0.011842
0.006837
0.000000
0.000000
0.013674
0.000000
0.000000
0.000000
0.006248
0.00000
0.00000
0.00000
Duewel, H.S.
Radaev, S.
Wang, J.
Woodard, R.W.
Gatti, D.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
84.445
84.445
160.057
C5 H13 O8 P
232.126
ARABINOSE-5-PHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C3 H5 O6 P
168.042
PHOSPHOENOLPYRUVATE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
R
C
N
4
N
O
N
5
S
C
N
6
N
O
N
7
R
C
N
8
N
O
N
9
N
C
N
10
N
O
N
11
N
P
N
12
N
O
N
13
N
O
N
14
N
O
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
N
N
29
S
C
N
30
N
C
N
31
N
O
N
32
N
C
N
33
N
O
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
C
N
48
N
N
N
49
N
C
N
50
N
N
N
51
N
N
N
52
N
O
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
N
N
69
S
C
N
70
N
C
N
71
N
O
N
72
N
C
N
73
N
C
N
74
N
O
N
75
N
N
N
76
N
O
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
N
N
86
S
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
O
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
N
N
102
R
C
N
103
N
C
N
104
N
O
N
105
N
C
N
106
N
S
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
S
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
C
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
S
C
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
O
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
S
C
N
166
N
C
N
167
N
O
N
168
N
C
Y
169
N
C
Y
170
N
N
Y
171
N
C
Y
172
N
C
Y
173
N
N
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
O
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
S
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
N
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
S
N
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
C
N
278
N
O
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
O
N
283
N
P
N
284
N
O
N
285
N
O
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
R
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
doub
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
doub
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
doub
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
Y
288
N
doub
Y
289
N
sing
Y
290
N
sing
N
291
N
sing
Y
292
N
doub
N
293
N
sing
Y
294
N
doub
N
295
N
sing
Y
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
doub
Y
362
N
sing
Y
363
N
sing
N
364
N
sing
Y
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
8393
8402
10.1074/jbc.M007884200
11115499
Substrate and metal complexes of 3-deoxy-D-manno-octulosonate-8-phosphate synthase from Aquifex aeolicus at 1.9-A resolution. Implications for the condensation mechanism.
2001
10.2210/pdb1fxq/pdb
pdb_00001fxq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2000-06-02
RIGAKU RAXIS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
29774.406
2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
4.1.2.16
2
man
polymer
168.042
PHOSPHOENOLPYRUVATE
2
syn
non-polymer
232.126
ARABINOSE-5-PHOSPHATE
2
syn
non-polymer
18.015
water
204
nat
water
KDO8P SYNTHASE, PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE, 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE, KDO-8-PHOSPHATE SYNTHETASE
E.C.4.1.2.16
no
no
MEKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITT
DIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGY
NNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPL
SQLEGIIEAILEIREVASKYYETIPVK
MEKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITT
DIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGY
NNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPL
SQLEGIIEAILEIREVASKYYETIPVK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aquifex
Escherichia
sample
63363
Aquifex aeolicus
562
Escherichia coli
PLASMID
PAAKDSA
1
2.77
55.52
VAPOR DIFFUSION, HANGING DROP
4.8
100 mM Na-acetate, 6% PEG 4000, pH 4.8, VAPOR DIFFUSION, HANGING DROP at 278K, temperature 278.0K
278.0
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
1
0
2001-04-21
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-09-26
REL
REL
PEP
PHOSPHOENOLPYRUVATE
A5P
ARABINOSE-5-PHOSPHATE
HOH
water
PEP
1268
2
PEP
PEP
1268
A
A5P
1269
3
A5P
A5P
1269
A
PEP
2268
2
PEP
PEP
2268
B
A5P
2269
3
A5P
A5P
2269
B
HOH
3001
4
HOH
HOH
3001
A
HOH
3002
4
HOH
HOH
3002
A
HOH
3004
4
HOH
HOH
3004
A
HOH
3005
4
HOH
HOH
3005
A
HOH
3007
4
HOH
HOH
3007
A
HOH
3008
4
HOH
HOH
3008
A
HOH
3012
4
HOH
HOH
3012
A
HOH
3014
4
HOH
HOH
3014
A
HOH
3015
4
HOH
HOH
3015
A
HOH
3016
4
HOH
HOH
3016
A
HOH
3019
4
HOH
HOH
3019
A
HOH
3021
4
HOH
HOH
3021
A
HOH
3022
4
HOH
HOH
3022
A
HOH
3025
4
HOH
HOH
3025
A
HOH
3026
4
HOH
HOH
3026
A
HOH
3028
4
HOH
HOH
3028
A
HOH
3029
4
HOH
HOH
3029
A
HOH
3030
4
HOH
HOH
3030
A
HOH
3032
4
HOH
HOH
3032
A
HOH
3034
4
HOH
HOH
3034
A
HOH
3037
4
HOH
HOH
3037
A
HOH
3039
4
HOH
HOH
3039
A
HOH
3041
4
HOH
HOH
3041
A
HOH
3042
4
HOH
HOH
3042
A
HOH
3043
4
HOH
HOH
3043
A
HOH
3046
4
HOH
HOH
3046
A
HOH
3047
4
HOH
HOH
3047
A
HOH
3049
4
HOH
HOH
3049
A
HOH
3051
4
HOH
HOH
3051
A
HOH
3053
4
HOH
HOH
3053
A
HOH
3056
4
HOH
HOH
3056
A
HOH
3057
4
HOH
HOH
3057
A
HOH
3063
4
HOH
HOH
3063
A
HOH
3065
4
HOH
HOH
3065
A
HOH
3071
4
HOH
HOH
3071
A
HOH
3072
4
HOH
HOH
3072
A
HOH
3073
4
HOH
HOH
3073
A
HOH
3075
4
HOH
HOH
3075
A
HOH
3077
4
HOH
HOH
3077
A
HOH
3078
4
HOH
HOH
3078
A
HOH
3080
4
HOH
HOH
3080
A
HOH
3081
4
HOH
HOH
3081
A
HOH
3082
4
HOH
HOH
3082
A
HOH
3083
4
HOH
HOH
3083
A
HOH
3084
4
HOH
HOH
3084
A
HOH
3085
4
HOH
HOH
3085
A
HOH
3087
4
HOH
HOH
3087
A
HOH
3090
4
HOH
HOH
3090
A
HOH
3091
4
HOH
HOH
3091
A
HOH
3094
4
HOH
HOH
3094
A
HOH
3095
4
HOH
HOH
3095
A
HOH
3096
4
HOH
HOH
3096
A
HOH
3097
4
HOH
HOH
3097
A
HOH
3098
4
HOH
HOH
3098
A
HOH
3099
4
HOH
HOH
3099
A
HOH
3100
4
HOH
HOH
3100
A
HOH
3101
4
HOH
HOH
3101
A
HOH
3104
4
HOH
HOH
3104
A
HOH
3107
4
HOH
HOH
3107
A
HOH
3108
4
HOH
HOH
3108
A
HOH
3109
4
HOH
HOH
3109
A
HOH
3112
4
HOH
HOH
3112
A
HOH
3115
4
HOH
HOH
3115
A
HOH
3122
4
HOH
HOH
3122
A
HOH
3123
4
HOH
HOH
3123
A
HOH
3125
4
HOH
HOH
3125
A
HOH
3128
4
HOH
HOH
3128
A
HOH
3129
4
HOH
HOH
3129
A
HOH
3130
4
HOH
HOH
3130
A
HOH
3132
4
HOH
HOH
3132
A
HOH
3133
4
HOH
HOH
3133
A
HOH
3136
4
HOH
HOH
3136
A
HOH
3140
4
HOH
HOH
3140
A
HOH
3145
4
HOH
HOH
3145
A
HOH
3146
4
HOH
HOH
3146
A
HOH
3149
4
HOH
HOH
3149
A
HOH
3152
4
HOH
HOH
3152
A
HOH
3155
4
HOH
HOH
3155
A
HOH
3157
4
HOH
HOH
3157
A
HOH
3158
4
HOH
HOH
3158
A
HOH
3161
4
HOH
HOH
3161
A
HOH
3162
4
HOH
HOH
3162
A
HOH
3166
4
HOH
HOH
3166
A
HOH
3168
4
HOH
HOH
3168
A
HOH
3170
4
HOH
HOH
3170
A
HOH
3172
4
HOH
HOH
3172
A
HOH
3174
4
HOH
HOH
3174
A
HOH
3177
4
HOH
HOH
3177
A
HOH
3178
4
HOH
HOH
3178
A
HOH
3181
4
HOH
HOH
3181
A
HOH
3183
4
HOH
HOH
3183
A
HOH
3185
4
HOH
HOH
3185
A
HOH
3187
4
HOH
HOH
3187
A
HOH
3188
4
HOH
HOH
3188
A
HOH
3192
4
HOH
HOH
3192
A
HOH
3195
4
HOH
HOH
3195
A
HOH
3198
4
HOH
HOH
3198
A
HOH
3199
4
HOH
HOH
3199
A
HOH
3201
4
HOH
HOH
3201
A
HOH
3202
4
HOH
HOH
3202
A
HOH
3205
4
HOH
HOH
3205
A
HOH
3206
4
HOH
HOH
3206
A
HOH
3207
4
HOH
HOH
3207
A
HOH
3210
4
HOH
HOH
3210
A
HOH
3211
4
HOH
HOH
3211
A
HOH
3212
4
HOH
HOH
3212
A
HOH
3003
4
HOH
HOH
3003
B
HOH
3006
4
HOH
HOH
3006
B
HOH
3009
4
HOH
HOH
3009
B
HOH
3010
4
HOH
HOH
3010
B
HOH
3011
4
HOH
HOH
3011
B
HOH
3013
4
HOH
HOH
3013
B
HOH
3017
4
HOH
HOH
3017
B
HOH
3018
4
HOH
HOH
3018
B
HOH
3020
4
HOH
HOH
3020
B
HOH
3023
4
HOH
HOH
3023
B
HOH
3027
4
HOH
HOH
3027
B
HOH
3031
4
HOH
HOH
3031
B
HOH
3033
4
HOH
HOH
3033
B
HOH
3035
4
HOH
HOH
3035
B
HOH
3036
4
HOH
HOH
3036
B
HOH
3038
4
HOH
HOH
3038
B
HOH
3040
4
HOH
HOH
3040
B
HOH
3044
4
HOH
HOH
3044
B
HOH
3045
4
HOH
HOH
3045
B
HOH
3048
4
HOH
HOH
3048
B
HOH
3050
4
HOH
HOH
3050
B
HOH
3052
4
HOH
HOH
3052
B
HOH
3054
4
HOH
HOH
3054
B
HOH
3055
4
HOH
HOH
3055
B
HOH
3058
4
HOH
HOH
3058
B
HOH
3059
4
HOH
HOH
3059
B
HOH
3060
4
HOH
HOH
3060
B
HOH
3061
4
HOH
HOH
3061
B
HOH
3062
4
HOH
HOH
3062
B
HOH
3064
4
HOH
HOH
3064
B
HOH
3066
4
HOH
HOH
3066
B
HOH
3067
4
HOH
HOH
3067
B
HOH
3068
4
HOH
HOH
3068
B
HOH
3069
4
HOH
HOH
3069
B
HOH
3070
4
HOH
HOH
3070
B
HOH
3074
4
HOH
HOH
3074
B
HOH
3076
4
HOH
HOH
3076
B
HOH
3079
4
HOH
HOH
3079
B
HOH
3088
4
HOH
HOH
3088
B
HOH
3092
4
HOH
HOH
3092
B
HOH
3093
4
HOH
HOH
3093
B
HOH
3102
4
HOH
HOH
3102
B
HOH
3103
4
HOH
HOH
3103
B
HOH
3105
4
HOH
HOH
3105
B
HOH
3110
4
HOH
HOH
3110
B
HOH
3111
4
HOH
HOH
3111
B
HOH
3113
4
HOH
HOH
3113
B
HOH
3114
4
HOH
HOH
3114
B
HOH
3116
4
HOH
HOH
3116
B
HOH
3117
4
HOH
HOH
3117
B
HOH
3118
4
HOH
HOH
3118
B
HOH
3119
4
HOH
HOH
3119
B
HOH
3120
4
HOH
HOH
3120
B
HOH
3121
4
HOH
HOH
3121
B
HOH
3124
4
HOH
HOH
3124
B
HOH
3126
4
HOH
HOH
3126
B
HOH
3127
4
HOH
HOH
3127
B
HOH
3131
4
HOH
HOH
3131
B
HOH
3134
4
HOH
HOH
3134
B
HOH
3135
4
HOH
HOH
3135
B
HOH
3137
4
HOH
HOH
3137
B
HOH
3138
4
HOH
HOH
3138
B
HOH
3139
4
HOH
HOH
3139
B
HOH
3141
4
HOH
HOH
3141
B
HOH
3142
4
HOH
HOH
3142
B
HOH
3143
4
HOH
HOH
3143
B
HOH
3144
4
HOH
HOH
3144
B
HOH
3147
4
HOH
HOH
3147
B
HOH
3148
4
HOH
HOH
3148
B
HOH
3150
4
HOH
HOH
3150
B
HOH
3153
4
HOH
HOH
3153
B
HOH
3154
4
HOH
HOH
3154
B
HOH
3156
4
HOH
HOH
3156
B
HOH
3160
4
HOH
HOH
3160
B
HOH
3163
4
HOH
HOH
3163
B
HOH
3164
4
HOH
HOH
3164
B
HOH
3165
4
HOH
HOH
3165
B
HOH
3167
4
HOH
HOH
3167
B
HOH
3169
4
HOH
HOH
3169
B
HOH
3171
4
HOH
HOH
3171
B
HOH
3173
4
HOH
HOH
3173
B
HOH
3175
4
HOH
HOH
3175
B
HOH
3176
4
HOH
HOH
3176
B
HOH
3179
4
HOH
HOH
3179
B
HOH
3180
4
HOH
HOH
3180
B
HOH
3182
4
HOH
HOH
3182
B
HOH
3184
4
HOH
HOH
3184
B
HOH
3186
4
HOH
HOH
3186
B
HOH
3189
4
HOH
HOH
3189
B
HOH
3190
4
HOH
HOH
3190
B
HOH
3191
4
HOH
HOH
3191
B
HOH
3193
4
HOH
HOH
3193
B
HOH
3194
4
HOH
HOH
3194
B
HOH
3196
4
HOH
HOH
3196
B
HOH
3197
4
HOH
HOH
3197
B
HOH
3200
4
HOH
HOH
3200
B
HOH
3203
4
HOH
HOH
3203
B
HOH
3209
4
HOH
HOH
3209
B
n
1
1001
A
GLU
1002
n
2
GLU
1002
A
LYS
1003
n
3
LYS
1003
A
PHE
1004
n
4
PHE
1004
A
LEU
1005
n
5
LEU
1005
A
VAL
1006
n
6
VAL
1006
A
ILE
1007
n
7
ILE
1007
A
ALA
1008
n
8
ALA
1008
A
GLY
1009
n
9
GLY
1009
A
PRO
1010
n
10
PRO
1010
A
CYS
1011
n
11
CYS
1011
A
ALA
1012
n
12
ALA
1012
A
ILE
1013
n
13
ILE
1013
A
GLU
1014
n
14
GLU
1014
A
SER
1015
n
15
SER
1015
A
GLU
1016
n
16
GLU
1016
A
GLU
1017
n
17
GLU
1017
A
LEU
1018
n
18
LEU
1018
A
LEU
1019
n
19
LEU
1019
A
LEU
1020
n
20
LEU
1020
A
LYS
1021
n
21
LYS
1021
A
VAL
1022
n
22
VAL
1022
A
GLY
1023
n
23
GLY
1023
A
GLU
1024
n
24
GLU
1024
A
GLU
1025
n
25
GLU
1025
A
ILE
1026
n
26
ILE
1026
A
LYS
1027
n
27
LYS
1027
A
ARG
1028
n
28
ARG
1028
A
LEU
1029
n
29
LEU
1029
A
SER
1030
n
30
SER
1030
A
GLU
1031
n
31
GLU
1031
A
LYS
1032
n
32
LYS
1032
A
PHE
1033
n
33
PHE
1033
A
LYS
1034
n
34
LYS
1034
A
GLU
1035
n
35
GLU
1035
A
VAL
1036
n
36
VAL
1036
A
GLU
1037
n
37
GLU
1037
A
PHE
1038
n
38
PHE
1038
A
VAL
1039
n
39
VAL
1039
A
PHE
1040
n
40
PHE
1040
A
LYS
1041
n
41
LYS
1041
A
SER
1042
n
42
SER
1042
A
SER
1043
n
43
SER
1043
A
PHE
1044
n
44
PHE
1044
A
ASP
1045
n
45
ASP
1045
A
LYS
1046
n
46
LYS
1046
A
ALA
1047
n
47
ALA
1047
A
ASN
1048
n
48
ASN
1048
A
ARG
1049
n
49
ARG
1049
A
SER
1050
n
50
SER
1050
A
SER
1051
n
51
SER
1051
A
ILE
1052
n
52
ILE
1052
A
HIS
1053
n
53
HIS
1053
A
SER
1054
n
54
SER
1054
A
PHE
1055
n
55
PHE
1055
A
ARG
1056
n
56
ARG
1056
A
GLY
1057
n
57
GLY
1057
A
HIS
1058
n
58
HIS
1058
A
GLY
1059
n
59
GLY
1059
A
LEU
1060
n
60
LEU
1060
A
GLU
1061
n
61
GLU
1061
A
TYR
1062
n
62
TYR
1062
A
GLY
1063
n
63
GLY
1063
A
VAL
1064
n
64
VAL
1064
A
LYS
1065
n
65
LYS
1065
A
ALA
1066
n
66
ALA
1066
A
LEU
1067
n
67
LEU
1067
A
ARG
1068
n
68
ARG
1068
A
LYS
1069
n
69
LYS
1069
A
VAL
1070
n
70
VAL
1070
A
LYS
1071
n
71
LYS
1071
A
GLU
1072
n
72
GLU
1072
A
GLU
1073
n
73
GLU
1073
A
PHE
1074
n
74
PHE
1074
A
GLY
1075
n
75
GLY
1075
A
LEU
1076
n
76
LEU
1076
A
LYS
1077
n
77
LYS
1077
A
ILE
1078
n
78
ILE
1078
A
THR
1079
n
79
THR
1079
A
THR
1080
n
80
THR
1080
A
ASP
1081
n
81
ASP
1081
A
ILE
1082
n
82
ILE
1082
A
HIS
1083
n
83
HIS
1083
A
GLU
1084
n
84
GLU
1084
A
SER
1085
n
85
SER
1085
A
TRP
1086
n
86
TRP
1086
A
GLN
1087
n
87
GLN
1087
A
ALA
1088
n
88
ALA
1088
A
GLU
1089
n
89
GLU
1089
A
PRO
1090
n
90
PRO
1090
A
VAL
1091
n
91
VAL
1091
A
ALA
1092
n
92
ALA
1092
A
GLU
1093
n
93
GLU
1093
A
VAL
1094
n
94
VAL
1094
A
ALA
1095
n
95
ALA
1095
A
ASP
1096
n
96
ASP
1096
A
ILE
1097
n
97
ILE
1097
A
ILE
1098
n
98
ILE
1098
A
GLN
1099
n
99
GLN
1099
A
ILE
1100
n
100
ILE
1100
A
PRO
1101
n
101
PRO
1101
A
ALA
1102
n
102
ALA
1102
A
PHE
1103
n
103
PHE
1103
A
LEU
1104
n
104
LEU
1104
A
CYS
1105
n
105
CYS
1105
A
ARG
1106
n
106
ARG
1106
A
GLN
1107
n
107
GLN
1107
A
THR
1108
n
108
THR
1108
A
ASP
1109
n
109
ASP
1109
A
LEU
1110
n
110
LEU
1110
A
LEU
1111
n
111
LEU
1111
A
LEU
1112
n
112
LEU
1112
A
ALA
1113
n
113
ALA
1113
A
ALA
1114
n
114
ALA
1114
A
ALA
1115
n
115
ALA
1115
A
LYS
1116
n
116
LYS
1116
A
THR
1117
n
117
THR
1117
A
GLY
1118
n
118
GLY
1118
A
ARG
1119
n
119
ARG
1119
A
ALA
1120
n
120
ALA
1120
A
VAL
1121
n
121
VAL
1121
A
ASN
1122
n
122
ASN
1122
A
VAL
1123
n
123
VAL
1123
A
LYS
1124
n
124
LYS
1124
A
LYS
1125
n
125
LYS
1125
A
GLY
1126
n
126
GLY
1126
A
GLN
1127
n
127
GLN
1127
A
PHE
1128
n
128
PHE
1128
A
LEU
1129
n
129
LEU
1129
A
ALA
1130
n
130
ALA
1130
A
PRO
1131
n
131
PRO
1131
A
TRP
1132
n
132
TRP
1132
A
ASP
1133
n
133
ASP
1133
A
THR
1134
n
134
THR
1134
A
LYS
1135
n
135
LYS
1135
A
ASN
1136
n
136
ASN
1136
A
VAL
1137
n
137
VAL
1137
A
VAL
1138
n
138
VAL
1138
A
GLU
1139
n
139
GLU
1139
A
LYS
1140
n
140
LYS
1140
A
LEU
1141
n
141
LEU
1141
A
LYS
1142
n
142
LYS
1142
A
PHE
1143
n
143
PHE
1143
A
GLY
1144
n
144
GLY
1144
A
GLY
1145
n
145
GLY
1145
A
ALA
1146
n
146
ALA
1146
A
LYS
1147
n
147
LYS
1147
A
GLU
1148
n
148
GLU
1148
A
ILE
1149
n
149
ILE
1149
A
TYR
1150
n
150
TYR
1150
A
LEU
1151
n
151
LEU
1151
A
THR
1152
n
152
THR
1152
A
GLU
1153
n
153
GLU
1153
A
ARG
1154
n
154
ARG
1154
A
GLY
1155
n
155
GLY
1155
A
THR
1156
n
156
THR
1156
A
THR
1157
n
157
THR
1157
A
PHE
1158
n
158
PHE
1158
A
GLY
1159
n
159
GLY
1159
A
TYR
1160
n
160
TYR
1160
A
ASN
1161
n
161
ASN
1161
A
ASN
1162
n
162
ASN
1162
A
LEU
1163
n
163
LEU
1163
A
VAL
1164
n
164
VAL
1164
A
VAL
1165
n
165
VAL
1165
A
ASP
1166
n
166
ASP
1166
A
PHE
1167
n
167
PHE
1167
A
ARG
1168
n
168
ARG
1168
A
SER
1169
n
169
SER
1169
A
LEU
1170
n
170
LEU
1170
A
PRO
1171
n
171
PRO
1171
A
ILE
1172
n
172
ILE
1172
A
MET
1173
n
173
MET
1173
A
LYS
1174
n
174
LYS
1174
A
GLN
1175
n
175
GLN
1175
A
TRP
1176
n
176
TRP
1176
A
ALA
1177
n
177
ALA
1177
A
LYS
1178
n
178
LYS
1178
A
VAL
1179
n
179
VAL
1179
A
ILE
1180
n
180
ILE
1180
A
TYR
1181
n
181
TYR
1181
A
ASP
1182
n
182
ASP
1182
A
ALA
1183
n
183
ALA
1183
A
THR
1184
n
184
THR
1184
A
HIS
1185
n
185
HIS
1185
A
SER
1186
n
186
SER
1186
A
VAL
1187
n
187
VAL
1187
A
GLN
1188
n
188
GLN
1188
A
LEU
1189
n
189
LEU
1189
A
PRO
1190
n
190
PRO
1190
A
GLY
1191
n
191
GLY
1191
A
GLY
1192
n
192
GLY
1192
A
LEU
1193
n
193
LEU
1193
A
GLY
1194
n
194
GLY
1194
A
ASP
1195
n
195
ASP
1195
A
LYS
1196
n
196
LYS
1196
A
SER
1197
n
197
SER
1197
A
GLY
1198
n
198
GLY
1198
A
GLY
1199
n
199
GLY
1199
A
MET
1200
n
200
MET
1200
A
ARG
1201
n
201
ARG
1201
A
GLU
1202
n
202
GLU
1202
A
PHE
1203
n
203
PHE
1203
A
ILE
1204
n
204
ILE
1204
A
PHE
1205
n
205
PHE
1205
A
PRO
1206
n
206
PRO
1206
A
LEU
1207
n
207
LEU
1207
A
ILE
1208
n
208
ILE
1208
A
ARG
1209
n
209
ARG
1209
A
ALA
1210
n
210
ALA
1210
A
ALA
1211
n
211
ALA
1211
A
VAL
1212
n
212
VAL
1212
A
ALA
1213
n
213
ALA
1213
A
VAL
1214
n
214
VAL
1214
A
GLY
1215
n
215
GLY
1215
A
CYS
1216
n
216
CYS
1216
A
ASP
1217
n
217
ASP
1217
A
GLY
1218
n
218
GLY
1218
A
VAL
1219
n
219
VAL
1219
A
PHE
1220
n
220
PHE
1220
A
MET
1221
n
221
MET
1221
A
GLU
1222
n
222
GLU
1222
A
THR
1223
n
223
THR
1223
A
HIS
1224
n
224
HIS
1224
A
PRO
1225
n
225
PRO
1225
A
GLU
1226
n
226
GLU
1226
A
PRO
1227
n
227
PRO
1227
A
GLU
1228
n
228
GLU
1228
A
LYS
1229
n
229
LYS
1229
A
ALA
1230
n
230
ALA
1230
A
LEU
1231
n
231
LEU
1231
A
SER
1232
n
232
SER
1232
A
ASP
1233
n
233
ASP
1233
A
ALA
1234
n
234
ALA
1234
A
SER
1235
n
235
SER
1235
A
THR
1236
n
236
THR
1236
A
GLN
1237
n
237
GLN
1237
A
LEU
1238
n
238
LEU
1238
A
PRO
1239
n
239
PRO
1239
A
LEU
1240
n
240
LEU
1240
A
SER
1241
n
241
SER
1241
A
GLN
1242
n
242
GLN
1242
A
LEU
1243
n
243
LEU
1243
A
GLU
1244
n
244
GLU
1244
A
GLY
1245
n
245
GLY
1245
A
ILE
1246
n
246
ILE
1246
A
ILE
1247
n
247
ILE
1247
A
GLU
1248
n
248
GLU
1248
A
ALA
1249
n
249
ALA
1249
A
ILE
1250
n
250
ILE
1250
A
LEU
1251
n
251
LEU
1251
A
GLU
1252
n
252
GLU
1252
A
ILE
1253
n
253
ILE
1253
A
ARG
1254
n
254
ARG
1254
A
GLU
1255
n
255
GLU
1255
A
VAL
1256
n
256
VAL
1256
A
ALA
1257
n
257
ALA
1257
A
SER
1258
n
258
SER
1258
A
LYS
1259
n
259
LYS
1259
A
TYR
1260
n
260
TYR
1260
A
TYR
1261
n
261
TYR
1261
A
GLU
1262
n
262
GLU
1262
A
THR
1263
n
263
THR
1263
A
ILE
1264
n
264
ILE
1264
A
n
265
1265
A
n
266
1266
A
n
267
1267
A
n
1
2001
B
n
2
2002
B
LYS
2003
n
3
LYS
2003
B
PHE
2004
n
4
PHE
2004
B
LEU
2005
n
5
LEU
2005
B
VAL
2006
n
6
VAL
2006
B
ILE
2007
n
7
ILE
2007
B
ALA
2008
n
8
ALA
2008
B
GLY
2009
n
9
GLY
2009
B
PRO
2010
n
10
PRO
2010
B
CYS
2011
n
11
CYS
2011
B
ALA
2012
n
12
ALA
2012
B
ILE
2013
n
13
ILE
2013
B
GLU
2014
n
14
GLU
2014
B
SER
2015
n
15
SER
2015
B
GLU
2016
n
16
GLU
2016
B
GLU
2017
n
17
GLU
2017
B
LEU
2018
n
18
LEU
2018
B
LEU
2019
n
19
LEU
2019
B
LEU
2020
n
20
LEU
2020
B
LYS
2021
n
21
LYS
2021
B
VAL
2022
n
22
VAL
2022
B
GLY
2023
n
23
GLY
2023
B
GLU
2024
n
24
GLU
2024
B
GLU
2025
n
25
GLU
2025
B
ILE
2026
n
26
ILE
2026
B
LYS
2027
n
27
LYS
2027
B
ARG
2028
n
28
ARG
2028
B
LEU
2029
n
29
LEU
2029
B
SER
2030
n
30
SER
2030
B
GLU
2031
n
31
GLU
2031
B
LYS
2032
n
32
LYS
2032
B
PHE
2033
n
33
PHE
2033
B
LYS
2034
n
34
LYS
2034
B
GLU
2035
n
35
GLU
2035
B
VAL
2036
n
36
VAL
2036
B
GLU
2037
n
37
GLU
2037
B
PHE
2038
n
38
PHE
2038
B
VAL
2039
n
39
VAL
2039
B
PHE
2040
n
40
PHE
2040
B
LYS
2041
n
41
LYS
2041
B
SER
2042
n
42
SER
2042
B
SER
2043
n
43
SER
2043
B
PHE
2044
n
44
PHE
2044
B
ASP
2045
n
45
ASP
2045
B
LYS
2046
n
46
LYS
2046
B
ALA
2047
n
47
ALA
2047
B
ASN
2048
n
48
ASN
2048
B
ARG
2049
n
49
ARG
2049
B
SER
2050
n
50
SER
2050
B
SER
2051
n
51
SER
2051
B
ILE
2052
n
52
ILE
2052
B
HIS
2053
n
53
HIS
2053
B
SER
2054
n
54
SER
2054
B
PHE
2055
n
55
PHE
2055
B
ARG
2056
n
56
ARG
2056
B
GLY
2057
n
57
GLY
2057
B
HIS
2058
n
58
HIS
2058
B
GLY
2059
n
59
GLY
2059
B
LEU
2060
n
60
LEU
2060
B
GLU
2061
n
61
GLU
2061
B
TYR
2062
n
62
TYR
2062
B
GLY
2063
n
63
GLY
2063
B
VAL
2064
n
64
VAL
2064
B
LYS
2065
n
65
LYS
2065
B
ALA
2066
n
66
ALA
2066
B
LEU
2067
n
67
LEU
2067
B
ARG
2068
n
68
ARG
2068
B
LYS
2069
n
69
LYS
2069
B
VAL
2070
n
70
VAL
2070
B
LYS
2071
n
71
LYS
2071
B
GLU
2072
n
72
GLU
2072
B
GLU
2073
n
73
GLU
2073
B
PHE
2074
n
74
PHE
2074
B
GLY
2075
n
75
GLY
2075
B
LEU
2076
n
76
LEU
2076
B
LYS
2077
n
77
LYS
2077
B
ILE
2078
n
78
ILE
2078
B
THR
2079
n
79
THR
2079
B
THR
2080
n
80
THR
2080
B
ASP
2081
n
81
ASP
2081
B
ILE
2082
n
82
ILE
2082
B
HIS
2083
n
83
HIS
2083
B
GLU
2084
n
84
GLU
2084
B
SER
2085
n
85
SER
2085
B
TRP
2086
n
86
TRP
2086
B
GLN
2087
n
87
GLN
2087
B
ALA
2088
n
88
ALA
2088
B
GLU
2089
n
89
GLU
2089
B
PRO
2090
n
90
PRO
2090
B
VAL
2091
n
91
VAL
2091
B
ALA
2092
n
92
ALA
2092
B
GLU
2093
n
93
GLU
2093
B
VAL
2094
n
94
VAL
2094
B
ALA
2095
n
95
ALA
2095
B
ASP
2096
n
96
ASP
2096
B
ILE
2097
n
97
ILE
2097
B
ILE
2098
n
98
ILE
2098
B
GLN
2099
n
99
GLN
2099
B
ILE
2100
n
100
ILE
2100
B
PRO
2101
n
101
PRO
2101
B
ALA
2102
n
102
ALA
2102
B
PHE
2103
n
103
PHE
2103
B
LEU
2104
n
104
LEU
2104
B
CYS
2105
n
105
CYS
2105
B
ARG
2106
n
106
ARG
2106
B
GLN
2107
n
107
GLN
2107
B
THR
2108
n
108
THR
2108
B
ASP
2109
n
109
ASP
2109
B
LEU
2110
n
110
LEU
2110
B
LEU
2111
n
111
LEU
2111
B
LEU
2112
n
112
LEU
2112
B
ALA
2113
n
113
ALA
2113
B
ALA
2114
n
114
ALA
2114
B
ALA
2115
n
115
ALA
2115
B
LYS
2116
n
116
LYS
2116
B
THR
2117
n
117
THR
2117
B
GLY
2118
n
118
GLY
2118
B
ARG
2119
n
119
ARG
2119
B
ALA
2120
n
120
ALA
2120
B
VAL
2121
n
121
VAL
2121
B
ASN
2122
n
122
ASN
2122
B
VAL
2123
n
123
VAL
2123
B
LYS
2124
n
124
LYS
2124
B
LYS
2125
n
125
LYS
2125
B
GLY
2126
n
126
GLY
2126
B
GLN
2127
n
127
GLN
2127
B
PHE
2128
n
128
PHE
2128
B
LEU
2129
n
129
LEU
2129
B
ALA
2130
n
130
ALA
2130
B
PRO
2131
n
131
PRO
2131
B
TRP
2132
n
132
TRP
2132
B
ASP
2133
n
133
ASP
2133
B
THR
2134
n
134
THR
2134
B
LYS
2135
n
135
LYS
2135
B
ASN
2136
n
136
ASN
2136
B
VAL
2137
n
137
VAL
2137
B
VAL
2138
n
138
VAL
2138
B
GLU
2139
n
139
GLU
2139
B
LYS
2140
n
140
LYS
2140
B
LEU
2141
n
141
LEU
2141
B
LYS
2142
n
142
LYS
2142
B
PHE
2143
n
143
PHE
2143
B
GLY
2144
n
144
GLY
2144
B
GLY
2145
n
145
GLY
2145
B
ALA
2146
n
146
ALA
2146
B
LYS
2147
n
147
LYS
2147
B
GLU
2148
n
148
GLU
2148
B
ILE
2149
n
149
ILE
2149
B
TYR
2150
n
150
TYR
2150
B
LEU
2151
n
151
LEU
2151
B
THR
2152
n
152
THR
2152
B
GLU
2153
n
153
GLU
2153
B
ARG
2154
n
154
ARG
2154
B
GLY
2155
n
155
GLY
2155
B
THR
2156
n
156
THR
2156
B
THR
2157
n
157
THR
2157
B
PHE
2158
n
158
PHE
2158
B
GLY
2159
n
159
GLY
2159
B
TYR
2160
n
160
TYR
2160
B
ASN
2161
n
161
ASN
2161
B
ASN
2162
n
162
ASN
2162
B
LEU
2163
n
163
LEU
2163
B
VAL
2164
n
164
VAL
2164
B
VAL
2165
n
165
VAL
2165
B
ASP
2166
n
166
ASP
2166
B
PHE
2167
n
167
PHE
2167
B
ARG
2168
n
168
ARG
2168
B
SER
2169
n
169
SER
2169
B
LEU
2170
n
170
LEU
2170
B
PRO
2171
n
171
PRO
2171
B
ILE
2172
n
172
ILE
2172
B
MET
2173
n
173
MET
2173
B
LYS
2174
n
174
LYS
2174
B
GLN
2175
n
175
GLN
2175
B
TRP
2176
n
176
TRP
2176
B
ALA
2177
n
177
ALA
2177
B
LYS
2178
n
178
LYS
2178
B
VAL
2179
n
179
VAL
2179
B
ILE
2180
n
180
ILE
2180
B
TYR
2181
n
181
TYR
2181
B
ASP
2182
n
182
ASP
2182
B
ALA
2183
n
183
ALA
2183
B
THR
2184
n
184
THR
2184
B
HIS
2185
n
185
HIS
2185
B
SER
2186
n
186
SER
2186
B
VAL
2187
n
187
VAL
2187
B
GLN
2188
n
188
GLN
2188
B
LEU
2189
n
189
LEU
2189
B
PRO
2190
n
190
PRO
2190
B
GLY
2191
n
191
GLY
2191
B
GLY
2192
n
192
GLY
2192
B
LEU
2193
n
193
LEU
2193
B
GLY
2194
n
194
GLY
2194
B
ASP
2195
n
195
ASP
2195
B
LYS
2196
n
196
LYS
2196
B
SER
2197
n
197
SER
2197
B
GLY
2198
n
198
GLY
2198
B
GLY
2199
n
199
GLY
2199
B
MET
2200
n
200
MET
2200
B
ARG
2201
n
201
ARG
2201
B
GLU
2202
n
202
GLU
2202
B
PHE
2203
n
203
PHE
2203
B
ILE
2204
n
204
ILE
2204
B
PHE
2205
n
205
PHE
2205
B
PRO
2206
n
206
PRO
2206
B
LEU
2207
n
207
LEU
2207
B
ILE
2208
n
208
ILE
2208
B
ARG
2209
n
209
ARG
2209
B
ALA
2210
n
210
ALA
2210
B
ALA
2211
n
211
ALA
2211
B
VAL
2212
n
212
VAL
2212
B
ALA
2213
n
213
ALA
2213
B
VAL
2214
n
214
VAL
2214
B
GLY
2215
n
215
GLY
2215
B
CYS
2216
n
216
CYS
2216
B
ASP
2217
n
217
ASP
2217
B
GLY
2218
n
218
GLY
2218
B
VAL
2219
n
219
VAL
2219
B
PHE
2220
n
220
PHE
2220
B
MET
2221
n
221
MET
2221
B
GLU
2222
n
222
GLU
2222
B
THR
2223
n
223
THR
2223
B
HIS
2224
n
224
HIS
2224
B
PRO
2225
n
225
PRO
2225
B
GLU
2226
n
226
GLU
2226
B
PRO
2227
n
227
PRO
2227
B
GLU
2228
n
228
GLU
2228
B
LYS
2229
n
229
LYS
2229
B
ALA
2230
n
230
ALA
2230
B
LEU
2231
n
231
LEU
2231
B
SER
2232
n
232
SER
2232
B
ASP
2233
n
233
ASP
2233
B
ALA
2234
n
234
ALA
2234
B
SER
2235
n
235
SER
2235
B
THR
2236
n
236
THR
2236
B
GLN
2237
n
237
GLN
2237
B
LEU
2238
n
238
LEU
2238
B
PRO
2239
n
239
PRO
2239
B
LEU
2240
n
240
LEU
2240
B
SER
2241
n
241
SER
2241
B
GLN
2242
n
242
GLN
2242
B
LEU
2243
n
243
LEU
2243
B
GLU
2244
n
244
GLU
2244
B
GLY
2245
n
245
GLY
2245
B
ILE
2246
n
246
ILE
2246
B
ILE
2247
n
247
ILE
2247
B
GLU
2248
n
248
GLU
2248
B
ALA
2249
n
249
ALA
2249
B
ILE
2250
n
250
ILE
2250
B
LEU
2251
n
251
LEU
2251
B
GLU
2252
n
252
GLU
2252
B
ILE
2253
n
253
ILE
2253
B
ARG
2254
n
254
ARG
2254
B
GLU
2255
n
255
GLU
2255
B
VAL
2256
n
256
VAL
2256
B
ALA
2257
n
257
ALA
2257
B
SER
2258
n
258
SER
2258
B
LYS
2259
n
259
LYS
2259
B
TYR
2260
n
260
TYR
2260
B
TYR
2261
n
261
TYR
2261
B
GLU
2262
n
262
GLU
2262
B
THR
2263
n
263
THR
2263
B
ILE
2264
n
264
ILE
2264
B
n
265
2265
B
n
266
2266
B
n
267
2267
B
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
16980
-67
33430
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
1156
A
N
THR
156
A
O
VAL
1164
A
O
VAL
164
A
O
LEU
1189
A
O
LEU
189
A
N
GLY
1198
A
N
GLY
198
B
N
THR
2156
B
N
THR
156
B
O
VAL
2164
B
O
VAL
164
B
O
LEU
2189
B
O
LEU
189
B
N
GLY
2198
B
N
GLY
198
1
A
MET
1001
A
MET
1
1
Y
1
A
PRO
1265
A
PRO
265
1
Y
1
A
VAL
1266
A
VAL
266
1
Y
1
A
LYS
1267
A
LYS
267
1
Y
1
B
MET
2001
B
MET
1
1
Y
1
B
GLU
2002
B
GLU
2
1
Y
1
B
PRO
2265
B
PRO
265
1
Y
1
B
VAL
2266
B
VAL
266
1
Y
1
B
LYS
2267
B
LYS
267
1
Y
1
A
A
CD
OE2
GLU
GLU
1072
1072
0.077
0.011
1.252
1.329
N
1
B
SER
2015
179.75
148.89
1
B
SER
2042
-171.51
134.72
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
PEP_A5P_MOD4.PARAM
PEP_A5P.TOP
33.8
3.18
2.06
0.00
3.18
0.00
-6.36
0.2330000
0.003
0.2130000
1.80
26.13
5777
56785
56785
10.2
91.8
RANDOM
744410.91
0.00
1
RESTRAINED
THROUGHOUT
0
0
Engh & Huber
FLAT MODEL
50.38
0.386
0.26
0.23
5.00
0.19
0.17
1.80
26.13
204
4373
48
0
4121
0.005
1.5
23.2
0.90
1.19
1.50
1.77
2.00
2.01
2.00
2.98
2.50
0.4120000
0.015
0.3900000
1.91
742
6819
6
9.8
74.4
32.5
1.8
26.13
1FXQ
56785
56785
0
0
0.1100000
1
22.3
6.97
91.8
0.4470000
1.80
1.91
7561
1
2.64
74.4
refinement
CNS
data scaling
SCALEPACK
phasing
CNS
AQUIFEX AEOLICUS KDO8P SYNTHASE IN COMPLEX WITH PEP AND A5P
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
4
N
N
The biological assembly is a tetramer constructed from chain A and chain B and their symmetry partners generated by application of the symmetry operation (x=y, y=x, z=-z)
A
SER
1015
A
SER
15
HELX_P
A
PHE
1033
A
PHE
33
1
1
19
A
GLY
1059
A
GLY
59
HELX_P
A
GLY
1075
A
GLY
75
1
2
17
A
GLU
1084
A
GLU
84
HELX_P
A
TRP
1086
A
TRP
86
5
3
3
A
GLN
1087
A
GLN
87
HELX_P
A
GLU
1093
A
GLU
93
1
4
7
A
PRO
1101
A
PRO
101
HELX_P
A
CYS
1105
A
CYS
105
5
5
5
A
GLN
1107
A
GLN
107
HELX_P
A
LYS
1116
A
LYS
116
1
6
10
A
ALA
1130
A
ALA
130
HELX_P
A
ASP
1133
A
ASP
133
5
7
4
A
THR
1134
A
THR
134
HELX_P
A
GLY
1144
A
GLY
144
1
8
11
A
ARG
1168
A
ARG
168
HELX_P
A
LYS
1174
A
LYS
174
1
9
7
A
THR
1184
A
THR
184
HELX_P
A
SER
1186
A
SER
186
5
10
3
A
PHE
1203
A
PHE
203
HELX_P
A
GLY
1215
A
GLY
215
1
11
13
A
GLU
1226
A
GLU
226
HELX_P
A
ALA
1230
A
ALA
230
5
12
5
A
GLN
1242
A
GLN
242
HELX_P
A
LYS
1259
A
LYS
259
1
13
18
B
SER
2015
B
SER
15
HELX_P
B
PHE
2033
B
PHE
33
1
14
19
B
GLY
2059
B
GLY
59
HELX_P
B
GLY
2075
B
GLY
75
1
15
17
B
GLU
2084
B
GLU
84
HELX_P
B
TRP
2086
B
TRP
86
5
16
3
B
GLN
2087
B
GLN
87
HELX_P
B
GLU
2093
B
GLU
93
1
17
7
B
PRO
2101
B
PRO
101
HELX_P
B
CYS
2105
B
CYS
105
5
18
5
B
GLN
2107
B
GLN
107
HELX_P
B
THR
2117
B
THR
117
1
19
11
B
ALA
2130
B
ALA
130
HELX_P
B
TRP
2132
B
TRP
132
5
20
3
B
ASP
2133
B
ASP
133
HELX_P
B
GLY
2144
B
GLY
144
1
21
12
B
ARG
2168
B
ARG
168
HELX_P
B
LYS
2174
B
LYS
174
1
22
7
B
THR
2184
B
THR
184
HELX_P
B
SER
2186
B
SER
186
5
23
3
B
PHE
2203
B
PHE
203
HELX_P
B
GLY
2215
B
GLY
215
1
24
13
B
GLU
2226
B
GLU
226
HELX_P
B
ALA
2230
B
ALA
230
5
25
5
B
GLN
2242
B
GLN
242
HELX_P
B
SER
2258
B
SER
258
1
26
17
B
LYS
2259
B
LYS
259
HELX_P
B
TYR
2261
B
TYR
261
5
27
3
LYASE
kdo8ps, kdo8p, kdo, PEP, A5P, beta/alpha barrel, LYASE
KDSA_AQUAE
UNP
1
1
O66496
MEKFLVIAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITT
DIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTTFGY
NNLVVDFRSLPIMKQWAKVIYDATHSVQLPGGLGDKSGGMREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPL
SQLEGIIEAILEIREVASKYYETIPVK
1
267
1FXQ
1001
1267
O66496
A
1
1
267
1
267
1FXQ
2001
2267
O66496
B
1
1
267
2
2
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
1156
A
THR
156
A
THR
1157
A
THR
157
A
LEU
1163
A
LEU
163
A
VAL
1164
A
VAL
164
A
GLN
1188
A
GLN
188
A
LEU
1189
A
LEU
189
A
GLY
1198
A
GLY
198
A
GLY
1199
A
GLY
199
B
THR
2156
B
THR
156
B
THR
2157
B
THR
157
B
LEU
2163
B
LEU
163
B
VAL
2164
B
VAL
164
B
GLN
2188
B
GLN
188
B
LEU
2189
B
LEU
189
B
GLY
2198
B
GLY
198
B
GLY
2199
B
GLY
199
BINDING SITE FOR RESIDUE PEP A 1268
A
PEP
1268
Software
14
BINDING SITE FOR RESIDUE PEP B 2268
B
PEP
2268
Software
15
BINDING SITE FOR RESIDUE A5P A 1269
A
A5P
1269
Software
16
BINDING SITE FOR RESIDUE A5P B 2269
B
A5P
2269
Software
15
A
LYS
1041
A
LYS
41
14
1_555
A
SER
1043
A
SER
43
14
1_555
A
LYS
1046
A
LYS
46
14
1_555
A
ASP
1081
A
ASP
81
14
1_555
A
GLN
1099
A
GLN
99
14
1_555
A
PRO
1101
A
PRO
101
14
1_555
A
ALA
1102
A
ALA
102
14
1_555
A
LYS
1124
A
LYS
124
14
1_555
A
ARG
1154
A
ARG
154
14
1_555
A
HIS
1185
A
HIS
185
14
1_555
A
PHE
1220
A
PHE
220
14
1_555
A
A5P
1269
D
A5P
14
1_555
A
HOH
3014
G
HOH
14
1_555
A
HOH
3025
G
HOH
14
1_555
B
LYS
2041
B
LYS
41
15
1_555
B
SER
2043
B
SER
43
15
1_555
B
LYS
2046
B
LYS
46
15
1_555
B
ASP
2081
B
ASP
81
15
1_555
B
GLN
2099
B
GLN
99
15
1_555
B
PRO
2101
B
PRO
101
15
1_555
B
ALA
2102
B
ALA
102
15
1_555
B
LYS
2124
B
LYS
124
15
1_555
B
ARG
2154
B
ARG
154
15
1_555
B
HIS
2185
B
HIS
185
15
1_555
B
PHE
2220
B
PHE
220
15
1_555
B
A5P
2269
F
A5P
15
1_555
B
HOH
3018
H
HOH
15
1_555
B
HOH
3040
H
HOH
15
1_555
B
HOH
3074
H
HOH
15
1_555
A
LYS
1046
A
LYS
46
16
1_555
A
ASN
1048
A
ASN
48
16
1_555
A
ARG
1049
A
ARG
49
16
1_555
A
SER
1050
A
SER
50
16
1_555
A
HIS
1185
A
HIS
185
16
1_555
A
GLN
1188
A
GLN
188
16
1_555
A
LYS
1196
A
LYS
196
16
1_555
A
SER
1197
A
SER
197
16
1_555
A
ASP
1233
A
ASP
233
16
1_555
A
PEP
1268
C
PEP
16
1_555
A
HOH
3014
G
HOH
16
1_555
A
HOH
3015
G
HOH
16
1_555
A
HOH
3099
G
HOH
16
1_555
A
HOH
3192
G
HOH
16
1_555
A
HOH
3211
G
HOH
16
1_555
B
ARG
2106
B
ARG
106
16
1_555
A
ARG
1106
A
ARG
106
15
1_555
B
LYS
2046
B
LYS
46
15
1_555
B
ASN
2048
B
ASN
48
15
1_555
B
ARG
2049
B
ARG
49
15
1_555
B
SER
2050
B
SER
50
15
1_555
B
HIS
2185
B
HIS
185
15
1_555
B
GLN
2188
B
GLN
188
15
1_555
B
LYS
2196
B
LYS
196
15
1_555
B
SER
2197
B
SER
197
15
1_555
B
ASP
2233
B
ASP
233
15
1_555
B
PEP
2268
E
PEP
15
1_555
B
HOH
3018
H
HOH
15
1_555
B
HOH
3050
H
HOH
15
1_555
B
HOH
3153
H
HOH
15
1_555
B
HOH
3196
H
HOH
15
1_555
152
P 31 2 1