1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Smirnov, S.
Johnson, F.
de los Santos, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C11 H16 N5 O5 P
329.249
n
2'-DEOXYARISTEROMYCIN-5'-PHOSPHATE
[ADENIN-9-YL-3-HYDROXY-CYCLOPENTAN-5-YL]-METHYL-5'-PHOSPHATE
DNA linking
C10 H14 N5 O8 P
363.221
n
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
To be Published
0353
Structural NMR characterization of an 11-mer DNA Duplex Containing a 2'-deoxyaristeromycin 8-oxo-Guanine pair, nonhydrolyzable substrate analog for the DNA repair enzyme MutY
10.2210/pdb1fyi/pdb
pdb_00001fyi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3356.238
5'-D(*CP*AP*GP*TP*GP*(2AR)P*GP*TP*CP*AP*C)-3'
1
syn
polymer
3390.210
5'-D(*GP*TP*GP*AP*CP*(8OG)P*CP*AP*CP*TP*G)-3'
1
syn
polymer
no
yes
(DC)(DA)(DG)(DT)(DG)(2AR)(DG)(DT)(DC)(DA)(DC)
CAGTGAGTCAC
A
polydeoxyribonucleotide
no
yes
(DG)(DT)(DG)(DA)(DC)(8OG)(DC)(DA)(DC)(DT)(DG)
GTGACGCACTG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
-11.348
1
19
A
1
B
22
-17.386
A_DC1:DG22_B
1
-4.672
-1.212
1.947
-1.217
10.615
1
20
A
2
B
21
-6.555
A_DA2:DT21_B
2
-6.859
0.567
0.707
-0.196
-2.368
1
19
A
3
B
20
-2.385
A_DG3:DC20_B
3
-11.421
-0.486
0.043
-0.195
9.622
1
20
A
4
B
19
-2.963
A_DT4:DA19_B
4
-16.429
-0.146
-0.043
-0.158
-9.948
1
19
A
5
B
18
3.176
A_DG5:DC18_B
5
-28.791
-0.332
-0.224
-0.200
-6.996
1
19
A
7
B
16
-7.087
A_DG7:DC16_B
6
-17.468
-0.835
0.476
-0.525
0.824
1
20
A
8
B
15
-2.985
A_DT8:DA15_B
7
-5.789
-0.308
0.180
-0.062
3.008
1
19
A
9
B
14
2.527
A_DC9:DG14_B
8
-13.497
0.957
-0.242
-0.402
-5.616
1
20
A
10
B
13
-0.833
A_DA10:DT13_B
9
7.990
-0.114
-0.714
-0.305
12.854
A
11
B
12
11.358
A_DC11:DG12_B
10
-2.315
-0.952
0.007
-0.452
2.958
44.153
A
A
1
2
-16.667
B
B
22
21
2.935
-12.329
1.180
0.044
AA_DC1DA2:DT21DG22_BB
1
6.865
-9.280
41.944
1.130
-0.974
3.645
35.919
A
A
2
3
-7.887
B
B
21
20
3.560
-4.848
-0.046
-0.940
AA_DA2DG3:DC20DT21_BB
2
1.990
-3.237
35.548
-0.757
0.389
2.747
37.516
A
A
3
4
-10.384
B
B
20
19
2.811
-6.642
-0.093
0.070
AA_DG3DT4:DA19DC20_BB
3
2.391
-3.738
36.869
0.854
0.412
2.891
40.877
A
A
4
5
32.244
B
B
19
18
3.543
21.472
0.564
-0.340
AA_DT4DG5:DC18DA19_BB
4
1.176
-1.766
34.971
-3.006
-0.669
5.596
71.431
A
A
5
7
10.865
B
B
18
16
5.837
12.631
0.486
-0.933
AA_DG5DG7:DC16DC18_BB
5
-3.716
3.197
70.366
-1.558
-0.639
2.877
33.645
A
A
7
8
3.457
B
B
16
15
2.891
1.998
0.485
-0.648
AA_DG7DT8:DA15DC16_BB
6
2.543
-4.400
33.494
-1.407
-0.472
3.033
38.577
A
A
8
9
-4.358
B
B
15
14
2.956
-2.874
0.781
-0.517
AA_DT8DC9:DG14DA15_BB
7
2.766
-4.193
38.378
-0.457
-0.869
3.717
35.701
A
A
9
10
10.557
B
B
14
13
3.712
6.423
-0.973
-0.162
AA_DC9DA10:DT13DG14_BB
8
-4.467
7.342
34.861
-1.333
0.844
2.913
34.460
A
A
10
11
-29.233
B
B
13
12
3.298
-16.565
0.397
-0.219
AA_DA10DC11:DG12DT13_BB
9
-5.306
9.364
29.864
2.264
-1.513
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-10-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_conn.pdbx_leaving_atom_flag
11-mer DNA Duplex Containing the Carbocyclic Nucleotide Analog: 2'-Deoxyaristeromycin
RCSB
Y
RCSB
2000-09-30
REL
REL
target function
15
9
2D NOESY
2D NOESY
DQF-COSY
TOCSY
50mM
6.8
1
atm
284
K
50mM
6.8
1
atm
298
K
restrained molecular dynamics
4
closest to the average
280 OD260 in 0.6 ml of 50 mM phosphate buffer, pH 6.8
90% H2O/10% D2O
280 OD260 in 0.6 ml of 50 mM phosphate buffer, pH 6.8
99.6% D2O
Varian Co.
collection
VNMR
5
MSI Co.
data analysis
Felix
95
A. Brunger
refinement
X-PLOR
3.8
500
Varian
UNITYPLUS
600
Varian
UNITYPLUS
C
1
n
1
DC
1
A
A
2
n
2
DA
2
A
G
3
n
3
DG
3
A
T
4
n
4
DT
4
A
G
5
n
5
DG
5
A
2AR
6
n
6
2AR
6
A
G
7
n
7
DG
7
A
T
8
n
8
DT
8
A
C
9
n
9
DC
9
A
A
10
n
10
DA
10
A
C
11
n
11
DC
11
A
G
12
n
1
DG
12
B
T
13
n
2
DT
13
B
G
14
n
3
DG
14
B
A
15
n
4
DA
15
B
C
16
n
5
DC
16
B
8OG
17
n
6
8OG
17
B
C
18
n
7
DC
18
B
A
19
n
8
DA
19
B
C
20
n
9
DC
20
B
T
21
n
10
DT
21
B
G
22
n
11
DG
22
B
author_defined_assembly
2
dimeric
A
2AR
6
2'-DEOXYARISTEROMYCIN-5'-PHOSPHATE
A
2AR
6
DA
B
8OG
17
B
8OG
6
DG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
B
H41
H1
DC
DG
11
12
1.23
1
A
B
N3
H21
DC
DG
11
12
1.28
1
A
B
C2
H21
DC
DG
11
12
1.50
1
A
B
O2
H21
DC
DG
11
12
1.56
1
A
B
O2
N2
DC
DG
11
12
2.02
1
A
B
N3
N2
DC
DG
11
12
2.17
4
A
B
H61
H3
DA
DT
10
13
1.33
4
A
B
H41
N1
DC
DG
11
12
1.50
4
A
B
H41
C6
DC
DG
11
12
1.52
4
A
B
N4
O6
DC
DG
11
12
2.07
4
A
B
N4
N1
DC
DG
11
12
2.19
9
A
B
H41
C6
DC
DG
11
12
1.49
9
A
B
H41
O6
DC
DG
11
12
1.55
9
A
B
N4
O6
DC
DG
11
12
1.93
9
A
B
O2
O2
DC
DT
11
13
2.00
9
A
B
O2
N2
DC
DG
11
12
2.03
9
A
B
N3
N1
DC
DG
11
12
2.06
9
A
B
C2
N2
DC
DG
11
12
2.16
9
A
B
N3
N2
DC
DG
11
12
2.18
9
A
B
N4
N1
DC
DG
11
12
2.19
1
3.18
0.30
108.30
111.48
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
3.32
0.50
113.80
117.12
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
1
4.87
0.50
113.10
117.97
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
1
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
2.73
0.30
108.30
111.03
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
4.45
0.50
113.10
117.55
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
1
-2.81
0.40
106.40
103.59
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
1
4.11
0.30
108.30
112.41
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
4.89
0.50
113.10
117.99
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
1
-3.17
0.40
106.40
103.23
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
1
1.81
0.30
108.30
110.11
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
1
3.14
0.30
108.30
111.44
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
3.96
0.50
113.80
117.76
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
1
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
2.71
0.30
108.30
111.01
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
4.54
0.50
113.10
117.64
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
1
-2.63
0.40
106.40
103.77
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
1
2.03
0.30
108.30
110.33
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
1
2.53
0.30
108.30
110.83
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
4.53
0.50
113.10
117.63
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
1
-2.63
0.40
106.40
103.77
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
1
2.09
0.30
108.30
110.39
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
1
3.78
0.50
113.80
117.58
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
1
4.27
0.30
108.30
112.57
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
1
4.27
0.30
108.30
112.57
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
2.75
0.30
108.30
111.05
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
1
3.70
0.50
113.80
117.50
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
1
4.01
0.30
108.30
112.31
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
1
1.92
0.30
108.30
110.22
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
1
2.45
0.30
108.30
110.75
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
1
4.51
0.50
113.10
117.61
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
1
-2.63
0.40
106.40
103.77
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
2
2.96
0.30
108.30
111.26
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
2
3.16
0.30
108.30
111.46
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
2
3.38
0.50
113.80
117.18
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
2
4.71
0.50
113.10
117.81
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
2
3.58
0.30
108.30
111.88
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
2
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
2
4.56
0.50
113.10
117.66
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
2
-2.74
0.40
106.40
103.66
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
2
3.69
0.30
108.30
111.99
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
2
4.85
0.50
113.10
117.95
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
2
-3.31
0.40
106.40
103.09
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
2
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
2
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
2
4.07
0.50
113.80
117.87
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
2
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
2
2.82
0.30
108.30
111.12
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
2
4.51
0.50
113.10
117.61
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
2
-2.63
0.40
106.40
103.77
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
2
1.86
0.30
108.30
110.16
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
2
2.01
0.30
108.30
110.31
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
2
4.68
0.50
113.10
117.78
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
2
-2.62
0.40
106.40
103.78
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
2
3.78
0.50
113.80
117.58
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
2
5.49
0.30
108.30
113.79
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
2
4.31
0.30
108.30
112.61
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
2
3.05
0.30
108.30
111.35
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
2
3.72
0.50
113.80
117.52
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
2
4.08
0.30
108.30
112.38
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
2
2.40
0.30
108.30
110.70
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
2
2.21
0.30
108.30
110.51
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
2
4.62
0.50
113.10
117.72
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
2
-2.69
0.40
106.40
103.71
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
3
2.93
0.30
108.30
111.23
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
3
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
3
3.38
0.50
113.80
117.18
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
3
-2.41
0.40
105.80
103.39
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
3
4.84
0.50
113.10
117.94
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
3
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
3
2.31
0.30
108.30
110.61
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
3
4.58
0.50
113.10
117.68
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
3
-2.77
0.40
106.40
103.63
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
3
4.09
0.30
108.30
112.39
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
3
4.94
0.50
113.10
118.04
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
3
-3.28
0.40
106.40
103.12
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
3
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
3
3.17
0.30
108.30
111.47
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
3
4.04
0.50
113.80
117.84
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
3
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
3
2.79
0.30
108.30
111.09
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
3
4.48
0.50
113.10
117.58
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
3
-2.61
0.40
106.40
103.79
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
3
1.99
0.30
108.30
110.29
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
3
2.46
0.30
108.30
110.76
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
3
4.60
0.50
113.10
117.70
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
3
-2.66
0.40
106.40
103.74
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
3
3.77
0.50
113.80
117.57
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
3
5.49
0.30
108.30
113.79
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
3
4.23
0.30
108.30
112.53
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
3
3.24
0.30
108.30
111.54
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
3
3.71
0.50
113.80
117.51
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
3
3.78
0.30
108.30
112.08
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
3
2.68
0.30
108.30
110.98
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
3
2.13
0.30
108.30
110.43
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
3
4.70
0.50
113.10
117.80
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
3
-2.73
0.40
106.40
103.67
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
4
3.34
0.30
108.30
111.64
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
4
3.36
0.50
113.80
117.16
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
4
-2.41
0.40
105.80
103.39
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
4
4.74
0.50
113.10
117.84
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
4
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
4
2.74
0.30
108.30
111.04
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
4
4.46
0.50
113.10
117.56
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
4
-2.77
0.40
106.40
103.63
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
4
4.04
0.30
108.30
112.34
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
4
4.84
0.50
113.10
117.94
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
4
-3.15
0.40
106.40
103.25
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
4
1.84
0.30
108.30
110.14
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
4
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
4
3.97
0.50
113.80
117.77
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
4
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
4
2.73
0.30
108.30
111.03
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
4
4.56
0.50
113.10
117.66
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
4
-2.66
0.40
106.40
103.74
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
4
1.95
0.30
108.30
110.25
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
4
2.69
0.30
108.30
110.99
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
4
4.57
0.50
113.10
117.67
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
4
-2.64
0.40
106.40
103.76
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
4
2.16
0.30
108.30
110.46
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
4
3.73
0.50
113.80
117.53
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
4
4.28
0.30
108.30
112.58
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
4
4.39
0.30
108.30
112.69
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
4
2.95
0.30
108.30
111.25
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
4
3.73
0.50
113.80
117.53
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
4
3.90
0.30
108.30
112.20
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
4
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
4
2.46
0.30
108.30
110.76
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
4
4.59
0.50
113.10
117.69
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
4
-2.61
0.40
106.40
103.79
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
5
3.19
0.30
108.30
111.49
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
5
3.15
0.30
108.30
111.45
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
5
3.39
0.50
113.80
117.19
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
5
-2.41
0.40
105.80
103.39
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
5
4.75
0.50
113.10
117.85
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
5
3.17
0.30
108.30
111.47
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
5
2.85
0.30
108.30
111.15
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
5
4.53
0.50
113.10
117.63
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
5
-2.84
0.40
106.40
103.56
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
5
4.09
0.30
108.30
112.39
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
5
4.79
0.50
113.10
117.89
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
5
-3.13
0.40
106.40
103.27
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
5
1.87
0.30
108.30
110.17
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
5
3.10
0.30
108.30
111.40
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
5
4.05
0.50
113.80
117.85
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
5
2.53
0.30
108.30
110.83
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
5
2.90
0.30
108.30
111.20
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
5
4.47
0.50
113.10
117.57
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
5
-2.59
0.40
106.40
103.81
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
5
2.23
0.30
108.30
110.53
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
5
-22.68
1.90
104.00
81.32
B
B
B
O3'
P
O5'
DT
DG
DG
13
14
14
Y
5
-27.51
2.20
105.20
77.69
B
B
B
O3'
P
OP2
DT
DG
DG
13
14
14
Y
5
-40.80
2.20
105.20
64.40
B
B
B
O3'
P
OP1
DT
DG
DG
13
14
14
Y
5
2.78
0.30
108.30
111.08
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
5
4.59
0.50
113.10
117.69
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
5
-2.67
0.40
106.40
103.73
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
5
2.15
0.30
108.30
110.45
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
5
3.77
0.50
113.80
117.57
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
5
4.21
0.30
108.30
112.51
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
5
5.42
0.30
108.30
113.72
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
5
2.95
0.30
108.30
111.25
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
5
3.79
0.50
113.80
117.59
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
5
4.05
0.30
108.30
112.35
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
5
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
5
2.41
0.30
108.30
110.71
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
5
4.49
0.50
113.10
117.59
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
5
-2.61
0.40
106.40
103.79
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
6
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
6
3.36
0.50
113.80
117.16
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
6
4.83
0.50
113.10
117.93
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
6
3.38
0.30
108.30
111.68
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
6
2.19
0.30
108.30
110.49
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
6
4.61
0.50
113.10
117.71
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
6
-2.80
0.40
106.40
103.60
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
6
4.02
0.30
108.30
112.32
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
6
4.89
0.50
113.10
117.99
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
6
-3.21
0.40
106.40
103.19
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
6
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
6
3.10
0.30
108.30
111.40
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
6
3.99
0.50
113.80
117.79
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
6
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
6
2.78
0.30
108.30
111.08
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
6
4.59
0.50
113.10
117.69
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
6
-2.68
0.40
106.40
103.72
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
6
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
6
2.39
0.30
108.30
110.69
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
6
4.54
0.50
113.10
117.64
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
6
-2.62
0.40
106.40
103.78
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
6
3.85
0.50
113.80
117.65
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
6
5.41
0.30
108.30
113.71
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
6
4.19
0.30
108.30
112.49
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
6
3.11
0.30
108.30
111.41
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
6
3.67
0.50
113.80
117.47
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
6
3.96
0.30
108.30
112.26
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
6
2.58
0.30
108.30
110.88
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
6
2.46
0.30
108.30
110.76
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
6
4.59
0.50
113.10
117.69
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
6
-2.60
0.40
106.40
103.80
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
7
2.68
0.30
108.30
110.98
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
7
3.46
0.50
113.80
117.26
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
7
-2.43
0.40
105.80
103.37
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
7
4.81
0.50
113.10
117.91
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
7
3.44
0.30
108.30
111.74
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
7
2.87
0.30
108.30
111.17
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
7
4.56
0.50
113.10
117.66
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
7
-2.85
0.40
106.40
103.55
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
7
3.70
0.30
108.30
112.00
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
7
4.87
0.50
113.10
117.97
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
7
-3.36
0.40
106.40
103.04
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
7
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
7
2.94
0.30
108.30
111.24
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
7
4.15
0.50
113.80
117.95
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
7
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
7
2.95
0.30
108.30
111.25
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
7
4.54
0.50
113.10
117.64
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
7
-2.69
0.40
106.40
103.71
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
7
1.92
0.30
108.30
110.22
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
7
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
7
4.77
0.50
113.10
117.87
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
7
-2.65
0.40
106.40
103.75
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
7
1.98
0.30
108.30
110.28
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
7
3.66
0.50
113.80
117.46
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
7
4.47
0.30
108.30
112.77
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
7
5.42
0.30
108.30
113.72
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
7
2.98
0.30
108.30
111.28
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
7
3.82
0.50
113.80
117.62
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
7
4.07
0.30
108.30
112.37
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
7
2.36
0.30
108.30
110.66
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
7
2.20
0.30
108.30
110.50
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
7
4.54
0.50
113.10
117.64
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
7
-2.67
0.40
106.40
103.73
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
8
3.35
0.30
108.30
111.65
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
8
3.37
0.30
108.30
111.67
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
8
3.37
0.50
113.80
117.17
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
8
-2.41
0.40
105.80
103.39
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
8
4.76
0.50
113.10
117.86
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
8
3.41
0.30
108.30
111.71
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
8
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
8
4.59
0.50
113.10
117.69
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
8
-2.65
0.40
106.40
103.75
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
8
4.04
0.30
108.30
112.34
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
8
4.92
0.50
113.10
118.02
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
8
-3.23
0.40
106.40
103.17
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
8
1.93
0.30
108.30
110.23
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
8
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
8
4.00
0.50
113.80
117.80
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
8
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
8
2.83
0.30
108.30
111.13
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
8
4.48
0.50
113.10
117.58
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
8
-2.68
0.40
106.40
103.72
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
8
2.12
0.30
108.30
110.42
B
B
B
O4'
C1'
N1
DT
DT
DT
13
13
13
N
8
2.64
0.30
108.30
110.94
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
8
4.55
0.50
113.10
117.65
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
8
-2.67
0.40
106.40
103.73
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
8
2.19
0.30
108.30
110.49
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
8
3.79
0.50
113.80
117.59
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
8
4.27
0.30
108.30
112.57
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
8
4.29
0.30
108.30
112.59
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
8
2.96
0.30
108.30
111.26
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
8
3.73
0.50
113.80
117.53
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
8
4.04
0.30
108.30
112.34
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
8
2.31
0.30
108.30
110.61
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
8
2.50
0.30
108.30
110.80
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
8
4.48
0.50
113.10
117.58
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
8
-2.61
0.40
106.40
103.79
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
9
2.97
0.30
108.30
111.27
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
9
3.11
0.30
108.30
111.41
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
9
3.37
0.50
113.80
117.17
A
A
A
N7
C8
N9
DA
DA
DA
2
2
2
N
9
-2.41
0.40
105.80
103.39
A
A
A
C8
N9
C4
DA
DA
DA
2
2
2
N
9
4.84
0.50
113.10
117.94
A
A
A
N7
C8
N9
DG
DG
DG
3
3
3
N
9
3.22
0.30
108.30
111.52
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
9
2.93
0.30
108.30
111.23
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
9
4.46
0.50
113.10
117.56
A
A
A
N7
C8
N9
DG
DG
DG
5
5
5
N
9
-2.76
0.40
106.40
103.64
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
9
3.74
0.30
108.30
112.04
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
9
4.89
0.50
113.10
117.99
A
A
A
N7
C8
N9
DG
DG
DG
7
7
7
N
9
-3.38
0.40
106.40
103.02
A
A
A
C8
N9
C4
DG
DG
DG
7
7
7
N
9
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N1
DT
DT
DT
8
8
8
N
9
2.64
0.30
108.30
110.94
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
9
4.05
0.50
113.80
117.85
A
A
A
N7
C8
N9
DA
DA
DA
10
10
10
N
9
2.76
0.30
108.30
111.06
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
9
2.58
0.30
108.30
110.88
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
9
4.53
0.50
113.10
117.63
B
B
B
N7
C8
N9
DG
DG
DG
12
12
12
N
9
-2.72
0.40
106.40
103.68
B
B
B
C8
N9
C4
DG
DG
DG
12
12
12
N
9
1.99
0.30
108.30
110.29
B
B
B
O4'
C1'
N9
DG
DG
DG
14
14
14
N
9
4.80
0.50
113.10
117.90
B
B
B
N7
C8
N9
DG
DG
DG
14
14
14
N
9
-2.74
0.40
106.40
103.66
B
B
B
C8
N9
C4
DG
DG
DG
14
14
14
N
9
1.94
0.30
108.30
110.24
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
9
3.66
0.50
113.80
117.46
B
B
B
N7
C8
N9
DA
DA
DA
15
15
15
N
9
4.46
0.30
108.30
112.76
B
B
B
O4'
C1'
N1
DC
DC
DC
16
16
16
N
9
4.35
0.30
108.30
112.65
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
9
2.96
0.30
108.30
111.26
B
B
B
O4'
C1'
N9
DA
DA
DA
19
19
19
N
9
3.67
0.50
113.80
117.47
B
B
B
N7
C8
N9
DA
DA
DA
19
19
19
N
9
3.98
0.30
108.30
112.28
B
B
B
O4'
C1'
N1
DC
DC
DC
20
20
20
N
9
2.13
0.30
108.30
110.43
B
B
B
O4'
C1'
N1
DT
DT
DT
21
21
21
N
9
2.23
0.30
108.30
110.53
B
B
B
O4'
C1'
N9
DG
DG
DG
22
22
22
N
9
4.52
0.50
113.10
117.62
B
B
B
N7
C8
N9
DG
DG
DG
22
22
22
N
9
-2.64
0.40
106.40
103.76
B
B
B
C8
N9
C4
DG
DG
DG
22
22
22
N
5
B
B
O3'
P
DT
DG
13
14
0.136
0.012
1.607
1.743
Y
11-MER DNA DUPLEX CONTAINING A 2'-DEOXYARISTEROMYCIN 8-OXO-GUANINE BASE PAIR;
1
N
N
2
N
N
covale
1.615
both
A
DG
5
A
O3'
DG
5
1_555
A
2AR
6
A
P
2AR
6
1_555
covale
1.615
both
A
2AR
6
A
O3'
2AR
6
1_555
A
DG
7
A
P
DG
7
1_555
covale
1.614
both
B
DC
16
B
O3'
DC
5
1_555
B
8OG
17
B
P
8OG
6
1_555
covale
1.612
both
B
8OG
17
B
O3'
8OG
6
1_555
B
DC
18
B
P
DC
7
1_555
hydrog
DC-DT MISPAIR
A
DC
1
A
N4
DC
1
1_555
B
DT
21
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
22
B
N1
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
22
B
O6
DG
11
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
22
B
N2
DG
11
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
DT
21
B
N3
DT
10
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
DT
21
B
O4
DT
10
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
B
DC
20
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
B
DC
20
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
B
DC
20
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
19
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
19
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
18
B
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
18
B
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
18
B
N4
DC
7
1_555
hydrog
DG-DA MISPAIR
A
DG
7
A
O6
DG
7
1_555
B
DA
15
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
DC
16
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
DC
16
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
DC
16
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DT
8
A
N3
DT
8
1_555
B
DA
15
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
8
A
O4
DT
8
1_555
B
DA
15
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
14
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
14
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
14
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N1
DA
10
1_555
B
DT
13
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
10
A
N6
DA
10
1_555
B
DT
13
B
O4
DT
2
1_555
hydrog
DC-DG PAIR
A
DC
11
A
N4
DC
11
1_555
B
DG
12
B
O6
DG
1
1_555
DNA
2'-Deoxyaristeromycin, 8-oxo-Guanine, DNA
1FYI
PDB
1
1FYI
1FYI
PDB
2
1FYI
1
11
1FYI
1
11
1FYI
A
1
1
11
12
22
1FYI
12
22
1FYI
B
2
1
11
1
P 1