0.010871 0.000000 0.003130 0.000000 0.023425 0.000000 0.000000 0.000000 0.016651 0.00000 0.00000 0.00000 Hakansson, K. Wang, A.H.-J. Miller, C.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 106.06 90.00 91.986 42.690 62.496 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CD N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 97 14097 14102 10.1073/pnas.260376797 11106384 The structure of aspartyl dipeptidase reveals a unique fold with a Ser-His-Glu catalytic triad. 2000 US J.Bacteriol. JOBAAY 0767 0021-9193 182 2536 2543 10.1128/JB.182.9.2536-2543.2000 Peptidase E, a peptidase specific for N-terminal aspartic dipeptides, is a serine hydrolase 2000 US J.Bacteriol. JOBAAY 0767 0021-9193 176 166 172 Cloning and nucleotide sequence of the cyclic AMP receptor protein-regulated Salmonella typhimurium pepE gene and crystallization of its product, an alpha-aspartyl dipeptidase 1994 10.2210/pdb1fy2/pdb pdb_00001fy2 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1998-06-06 BRANDEIS SINGLE WAVELENGTH M x-ray 1 1.000 1.0 X12C NSLS 1.000 SYNCHROTRON NSLS BEAMLINE X12C 24793.301 ASPARTYL DIPEPTIDASE 3.4.-.- 1 man polymer 112.411 CADMIUM ION 1 syn non-polymer 18.015 water 192 nat water no no MELLLLSNSTLPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKA EIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPHFTN ALPEGHKGETREQRIRELLVVAPELTVIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGEEAVALEAGHRF MELLLLSNSTLPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKA EIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPHFTN ALPEGHKGETREQRIRELLVVAPELTVIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGEEAVALEAGHRF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Salmonella Escherichia sample 602 Salmonella typhimurium 562 Escherichia coli PLASMID PSE380 1 2.38 48.24 VAPOR DIFFUSION, HANGING DROP 9.0 5mg/ml enzyme, 50mM Tris, 50mM cacodylate, 1mM CdSO4, 2-10% PEG 35000, equilibrated against a NaCl solution, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Atomic model Data collection Database references Derived calculations 1 0 2001-01-10 1 1 2007-10-21 1 2 2011-07-13 1 3 2011-11-16 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-09-28 REL REL CD CADMIUM ION HOH water CD2 1 2 CD CD 1001 A HOH 1 3 HOH HOH 1002 A HOH 2 3 HOH HOH 1003 A HOH 3 3 HOH HOH 1004 A HOH 4 3 HOH HOH 1005 A HOH 5 3 HOH HOH 1006 A HOH 6 3 HOH HOH 1007 A HOH 7 3 HOH HOH 1008 A HOH 8 3 HOH HOH 1009 A HOH 9 3 HOH HOH 1010 A HOH 10 3 HOH HOH 1011 A HOH 11 3 HOH HOH 1012 A HOH 12 3 HOH HOH 1013 A HOH 13 3 HOH HOH 1014 A HOH 14 3 HOH HOH 1015 A HOH 15 3 HOH HOH 1016 A HOH 16 3 HOH HOH 1017 A HOH 17 3 HOH HOH 1018 A HOH 18 3 HOH HOH 1019 A HOH 19 3 HOH HOH 1020 A HOH 20 3 HOH HOH 1021 A HOH 21 3 HOH HOH 1022 A HOH 22 3 HOH HOH 1023 A HOH 23 3 HOH HOH 1024 A HOH 24 3 HOH HOH 1025 A HOH 25 3 HOH HOH 1026 A HOH 26 3 HOH HOH 1027 A HOH 27 3 HOH HOH 1028 A HOH 28 3 HOH HOH 1029 A HOH 29 3 HOH HOH 1030 A HOH 30 3 HOH HOH 1031 A HOH 31 3 HOH HOH 1032 A HOH 32 3 HOH HOH 1033 A HOH 33 3 HOH HOH 1034 A HOH 34 3 HOH HOH 1035 A HOH 35 3 HOH HOH 1036 A HOH 36 3 HOH HOH 1037 A HOH 37 3 HOH HOH 1038 A HOH 38 3 HOH HOH 1039 A HOH 39 3 HOH HOH 1040 A HOH 40 3 HOH HOH 1041 A HOH 41 3 HOH HOH 1042 A HOH 42 3 HOH HOH 1043 A HOH 43 3 HOH HOH 1044 A HOH 44 3 HOH HOH 1045 A HOH 45 3 HOH HOH 1046 A HOH 46 3 HOH HOH 1047 A HOH 47 3 HOH HOH 1048 A HOH 48 3 HOH HOH 1049 A HOH 49 3 HOH HOH 1050 A HOH 50 3 HOH HOH 1051 A HOH 51 3 HOH HOH 1052 A HOH 52 3 HOH HOH 1053 A HOH 53 3 HOH HOH 1054 A HOH 54 3 HOH HOH 1055 A HOH 55 3 HOH HOH 1056 A HOH 56 3 HOH HOH 1057 A HOH 57 3 HOH HOH 1058 A HOH 58 3 HOH HOH 1059 A HOH 59 3 HOH HOH 1060 A HOH 60 3 HOH HOH 1061 A HOH 61 3 HOH HOH 1062 A HOH 62 3 HOH HOH 1063 A HOH 63 3 HOH HOH 1064 A HOH 64 3 HOH HOH 1065 A HOH 65 3 HOH HOH 1066 A HOH 66 3 HOH HOH 1067 A HOH 67 3 HOH HOH 1068 A HOH 68 3 HOH HOH 1069 A HOH 69 3 HOH HOH 1070 A HOH 70 3 HOH HOH 1071 A HOH 71 3 HOH HOH 1072 A HOH 72 3 HOH HOH 1073 A HOH 73 3 HOH HOH 1074 A HOH 74 3 HOH HOH 1075 A HOH 75 3 HOH HOH 1076 A HOH 76 3 HOH HOH 1077 A HOH 77 3 HOH HOH 1078 A HOH 78 3 HOH HOH 1079 A HOH 79 3 HOH HOH 1080 A HOH 80 3 HOH HOH 1081 A HOH 81 3 HOH HOH 1082 A HOH 82 3 HOH HOH 1083 A HOH 83 3 HOH HOH 1084 A HOH 84 3 HOH HOH 1085 A HOH 85 3 HOH HOH 1086 A HOH 86 3 HOH HOH 1087 A HOH 87 3 HOH HOH 1088 A HOH 88 3 HOH HOH 1089 A HOH 89 3 HOH HOH 1090 A HOH 90 3 HOH HOH 1091 A HOH 91 3 HOH HOH 1092 A HOH 92 3 HOH HOH 1093 A HOH 93 3 HOH HOH 1094 A HOH 94 3 HOH HOH 1095 A HOH 95 3 HOH HOH 1096 A HOH 96 3 HOH HOH 1097 A HOH 97 3 HOH HOH 1098 A HOH 98 3 HOH HOH 1099 A HOH 99 3 HOH HOH 1100 A HOH 100 3 HOH HOH 1101 A HOH 101 3 HOH HOH 1102 A HOH 102 3 HOH HOH 1103 A HOH 103 3 HOH HOH 1104 A HOH 104 3 HOH HOH 1105 A HOH 105 3 HOH HOH 1106 A HOH 106 3 HOH HOH 1107 A HOH 107 3 HOH HOH 1108 A HOH 108 3 HOH HOH 1109 A HOH 109 3 HOH HOH 1110 A HOH 110 3 HOH HOH 1111 A HOH 111 3 HOH HOH 1112 A HOH 112 3 HOH HOH 1113 A HOH 113 3 HOH HOH 1114 A HOH 115 3 HOH HOH 1115 A HOH 116 3 HOH HOH 1116 A HOH 117 3 HOH HOH 1117 A HOH 118 3 HOH HOH 1118 A HOH 119 3 HOH HOH 1119 A HOH 120 3 HOH HOH 1120 A HOH 121 3 HOH HOH 1121 A HOH 122 3 HOH HOH 1122 A HOH 123 3 HOH HOH 1123 A HOH 124 3 HOH HOH 1124 A HOH 125 3 HOH HOH 1125 A HOH 126 3 HOH HOH 1126 A HOH 127 3 HOH HOH 1127 A HOH 128 3 HOH HOH 1128 A HOH 129 3 HOH HOH 1129 A HOH 130 3 HOH HOH 1130 A HOH 131 3 HOH HOH 1131 A HOH 132 3 HOH HOH 1132 A HOH 133 3 HOH HOH 1133 A HOH 134 3 HOH HOH 1134 A HOH 135 3 HOH HOH 1135 A HOH 136 3 HOH HOH 1136 A HOH 137 3 HOH HOH 1137 A HOH 138 3 HOH HOH 1138 A HOH 139 3 HOH HOH 1139 A HOH 140 3 HOH HOH 1140 A HOH 141 3 HOH HOH 1141 A HOH 142 3 HOH HOH 1142 A HOH 143 3 HOH HOH 1143 A HOH 144 3 HOH HOH 1144 A HOH 145 3 HOH HOH 1145 A HOH 146 3 HOH HOH 1146 A HOH 147 3 HOH HOH 1147 A HOH 148 3 HOH HOH 1148 A HOH 149 3 HOH HOH 1149 A HOH 150 3 HOH HOH 1150 A HOH 151 3 HOH HOH 1151 A HOH 152 3 HOH HOH 1152 A HOH 153 3 HOH HOH 1153 A HOH 154 3 HOH HOH 1154 A HOH 155 3 HOH HOH 1155 A HOH 156 3 HOH HOH 1156 A HOH 157 3 HOH HOH 1157 A HOH 158 3 HOH HOH 1158 A HOH 159 3 HOH HOH 1159 A HOH 160 3 HOH HOH 1160 A HOH 161 3 HOH HOH 1161 A HOH 162 3 HOH HOH 1162 A HOH 163 3 HOH HOH 1163 A HOH 164 3 HOH HOH 1164 A HOH 165 3 HOH HOH 1165 A HOH 166 3 HOH HOH 1166 A HOH 167 3 HOH HOH 1167 A HOH 168 3 HOH HOH 1168 A HOH 169 3 HOH HOH 1169 A HOH 170 3 HOH HOH 1170 A HOH 171 3 HOH HOH 1171 A HOH 172 3 HOH HOH 1172 A HOH 173 3 HOH HOH 1173 A HOH 174 3 HOH HOH 1174 A HOH 175 3 HOH HOH 1175 A HOH 176 3 HOH HOH 1176 A HOH 177 3 HOH HOH 1177 A HOH 178 3 HOH HOH 1178 A HOH 179 3 HOH HOH 1179 A HOH 180 3 HOH HOH 1180 A HOH 181 3 HOH HOH 1181 A HOH 182 3 HOH HOH 1182 A HOH 183 3 HOH HOH 1183 A HOH 184 3 HOH HOH 1184 A HOH 185 3 HOH HOH 1185 A HOH 186 3 HOH HOH 1186 A HOH 187 3 HOH HOH 1187 A HOH 188 3 HOH HOH 1188 A HOH 189 3 HOH HOH 1189 A HOH 190 3 HOH HOH 1190 A HOH 191 3 HOH HOH 1191 A HOH 192 3 HOH HOH 1192 A HOH 193 3 HOH HOH 1193 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A LEU 3 n 3 LEU 3 A LEU 4 n 4 LEU 4 A LEU 5 n 5 LEU 5 A LEU 6 n 6 LEU 6 A SER 7 n 7 SER 7 A ASN 8 n 8 ASN 8 A SER 9 n 9 SER 9 A THR 10 n 10 THR 10 A LEU 11 n 11 LEU 11 A PRO 12 n 12 PRO 12 A GLY 13 n 13 GLY 13 A LYS 14 n 14 LYS 14 A ALA 15 n 15 ALA 15 A TRP 16 n 16 TRP 16 A LEU 17 n 17 LEU 17 A GLU 18 n 18 GLU 18 A HIS 19 n 19 HIS 19 A ALA 20 n 20 ALA 20 A LEU 21 n 21 LEU 21 A PRO 22 n 22 PRO 22 A LEU 23 n 23 LEU 23 A ILE 24 n 24 ILE 24 A ALA 25 n 25 ALA 25 A ASN 26 n 26 ASN 26 A GLN 27 n 27 GLN 27 A LEU 28 n 28 LEU 28 A ASN 29 n 29 ASN 29 A GLY 30 n 30 GLY 30 A ARG 31 n 31 ARG 31 A ARG 32 n 32 ARG 32 A SER 33 n 33 SER 33 A ALA 34 n 34 ALA 34 A VAL 35 n 35 VAL 35 A PHE 36 n 36 PHE 36 A ILE 37 n 37 ILE 37 A PRO 38 n 38 PRO 38 A PHE 39 n 39 PHE 39 A ALA 40 n 40 ALA 40 A GLY 41 n 41 GLY 41 A VAL 42 n 42 VAL 42 A THR 43 n 43 THR 43 A GLN 44 n 44 GLN 44 A THR 45 n 45 THR 45 A TRP 46 n 46 TRP 46 A ASP 47 n 47 ASP 47 A GLU 48 n 48 GLU 48 A TYR 49 n 49 TYR 49 A THR 50 n 50 THR 50 A ASP 51 n 51 ASP 51 A LYS 52 n 52 LYS 52 A THR 53 n 53 THR 53 A ALA 54 n 54 ALA 54 A GLU 55 n 55 GLU 55 A VAL 56 n 56 VAL 56 A LEU 57 n 57 LEU 57 A ALA 58 n 58 ALA 58 A PRO 59 n 59 PRO 59 A LEU 60 n 60 LEU 60 A GLY 61 n 61 GLY 61 A VAL 62 n 62 VAL 62 A ASN 63 n 63 ASN 63 A VAL 64 n 64 VAL 64 A THR 65 n 65 THR 65 A GLY 66 n 66 GLY 66 A ILE 67 n 67 ILE 67 A HIS 68 n 68 HIS 68 A ARG 69 n 69 ARG 69 A VAL 70 n 70 VAL 70 A ALA 71 n 71 ALA 71 A ASP 72 n 72 ASP 72 A PRO 73 n 73 PRO 73 A LEU 74 n 74 LEU 74 A ALA 75 n 75 ALA 75 A ALA 76 n 76 ALA 76 A ILE 77 n 77 ILE 77 A GLU 78 n 78 GLU 78 A LYS 79 n 79 LYS 79 A ALA 80 n 80 ALA 80 A GLU 81 n 81 GLU 81 A ILE 82 n 82 ILE 82 A ILE 83 n 83 ILE 83 A ILE 84 n 84 ILE 84 A VAL 85 n 85 VAL 85 A GLY 86 n 86 GLY 86 A GLY 87 n 87 GLY 87 A GLY 88 n 88 GLY 88 A ASN 89 n 89 ASN 89 A THR 90 n 90 THR 90 A PHE 91 n 91 PHE 91 A GLN 92 n 92 GLN 92 A LEU 93 n 93 LEU 93 A LEU 94 n 94 LEU 94 A LYS 95 n 95 LYS 95 A GLU 96 n 96 GLU 96 A SER 97 n 97 SER 97 A ARG 98 n 98 ARG 98 A GLU 99 n 99 GLU 99 A ARG 100 n 100 ARG 100 A GLY 101 n 101 GLY 101 A LEU 102 n 102 LEU 102 A LEU 103 n 103 LEU 103 A ALA 104 n 104 ALA 104 A PRO 105 n 105 PRO 105 A MET 106 n 106 MET 106 A ALA 107 n 107 ALA 107 A ASP 108 n 108 ASP 108 A ARG 109 n 109 ARG 109 A VAL 110 n 110 VAL 110 A LYS 111 n 111 LYS 111 A ARG 112 n 112 ARG 112 A GLY 113 n 113 GLY 113 A ALA 114 n 114 ALA 114 A LEU 115 n 115 LEU 115 A TYR 116 n 116 TYR 116 A ILE 117 n 117 ILE 117 A GLY 118 n 118 GLY 118 A TRP 119 n 119 TRP 119 A SER 120 n 120 SER 120 A ALA 121 n 121 ALA 121 A GLY 122 n 122 GLY 122 A ALA 123 n 123 ALA 123 A ASN 124 n 124 ASN 124 A LEU 125 n 125 LEU 125 A ALA 126 n 126 ALA 126 A CYS 127 n 127 CYS 127 A PRO 128 n 128 PRO 128 A THR 129 n 129 THR 129 A ILE 130 n 130 ILE 130 A ARG 131 n 131 ARG 131 A THR 132 n 132 THR 132 A THR 133 n 133 THR 133 A ASN 134 n 134 ASN 134 A ASP 135 n 135 ASP 135 A MET 136 n 136 MET 136 A PRO 137 n 137 PRO 137 A ILE 138 n 138 ILE 138 A VAL 139 n 139 VAL 139 A ASP 140 n 140 ASP 140 A PRO 141 n 141 PRO 141 A ASN 142 n 142 ASN 142 A GLY 143 n 143 GLY 143 A PHE 144 n 144 PHE 144 A ASP 145 n 145 ASP 145 A ALA 146 n 146 ALA 146 A LEU 147 n 147 LEU 147 A ASP 148 n 148 ASP 148 A LEU 149 n 149 LEU 149 A PHE 150 n 150 PHE 150 A PRO 151 n 151 PRO 151 A LEU 152 n 152 LEU 152 A GLN 153 n 153 GLN 153 A ILE 154 n 154 ILE 154 A ASN 155 n 155 ASN 155 A PRO 156 n 156 PRO 156 A HIS 157 n 157 HIS 157 A PHE 158 n 158 PHE 158 A THR 159 n 159 THR 159 A ASN 160 n 160 ASN 160 A n 161 161 A n 162 162 A n 163 163 A n 164 164 A n 165 165 A n 166 166 A n 167 167 A n 168 168 A n 169 169 A THR 170 n 170 THR 170 A ARG 171 n 171 ARG 171 A GLU 172 n 172 GLU 172 A GLN 173 n 173 GLN 173 A ARG 174 n 174 ARG 174 A ILE 175 n 175 ILE 175 A ARG 176 n 176 ARG 176 A GLU 177 n 177 GLU 177 A LEU 178 n 178 LEU 178 A LEU 179 n 179 LEU 179 A VAL 180 n 180 VAL 180 A VAL 181 n 181 VAL 181 A ALA 182 n 182 ALA 182 A PRO 183 n 183 PRO 183 A GLU 184 n 184 GLU 184 A LEU 185 n 185 LEU 185 A THR 186 n 186 THR 186 A VAL 187 n 187 VAL 187 A ILE 188 n 188 ILE 188 A GLY 189 n 189 GLY 189 A LEU 190 n 190 LEU 190 A PRO 191 n 191 PRO 191 A GLU 192 n 192 GLU 192 A GLY 193 n 193 GLY 193 A ASN 194 n 194 ASN 194 A TRP 195 n 195 TRP 195 A ILE 196 n 196 ILE 196 A GLN 197 n 197 GLN 197 A VAL 198 n 198 VAL 198 A SER 199 n 199 SER 199 A ASN 200 n 200 ASN 200 A GLY 201 n 201 GLY 201 A GLN 202 n 202 GLN 202 A ALA 203 n 203 ALA 203 A VAL 204 n 204 VAL 204 A LEU 205 n 205 LEU 205 A GLY 206 n 206 GLY 206 A GLY 207 n 207 GLY 207 A PRO 208 n 208 PRO 208 A ASN 209 n 209 ASN 209 A THR 210 n 210 THR 210 A THR 211 n 211 THR 211 A TRP 212 n 212 TRP 212 A VAL 213 n 213 VAL 213 A PHE 214 n 214 PHE 214 A LYS 215 n 215 LYS 215 A ALA 216 n 216 ALA 216 A GLY 217 n 217 GLY 217 A GLU 218 n 218 GLU 218 A GLU 219 n 219 GLU 219 A ALA 220 n 220 ALA 220 A VAL 221 n 221 VAL 221 A ALA 222 n 222 ALA 222 A LEU 223 n 223 LEU 223 A GLU 224 n 224 GLU 224 A ALA 225 n 225 ALA 225 A GLY 226 n 226 GLY 226 A HIS 227 n 227 HIS 227 A ARG 228 n 228 ARG 228 A PHE 229 n 229 PHE 229 A author_defined_assembly 1 monomeric A ASP 148 A OD1 ASP 148 4_545 A CD 1001 B CD CD 1_555 A ASP 148 A OD2 ASP 148 4_545 54.0 A ASP 148 A OD1 ASP 148 4_545 A CD 1001 B CD CD 1_555 A GLU 224 A OE1 GLU 224 1_555 147.9 A ASP 148 A OD2 ASP 148 4_545 A CD 1001 B CD CD 1_555 A GLU 224 A OE1 GLU 224 1_555 102.1 A ASP 148 A OD1 ASP 148 4_545 A CD 1001 B CD CD 1_555 A GLU 224 A OE2 GLU 224 1_555 148.0 A ASP 148 A OD2 ASP 148 4_545 A CD 1001 B CD CD 1_555 A GLU 224 A OE2 GLU 224 1_555 105.7 A GLU 224 A OE1 GLU 224 1_555 A CD 1001 B CD CD 1_555 A GLU 224 A OE2 GLU 224 1_555 50.0 A ASP 148 A OD1 ASP 148 4_545 A CD 1001 B CD CD 1_555 A HIS 227 A ND1 HIS 227 1_555 89.5 A ASP 148 A OD2 ASP 148 4_545 A CD 1001 B CD CD 1_555 A HIS 227 A ND1 HIS 227 1_555 143.5 A GLU 224 A OE1 GLU 224 1_555 A CD 1001 B CD CD 1_555 A HIS 227 A ND1 HIS 227 1_555 112.3 A GLU 224 A OE2 GLU 224 1_555 A CD 1001 B CD CD 1_555 A HIS 227 A ND1 HIS 227 1_555 105.7 A ASP 148 A OD1 ASP 148 4_545 A CD 1001 B CD CD 1_555 A HOH 1068 C O HOH 1_555 78.9 A ASP 148 A OD2 ASP 148 4_545 A CD 1001 B CD CD 1_555 A HOH 1068 C O HOH 1_555 86.0 A GLU 224 A OE1 GLU 224 1_555 A CD 1001 B CD CD 1_555 A HOH 1068 C O HOH 1_555 78.3 A GLU 224 A OE2 GLU 224 1_555 A CD 1001 B CD CD 1_555 A HOH 1068 C O HOH 1_555 128.2 A HIS 227 A ND1 HIS 227 1_555 A CD 1001 B CD CD 1_555 A HOH 1068 C O HOH 1_555 89.0 A ASP 148 A OD1 ASP 148 4_545 A CD 1001 B CD CD 1_555 A HOH 1110 C O HOH 1_555 76.6 A ASP 148 A OD2 ASP 148 4_545 A CD 1001 B CD CD 1_555 A HOH 1110 C O HOH 1_555 79.2 A GLU 224 A OE1 GLU 224 1_555 A CD 1001 B CD CD 1_555 A HOH 1110 C O HOH 1_555 123.8 A GLU 224 A OE2 GLU 224 1_555 A CD 1001 B CD CD 1_555 A HOH 1110 C O HOH 1_555 75.2 A HIS 227 A ND1 HIS 227 1_555 A CD 1001 B CD CD 1_555 A HOH 1110 C O HOH 1_555 91.3 A HOH 1068 C O HOH 1_555 A CD 1001 B CD CD 1_555 A HOH 1110 C O HOH 1_555 155.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ASN 63 A O ASN 63 A N ALA 34 A N ALA 34 A N VAL 35 A N VAL 35 A O ILE 82 A O ILE 82 A N ILE 83 A N ILE 83 A O LEU 115 A O LEU 115 A N TYR 116 A N TYR 116 A O GLU 2 A O GLU 2 A N LEU 5 A N LEU 5 A O ILE 196 A O ILE 196 A N GLN 197 A N GLN 197 A O VAL 204 A O VAL 204 A N GLN 153 A N GLN 153 A O THR 186 A O THR 186 A N GLY 189 A N GLY 189 A O TRP 212 A O TRP 212 A O LYS 215 A O LYS 215 A N GLU 218 A N GLU 218 1 A HOH 1189 C HOH 1 A ALA 161 A ALA 161 1 Y 1 A LEU 162 A LEU 162 1 Y 1 A PRO 163 A PRO 163 1 Y 1 A GLU 164 A GLU 164 1 Y 1 A GLY 165 A GLY 165 1 Y 1 A HIS 166 A HIS 166 1 Y 1 A LYS 167 A LYS 167 1 Y 1 A GLY 168 A GLY 168 1 Y 1 A GLU 169 A GLU 169 1 Y 1 A A O O GLY HOH 88 1107 2.16 1 A SER 120 54.99 -120.27 1 A ALA 146 -122.95 -147.04 0.2300000 0.2180000 1.2 500.0 3488 72970 68259 93.5 freerflag (CCP4) 1 0 0 CNS_TOPPAR:protein_rep.param 1.2 500.0 192 1877 1 0 1684 0.013 1.62 24.9 9.9 1.2 20.0 1FY2 68270 0.0470000 1 14.0 2 93.6 0.2740000 1.20 1.24 5515 1.6 76.1 refinement CNS data reduction DENZO data scaling SCALEPACK phasing CNS Aspartyl Dipeptidase 1 N N 2 N N 3 N N A ALA 20 A ALA 20 HELX_P A ASN 29 A ASN 29 1 1 10 A THR 45 A THR 45 HELX_P A ALA 58 A ALA 58 1 2 14 A PRO 59 A PRO 59 HELX_P A GLY 61 A GLY 61 5 3 3 A ASP 72 A ASP 72 HELX_P A ALA 80 A ALA 80 1 4 9 A ASN 89 A ASN 89 HELX_P A ARG 100 A ARG 100 1 5 12 A LEU 102 A LEU 102 HELX_P A ARG 112 A ARG 112 1 6 11 A SER 120 A SER 120 HELX_P A ALA 126 A ALA 126 1 7 7 A THR 170 A THR 170 HELX_P A ALA 182 A ALA 182 1 8 13 metalc 2.502 A ASP 148 A OD1 ASP 148 4_545 A CD 1001 B CD CD 1_555 metalc 2.275 A ASP 148 A OD2 ASP 148 4_545 A CD 1001 B CD CD 1_555 metalc 2.578 A GLU 224 A OE1 GLU 224 1_555 A CD 1001 B CD CD 1_555 metalc 2.595 A GLU 224 A OE2 GLU 224 1_555 A CD 1001 B CD CD 1_555 metalc 2.247 A HIS 227 A ND1 HIS 227 1_555 A CD 1001 B CD CD 1_555 metalc 2.509 A CD 1001 B CD CD 1_555 A HOH 1068 C O HOH 1_555 metalc 2.488 A CD 1001 B CD CD 1_555 A HOH 1110 C O HOH 1_555 HYDROLASE serine protease, peptidase, catalytic triad, strand-helix motif, HYDROLASE PEPE_SALTY UNP 1 1 P36936 MELLLLSNSTLPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKA EIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPHFTN ALPEGHKGETREQRIRELLVVAPELTVIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGEEAVALEAGHRF 1 229 1FY2 1 229 P36936 A 1 1 229 7 4 parallel parallel parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ASN 63 A ASN 63 A GLY 66 A GLY 66 A SER 33 A SER 33 A ILE 37 A ILE 37 A ILE 82 A ILE 82 A VAL 85 A VAL 85 A LEU 115 A LEU 115 A TRP 119 A TRP 119 A GLU 2 A GLU 2 A LEU 6 A LEU 6 A TRP 195 A TRP 195 A VAL 198 A VAL 198 A ALA 203 A ALA 203 A GLY 206 A GLY 206 A GLN 153 A GLN 153 A ASN 155 A ASN 155 A THR 186 A THR 186 A GLY 189 A GLY 189 A THR 211 A THR 211 A LYS 215 A LYS 215 A GLU 218 A GLU 218 A LEU 223 A LEU 223 BINDING SITE FOR RESIDUE CD A 1001 A CD 1001 Software 5 A ASP 148 A ASP 148 5 4_545 A GLU 224 A GLU 224 5 1_555 A HIS 227 A HIS 227 5 1_555 A HOH 1068 C HOH 5 1_555 A HOH 1110 C HOH 5 1_555 5 C 1 2 1