0.008251
0.004764
0.000000
0.000000
0.009527
0.000000
0.000000
0.000000
0.010917
0.00000
0.00000
0.00000
Xu, Y.
Tao, X.
Shen, B.
Horng, T.
Medzhitov, R.
Manley, J.L.
Tong, L.
Northeast Structural Genomics Consortium (NESG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90
90
120
121.2
121.2
91.6
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H12 As N O2 S
225.141
n
S-(DIMETHYLARSENIC)CYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nature
NATUAS
0006
0028-0836
408
111
115
10.1038/35047056
11081518
Structural basis for signal transduction by the Toll/interleukin-1 receptor domains.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2000-03-16
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.98
1.0
32-ID
APS
0.98
SYNCHROTRON
APS BEAMLINE 32-ID
18455.197
TOLL-LIKE RECEPTOR 2
TIR DOMAIN
1
man
polymer
no
yes
SRNI(CAS)YDAFVSYSERDAYWVENL(MSE)VQELENFNPPFKL(CAS)LHKRDFIPGKWIIDNIIDSIEKSHKTVFVL
SENFVKSEW(CAS)KYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRF(CAS)KLRKI(MSE)NTKTYLEWP(MSE)D
EAQREGFWVNLRAAIKS
SRNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKY
ELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS
A
HC02
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
1
5.26
76.62
VAPOR DIFFUSION, HANGING DROP
6.8
100 mM cacodylate, 10 % PEG 8000, 20 % DMSO, 200 mM MgCl2, 5 mM DTT, pH 6.8, VAPOR DIFFUSION, HANGING DROP,
temperature 4K
277.0
Northeast Structural Genomics Consortium
NESG
PSI, Protein Structure Initiative
exptl_crystal_grow
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Advisory
Experimental preparation
1
0
2000-11-22
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-31
_exptl_crystal_grow.pdbx_details
_exptl_crystal_grow.temp
Y
RCSB
Y
RCSB
2000-10-03
REL
SER
636
n
1
SER
636
A
ARG
637
n
2
ARG
637
A
ASN
638
n
3
ASN
638
A
ILE
639
n
4
ILE
639
A
CAS
640
n
5
CAS
640
A
TYR
641
n
6
TYR
641
A
ASP
642
n
7
ASP
642
A
ALA
643
n
8
ALA
643
A
PHE
644
n
9
PHE
644
A
VAL
645
n
10
VAL
645
A
SER
646
n
11
SER
646
A
TYR
647
n
12
TYR
647
A
SER
648
n
13
SER
648
A
GLU
649
n
14
GLU
649
A
ARG
650
n
15
ARG
650
A
ASP
651
n
16
ASP
651
A
ALA
652
n
17
ALA
652
A
TYR
653
n
18
TYR
653
A
TRP
654
n
19
TRP
654
A
VAL
655
n
20
VAL
655
A
GLU
656
n
21
GLU
656
A
ASN
657
n
22
ASN
657
A
LEU
658
n
23
LEU
658
A
MSE
659
n
24
MSE
659
A
VAL
660
n
25
VAL
660
A
GLN
661
n
26
GLN
661
A
GLU
662
n
27
GLU
662
A
LEU
663
n
28
LEU
663
A
GLU
664
n
29
GLU
664
A
ASN
665
n
30
ASN
665
A
PHE
666
n
31
PHE
666
A
ASN
667
n
32
ASN
667
A
PRO
668
n
33
PRO
668
A
PRO
669
n
34
PRO
669
A
PHE
670
n
35
PHE
670
A
LYS
671
n
36
LYS
671
A
LEU
672
n
37
LEU
672
A
CAS
673
n
38
CAS
673
A
LEU
674
n
39
LEU
674
A
HIS
675
n
40
HIS
675
A
LYS
676
n
41
LYS
676
A
ARG
677
n
42
ARG
677
A
ASP
678
n
43
ASP
678
A
PHE
679
n
44
PHE
679
A
ILE
680
n
45
ILE
680
A
PRO
681
n
46
PRO
681
A
GLY
682
n
47
GLY
682
A
LYS
683
n
48
LYS
683
A
TRP
684
n
49
TRP
684
A
ILE
685
n
50
ILE
685
A
ILE
686
n
51
ILE
686
A
ASP
687
n
52
ASP
687
A
ASN
688
n
53
ASN
688
A
ILE
689
n
54
ILE
689
A
ILE
690
n
55
ILE
690
A
ASP
691
n
56
ASP
691
A
SER
692
n
57
SER
692
A
ILE
693
n
58
ILE
693
A
GLU
694
n
59
GLU
694
A
LYS
695
n
60
LYS
695
A
SER
696
n
61
SER
696
A
HIS
697
n
62
HIS
697
A
LYS
698
n
63
LYS
698
A
THR
699
n
64
THR
699
A
VAL
700
n
65
VAL
700
A
PHE
701
n
66
PHE
701
A
VAL
702
n
67
VAL
702
A
LEU
703
n
68
LEU
703
A
SER
704
n
69
SER
704
A
GLU
705
n
70
GLU
705
A
ASN
706
n
71
ASN
706
A
PHE
707
n
72
PHE
707
A
VAL
708
n
73
VAL
708
A
LYS
709
n
74
LYS
709
A
SER
710
n
75
SER
710
A
GLU
711
n
76
GLU
711
A
TRP
712
n
77
TRP
712
A
CAS
713
n
78
CAS
713
A
LYS
714
n
79
LYS
714
A
TYR
715
n
80
TYR
715
A
GLU
716
n
81
GLU
716
A
LEU
717
n
82
LEU
717
A
ASP
718
n
83
ASP
718
A
PHE
719
n
84
PHE
719
A
SER
720
n
85
SER
720
A
HIS
721
n
86
HIS
721
A
PHE
722
n
87
PHE
722
A
ARG
723
n
88
ARG
723
A
LEU
724
n
89
LEU
724
A
PHE
725
n
90
PHE
725
A
ASP
726
n
91
ASP
726
A
GLU
727
n
92
GLU
727
A
ASN
728
n
93
ASN
728
A
ASN
729
n
94
ASN
729
A
ASP
730
n
95
ASP
730
A
ALA
731
n
96
ALA
731
A
ALA
732
n
97
ALA
732
A
ILE
733
n
98
ILE
733
A
LEU
734
n
99
LEU
734
A
ILE
735
n
100
ILE
735
A
LEU
736
n
101
LEU
736
A
LEU
737
n
102
LEU
737
A
GLU
738
n
103
GLU
738
A
PRO
739
n
104
PRO
739
A
ILE
740
n
105
ILE
740
A
GLU
741
n
106
GLU
741
A
LYS
742
n
107
LYS
742
A
LYS
743
n
108
LYS
743
A
ALA
744
n
109
ALA
744
A
ILE
745
n
110
ILE
745
A
PRO
746
n
111
PRO
746
A
GLN
747
n
112
GLN
747
A
ARG
748
n
113
ARG
748
A
PHE
749
n
114
PHE
749
A
CAS
750
n
115
CAS
750
A
LYS
751
n
116
LYS
751
A
LEU
752
n
117
LEU
752
A
ARG
753
n
118
ARG
753
A
LYS
754
n
119
LYS
754
A
ILE
755
n
120
ILE
755
A
MSE
756
n
121
MSE
756
A
ASN
757
n
122
ASN
757
A
THR
758
n
123
THR
758
A
LYS
759
n
124
LYS
759
A
THR
760
n
125
THR
760
A
TYR
761
n
126
TYR
761
A
LEU
762
n
127
LEU
762
A
GLU
763
n
128
GLU
763
A
TRP
764
n
129
TRP
764
A
PRO
765
n
130
PRO
765
A
MSE
766
n
131
MSE
766
A
ASP
767
n
132
ASP
767
A
GLU
768
n
133
GLU
768
A
ALA
769
n
134
ALA
769
A
GLN
770
n
135
GLN
770
A
ARG
771
n
136
ARG
771
A
GLU
772
n
137
GLU
772
A
GLY
773
n
138
GLY
773
A
PHE
774
n
139
PHE
774
A
TRP
775
n
140
TRP
775
A
VAL
776
n
141
VAL
776
A
ASN
777
n
142
ASN
777
A
LEU
778
n
143
LEU
778
A
ARG
779
n
144
ARG
779
A
ALA
780
n
145
ALA
780
A
ALA
781
n
146
ALA
781
A
ILE
782
n
147
ILE
782
A
LYS
783
n
148
LYS
783
A
SER
784
n
149
SER
784
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA,PQS
2
dimeric
2190
-21
17130
A
CAS
640
S-(DIMETHYLARSENIC)CYSTEINE
A
CAS
5
CYS
A
MSE
659
SELENOMETHIONINE
A
MSE
24
MET
A
CAS
673
S-(DIMETHYLARSENIC)CYSTEINE
A
CAS
38
CYS
A
CAS
713
S-(DIMETHYLARSENIC)CYSTEINE
A
CAS
78
CYS
A
CAS
750
S-(DIMETHYLARSENIC)CYSTEINE
A
CAS
115
CYS
A
MSE
756
SELENOMETHIONINE
A
MSE
121
MET
A
MSE
766
SELENOMETHIONINE
A
MSE
131
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_675
-x+1,-y+2,z
crystal symmetry operation
0.0000000000
209.9245578773
0.0000000000
A
N
PHE
644
A
N
PHE
9
A
O
LYS
698
A
O
LYS
63
A
O
THR
699
A
O
THR
64
A
N
ILE
733
A
N
ILE
98
A
N
LEU
736
A
N
LEU
101
A
O
LEU
762
A
O
LEU
127
1
A
CE1
CAS
640
A
CE1
CAS
5
1
Y
1
A
CE2
CAS
640
A
CE2
CAS
5
1
Y
1
A
CE1
CAS
673
A
CE1
CAS
38
1
Y
1
A
CE2
CAS
673
A
CE2
CAS
38
1
Y
1
A
CE1
CAS
713
A
CE1
CAS
78
1
Y
1
A
CE2
CAS
713
A
CE2
CAS
78
1
Y
1
A
CE1
CAS
750
A
CE1
CAS
115
1
Y
1
A
CE2
CAS
750
A
CE2
CAS
115
1
Y
1
A
ASN
638
-167.46
34.14
1
A
ILE
639
-88.18
47.82
1
A
ASN
657
-125.67
-76.78
1
A
LEU
663
-124.96
-58.13
1
A
LYS
676
-105.90
40.18
1
A
ARG
677
-151.47
-24.24
1
A
LYS
683
-32.41
148.15
1
A
ILE
685
-65.88
-79.87
1
A
ILE
689
-52.57
-78.25
1
A
GLU
716
-71.95
-75.10
1
A
SER
720
-2.82
74.57
1
A
PHE
725
67.91
137.92
1
A
ASP
726
-50.23
-9.94
1
A
ASP
730
71.36
-28.45
1
A
ALA
731
77.03
171.00
1
A
GLU
741
-62.98
99.93
1
A
PRO
746
-6.51
-107.08
1
A
GLN
747
162.88
-27.59
1
A
LYS
759
35.37
56.29
1
A
TYR
761
164.32
154.90
1
A
TRP
764
-54.55
106.24
0.2740000
0.2440000
0.2600000
0.2440000
3.0
20
550
7500
7451
7.5%
1
1
2
Engh & Huber
3.0
20
0
1266
0
0
1266
0.007
1.4
35
3.0
40
1FYW
7500
7380
0.5
1
0.0550000
1
32
7
99
0.2390000
3.0
3.11
1
4
97
phasing
COMO
+ MADSYS
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
MADSYS
TOLL-LIKE RECEPTOR 2
CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR2
1
N
N
A
ASP
651
A
ASP
16
HELX_P
A
ASN
657
A
ASN
22
1
1
7
A
ASN
657
A
ASN
22
HELX_P
A
GLU
664
A
GLU
29
1
2
8
A
TRP
684
A
TRP
49
HELX_P
A
SER
696
A
SER
61
1
3
13
A
SER
704
A
SER
69
HELX_P
A
TRP
712
A
TRP
77
1
4
9
A
PHE
725
A
PHE
90
HELX_P
A
ASN
729
A
ASN
94
5
5
5
A
GLU
741
A
GLU
106
HELX_P
A
ILE
745
A
ILE
110
5
6
5
A
LYS
751
A
LYS
116
HELX_P
A
LYS
759
A
LYS
124
1
7
9
A
ASP
767
A
ASP
132
HELX_P
A
ALA
769
A
ALA
134
5
8
3
A
GLN
770
A
GLN
135
HELX_P
A
LYS
783
A
LYS
148
1
9
14
covale
1.331
A
ILE
639
A
C
ILE
4
1_555
A
CAS
640
A
N
CAS
5
1_555
covale
1.327
A
CAS
640
A
C
CAS
5
1_555
A
TYR
641
A
N
TYR
6
1_555
covale
1.329
A
LEU
658
A
C
LEU
23
1_555
A
MSE
659
A
N
MSE
24
1_555
covale
1.315
A
MSE
659
A
C
MSE
24
1_555
A
VAL
660
A
N
VAL
25
1_555
covale
1.329
A
LEU
672
A
C
LEU
37
1_555
A
CAS
673
A
N
CAS
38
1_555
covale
1.325
A
CAS
673
A
C
CAS
38
1_555
A
LEU
674
A
N
LEU
39
1_555
covale
1.336
A
TRP
712
A
C
TRP
77
1_555
A
CAS
713
A
N
CAS
78
1_555
covale
1.322
A
CAS
713
A
C
CAS
78
1_555
A
LYS
714
A
N
LYS
79
1_555
covale
1.329
A
PHE
749
A
C
PHE
114
1_555
A
CAS
750
A
N
CAS
115
1_555
covale
1.327
A
CAS
750
A
C
CAS
115
1_555
A
LYS
751
A
N
LYS
116
1_555
covale
1.324
A
ILE
755
A
C
ILE
120
1_555
A
MSE
756
A
N
MSE
121
1_555
covale
1.331
A
MSE
756
A
C
MSE
121
1_555
A
ASN
757
A
N
ASN
122
1_555
covale
1.328
A
PRO
765
A
C
PRO
130
1_555
A
MSE
766
A
N
MSE
131
1_555
covale
1.325
A
MSE
766
A
C
MSE
131
1_555
A
ASP
767
A
N
ASP
132
1_555
SIGNALING PROTEIN
beta-alpha-beta fold parallel beta sheet, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, SIGNALING PROTEIN
A
ASN
667
A
ASN
32
1
A
PRO
668
A
PRO
33
0.04
TLR2_HUMAN
UNP
1
636
O60603
SRNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKY
ELDFSHFRLFEENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS
636
784
1FYW
636
784
O60603
A
1
1
149
1
CYS
MODIFIED RESIDUE
CAS
640
1FYW
A
O60603
UNP
640
5
1
MET
MODIFIED RESIDUE
MSE
659
1FYW
A
O60603
UNP
659
24
1
CYS
MODIFIED RESIDUE
CAS
673
1FYW
A
O60603
UNP
673
38
1
CYS
MODIFIED RESIDUE
CAS
713
1FYW
A
O60603
UNP
713
78
1
GLU
MODIFIED RESIDUE
ASP
726
1FYW
A
O60603
UNP
726
91
1
CYS
MODIFIED RESIDUE
CAS
750
1FYW
A
O60603
UNP
750
115
1
MET
MODIFIED RESIDUE
MSE
756
1FYW
A
O60603
UNP
756
121
1
MET
MODIFIED RESIDUE
MSE
766
1FYW
A
O60603
UNP
766
131
4
parallel
parallel
parallel
A
ALA
643
A
ALA
8
A
SER
646
A
SER
11
A
LYS
698
A
LYS
63
A
LEU
703
A
LEU
68
A
ILE
733
A
ILE
98
A
LEU
736
A
LEU
101
A
LEU
762
A
LEU
127
A
GLU
763
A
GLU
128
180
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