH HOH 2088 A HOH 86 3 HOH HOH 2089 A HOH 87 3 HOH HOH 2090 A HOH 88 3 HOH HOH 2091 A HOH 89 3 HOH HOH 2092 A HOH 90 3 HOH HOH 2093 A HOH 91 3 HOH HOH 2094 A HOH 92 3 HOH HOH 2095 A HOH 93 3 HOH HOH 2096 A HOH 94 3 HOH HOH 2097 A HOH 95 3 HOH HOH 2098 A HOH 96 3 HOH HOH 2099 A HOH 97 3 HOH HOH 2100 A HOH 98 3 HOH HOH 2101 A HOH 99 3 HOH HOH 2102 A HOH 100 3 HOH HOH 2103 A HOH 101 3 HOH HOH 2104 A HOH 102 3 HOH HOH 2105 A HOH 103 3 HOH HOH 2106 A HOH 104 3 HOH HOH 2107 A HOH 105 3 HOH HOH 2108 A HOH 106 3 HOH HOH 2109 A HOH 107 3 HOH HOH 2110 A HOH 108 3 HOH HOH 2111 A HOH 109 3 HOH HOH 2112 A HOH 110 3 HOH HOH 2113 A HOH 111 3 HOH HOH 2114 A HOH 112 3 HOH HOH 2115 A HOH 113 3 HOH HOH 2116 A HOH 114 3 HOH HOH 2117 A HOH 115 3 HOH HOH 2118 A HOH 116 3 HOH HOH 2119 A HOH 117 3 HOH HOH 2120 A HOH 118 3 HOH HOH 2121 A HOH 119 3 HOH HOH 2122 A HOH 120 3 HOH HOH 2123 A HOH 121 3 HOH HOH 2124 A HOH 122 3 HOH HOH 2125 A HOH 123 3 HOH HOH 2126 A HOH 124 3 HOH HOH 2127 A HOH 125 3 HOH HOH 2128 A HOH 126 3 HOH HOH 2129 A HOH 127 3 HOH HOH 2130 A ASP 2 n 1 ASP 2 A ALA 3 n 2 ALA 3 A ARG 4 n 3 ARG 4 A GLN 5 n 4 GLN 5 A PHE 6 n 5 PHE 6 A LEU 7 n 6 LEU 7 A ILE 8 n 7 ILE 8 A TYR 9 n 8 TYR 9 A ASN 10 n 9 ASN 10 A GLU 11 n 10 GLU 11 A ASP 12 n 11 ASP 12 A HIS 13 n 12 HIS 13 A LYS 14 n 13 LYS 14 A ARG 15 n 14 ARG 15 A CYS 16 n 15 CYS 16 A VAL 17 n 16 VAL 17 A ASP 18 n 17 ASP 18 A ALA 19 n 18 ALA 19 A LEU 20 n 19 LEU 20 A SER 21 n 20 SER 21 A ALA 22 n 21 ALA 22 A ILE 23 n 22 ILE 23 A SER 24 n 23 SER 24 A VAL 25 n 24 VAL 25 A GLN 26 n 25 GLN 26 A THR 27 n 26 THR 27 A ALA 28 n 27 ALA 28 A THR 29 n 28 THR 29 A CYS 30 n 29 CYS 30 A ASN 31 n 30 ASN 31 A PRO 32 n 31 PRO 32 A GLU 33 n 32 GLU 33 A ALA 34 n 33 ALA 34 A GLU 35 n 34 GLU 35 A SER 36 n 35 SER 36 A GLN 37 n 36 GLN 37 A LYS 38 n 37 LYS 38 A PHE 39 n 38 PHE 39 A ARG 40 n 39 ARG 40 A TRP 41 n 40 TRP 41 A VAL 42 n 41 VAL 42 A SER 43 n 42 SER 43 A ASP 44 n 43 ASP 44 A SER 45 n 44 SER 45 A GLN 46 n 45 GLN 46 A ILE 47 n 46 ILE 47 A MET 48 n 47 MET 48 A SER 49 n 48 SER 49 A VAL 50 n 49 VAL 50 A ALA 51 n 50 ALA 51 A PHE 52 n 51 PHE 52 A LYS 53 n 52 LYS 53 A LEU 54 n 53 LEU 54 A CYS 55 n 54 CYS 55 A LEU 56 n 55 LEU 56 A GLY 57 n 56 GLY 57 A VAL 58 n 57 VAL 58 A PRO 59 n 58 PRO 59 A SER 60 n 59 SER 60 A LYS 61 n 60 LYS 61 A THR 62 n 61 THR 62 A ASP 63 n 62 ASP 63 A TRP 64 n 63 TRP 64 A ALA 65 n 64 ALA 65 A SER 66 n 65 SER 66 A VAL 67 n 66 VAL 67 A THR 68 n 67 THR 68 A LEU 69 n 68 LEU 69 A TYR 70 n 69 TYR 70 A ALA 71 n 70 ALA 71 A CYS 72 n 71 CYS 72 A ASP 73 n 72 ASP 73 A SER 74 n 73 SER 74 A LYS 75 n 74 LYS 75 A SER 76 n 75 SER 76 A GLU 77 n 76 GLU 77 A TYR 78 n 77 TYR 78 A GLN 79 n 78 GLN 79 A LYS 80 n 79 LYS 80 A TRP 81 n 80 TRP 81 A GLU 82 n 81 GLU 82 A CYS 83 n 82 CYS 83 A LYS 84 n 83 LYS 84 A ASN 85 n 84 ASN 85 A ASP 86 n 85 ASP 86 A THR 87 n 86 THR 87 A LEU 88 n 87 LEU 88 A PHE 89 n 88 PHE 89 A GLY 90 n 89 GLY 90 A ILE 91 n 90 ILE 91 A LYS 92 n 91 LYS 92 A GLY 93 n 92 GLY 93 A THR 94 n 93 THR 94 A GLU 95 n 94 GLU 95 A LEU 96 n 95 LEU 96 A TYR 97 n 96 TYR 97 A PHE 98 n 97 PHE 98 A ASN 99 n 98 ASN 99 A TYR 100 n 99 TYR 100 A GLY 101 n 100 GLY 101 A ASN 102 n 101 ASN 102 A ARG 103 n 102 ARG 103 A GLN 104 n 103 GLN 104 A GLU 105 n 104 GLU 105 A LYS 106 n 105 LYS 106 A ASN 107 n 106 ASN 107 A ILE 108 n 107 ILE 108 A LYS 109 n 108 LYS 109 A LEU 110 n 109 LEU 110 A TYR 111 n 110 TYR 111 A LYS 112 n 111 LYS 112 A GLY 113 n 112 GLY 113 A SER 114 n 113 SER 114 A GLY 115 n 114 GLY 115 A LEU 116 n 115 LEU 116 A TRP 117 n 116 TRP 117 A SER 118 n 117 SER 118 A ARG 119 n 118 ARG 119 A TRP 120 n 119 TRP 120 A LYS 121 n 120 LYS 121 A VAL 122 n 121 VAL 122 A TYR 123 n 122 TYR 123 A GLY 124 n 123 GLY 124 A THR 125 n 124 THR 125 A THR 126 n 125 THR 126 A ASP 127 n 126 ASP 127 A ASP 128 n 127 ASP 128 A LEU 129 n 128 LEU 129 A CYS 130 n 129 CYS 130 A SER 131 n 130 SER 131 A ARG 132 n 131 ARG 132 A GLY 133 n 132 GLY 133 A TYR 134 n 133 TYR 134 A GLU 135 n 134 GLU 135 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 28 A O ALA 27 A N CYS 16 A N CYS 15 A N VAL 17 A N VAL 16 A O ILE 8 A O ILE 7 A N TYR 9 A N TYR 8 A O LYS 121 A O LYS 120 A O ARG 40 A O ARG 39 A N MET 48 A N MET 47 A N SER 49 A N SER 48 A O LEU 54 A O LEU 53 A N GLY 57 A N GLY 56 A O THR 68 A O THR 67 A N GLU 82 A N GLU 81 A O GLY 90 A O GLY 89 A O ASN 99 A O ASN 98 A N LYS 109 A N LYS 108 1 B CM MAG 1 B CM MAG 1 1 N 1 A A O O HOH HOH 2018 2087 2.10 1 A GLN 26 -119.03 -145.43 1 A SER 43 -171.50 -178.13 1 A THR 68 -129.50 -152.54 1 A LYS 84 -91.96 -139.42 1 A GLU 95 -97.21 42.28 1 A GLN 104 49.92 25.85 0.23 0.208 0.205 0.205 2.2 25.0 505 8470 7965 6.3 random 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT Engh & Huber 2.2 25.0 127 1252 40 0 1085 0.0067 1.27 32.7 2.2 25.0 1FWV 8862 8538 0 0 0.034 1 31 7.6 96.5 0.081 2.20 2.28 2.9 89.1 data reduction DENZO data scaling SCALEPACK refinement CNS phasing CNS CYSTEINE-RICH DOMAIN OF MANNOSE RECEPTOR CRYSTAL STRUCTURE OF THE CYSTEINE-RICH DOMAIN OF MANNOSE RECEPTOR COMPLEXED WITH 3-SO4-LEWIS(A) 1 N N 2 N N 3 N N A ALA 34 A ALA 33 HELX_P A GLN 37 A GLN 36 5 1 4 A GLY 115 A GLY 114 HELX_P A SER 118 A SER 117 5 2 4 A ASP 128 A ASP 127 HELX_P A GLY 133 A GLY 132 5 3 6 disulf 2.030 A CYS 16 A SG CYS 15 1_555 A CYS 30 A SG CYS 29 1_555 disulf 2.032 A CYS 55 A SG CYS 54 1_555 A CYS 72 A SG CYS 71 1_555 disulf 2.034 A CYS 83 A SG CYS 82 1_555 A CYS 130 A SG CYS 129 1_555 covale 1.440 both sing B MAG 1 B O3 MAG 1_555 B SGA 2 B C1 SGA 1_555 covale 1.444 both sing B MAG 1 B O4 MAG 1_555 B FUC 3 B C1 FUC 1_555 SUGAR BINDING PROTEIN beta trefoil, mannose receptor, sulfated carbohydrate, SUGAR BINDING PROTEIN A48925 PIR 1 21 A48925 DARQFLIYNEDHKRCVDALSAISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSKTDWASVTLYACDSKSEYQKW ECKNDTLFGIKGTELYFNYGNRQEKNIKLYKGSGLWSRWKVYGTTDDLCSRGYE 21 154 1FWV 2 135 A48925 A 1 1 134 4 4 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 24 A SER 23 A ALA 28 A ALA 27 A ARG 15 A ARG 14 A SER 21 A SER 20 A ILE 8 A ILE 7 A ASN 10 A ASN 9 A LYS 121 A LYS 120 A VAL 122 A VAL 121 A PHE 39 A PHE 38 A TRP 41 A TRP 40 A ILE 47 A ILE 46 A SER 49 A SER 48 A LEU 54 A LEU 53 A GLY 57 A GLY 56 A THR 68 A THR 67 A TYR 70 A TYR 69 A TRP 81 A TRP 80 A CYS 83 A CYS 82 A PHE 89 A PHE 88 A ILE 91 A ILE 90 A TYR 97 A TYR 96 A ASN 99 A ASN 98 A LYS 109 A LYS 108 A TYR 111 A TYR 110 19 orthorhombic P 21 21 21