0.009872
0.005699
0.000000
0.000000
0.011399
0.000000
0.000000
0.000000
0.007252
0.00000
0.00000
0.00000
Xu, Y.
Tao, X.
Shen, B.
Horng, T.
Medzhitov, R.
Manley, J.L.
Tong, L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90
90
120
101.3
101.3
137.9
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nature
NATUAS
0006
0028-0836
408
111
115
10.1038/35047056
11081518
Structural basis for signal transduction by the Toll/interleukin-1 receptor domains.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
1
CCD
1999-11-12
ADSC QUANTUM 4
CCD
2000-01-20
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
0.909
1.0
X4A
NSLS
0.98
SYNCHROTRON
NSLS BEAMLINE X4A
A1
CHESS
0.909
SYNCHROTRON
CHESS BEAMLINE A1
19081.670
TOLL-LIKE RECEPTOR 1
TIR DOMAIN
1
man
polymer
no
yes
NIPLEELQRNLQFHAFISYSGHDSFWVKNELLPNLEKEG(MSE)QICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPN
FVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSL(MSE)ARRTYLEWPKEKSKRGLFWANLRAAI
NIKLTEQAK
NIPLEELQRNLQFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQS
EWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRTYLEWPKEKSKRGLFWANLRAAINIKLTEQA
K
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
5.35
77.02
VAPOR DIFFUSION, HANGING DROP
8.0
100 mM Tris, 1.2M NaH2PO4/K2HPO4 5 mM DTT, 20% glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 21K
294.0
exptl_crystal_grow
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
repository
Initial release
Version format compliance
Version format compliance
Advisory
Experimental preparation
1
0
2000-11-22
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-31
_exptl_crystal_grow.pdbx_details
_exptl_crystal_grow.temp
RCSB
Y
RCSB
2000-10-03
REL
ASN
625
n
1
ASN
625
A
ILE
626
n
2
ILE
626
A
PRO
627
n
3
PRO
627
A
LEU
628
n
4
LEU
628
A
GLU
629
n
5
GLU
629
A
GLU
630
n
6
GLU
630
A
LEU
631
n
7
LEU
631
A
GLN
632
n
8
GLN
632
A
ARG
633
n
9
ARG
633
A
ASN
634
n
10
ASN
634
A
LEU
635
n
11
LEU
635
A
GLN
636
n
12
GLN
636
A
PHE
637
n
13
PHE
637
A
HIS
638
n
14
HIS
638
A
ALA
639
n
15
ALA
639
A
PHE
640
n
16
PHE
640
A
ILE
641
n
17
ILE
641
A
SER
642
n
18
SER
642
A
TYR
643
n
19
TYR
643
A
SER
644
n
20
SER
644
A
GLY
645
n
21
GLY
645
A
HIS
646
n
22
HIS
646
A
ASP
647
n
23
ASP
647
A
SER
648
n
24
SER
648
A
PHE
649
n
25
PHE
649
A
TRP
650
n
26
TRP
650
A
VAL
651
n
27
VAL
651
A
LYS
652
n
28
LYS
652
A
ASN
653
n
29
ASN
653
A
GLU
654
n
30
GLU
654
A
LEU
655
n
31
LEU
655
A
LEU
656
n
32
LEU
656
A
PRO
657
n
33
PRO
657
A
ASN
658
n
34
ASN
658
A
LEU
659
n
35
LEU
659
A
GLU
660
n
36
GLU
660
A
LYS
661
n
37
LYS
661
A
GLU
662
n
38
GLU
662
A
GLY
663
n
39
GLY
663
A
MSE
664
n
40
MSE
664
A
GLN
665
n
41
GLN
665
A
ILE
666
n
42
ILE
666
A
CYS
667
n
43
CYS
667
A
LEU
668
n
44
LEU
668
A
HIS
669
n
45
HIS
669
A
GLU
670
n
46
GLU
670
A
ARG
671
n
47
ARG
671
A
ASN
672
n
48
ASN
672
A
PHE
673
n
49
PHE
673
A
VAL
674
n
50
VAL
674
A
PRO
675
n
51
PRO
675
A
GLY
676
n
52
GLY
676
A
LYS
677
n
53
LYS
677
A
SER
678
n
54
SER
678
A
ILE
679
n
55
ILE
679
A
VAL
680
n
56
VAL
680
A
GLU
681
n
57
GLU
681
A
ASN
682
n
58
ASN
682
A
ILE
683
n
59
ILE
683
A
ILE
684
n
60
ILE
684
A
THR
685
n
61
THR
685
A
CYS
686
n
62
CYS
686
A
ILE
687
n
63
ILE
687
A
GLU
688
n
64
GLU
688
A
LYS
689
n
65
LYS
689
A
SER
690
n
66
SER
690
A
TYR
691
n
67
TYR
691
A
LYS
692
n
68
LYS
692
A
SER
693
n
69
SER
693
A
ILE
694
n
70
ILE
694
A
PHE
695
n
71
PHE
695
A
VAL
696
n
72
VAL
696
A
LEU
697
n
73
LEU
697
A
SER
698
n
74
SER
698
A
PRO
699
n
75
PRO
699
A
ASN
700
n
76
ASN
700
A
PHE
701
n
77
PHE
701
A
VAL
702
n
78
VAL
702
A
GLN
703
n
79
GLN
703
A
SER
704
n
80
SER
704
A
GLU
705
n
81
GLU
705
A
TRP
706
n
82
TRP
706
A
CYS
707
n
83
CYS
707
A
HIS
708
n
84
HIS
708
A
TYR
709
n
85
TYR
709
A
GLU
710
n
86
GLU
710
A
LEU
711
n
87
LEU
711
A
TYR
712
n
88
TYR
712
A
PHE
713
n
89
PHE
713
A
ALA
714
n
90
ALA
714
A
HIS
715
n
91
HIS
715
A
HIS
716
n
92
HIS
716
A
ASN
717
n
93
ASN
717
A
LEU
718
n
94
LEU
718
A
PHE
719
n
95
PHE
719
A
HIS
720
n
96
HIS
720
A
GLU
721
n
97
GLU
721
A
GLY
722
n
98
GLY
722
A
SER
723
n
99
SER
723
A
ASN
724
n
100
ASN
724
A
SER
725
n
101
SER
725
A
LEU
726
n
102
LEU
726
A
ILE
727
n
103
ILE
727
A
LEU
728
n
104
LEU
728
A
ILE
729
n
105
ILE
729
A
LEU
730
n
106
LEU
730
A
LEU
731
n
107
LEU
731
A
GLU
732
n
108
GLU
732
A
PRO
733
n
109
PRO
733
A
ILE
734
n
110
ILE
734
A
PRO
735
n
111
PRO
735
A
GLN
736
n
112
GLN
736
A
TYR
737
n
113
TYR
737
A
SER
738
n
114
SER
738
A
ILE
739
n
115
ILE
739
A
PRO
740
n
116
PRO
740
A
SER
741
n
117
SER
741
A
SER
742
n
118
SER
742
A
TYR
743
n
119
TYR
743
A
HIS
744
n
120
HIS
744
A
LYS
745
n
121
LYS
745
A
LEU
746
n
122
LEU
746
A
LYS
747
n
123
LYS
747
A
SER
748
n
124
SER
748
A
LEU
749
n
125
LEU
749
A
MSE
750
n
126
MSE
750
A
ALA
751
n
127
ALA
751
A
ARG
752
n
128
ARG
752
A
ARG
753
n
129
ARG
753
A
THR
754
n
130
THR
754
A
TYR
755
n
131
TYR
755
A
LEU
756
n
132
LEU
756
A
GLU
757
n
133
GLU
757
A
TRP
758
n
134
TRP
758
A
PRO
759
n
135
PRO
759
A
LYS
760
n
136
LYS
760
A
GLU
761
n
137
GLU
761
A
LYS
762
n
138
LYS
762
A
SER
763
n
139
SER
763
A
LYS
764
n
140
LYS
764
A
ARG
765
n
141
ARG
765
A
GLY
766
n
142
GLY
766
A
LEU
767
n
143
LEU
767
A
PHE
768
n
144
PHE
768
A
TRP
769
n
145
TRP
769
A
ALA
770
n
146
ALA
770
A
ASN
771
n
147
ASN
771
A
LEU
772
n
148
LEU
772
A
ARG
773
n
149
ARG
773
A
ALA
774
n
150
ALA
774
A
ALA
775
n
151
ALA
775
A
ILE
776
n
152
ILE
776
A
ASN
777
n
153
ASN
777
A
ILE
778
n
154
ILE
778
A
LYS
779
n
155
LYS
779
A
LEU
780
n
156
LEU
780
A
THR
781
n
157
THR
781
A
GLU
782
n
158
GLU
782
A
GLN
783
n
159
GLN
783
A
ALA
784
n
160
ALA
784
A
LYS
785
n
161
LYS
785
A
author_defined_assembly
1
monomeric
A
MSE
664
SELENOMETHIONINE
A
MSE
40
MET
A
MSE
750
SELENOMETHIONINE
A
MSE
126
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
667
A
N
CYS
43
A
O
ALA
639
A
O
ALA
15
A
O
PHE
637
A
O
PHE
13
A
N
TYR
691
A
N
TYR
67
A
O
SER
693
A
O
SER
69
A
N
ILE
727
A
N
ILE
103
A
N
LEU
730
A
N
LEU
106
A
O
LEU
756
A
O
LEU
132
1
A
ILE
626
-35.99
127.24
1
A
LEU
628
-39.43
-30.01
1
A
GLU
630
-56.68
16.59
1
A
GLN
632
-47.85
-70.81
1
A
ASN
634
-105.00
61.72
1
A
HIS
669
-51.82
-6.52
1
A
ASN
672
-93.65
32.96
1
A
LEU
718
-133.25
-33.96
1
A
HIS
720
-58.97
174.15
1
A
SER
723
-65.99
-179.01
1
A
ARG
752
-52.19
-9.31
1
A
ARG
753
42.28
72.93
1
A
ALA
784
55.91
-98.74
0.296
0.254
0.26
0.254
2.9
20
600
9700
8496
7.5%
1
1
2
Engh & Huber
2.9
20
0
1342
0
0
1342
0.008
1.4
35
2.9
40
1FYV
9700
9374
.5
1
0.048
1
40
5
97
0.17
2.9
3.0
3
91
data reduction
DENZO
data scaling
SCALEPACK
phasing
MADSYS
refinement
CNS
TOLL-LIKE RECEPTOR 1
CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR1
1
N
N
A
SER
644
A
SER
20
HELX_P
A
HIS
646
A
HIS
22
5
1
3
A
ASP
647
A
ASP
23
HELX_P
A
GLU
654
A
GLU
30
1
2
8
A
GLU
654
A
GLU
30
HELX_P
A
LYS
661
A
LYS
37
1
3
8
A
SER
678
A
SER
54
HELX_P
A
LYS
689
A
LYS
65
1
4
12
A
SER
698
A
SER
74
HELX_P
A
GLU
705
A
GLU
81
1
5
8
A
TRP
706
A
TRP
82
HELX_P
A
PHE
713
A
PHE
89
1
6
8
A
PRO
735
A
PRO
111
HELX_P
A
ILE
739
A
ILE
115
5
7
5
A
TYR
743
A
TYR
119
HELX_P
A
ARG
752
A
ARG
128
1
8
10
A
GLU
761
A
GLU
137
HELX_P
A
ARG
765
A
ARG
141
5
9
5
A
GLY
766
A
GLY
142
HELX_P
A
ILE
778
A
ILE
154
1
10
13
disulf
2.006
A
CYS
667
A
SG
CYS
43
1_555
A
CYS
686
A
SG
CYS
62
1_555
covale
1.322
A
GLY
663
A
C
GLY
39
1_555
A
MSE
664
A
N
MSE
40
1_555
covale
1.329
A
MSE
664
A
C
MSE
40
1_555
A
GLN
665
A
N
GLN
41
1_555
covale
1.323
A
LEU
749
A
C
LEU
125
1_555
A
MSE
750
A
N
MSE
126
1_555
covale
1.330
A
MSE
750
A
C
MSE
126
1_555
A
ALA
751
A
N
ALA
127
1_555
SIGNALING PROTEIN
beta-alpha-beta fold parallel beta sheet, SIGNALING PROTEIN
TLR1_HUMAN
UNP
1
625
Q15399
NIPLEELQRNLQFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQS
EWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRTYLEWPKEKSKRGLFWANLRAAINIKLTEQA
K
625
785
1FYV
625
785
Q15399
A
1
1
161
1
MET
MODIFIED RESIDUE
MSE
664
1FYV
A
Q15399
UNP
664
40
1
MET
MODIFIED RESIDUE
MSE
750
1FYV
A
Q15399
UNP
750
126
5
parallel
parallel
parallel
parallel
A
ILE
666
A
ILE
42
A
CYS
667
A
CYS
43
A
PHE
637
A
PHE
13
A
SER
642
A
SER
18
A
SER
690
A
SER
66
A
LEU
697
A
LEU
73
A
LEU
726
A
LEU
102
A
LEU
730
A
LEU
106
A
LEU
756
A
LEU
132
A
GLU
757
A
GLU
133
181
P 64 2 2