0.008251 0.004764 0.000000 0.000000 0.009527 0.000000 0.000000 0.000000 0.010917 0.00000 0.00000 0.00000 Xu, Y. Tao, X. Shen, B. Horng, T. Medzhitov, R. Manley, J.L. Tong, L. Northeast Structural Genomics Consortium (NESG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90 90 120 121.2 121.2 91.6 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H12 As N O2 S 225.141 n S-(DIMETHYLARSENIC)CYSTEINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 408 111 115 10.1038/35047056 11081518 Structural basis for signal transduction by the Toll/interleukin-1 receptor domains. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-03-16 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.98 1.0 32-ID APS 0.98 SYNCHROTRON APS BEAMLINE 32-ID 18455.197 TOLL-LIKE RECEPTOR 2 TIR DOMAIN 1 man polymer no yes SRNI(CAS)YDAFVSYSERDAYWVENL(MSE)VQELENFNPPFKL(CAS)LHKRDFIPGKWIIDNIIDSIEKSHKTVFVL SENFVKSEW(CAS)KYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRF(CAS)KLRKI(MSE)NTKTYLEWP(MSE)D EAQREGFWVNLRAAIKS SRNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKY ELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS A HC02 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 1 5.26 76.62 VAPOR DIFFUSION, HANGING DROP 6.8 100 mM cacodylate, 10 % PEG 8000, 20 % DMSO, 200 mM MgCl2, 5 mM DTT, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 4K 277.0 Northeast Structural Genomics Consortium NESG PSI, Protein Structure Initiative exptl_crystal_grow pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues repository Initial release Version format compliance Derived calculations Version format compliance Advisory Experimental preparation 1 0 2000-11-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-01-31 _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp Y RCSB Y RCSB 2000-10-03 REL SER 636 n 1 SER 636 A ARG 637 n 2 ARG 637 A ASN 638 n 3 ASN 638 A ILE 639 n 4 ILE 639 A CAS 640 n 5 CAS 640 A TYR 641 n 6 TYR 641 A ASP 642 n 7 ASP 642 A ALA 643 n 8 ALA 643 A PHE 644 n 9 PHE 644 A VAL 645 n 10 VAL 645 A SER 646 n 11 SER 646 A TYR 647 n 12 TYR 647 A SER 648 n 13 SER 648 A GLU 649 n 14 GLU 649 A ARG 650 n 15 ARG 650 A ASP 651 n 16 ASP 651 A ALA 652 n 17 ALA 652 A TYR 653 n 18 TYR 653 A TRP 654 n 19 TRP 654 A VAL 655 n 20 VAL 655 A GLU 656 n 21 GLU 656 A ASN 657 n 22 ASN 657 A LEU 658 n 23 LEU 658 A MSE 659 n 24 MSE 659 A VAL 660 n 25 VAL 660 A GLN 661 n 26 GLN 661 A GLU 662 n 27 GLU 662 A LEU 663 n 28 LEU 663 A GLU 664 n 29 GLU 664 A ASN 665 n 30 ASN 665 A PHE 666 n 31 PHE 666 A ASN 667 n 32 ASN 667 A PRO 668 n 33 PRO 668 A PRO 669 n 34 PRO 669 A PHE 670 n 35 PHE 670 A LYS 671 n 36 LYS 671 A LEU 672 n 37 LEU 672 A CAS 673 n 38 CAS 673 A LEU 674 n 39 LEU 674 A HIS 675 n 40 HIS 675 A LYS 676 n 41 LYS 676 A ARG 677 n 42 ARG 677 A ASP 678 n 43 ASP 678 A PHE 679 n 44 PHE 679 A ILE 680 n 45 ILE 680 A PRO 681 n 46 PRO 681 A GLY 682 n 47 GLY 682 A LYS 683 n 48 LYS 683 A TRP 684 n 49 TRP 684 A ILE 685 n 50 ILE 685 A ILE 686 n 51 ILE 686 A ASP 687 n 52 ASP 687 A ASN 688 n 53 ASN 688 A ILE 689 n 54 ILE 689 A ILE 690 n 55 ILE 690 A ASP 691 n 56 ASP 691 A SER 692 n 57 SER 692 A ILE 693 n 58 ILE 693 A GLU 694 n 59 GLU 694 A LYS 695 n 60 LYS 695 A SER 696 n 61 SER 696 A HIS 697 n 62 HIS 697 A LYS 698 n 63 LYS 698 A THR 699 n 64 THR 699 A VAL 700 n 65 VAL 700 A PHE 701 n 66 PHE 701 A VAL 702 n 67 VAL 702 A LEU 703 n 68 LEU 703 A SER 704 n 69 SER 704 A GLU 705 n 70 GLU 705 A ASN 706 n 71 ASN 706 A PHE 707 n 72 PHE 707 A VAL 708 n 73 VAL 708 A LYS 709 n 74 LYS 709 A SER 710 n 75 SER 710 A GLU 711 n 76 GLU 711 A TRP 712 n 77 TRP 712 A CAS 713 n 78 CAS 713 A LYS 714 n 79 LYS 714 A TYR 715 n 80 TYR 715 A GLU 716 n 81 GLU 716 A LEU 717 n 82 LEU 717 A ASP 718 n 83 ASP 718 A PHE 719 n 84 PHE 719 A SER 720 n 85 SER 720 A HIS 721 n 86 HIS 721 A PHE 722 n 87 PHE 722 A ARG 723 n 88 ARG 723 A LEU 724 n 89 LEU 724 A PHE 725 n 90 PHE 725 A ASP 726 n 91 ASP 726 A GLU 727 n 92 GLU 727 A ASN 728 n 93 ASN 728 A ASN 729 n 94 ASN 729 A ASP 730 n 95 ASP 730 A ALA 731 n 96 ALA 731 A ALA 732 n 97 ALA 732 A ILE 733 n 98 ILE 733 A LEU 734 n 99 LEU 734 A ILE 735 n 100 ILE 735 A LEU 736 n 101 LEU 736 A LEU 737 n 102 LEU 737 A GLU 738 n 103 GLU 738 A PRO 739 n 104 PRO 739 A ILE 740 n 105 ILE 740 A GLU 741 n 106 GLU 741 A LYS 742 n 107 LYS 742 A LYS 743 n 108 LYS 743 A ALA 744 n 109 ALA 744 A ILE 745 n 110 ILE 745 A PRO 746 n 111 PRO 746 A GLN 747 n 112 GLN 747 A ARG 748 n 113 ARG 748 A PHE 749 n 114 PHE 749 A CAS 750 n 115 CAS 750 A LYS 751 n 116 LYS 751 A LEU 752 n 117 LEU 752 A ARG 753 n 118 ARG 753 A LYS 754 n 119 LYS 754 A ILE 755 n 120 ILE 755 A MSE 756 n 121 MSE 756 A ASN 757 n 122 ASN 757 A THR 758 n 123 THR 758 A LYS 759 n 124 LYS 759 A THR 760 n 125 THR 760 A TYR 761 n 126 TYR 761 A LEU 762 n 127 LEU 762 A GLU 763 n 128 GLU 763 A TRP 764 n 129 TRP 764 A PRO 765 n 130 PRO 765 A MSE 766 n 131 MSE 766 A ASP 767 n 132 ASP 767 A GLU 768 n 133 GLU 768 A ALA 769 n 134 ALA 769 A GLN 770 n 135 GLN 770 A ARG 771 n 136 ARG 771 A GLU 772 n 137 GLU 772 A GLY 773 n 138 GLY 773 A PHE 774 n 139 PHE 774 A TRP 775 n 140 TRP 775 A VAL 776 n 141 VAL 776 A ASN 777 n 142 ASN 777 A LEU 778 n 143 LEU 778 A ARG 779 n 144 ARG 779 A ALA 780 n 145 ALA 780 A ALA 781 n 146 ALA 781 A ILE 782 n 147 ILE 782 A LYS 783 n 148 LYS 783 A SER 784 n 149 SER 784 A author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 2 dimeric 2190 -21 17130 A CAS 640 S-(DIMETHYLARSENIC)CYSTEINE A CAS 5 CYS A MSE 659 SELENOMETHIONINE A MSE 24 MET A CAS 673 S-(DIMETHYLARSENIC)CYSTEINE A CAS 38 CYS A CAS 713 S-(DIMETHYLARSENIC)CYSTEINE A CAS 78 CYS A CAS 750 S-(DIMETHYLARSENIC)CYSTEINE A CAS 115 CYS A MSE 756 SELENOMETHIONINE A MSE 121 MET A MSE 766 SELENOMETHIONINE A MSE 131 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_675 -x+1,-y+2,z crystal symmetry operation 0.0000000000 209.9245578773 0.0000000000 A N PHE 644 A N PHE 9 A O LYS 698 A O LYS 63 A O THR 699 A O THR 64 A N ILE 733 A N ILE 98 A N LEU 736 A N LEU 101 A O LEU 762 A O LEU 127 1 A CE1 CAS 640 A CE1 CAS 5 1 Y 1 A CE2 CAS 640 A CE2 CAS 5 1 Y 1 A CE1 CAS 673 A CE1 CAS 38 1 Y 1 A CE2 CAS 673 A CE2 CAS 38 1 Y 1 A CE1 CAS 713 A CE1 CAS 78 1 Y 1 A CE2 CAS 713 A CE2 CAS 78 1 Y 1 A CE1 CAS 750 A CE1 CAS 115 1 Y 1 A CE2 CAS 750 A CE2 CAS 115 1 Y 1 A ASN 638 -167.46 34.14 1 A ILE 639 -88.18 47.82 1 A ASN 657 -125.67 -76.78 1 A LEU 663 -124.96 -58.13 1 A LYS 676 -105.90 40.18 1 A ARG 677 -151.47 -24.24 1 A LYS 683 -32.41 148.15 1 A ILE 685 -65.88 -79.87 1 A ILE 689 -52.57 -78.25 1 A GLU 716 -71.95 -75.10 1 A SER 720 -2.82 74.57 1 A PHE 725 67.91 137.92 1 A ASP 726 -50.23 -9.94 1 A ASP 730 71.36 -28.45 1 A ALA 731 77.03 171.00 1 A GLU 741 -62.98 99.93 1 A PRO 746 -6.51 -107.08 1 A GLN 747 162.88 -27.59 1 A LYS 759 35.37 56.29 1 A TYR 761 164.32 154.90 1 A TRP 764 -54.55 106.24 0.2740000 0.2440000 0.2600000 0.2440000 3.0 20 550 7500 7451 7.5% 1 1 2 Engh & Huber 3.0 20 0 1266 0 0 1266 0.007 1.4 35 3.0 40 1FYW 7500 7380 0.5 1 0.0550000 1 32 7 99 0.2390000 3.0 3.11 1 4 97 phasing COMO + MADSYS refinement CNS data reduction DENZO data scaling SCALEPACK phasing MADSYS TOLL-LIKE RECEPTOR 2 CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR2 1 N N A ASP 651 A ASP 16 HELX_P A ASN 657 A ASN 22 1 1 7 A ASN 657 A ASN 22 HELX_P A GLU 664 A GLU 29 1 2 8 A TRP 684 A TRP 49 HELX_P A SER 696 A SER 61 1 3 13 A SER 704 A SER 69 HELX_P A TRP 712 A TRP 77 1 4 9 A PHE 725 A PHE 90 HELX_P A ASN 729 A ASN 94 5 5 5 A GLU 741 A GLU 106 HELX_P A ILE 745 A ILE 110 5 6 5 A LYS 751 A LYS 116 HELX_P A LYS 759 A LYS 124 1 7 9 A ASP 767 A ASP 132 HELX_P A ALA 769 A ALA 134 5 8 3 A GLN 770 A GLN 135 HELX_P A LYS 783 A LYS 148 1 9 14 covale 1.331 A ILE 639 A C ILE 4 1_555 A CAS 640 A N CAS 5 1_555 covale 1.327 A CAS 640 A C CAS 5 1_555 A TYR 641 A N TYR 6 1_555 covale 1.329 A LEU 658 A C LEU 23 1_555 A MSE 659 A N MSE 24 1_555 covale 1.315 A MSE 659 A C MSE 24 1_555 A VAL 660 A N VAL 25 1_555 covale 1.329 A LEU 672 A C LEU 37 1_555 A CAS 673 A N CAS 38 1_555 covale 1.325 A CAS 673 A C CAS 38 1_555 A LEU 674 A N LEU 39 1_555 covale 1.336 A TRP 712 A C TRP 77 1_555 A CAS 713 A N CAS 78 1_555 covale 1.322 A CAS 713 A C CAS 78 1_555 A LYS 714 A N LYS 79 1_555 covale 1.329 A PHE 749 A C PHE 114 1_555 A CAS 750 A N CAS 115 1_555 covale 1.327 A CAS 750 A C CAS 115 1_555 A LYS 751 A N LYS 116 1_555 covale 1.324 A ILE 755 A C ILE 120 1_555 A MSE 756 A N MSE 121 1_555 covale 1.331 A MSE 756 A C MSE 121 1_555 A ASN 757 A N ASN 122 1_555 covale 1.328 A PRO 765 A C PRO 130 1_555 A MSE 766 A N MSE 131 1_555 covale 1.325 A MSE 766 A C MSE 131 1_555 A ASP 767 A N ASP 132 1_555 SIGNALING PROTEIN beta-alpha-beta fold parallel beta sheet, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, SIGNALING PROTEIN A ASN 667 A ASN 32 1 A PRO 668 A PRO 33 0.04 TLR2_HUMAN UNP 1 636 O60603 SRNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKY ELDFSHFRLFEENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS 636 784 1FYW 636 784 O60603 A 1 1 149 1 CYS MODIFIED RESIDUE CAS 640 1FYW A O60603 UNP 640 5 1 MET MODIFIED RESIDUE MSE 659 1FYW A O60603 UNP 659 24 1 CYS MODIFIED RESIDUE CAS 673 1FYW A O60603 UNP 673 38 1 CYS MODIFIED RESIDUE CAS 713 1FYW A O60603 UNP 713 78 1 GLU MODIFIED RESIDUE ASP 726 1FYW A O60603 UNP 726 91 1 CYS MODIFIED RESIDUE CAS 750 1FYW A O60603 UNP 750 115 1 MET MODIFIED RESIDUE MSE 756 1FYW A O60603 UNP 756 121 1 MET MODIFIED RESIDUE MSE 766 1FYW A O60603 UNP 766 131 4 parallel parallel parallel A ALA 643 A ALA 8 A SER 646 A SER 11 A LYS 698 A LYS 63 A LEU 703 A LEU 68 A ILE 733 A ILE 98 A LEU 736 A LEU 101 A LEU 762 A LEU 127 A GLU 763 A GLU 128 180 P 62 2 2