0.018709
0.000000
0.007238
0.000000
0.011468
0.000000
0.000000
0.000000
0.017526
0.00000
0.00000
0.00000
Devedjiev, Y.
Symersky, J.
Singh, R.
Brouillette, W.
Muccio, D.
Jedrzejas, M.
Brouillette, C.
DeLucas, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
111.15
90.00
53.450
87.200
61.180
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
H2 O7 P2 -2
175.959
PYROPHOSPHATE 2-
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
O
N
19
N
C
N
20
R
C
N
21
N
O
N
22
S
C
N
23
N
O
N
24
R
C
N
25
N
O
N
26
R
C
Y
27
N
N
Y
28
N
C
Y
29
N
N
Y
30
N
C
Y
31
N
C
N
32
N
N
Y
33
N
N
Y
34
N
C
Y
35
N
N
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
C
N
118
N
O
N
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
N
N
151
N
C
N
152
N
C
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
N
N
161
S
C
N
162
N
C
N
163
N
O
N
164
N
C
Y
165
N
C
Y
166
N
N
Y
167
N
C
Y
168
N
C
Y
169
N
N
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
S
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
N
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
S
N
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
MG
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
P
N
298
N
O
N
299
N
O
N
300
N
O
N
301
N
O
N
302
N
P
N
303
N
O
N
304
N
O
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
doub
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
Y
274
N
doub
Y
275
N
sing
Y
276
N
sing
N
277
N
sing
Y
278
N
doub
N
279
N
sing
Y
280
N
doub
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
57
806
812
10.1107/S0907444901003523
11375500
Stabilization of active-site loops in NH3-dependent NAD+ synthetase from Bacillus subtilis.
2001
10.2210/pdb1fyd/pdb
pdb_00001fyd
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
IMAGE PLATE
RIGAKU RAXIS II
SINGLE WAVELENGTH
M
x-ray
1
1.0
ROTATING ANODE
RIGAKU
30303.994
NH(3)-DEPENDENT NAD(+) SYNTHETASE
6.3.5.1
2
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
347.221
ADENOSINE MONOPHOSPHATE
1
syn
non-polymer
175.959
PYROPHOSPHATE 2-
1
syn
non-polymer
18.015
water
187
nat
water
NAD+SYNTHETASE
no
no
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Bacillus
Escherichia
sample
1423
Bacillus subtilis
562
Escherichia coli
1
2.19
43.92
VAPOR DIFFUSION
5.2
PEG 400, sodium acetate, magnesium chloride, ATP, pH 5.2, VAPOR DIFFUSION, temperature 301.0K
301.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Other
Data collection
Database references
Derived calculations
1
0
2001-06-06
1
1
2008-04-27
1
2
2011-07-13
1
3
2015-12-30
1
4
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1EE1 contains the the same protein complexed with 1 molecule ATP, two molecules deamido-NAD, and one MG ion
RCSB
Y
RCSB
2000-09-28
REL
REL
MG
MAGNESIUM ION
AMP
ADENOSINE MONOPHOSPHATE
POP
PYROPHOSPHATE 2-
HOH
water
MG
2500
2
MG
MG
2500
A
AMP
4000
3
AMP
AMP
4000
A
PP
5000
4
POP
POP
5000
A
HOH
2001
5
HOH
HOH
2001
A
HOH
2002
5
HOH
HOH
2002
A
HOH
2003
5
HOH
HOH
2003
A
HOH
2005
5
HOH
HOH
2005
A
HOH
2006
5
HOH
HOH
2006
A
HOH
2008
5
HOH
HOH
2008
A
HOH
2009
5
HOH
HOH
2009
A
HOH
2012
5
HOH
HOH
2012
A
HOH
2013
5
HOH
HOH
2013
A
HOH
2027
5
HOH
HOH
2027
A
HOH
2028
5
HOH
HOH
2028
A
HOH
2030
5
HOH
HOH
2030
A
HOH
2031
5
HOH
HOH
2031
A
HOH
2034
5
HOH
HOH
2034
A
HOH
2037
5
HOH
HOH
2037
A
HOH
2038
5
HOH
HOH
2038
A
HOH
2040
5
HOH
HOH
2040
A
HOH
2046
5
HOH
HOH
2046
A
HOH
2047
5
HOH
HOH
2047
A
HOH
2050
5
HOH
HOH
2050
A
HOH
2051
5
HOH
HOH
2051
A
HOH
2052
5
HOH
HOH
2052
A
HOH
2053
5
HOH
HOH
2053
A
HOH
2055
5
HOH
HOH
2055
A
HOH
2056
5
HOH
HOH
2056
A
HOH
2057
5
HOH
HOH
2057
A
HOH
2058
5
HOH
HOH
2058
A
HOH
2060
5
HOH
HOH
2060
A
HOH
2061
5
HOH
HOH
2061
A
HOH
2062
5
HOH
HOH
2062
A
HOH
2065
5
HOH
HOH
2065
A
HOH
2066
5
HOH
HOH
2066
A
HOH
2067
5
HOH
HOH
2067
A
HOH
2068
5
HOH
HOH
2068
A
HOH
2070
5
HOH
HOH
2070
A
HOH
2072
5
HOH
HOH
2072
A
HOH
2073
5
HOH
HOH
2073
A
HOH
2076
5
HOH
HOH
2076
A
HOH
2078
5
HOH
HOH
2078
A
HOH
2080
5
HOH
HOH
2080
A
HOH
2082
5
HOH
HOH
2082
A
HOH
2084
5
HOH
HOH
2084
A
HOH
2085
5
HOH
HOH
2085
A
HOH
2087
5
HOH
HOH
2087
A
HOH
2088
5
HOH
HOH
2088
A
HOH
2090
5
HOH
HOH
2090
A
HOH
2095
5
HOH
HOH
2095
A
HOH
2097
5
HOH
HOH
2097
A
HOH
2100
5
HOH
HOH
2100
A
HOH
2101
5
HOH
HOH
2101
A
HOH
2102
5
HOH
HOH
2102
A
HOH
2105
5
HOH
HOH
2105
A
HOH
2106
5
HOH
HOH
2106
A
HOH
2107
5
HOH
HOH
2107
A
HOH
2111
5
HOH
HOH
2111
A
HOH
2112
5
HOH
HOH
2112
A
HOH
2114
5
HOH
HOH
2114
A
HOH
2115
5
HOH
HOH
2115
A
HOH
2116
5
HOH
HOH
2116
A
HOH
2117
5
HOH
HOH
2117
A
HOH
2118
5
HOH
HOH
2118
A
HOH
2119
5
HOH
HOH
2119
A
HOH
2120
5
HOH
HOH
2120
A
HOH
2121
5
HOH
HOH
2121
A
HOH
2122
5
HOH
HOH
2122
A
HOH
2125
5
HOH
HOH
2125
A
HOH
2126
5
HOH
HOH
2126
A
HOH
2128
5
HOH
HOH
2128
A
HOH
2132
5
HOH
HOH
2132
A
HOH
2133
5
HOH
HOH
2133
A
HOH
2135
5
HOH
HOH
2135
A
HOH
2137
5
HOH
HOH
2137
A
HOH
2138
5
HOH
HOH
2138
A
HOH
2139
5
HOH
HOH
2139
A
HOH
2141
5
HOH
HOH
2141
A
HOH
2142
5
HOH
HOH
2142
A
HOH
2143
5
HOH
HOH
2143
A
HOH
2144
5
HOH
HOH
2144
A
HOH
2145
5
HOH
HOH
2145
A
HOH
2146
5
HOH
HOH
2146
A
HOH
2147
5
HOH
HOH
2147
A
HOH
2148
5
HOH
HOH
2148
A
HOH
2149
5
HOH
HOH
2149
A
HOH
2151
5
HOH
HOH
2151
A
HOH
2152
5
HOH
HOH
2152
A
HOH
2154
5
HOH
HOH
2154
A
HOH
2155
5
HOH
HOH
2155
A
HOH
2161
5
HOH
HOH
2161
A
HOH
2162
5
HOH
HOH
2162
A
HOH
2163
5
HOH
HOH
2163
A
HOH
2164
5
HOH
HOH
2164
A
HOH
2165
5
HOH
HOH
2165
A
HOH
2167
5
HOH
HOH
2167
A
HOH
2168
5
HOH
HOH
2168
A
HOH
2169
5
HOH
HOH
2169
A
HOH
2172
5
HOH
HOH
2172
A
HOH
2175
5
HOH
HOH
2175
A
HOH
2176
5
HOH
HOH
2176
A
HOH
2179
5
HOH
HOH
2179
A
HOH
2180
5
HOH
HOH
2180
A
HOH
2181
5
HOH
HOH
2181
A
HOH
2182
5
HOH
HOH
2182
A
HOH
2183
5
HOH
HOH
2183
A
HOH
2185
5
HOH
HOH
2185
A
HOH
2186
5
HOH
HOH
2186
A
HOH
2187
5
HOH
HOH
2187
A
HOH
2004
5
HOH
HOH
2004
B
HOH
2007
5
HOH
HOH
2007
B
HOH
2010
5
HOH
HOH
2010
B
HOH
2011
5
HOH
HOH
2011
B
HOH
2014
5
HOH
HOH
2014
B
HOH
2015
5
HOH
HOH
2015
B
HOH
2016
5
HOH
HOH
2016
B
HOH
2017
5
HOH
HOH
2017
B
HOH
2018
5
HOH
HOH
2018
B
HOH
2019
5
HOH
HOH
2019
B
HOH
2020
5
HOH
HOH
2020
B
HOH
2021
5
HOH
HOH
2021
B
HOH
2022
5
HOH
HOH
2022
B
HOH
2023
5
HOH
HOH
2023
B
HOH
2024
5
HOH
HOH
2024
B
HOH
2025
5
HOH
HOH
2025
B
HOH
2026
5
HOH
HOH
2026
B
HOH
2029
5
HOH
HOH
2029
B
HOH
2032
5
HOH
HOH
2032
B
HOH
2033
5
HOH
HOH
2033
B
HOH
2035
5
HOH
HOH
2035
B
HOH
2036
5
HOH
HOH
2036
B
HOH
2039
5
HOH
HOH
2039
B
HOH
2041
5
HOH
HOH
2041
B
HOH
2042
5
HOH
HOH
2042
B
HOH
2043
5
HOH
HOH
2043
B
HOH
2044
5
HOH
HOH
2044
B
HOH
2045
5
HOH
HOH
2045
B
HOH
2048
5
HOH
HOH
2048
B
HOH
2049
5
HOH
HOH
2049
B
HOH
2054
5
HOH
HOH
2054
B
HOH
2059
5
HOH
HOH
2059
B
HOH
2063
5
HOH
HOH
2063
B
HOH
2064
5
HOH
HOH
2064
B
HOH
2069
5
HOH
HOH
2069
B
HOH
2071
5
HOH
HOH
2071
B
HOH
2074
5
HOH
HOH
2074
B
HOH
2075
5
HOH
HOH
2075
B
HOH
2077
5
HOH
HOH
2077
B
HOH
2079
5
HOH
HOH
2079
B
HOH
2081
5
HOH
HOH
2081
B
HOH
2083
5
HOH
HOH
2083
B
HOH
2086
5
HOH
HOH
2086
B
HOH
2089
5
HOH
HOH
2089
B
HOH
2091
5
HOH
HOH
2091
B
HOH
2092
5
HOH
HOH
2092
B
HOH
2093
5
HOH
HOH
2093
B
HOH
2094
5
HOH
HOH
2094
B
HOH
2096
5
HOH
HOH
2096
B
HOH
2098
5
HOH
HOH
2098
B
HOH
2099
5
HOH
HOH
2099
B
HOH
2103
5
HOH
HOH
2103
B
HOH
2104
5
HOH
HOH
2104
B
HOH
2108
5
HOH
HOH
2108
B
HOH
2109
5
HOH
HOH
2109
B
HOH
2110
5
HOH
HOH
2110
B
HOH
2113
5
HOH
HOH
2113
B
HOH
2123
5
HOH
HOH
2123
B
HOH
2124
5
HOH
HOH
2124
B
HOH
2127
5
HOH
HOH
2127
B
HOH
2129
5
HOH
HOH
2129
B
HOH
2130
5
HOH
HOH
2130
B
HOH
2131
5
HOH
HOH
2131
B
HOH
2134
5
HOH
HOH
2134
B
HOH
2136
5
HOH
HOH
2136
B
HOH
2140
5
HOH
HOH
2140
B
HOH
2150
5
HOH
HOH
2150
B
HOH
2153
5
HOH
HOH
2153
B
HOH
2156
5
HOH
HOH
2156
B
HOH
2157
5
HOH
HOH
2157
B
HOH
2158
5
HOH
HOH
2158
B
HOH
2159
5
HOH
HOH
2159
B
HOH
2160
5
HOH
HOH
2160
B
HOH
2166
5
HOH
HOH
2166
B
HOH
2170
5
HOH
HOH
2170
B
HOH
2171
5
HOH
HOH
2171
B
HOH
2173
5
HOH
HOH
2173
B
HOH
2174
5
HOH
HOH
2174
B
HOH
2177
5
HOH
HOH
2177
B
HOH
2178
5
HOH
HOH
2178
B
HOH
2184
5
HOH
HOH
2184
B
SER
1
n
1
SER
1
A
MET
2
n
2
MET
2
A
GLN
3
n
3
GLN
3
A
GLU
4
n
4
GLU
4
A
LYS
5
n
5
LYS
5
A
ILE
6
n
6
ILE
6
A
MET
7
n
7
MET
7
A
ARG
8
n
8
ARG
8
A
GLU
9
n
9
GLU
9
A
LEU
10
n
10
LEU
10
A
HIS
11
n
11
HIS
11
A
VAL
12
n
12
VAL
12
A
LYS
13
n
13
LYS
13
A
PRO
14
n
14
PRO
14
A
SER
15
n
15
SER
15
A
ILE
16
n
16
ILE
16
A
ASP
17
n
17
ASP
17
A
PRO
18
n
18
PRO
18
A
LYS
19
n
19
LYS
19
A
GLN
20
n
20
GLN
20
A
GLU
21
n
21
GLU
21
A
ILE
22
n
22
ILE
22
A
GLU
23
n
23
GLU
23
A
ASP
24
n
24
ASP
24
A
ARG
25
n
25
ARG
25
A
VAL
26
n
26
VAL
26
A
ASN
27
n
27
ASN
27
A
PHE
28
n
28
PHE
28
A
LEU
29
n
29
LEU
29
A
LYS
30
n
30
LYS
30
A
GLN
31
n
31
GLN
31
A
TYR
32
n
32
TYR
32
A
VAL
33
n
33
VAL
33
A
LYS
34
n
34
LYS
34
A
LYS
35
n
35
LYS
35
A
THR
36
n
36
THR
36
A
GLY
37
n
37
GLY
37
A
ALA
38
n
38
ALA
38
A
LYS
39
n
39
LYS
39
A
GLY
40
n
40
GLY
40
A
PHE
41
n
41
PHE
41
A
VAL
42
n
42
VAL
42
A
LEU
43
n
43
LEU
43
A
GLY
44
n
44
GLY
44
A
ILE
45
n
45
ILE
45
A
SER
46
n
46
SER
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
GLN
49
n
49
GLN
49
A
ASP
50
n
50
ASP
50
A
SER
51
n
51
SER
51
A
THR
52
n
52
THR
52
A
LEU
53
n
53
LEU
53
A
ALA
54
n
54
ALA
54
A
GLY
55
n
55
GLY
55
A
ARG
56
n
56
ARG
56
A
LEU
57
n
57
LEU
57
A
ALA
58
n
58
ALA
58
A
GLN
59
n
59
GLN
59
A
LEU
60
n
60
LEU
60
A
ALA
61
n
61
ALA
61
A
VAL
62
n
62
VAL
62
A
GLU
63
n
63
GLU
63
A
SER
64
n
64
SER
64
A
ILE
65
n
65
ILE
65
A
ARG
66
n
66
ARG
66
A
GLU
67
n
67
GLU
67
A
GLU
68
n
68
GLU
68
A
GLY
69
n
69
GLY
69
A
GLY
70
n
70
GLY
70
A
ASP
71
n
71
ASP
71
A
ALA
72
n
72
ALA
72
A
GLN
73
n
73
GLN
73
A
PHE
74
n
74
PHE
74
A
ILE
75
n
75
ILE
75
A
ALA
76
n
76
ALA
76
A
VAL
77
n
77
VAL
77
A
ARG
78
n
78
ARG
78
A
LEU
79
n
79
LEU
79
A
PRO
80
n
80
PRO
80
A
HIS
81
n
81
HIS
81
A
GLY
82
n
82
GLY
82
A
THR
83
n
83
THR
83
A
GLN
84
n
84
GLN
84
A
GLN
85
n
85
GLN
85
A
ASP
86
n
86
ASP
86
A
GLU
87
n
87
GLU
87
A
ASP
88
n
88
ASP
88
A
ASP
89
n
89
ASP
89
A
ALA
90
n
90
ALA
90
A
GLN
91
n
91
GLN
91
A
LEU
92
n
92
LEU
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
LYS
95
n
95
LYS
95
A
PHE
96
n
96
PHE
96
A
ILE
97
n
97
ILE
97
A
LYS
98
n
98
LYS
98
A
PRO
99
n
99
PRO
99
A
ASP
100
n
100
ASP
100
A
LYS
101
n
101
LYS
101
A
SER
102
n
102
SER
102
A
TRP
103
n
103
TRP
103
A
LYS
104
n
104
LYS
104
A
PHE
105
n
105
PHE
105
A
ASP
106
n
106
ASP
106
A
ILE
107
n
107
ILE
107
A
LYS
108
n
108
LYS
108
A
SER
109
n
109
SER
109
A
THR
110
n
110
THR
110
A
VAL
111
n
111
VAL
111
A
SER
112
n
112
SER
112
A
ALA
113
n
113
ALA
113
A
PHE
114
n
114
PHE
114
A
SER
115
n
115
SER
115
A
ASP
116
n
116
ASP
116
A
GLN
117
n
117
GLN
117
A
TYR
118
n
118
TYR
118
A
GLN
119
n
119
GLN
119
A
GLN
120
n
120
GLN
120
A
GLU
121
n
121
GLU
121
A
THR
122
n
122
THR
122
A
GLY
123
n
123
GLY
123
A
ASP
124
n
124
ASP
124
A
GLN
125
n
125
GLN
125
A
LEU
126
n
126
LEU
126
A
THR
127
n
127
THR
127
A
ASP
128
n
128
ASP
128
A
PHE
129
n
129
PHE
129
A
ASN
130
n
130
ASN
130
A
LYS
131
n
131
LYS
131
A
GLY
132
n
132
GLY
132
A
ASN
133
n
133
ASN
133
A
VAL
134
n
134
VAL
134
A
LYS
135
n
135
LYS
135
A
ALA
136
n
136
ALA
136
A
ARG
137
n
137
ARG
137
A
THR
138
n
138
THR
138
A
ARG
139
n
139
ARG
139
A
MET
140
n
140
MET
140
A
ILE
141
n
141
ILE
141
A
ALA
142
n
142
ALA
142
A
GLN
143
n
143
GLN
143
A
TYR
144
n
144
TYR
144
A
ALA
145
n
145
ALA
145
A
ILE
146
n
146
ILE
146
A
GLY
147
n
147
GLY
147
A
GLY
148
n
148
GLY
148
A
GLN
149
n
149
GLN
149
A
GLU
150
n
150
GLU
150
A
GLY
151
n
151
GLY
151
A
LEU
152
n
152
LEU
152
A
LEU
153
n
153
LEU
153
A
VAL
154
n
154
VAL
154
A
LEU
155
n
155
LEU
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
ASP
158
n
158
ASP
158
A
HIS
159
n
159
HIS
159
A
ALA
160
n
160
ALA
160
A
ALA
161
n
161
ALA
161
A
GLU
162
n
162
GLU
162
A
ALA
163
n
163
ALA
163
A
VAL
164
n
164
VAL
164
A
THR
165
n
165
THR
165
A
GLY
166
n
166
GLY
166
A
PHE
167
n
167
PHE
167
A
PHE
168
n
168
PHE
168
A
THR
169
n
169
THR
169
A
LYS
170
n
170
LYS
170
A
TYR
171
n
171
TYR
171
A
GLY
172
n
172
GLY
172
A
ASP
173
n
173
ASP
173
A
GLY
174
n
174
GLY
174
A
GLY
175
n
175
GLY
175
A
ALA
176
n
176
ALA
176
A
ASP
177
n
177
ASP
177
A
LEU
178
n
178
LEU
178
A
LEU
179
n
179
LEU
179
A
PRO
180
n
180
PRO
180
A
LEU
181
n
181
LEU
181
A
THR
182
n
182
THR
182
A
GLY
183
n
183
GLY
183
A
LEU
184
n
184
LEU
184
A
THR
185
n
185
THR
185
A
LYS
186
n
186
LYS
186
A
ARG
187
n
187
ARG
187
A
GLN
188
n
188
GLN
188
A
GLY
189
n
189
GLY
189
A
ARG
190
n
190
ARG
190
A
THR
191
n
191
THR
191
A
LEU
192
n
192
LEU
192
A
LEU
193
n
193
LEU
193
A
LYS
194
n
194
LYS
194
A
GLU
195
n
195
GLU
195
A
LEU
196
n
196
LEU
196
A
GLY
197
n
197
GLY
197
A
ALA
198
n
198
ALA
198
A
PRO
199
n
199
PRO
199
A
GLU
200
n
200
GLU
200
A
ARG
201
n
201
ARG
201
A
LEU
202
n
202
LEU
202
A
TYR
203
n
203
TYR
203
A
LEU
204
n
204
LEU
204
A
LYS
205
n
205
LYS
205
A
GLU
206
n
206
GLU
206
A
PRO
207
n
207
PRO
207
A
THR
208
n
208
THR
208
A
ALA
209
n
209
ALA
209
A
ASP
210
n
210
ASP
210
A
LEU
211
n
211
LEU
211
A
LEU
212
n
212
LEU
212
A
ASP
213
n
213
ASP
213
A
GLU
214
n
214
GLU
214
A
LYS
215
n
215
LYS
215
A
PRO
216
n
216
PRO
216
A
GLN
217
n
217
GLN
217
A
GLN
218
n
218
GLN
218
A
SER
219
n
219
SER
219
A
ASP
220
n
220
ASP
220
A
GLU
221
n
221
GLU
221
A
THR
222
n
222
THR
222
A
GLU
223
n
223
GLU
223
A
LEU
224
n
224
LEU
224
A
GLY
225
n
225
GLY
225
A
ILE
226
n
226
ILE
226
A
SER
227
n
227
SER
227
A
TYR
228
n
228
TYR
228
A
ASP
229
n
229
ASP
229
A
GLU
230
n
230
GLU
230
A
ILE
231
n
231
ILE
231
A
ASP
232
n
232
ASP
232
A
ASP
233
n
233
ASP
233
A
TYR
234
n
234
TYR
234
A
LEU
235
n
235
LEU
235
A
GLU
236
n
236
GLU
236
A
GLY
237
n
237
GLY
237
A
LYS
238
n
238
LYS
238
A
GLU
239
n
239
GLU
239
A
VAL
240
n
240
VAL
240
A
SER
241
n
241
SER
241
A
ALA
242
n
242
ALA
242
A
LYS
243
n
243
LYS
243
A
VAL
244
n
244
VAL
244
A
SER
245
n
245
SER
245
A
GLU
246
n
246
GLU
246
A
ALA
247
n
247
ALA
247
A
LEU
248
n
248
LEU
248
A
GLU
249
n
249
GLU
249
A
LYS
250
n
250
LYS
250
A
ARG
251
n
251
ARG
251
A
TYR
252
n
252
TYR
252
A
SER
253
n
253
SER
253
A
MET
254
n
254
MET
254
A
THR
255
n
255
THR
255
A
GLU
256
n
256
GLU
256
A
HIS
257
n
257
HIS
257
A
LYS
258
n
258
LYS
258
A
ARG
259
n
259
ARG
259
A
GLN
260
n
260
GLN
260
A
VAL
261
n
261
VAL
261
A
PRO
262
n
262
PRO
262
A
ALA
263
n
263
ALA
263
A
SER
264
n
264
SER
264
A
MET
265
n
265
MET
265
A
PHE
266
n
266
PHE
266
A
ASP
267
n
267
ASP
267
A
ASP
268
n
268
ASP
268
A
TRP
269
n
269
TRP
269
A
TRP
270
n
270
TRP
270
A
LYS
271
n
271
LYS
271
A
SER
1001
n
1
SER
1001
B
MET
1002
n
2
MET
1002
B
GLN
1003
n
3
GLN
1003
B
GLU
1004
n
4
GLU
1004
B
LYS
1005
n
5
LYS
1005
B
ILE
1006
n
6
ILE
1006
B
MET
1007
n
7
MET
1007
B
ARG
1008
n
8
ARG
1008
B
GLU
1009
n
9
GLU
1009
B
LEU
1010
n
10
LEU
1010
B
HIS
1011
n
11
HIS
1011
B
VAL
1012
n
12
VAL
1012
B
LYS
1013
n
13
LYS
1013
B
PRO
1014
n
14
PRO
1014
B
SER
1015
n
15
SER
1015
B
ILE
1016
n
16
ILE
1016
B
ASP
1017
n
17
ASP
1017
B
PRO
1018
n
18
PRO
1018
B
LYS
1019
n
19
LYS
1019
B
GLN
1020
n
20
GLN
1020
B
GLU
1021
n
21
GLU
1021
B
ILE
1022
n
22
ILE
1022
B
GLU
1023
n
23
GLU
1023
B
ASP
1024
n
24
ASP
1024
B
ARG
1025
n
25
ARG
1025
B
VAL
1026
n
26
VAL
1026
B
ASN
1027
n
27
ASN
1027
B
PHE
1028
n
28
PHE
1028
B
LEU
1029
n
29
LEU
1029
B
LYS
1030
n
30
LYS
1030
B
GLN
1031
n
31
GLN
1031
B
TYR
1032
n
32
TYR
1032
B
VAL
1033
n
33
VAL
1033
B
LYS
1034
n
34
LYS
1034
B
LYS
1035
n
35
LYS
1035
B
THR
1036
n
36
THR
1036
B
GLY
1037
n
37
GLY
1037
B
ALA
1038
n
38
ALA
1038
B
LYS
1039
n
39
LYS
1039
B
GLY
1040
n
40
GLY
1040
B
PHE
1041
n
41
PHE
1041
B
VAL
1042
n
42
VAL
1042
B
LEU
1043
n
43
LEU
1043
B
GLY
1044
n
44
GLY
1044
B
ILE
1045
n
45
ILE
1045
B
SER
1046
n
46
SER
1046
B
GLY
1047
n
47
GLY
1047
B
GLY
1048
n
48
GLY
1048
B
GLN
1049
n
49
GLN
1049
B
ASP
1050
n
50
ASP
1050
B
SER
1051
n
51
SER
1051
B
THR
1052
n
52
THR
1052
B
LEU
1053
n
53
LEU
1053
B
ALA
1054
n
54
ALA
1054
B
GLY
1055
n
55
GLY
1055
B
ARG
1056
n
56
ARG
1056
B
LEU
1057
n
57
LEU
1057
B
ALA
1058
n
58
ALA
1058
B
GLN
1059
n
59
GLN
1059
B
LEU
1060
n
60
LEU
1060
B
ALA
1061
n
61
ALA
1061
B
VAL
1062
n
62
VAL
1062
B
GLU
1063
n
63
GLU
1063
B
SER
1064
n
64
SER
1064
B
ILE
1065
n
65
ILE
1065
B
ARG
1066
n
66
ARG
1066
B
GLU
1067
n
67
GLU
1067
B
GLU
1068
n
68
GLU
1068
B
GLY
1069
n
69
GLY
1069
B
GLY
1070
n
70
GLY
1070
B
ASP
1071
n
71
ASP
1071
B
ALA
1072
n
72
ALA
1072
B
GLN
1073
n
73
GLN
1073
B
PHE
1074
n
74
PHE
1074
B
ILE
1075
n
75
ILE
1075
B
ALA
1076
n
76
ALA
1076
B
VAL
1077
n
77
VAL
1077
B
ARG
1078
n
78
ARG
1078
B
LEU
1079
n
79
LEU
1079
B
PRO
1080
n
80
PRO
1080
B
HIS
1081
n
81
HIS
1081
B
GLY
1082
n
82
GLY
1082
B
n
83
1083
B
n
84
1084
B
n
85
1085
B
n
86
1086
B
GLU
1087
n
87
GLU
1087
B
ASP
1088
n
88
ASP
1088
B
ASP
1089
n
89
ASP
1089
B
ALA
1090
n
90
ALA
1090
B
GLN
1091
n
91
GLN
1091
B
LEU
1092
n
92
LEU
1092
B
ALA
1093
n
93
ALA
1093
B
LEU
1094
n
94
LEU
1094
B
LYS
1095
n
95
LYS
1095
B
PHE
1096
n
96
PHE
1096
B
ILE
1097
n
97
ILE
1097
B
LYS
1098
n
98
LYS
1098
B
PRO
1099
n
99
PRO
1099
B
ASP
1100
n
100
ASP
1100
B
LYS
1101
n
101
LYS
1101
B
SER
1102
n
102
SER
1102
B
TRP
1103
n
103
TRP
1103
B
LYS
1104
n
104
LYS
1104
B
PHE
1105
n
105
PHE
1105
B
ASP
1106
n
106
ASP
1106
B
ILE
1107
n
107
ILE
1107
B
LYS
1108
n
108
LYS
1108
B
SER
1109
n
109
SER
1109
B
THR
1110
n
110
THR
1110
B
VAL
1111
n
111
VAL
1111
B
SER
1112
n
112
SER
1112
B
ALA
1113
n
113
ALA
1113
B
PHE
1114
n
114
PHE
1114
B
SER
1115
n
115
SER
1115
B
ASP
1116
n
116
ASP
1116
B
GLN
1117
n
117
GLN
1117
B
TYR
1118
n
118
TYR
1118
B
GLN
1119
n
119
GLN
1119
B
GLN
1120
n
120
GLN
1120
B
GLU
1121
n
121
GLU
1121
B
THR
1122
n
122
THR
1122
B
GLY
1123
n
123
GLY
1123
B
ASP
1124
n
124
ASP
1124
B
GLN
1125
n
125
GLN
1125
B
LEU
1126
n
126
LEU
1126
B
THR
1127
n
127
THR
1127
B
ASP
1128
n
128
ASP
1128
B
PHE
1129
n
129
PHE
1129
B
ASN
1130
n
130
ASN
1130
B
LYS
1131
n
131
LYS
1131
B
GLY
1132
n
132
GLY
1132
B
ASN
1133
n
133
ASN
1133
B
VAL
1134
n
134
VAL
1134
B
LYS
1135
n
135
LYS
1135
B
ALA
1136
n
136
ALA
1136
B
ARG
1137
n
137
ARG
1137
B
THR
1138
n
138
THR
1138
B
ARG
1139
n
139
ARG
1139
B
MET
1140
n
140
MET
1140
B
ILE
1141
n
141
ILE
1141
B
ALA
1142
n
142
ALA
1142
B
GLN
1143
n
143
GLN
1143
B
TYR
1144
n
144
TYR
1144
B
ALA
1145
n
145
ALA
1145
B
ILE
1146
n
146
ILE
1146
B
GLY
1147
n
147
GLY
1147
B
GLY
1148
n
148
GLY
1148
B
GLN
1149
n
149
GLN
1149
B
GLU
1150
n
150
GLU
1150
B
GLY
1151
n
151
GLY
1151
B
LEU
1152
n
152
LEU
1152
B
LEU
1153
n
153
LEU
1153
B
VAL
1154
n
154
VAL
1154
B
LEU
1155
n
155
LEU
1155
B
GLY
1156
n
156
GLY
1156
B
THR
1157
n
157
THR
1157
B
ASP
1158
n
158
ASP
1158
B
HIS
1159
n
159
HIS
1159
B
ALA
1160
n
160
ALA
1160
B
ALA
1161
n
161
ALA
1161
B
GLU
1162
n
162
GLU
1162
B
ALA
1163
n
163
ALA
1163
B
VAL
1164
n
164
VAL
1164
B
THR
1165
n
165
THR
1165
B
GLY
1166
n
166
GLY
1166
B
PHE
1167
n
167
PHE
1167
B
PHE
1168
n
168
PHE
1168
B
THR
1169
n
169
THR
1169
B
LYS
1170
n
170
LYS
1170
B
TYR
1171
n
171
TYR
1171
B
GLY
1172
n
172
GLY
1172
B
ASP
1173
n
173
ASP
1173
B
GLY
1174
n
174
GLY
1174
B
GLY
1175
n
175
GLY
1175
B
ALA
1176
n
176
ALA
1176
B
ASP
1177
n
177
ASP
1177
B
LEU
1178
n
178
LEU
1178
B
LEU
1179
n
179
LEU
1179
B
PRO
1180
n
180
PRO
1180
B
LEU
1181
n
181
LEU
1181
B
THR
1182
n
182
THR
1182
B
GLY
1183
n
183
GLY
1183
B
LEU
1184
n
184
LEU
1184
B
THR
1185
n
185
THR
1185
B
LYS
1186
n
186
LYS
1186
B
ARG
1187
n
187
ARG
1187
B
GLN
1188
n
188
GLN
1188
B
GLY
1189
n
189
GLY
1189
B
ARG
1190
n
190
ARG
1190
B
THR
1191
n
191
THR
1191
B
LEU
1192
n
192
LEU
1192
B
LEU
1193
n
193
LEU
1193
B
LYS
1194
n
194
LYS
1194
B
GLU
1195
n
195
GLU
1195
B
LEU
1196
n
196
LEU
1196
B
GLY
1197
n
197
GLY
1197
B
ALA
1198
n
198
ALA
1198
B
PRO
1199
n
199
PRO
1199
B
GLU
1200
n
200
GLU
1200
B
ARG
1201
n
201
ARG
1201
B
LEU
1202
n
202
LEU
1202
B
TYR
1203
n
203
TYR
1203
B
LEU
1204
n
204
LEU
1204
B
n
205
1205
B
n
206
1206
B
n
207
1207
B
n
208
1208
B
n
209
1209
B
n
210
1210
B
n
211
1211
B
n
212
1212
B
n
213
1213
B
n
214
1214
B
n
215
1215
B
n
216
1216
B
n
217
1217
B
n
218
1218
B
n
219
1219
B
n
220
1220
B
n
221
1221
B
n
222
1222
B
n
223
1223
B
n
224
1224
B
n
225
1225
B
ILE
1226
n
226
ILE
1226
B
SER
1227
n
227
SER
1227
B
TYR
1228
n
228
TYR
1228
B
ASP
1229
n
229
ASP
1229
B
GLU
1230
n
230
GLU
1230
B
ILE
1231
n
231
ILE
1231
B
ASP
1232
n
232
ASP
1232
B
ASP
1233
n
233
ASP
1233
B
TYR
1234
n
234
TYR
1234
B
LEU
1235
n
235
LEU
1235
B
GLU
1236
n
236
GLU
1236
B
GLY
1237
n
237
GLY
1237
B
LYS
1238
n
238
LYS
1238
B
GLU
1239
n
239
GLU
1239
B
VAL
1240
n
240
VAL
1240
B
SER
1241
n
241
SER
1241
B
ALA
1242
n
242
ALA
1242
B
LYS
1243
n
243
LYS
1243
B
VAL
1244
n
244
VAL
1244
B
SER
1245
n
245
SER
1245
B
GLU
1246
n
246
GLU
1246
B
ALA
1247
n
247
ALA
1247
B
LEU
1248
n
248
LEU
1248
B
GLU
1249
n
249
GLU
1249
B
LYS
1250
n
250
LYS
1250
B
ARG
1251
n
251
ARG
1251
B
TYR
1252
n
252
TYR
1252
B
SER
1253
n
253
SER
1253
B
MET
1254
n
254
MET
1254
B
THR
1255
n
255
THR
1255
B
GLU
1256
n
256
GLU
1256
B
HIS
1257
n
257
HIS
1257
B
LYS
1258
n
258
LYS
1258
B
ARG
1259
n
259
ARG
1259
B
GLN
1260
n
260
GLN
1260
B
VAL
1261
n
261
VAL
1261
B
PRO
1262
n
262
PRO
1262
B
ALA
1263
n
263
ALA
1263
B
SER
1264
n
264
SER
1264
B
MET
1265
n
265
MET
1265
B
PHE
1266
n
266
PHE
1266
B
ASP
1267
n
267
ASP
1267
B
ASP
1268
n
268
ASP
1268
B
TRP
1269
n
269
TRP
1269
B
TRP
1270
n
270
TRP
1270
B
LYS
1271
n
271
LYS
1271
B
author_and_software_defined_assembly
PISA
2
dimeric
6400
-54
21380
A
THR
208
A
O
THR
208
1_555
A
MG
2500
C
MG
MG
1_555
A
HOH
2186
F
O
HOH
1_555
97.6
A
THR
208
A
O
THR
208
1_555
A
MG
2500
C
MG
MG
1_555
A
HOH
2187
F
O
HOH
1_555
97.6
A
HOH
2186
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
A
HOH
2187
F
O
HOH
1_555
106.1
A
THR
208
A
O
THR
208
1_555
A
MG
2500
C
MG
MG
1_555
A
AMP
4000
D
O3P
AMP
1_555
99.7
A
HOH
2186
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
A
AMP
4000
D
O3P
AMP
1_555
81.0
A
HOH
2187
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
A
AMP
4000
D
O3P
AMP
1_555
160.2
A
THR
208
A
O
THR
208
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O5
POP
1_555
164.1
A
HOH
2186
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O5
POP
1_555
81.8
A
HOH
2187
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O5
POP
1_555
97.8
A
AMP
4000
D
O3P
AMP
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O5
POP
1_555
64.4
A
THR
208
A
O
THR
208
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O3
POP
1_555
101.2
A
HOH
2186
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O3
POP
1_555
155.6
A
HOH
2187
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O3
POP
1_555
86.7
A
AMP
4000
D
O3P
AMP
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O3
POP
1_555
80.7
A
POP
5000
E
O5
POP
1_555
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O3
POP
1_555
75.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
101
A
N
LYS
101
A
O
PHE
74
A
O
PHE
74
A
N
ILE
75
A
N
ILE
75
A
O
PHE
41
A
O
PHE
41
A
O
GLY
40
A
O
GLY
40
A
N
LEU
153
A
N
LEU
153
B
N
LYS
1101
B
N
LYS
101
B
O
PHE
1074
B
O
PHE
74
B
N
ILE
1075
B
N
ILE
75
B
O
PHE
1041
B
O
PHE
41
B
O
GLY
1040
B
O
GLY
40
B
N
LEU
1153
B
N
LEU
153
1
B
THR
1083
B
THR
83
1
Y
1
B
GLN
1084
B
GLN
84
1
Y
1
B
GLN
1085
B
GLN
85
1
Y
1
B
ASP
1086
B
ASP
86
1
Y
1
B
LYS
1205
B
LYS
205
1
Y
1
B
GLU
1206
B
GLU
206
1
Y
1
B
PRO
1207
B
PRO
207
1
Y
1
B
THR
1208
B
THR
208
1
Y
1
B
ALA
1209
B
ALA
209
1
Y
1
B
ASP
1210
B
ASP
210
1
Y
1
B
LEU
1211
B
LEU
211
1
Y
1
B
LEU
1212
B
LEU
212
1
Y
1
B
ASP
1213
B
ASP
213
1
Y
1
B
GLU
1214
B
GLU
214
1
Y
1
B
LYS
1215
B
LYS
215
1
Y
1
B
PRO
1216
B
PRO
216
1
Y
1
B
GLN
1217
B
GLN
217
1
Y
1
B
GLN
1218
B
GLN
218
1
Y
1
B
SER
1219
B
SER
219
1
Y
1
B
ASP
1220
B
ASP
220
1
Y
1
B
GLU
1221
B
GLU
221
1
Y
1
B
THR
1222
B
THR
222
1
Y
1
B
GLU
1223
B
GLU
223
1
Y
1
B
LEU
1224
B
LEU
224
1
Y
1
B
GLY
1225
B
GLY
225
1
Y
1
14.60
2.30
115.30
129.90
A
A
A
CA
CB
CG
LEU
LEU
LEU
178
178
178
N
1
15.83
2.30
115.30
131.13
B
B
B
CA
CB
CG
LEU
LEU
LEU
1178
1178
1178
N
1
A
LEU
79
-116.25
69.94
1
A
ASP
86
-92.35
36.62
1
A
TRP
269
-35.67
-34.07
1
B
LYS
1098
61.73
62.16
ALL PORTIONS OF THE BACKBONE IN SUBUNIT A ARE WELL ORDERED.
HOWEVER, BACKBONE ATOMS AND THE SIDE CHAINS OF RESIDUES
83-86 AND 205-225 IN SUBUNIT B ARE NOT VISIBLE ON THE
ELECTRON DENSITY MAP. ATP BINDING SITE IN SUBUNIT A IS FULL
OCCUPIED WITH AMP AND PP, HOWEVER, NO BINDING OF AMP, PP
AND MG2+ WAS FOUND IN SUBUNIT B.
0.2780000
0.1910000
2.25
8.0
24116
RANDOM
1
2.0
Engh & Huber
2.25
8.0
187
4288
33
0
4068
0.013
1.8
2.25
20.0
1FYD
24198
1.0
0.1500000
1
4.3
2.4
91.1
0.4100000
2.20
2.28
1
2.0
72.6
refinement
X-PLOR
3.851
data reduction
DENZO
data scaling
SCALEPACK
CRYSTAL STRUCTURE OF NH3-DEPENDENT NAD+ SYNTHETASE FROM BACILLUS SUBTILIS COMPLEXED WITH ONE MOLECULE AMP, ONE PYROPHOSPHATE ION AND ONE MG2+ ION
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
The biological assembly is a dimer constructed from chain A a symmetry partner generated by two fold
A
SER
1
A
SER
1
HELX_P
A
HIS
11
A
HIS
11
1
1
11
A
ASP
17
A
ASP
17
HELX_P
A
GLY
37
A
GLY
37
1
2
21
A
GLY
48
A
GLY
48
HELX_P
A
GLU
68
A
GLU
68
1
3
21
A
ASP
86
A
ASP
86
HELX_P
A
LYS
98
A
LYS
98
1
4
13
A
ILE
107
A
ILE
107
HELX_P
A
GLY
123
A
GLY
123
1
5
17
A
THR
127
A
THR
127
HELX_P
A
GLY
151
A
GLY
151
1
6
25
A
HIS
159
A
HIS
159
HELX_P
A
VAL
164
A
VAL
164
1
7
6
A
THR
185
A
THR
185
HELX_P
A
GLY
197
A
GLY
197
1
8
13
A
GLU
200
A
GLU
200
HELX_P
A
LYS
205
A
LYS
205
1
9
6
A
SER
219
A
SER
219
HELX_P
A
GLY
225
A
GLY
225
1
10
7
A
SER
227
A
SER
227
HELX_P
A
GLU
236
A
GLU
236
1
11
10
A
SER
241
A
SER
241
HELX_P
A
MET
254
A
MET
254
1
12
14
A
THR
255
A
THR
255
HELX_P
A
ARG
259
A
ARG
259
5
13
5
B
SER
1001
B
SER
1
HELX_P
B
LEU
1010
B
LEU
10
1
14
10
B
ASP
1017
B
ASP
17
HELX_P
B
GLY
1037
B
GLY
37
1
15
21
B
GLY
1048
B
GLY
48
HELX_P
B
GLU
1068
B
GLU
68
1
16
21
B
GLU
1087
B
GLU
87
HELX_P
B
LYS
1098
B
LYS
98
1
17
12
B
ILE
1107
B
ILE
107
HELX_P
B
GLY
1123
B
GLY
123
1
18
17
B
THR
1127
B
THR
127
HELX_P
B
GLY
1151
B
GLY
151
1
19
25
B
HIS
1159
B
HIS
159
HELX_P
B
GLY
1166
B
GLY
166
1
20
8
B
THR
1185
B
THR
185
HELX_P
B
LEU
1196
B
LEU
196
1
21
12
B
SER
1227
B
SER
227
HELX_P
B
GLU
1236
B
GLU
236
1
22
10
B
SER
1241
B
SER
241
HELX_P
B
THR
1255
B
THR
255
1
23
15
B
GLU
1256
B
GLU
256
HELX_P
B
ARG
1259
B
ARG
259
5
24
4
metalc
1.814
A
THR
208
A
O
THR
208
1_555
A
MG
2500
C
MG
MG
1_555
metalc
2.087
A
HOH
2186
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
metalc
2.208
A
HOH
2187
F
O
HOH
1_555
A
MG
2500
C
MG
MG
1_555
metalc
1.919
A
MG
2500
C
MG
MG
1_555
A
AMP
4000
D
O3P
AMP
1_555
metalc
2.525
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O5
POP
1_555
metalc
2.545
A
MG
2500
C
MG
MG
1_555
A
POP
5000
E
O3
POP
1_555
LIGASE
LYASE, AMIDOTRANSFERASE, NH3 DEPENDENT, PYROPHOSPHATASE, LIGASE
NADE_BACSU
UNP
1
1
P08164
SMQEKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLP
HGTQQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA
AEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLLKELGAPERLYLKEPTADLLDEKPQQSDETELGISYDEIDDYLEGKEV
SAKVSEALEKRYSMTEHKRQVPASMFDDWWK
1
271
1FYD
1
271
P08164
A
1
1
271
1
271
1FYD
1001
1271
P08164
B
1
1
271
4
4
parallel
parallel
parallel
parallel
parallel
parallel
A
LYS
101
A
LYS
101
A
LYS
104
A
LYS
104
A
GLN
73
A
GLN
73
A
ARG
78
A
ARG
78
A
GLY
40
A
GLY
40
A
GLY
44
A
GLY
44
A
LEU
153
A
LEU
153
A
VAL
154
A
VAL
154
B
LYS
1101
B
LYS
101
B
LYS
1104
B
LYS
104
B
GLN
1073
B
GLN
73
B
ARG
1078
B
ARG
78
B
GLY
1040
B
GLY
40
B
ILE
1045
B
ILE
45
B
LEU
1153
B
LEU
153
B
VAL
1154
B
VAL
154
BINDING SITE FOR RESIDUE MG A 2500
A
MG
2500
Software
5
BINDING SITE FOR RESIDUE AMP A 4000
A
AMP
4000
Software
19
BINDING SITE FOR RESIDUE POP A 5000
A
POP
5000
Software
14
A
THR
208
A
THR
208
5
1_555
A
HOH
2186
F
HOH
5
1_555
A
HOH
2187
F
HOH
5
1_555
A
AMP
4000
D
AMP
5
1_555
A
POP
5000
E
POP
5
1_555
A
LEU
43
A
LEU
43
19
1_555
A
GLY
44
A
GLY
44
19
1_555
A
ILE
45
A
ILE
45
19
1_555
A
SER
46
A
SER
46
19
1_555
A
SER
51
A
SER
51
19
1_555
A
ARG
78
A
ARG
78
19
1_555
A
LEU
79
A
LEU
79
19
1_555
A
GLN
84
A
GLN
84
19
1_555
A
THR
157
A
THR
157
19
1_555
A
THR
208
A
THR
208
19
1_555
A
ALA
209
A
ALA
209
19
1_555
A
HOH
2037
F
HOH
19
1_555
A
HOH
2047
F
HOH
19
1_555
A
HOH
2107
F
HOH
19
1_555
A
HOH
2111
F
HOH
19
1_555
A
HOH
2181
F
HOH
19
1_555
A
HOH
2186
F
HOH
19
1_555
A
MG
2500
C
MG
19
1_555
A
POP
5000
E
POP
19
1_555
A
SER
46
A
SER
46
14
1_555
A
GLY
48
A
GLY
48
14
1_555
A
GLN
49
A
GLN
49
14
1_555
A
ASP
50
A
ASP
50
14
1_555
A
SER
51
A
SER
51
14
1_555
A
LYS
186
A
LYS
186
14
1_555
A
PRO
207
A
PRO
207
14
1_555
A
THR
208
A
THR
208
14
1_555
A
HOH
2027
F
HOH
14
1_555
A
HOH
2119
F
HOH
14
1_555
A
HOH
2181
F
HOH
14
1_555
A
HOH
2186
F
HOH
14
1_555
A
MG
2500
C
MG
14
1_555
A
AMP
4000
D
AMP
14
1_555
4
P 1 21 1