0.008190 0.004729 0.000000 0.000000 0.009457 0.000000 0.000000 0.000000 0.010858 0.00000 0.00000 0.00000 Xu, Y. Tao, X. Shen, B. Horng, T. Medzhitov, R. Manley, J.L. Tong, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90 90 120 122.1 122.1 92.1 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H12 As N O2 S 225.141 n S-(DIMETHYLARSENIC)CYSTEINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 408 111 115 10.1038/35047056 11081518 Structural basis for signal transduction by the Toll/interleukin-1 receptor domains. 2000 10.2210/pdb1fyx/pdb pdb_00001fyx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-03-16 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.98 1.0 32-ID APS 0.98 SYNCHROTRON APS BEAMLINE 32-ID 18355.545 TOLL-LIKE RECEPTOR 2 TIR DOMAIN P681H 1 man polymer no yes SRNI(CAS)YDAFVSYSERDAYWVENLMVQELENFNPPFKL(CAS)LHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENF VKSEW(CAS)KYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRF(CAS)KLRKIMNTKTYLEWPMDEAQREGFWVNLR AAIKS SRNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKY ELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample 9606 Homo sapiens 562 Escherichia coli 1 5.40 77.22 VAPOR DIFFUSION, HANGING DROP 6.8 100 mM cacodylate, 10 % PEG 8000, 20 % DMSO, 200 mM MgCl2, 5 mM DTT, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 4K 277.0 pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues software exptl_crystal_grow database_2 pdbx_unobs_or_zero_occ_atoms pdbx_unobs_or_zero_occ_residues struct_conn struct_ref_seq_dif repository Initial release Version format compliance Derived calculations Version format compliance Advisory Refinement description Experimental preparation Advisory Database references Derived calculations 1 0 2000-11-22 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2018-01-31 1 5 2021-11-03 _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.temp _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details RCSB Y RCSB 2000-10-03 REL SER 636 n 1 SER 636 A ARG 637 n 2 ARG 637 A ASN 638 n 3 ASN 638 A ILE 639 n 4 ILE 639 A CAS 640 n 5 CAS 640 A TYR 641 n 6 TYR 641 A ASP 642 n 7 ASP 642 A ALA 643 n 8 ALA 643 A PHE 644 n 9 PHE 644 A VAL 645 n 10 VAL 645 A SER 646 n 11 SER 646 A TYR 647 n 12 TYR 647 A SER 648 n 13 SER 648 A GLU 649 n 14 GLU 649 A ARG 650 n 15 ARG 650 A ASP 651 n 16 ASP 651 A ALA 652 n 17 ALA 652 A TYR 653 n 18 TYR 653 A TRP 654 n 19 TRP 654 A VAL 655 n 20 VAL 655 A GLU 656 n 21 GLU 656 A ASN 657 n 22 ASN 657 A LEU 658 n 23 LEU 658 A MET 659 n 24 MET 659 A VAL 660 n 25 VAL 660 A GLN 661 n 26 GLN 661 A GLU 662 n 27 GLU 662 A LEU 663 n 28 LEU 663 A GLU 664 n 29 GLU 664 A ASN 665 n 30 ASN 665 A PHE 666 n 31 PHE 666 A ASN 667 n 32 ASN 667 A PRO 668 n 33 PRO 668 A PRO 669 n 34 PRO 669 A PHE 670 n 35 PHE 670 A LYS 671 n 36 LYS 671 A LEU 672 n 37 LEU 672 A CAS 673 n 38 CAS 673 A LEU 674 n 39 LEU 674 A HIS 675 n 40 HIS 675 A LYS 676 n 41 LYS 676 A ARG 677 n 42 ARG 677 A ASP 678 n 43 ASP 678 A PHE 679 n 44 PHE 679 A ILE 680 n 45 ILE 680 A HIS 681 n 46 HIS 681 A GLY 682 n 47 GLY 682 A LYS 683 n 48 LYS 683 A TRP 684 n 49 TRP 684 A ILE 685 n 50 ILE 685 A ILE 686 n 51 ILE 686 A ASP 687 n 52 ASP 687 A ASN 688 n 53 ASN 688 A ILE 689 n 54 ILE 689 A ILE 690 n 55 ILE 690 A ASP 691 n 56 ASP 691 A SER 692 n 57 SER 692 A ILE 693 n 58 ILE 693 A GLU 694 n 59 GLU 694 A LYS 695 n 60 LYS 695 A SER 696 n 61 SER 696 A HIS 697 n 62 HIS 697 A LYS 698 n 63 LYS 698 A THR 699 n 64 THR 699 A VAL 700 n 65 VAL 700 A PHE 701 n 66 PHE 701 A VAL 702 n 67 VAL 702 A LEU 703 n 68 LEU 703 A SER 704 n 69 SER 704 A GLU 705 n 70 GLU 705 A ASN 706 n 71 ASN 706 A PHE 707 n 72 PHE 707 A VAL 708 n 73 VAL 708 A LYS 709 n 74 LYS 709 A SER 710 n 75 SER 710 A GLU 711 n 76 GLU 711 A TRP 712 n 77 TRP 712 A CAS 713 n 78 CAS 713 A LYS 714 n 79 LYS 714 A TYR 715 n 80 TYR 715 A GLU 716 n 81 GLU 716 A LEU 717 n 82 LEU 717 A ASP 718 n 83 ASP 718 A PHE 719 n 84 PHE 719 A SER 720 n 85 SER 720 A HIS 721 n 86 HIS 721 A PHE 722 n 87 PHE 722 A ARG 723 n 88 ARG 723 A LEU 724 n 89 LEU 724 A PHE 725 n 90 PHE 725 A ASP 726 n 91 ASP 726 A GLU 727 n 92 GLU 727 A ASN 728 n 93 ASN 728 A ASN 729 n 94 ASN 729 A ASP 730 n 95 ASP 730 A ALA 731 n 96 ALA 731 A ALA 732 n 97 ALA 732 A ILE 733 n 98 ILE 733 A LEU 734 n 99 LEU 734 A ILE 735 n 100 ILE 735 A LEU 736 n 101 LEU 736 A LEU 737 n 102 LEU 737 A GLU 738 n 103 GLU 738 A PRO 739 n 104 PRO 739 A ILE 740 n 105 ILE 740 A GLU 741 n 106 GLU 741 A LYS 742 n 107 LYS 742 A LYS 743 n 108 LYS 743 A ALA 744 n 109 ALA 744 A ILE 745 n 110 ILE 745 A PRO 746 n 111 PRO 746 A GLN 747 n 112 GLN 747 A ARG 748 n 113 ARG 748 A PHE 749 n 114 PHE 749 A CAS 750 n 115 CAS 750 A LYS 751 n 116 LYS 751 A LEU 752 n 117 LEU 752 A ARG 753 n 118 ARG 753 A LYS 754 n 119 LYS 754 A ILE 755 n 120 ILE 755 A MET 756 n 121 MET 756 A ASN 757 n 122 ASN 757 A THR 758 n 123 THR 758 A LYS 759 n 124 LYS 759 A THR 760 n 125 THR 760 A TYR 761 n 126 TYR 761 A LEU 762 n 127 LEU 762 A GLU 763 n 128 GLU 763 A TRP 764 n 129 TRP 764 A PRO 765 n 130 PRO 765 A MET 766 n 131 MET 766 A ASP 767 n 132 ASP 767 A GLU 768 n 133 GLU 768 A ALA 769 n 134 ALA 769 A GLN 770 n 135 GLN 770 A ARG 771 n 136 ARG 771 A GLU 772 n 137 GLU 772 A GLY 773 n 138 GLY 773 A PHE 774 n 139 PHE 774 A TRP 775 n 140 TRP 775 A VAL 776 n 141 VAL 776 A ASN 777 n 142 ASN 777 A LEU 778 n 143 LEU 778 A ARG 779 n 144 ARG 779 A ALA 780 n 145 ALA 780 A ALA 781 n 146 ALA 781 A ILE 782 n 147 ILE 782 A LYS 783 n 148 LYS 783 A SER 784 n 149 SER 784 A author_defined_assembly 1 monomeric software_defined_assembly PISA,PQS 2 dimeric 2160 -21 17520 A CAS 640 S-(DIMETHYLARSENIC)CYSTEINE A CAS 5 CYS A CAS 673 S-(DIMETHYLARSENIC)CYSTEINE A CAS 38 CYS A CAS 713 S-(DIMETHYLARSENIC)CYSTEINE A CAS 78 CYS A CAS 750 S-(DIMETHYLARSENIC)CYSTEINE A CAS 115 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_675 -x+1,-y+2,z crystal symmetry operation 0.0000000000 211.4834036042 0.0000000000 A N PHE 644 A N PHE 9 A O LYS 698 A O LYS 63 A O THR 699 A O THR 64 A N ILE 733 A N ILE 98 A O LEU 734 A O LEU 99 A N LEU 762 A N LEU 127 1 A CZ ARG 637 A CZ ARG 2 0 Y 1 A NH1 ARG 637 A NH1 ARG 2 0 Y 1 A NH2 ARG 637 A NH2 ARG 2 0 Y 1 A CE1 CAS 640 A CE1 CAS 5 1 Y 1 A CE2 CAS 640 A CE2 CAS 5 1 Y 1 A CG GLU 649 A CG GLU 14 0 Y 1 A CD GLU 649 A CD GLU 14 0 Y 1 A OE1 GLU 649 A OE1 GLU 14 0 Y 1 A OE2 GLU 649 A OE2 GLU 14 0 Y 1 A CD GLN 661 A CD GLN 26 0 Y 1 A OE1 GLN 661 A OE1 GLN 26 0 Y 1 A NE2 GLN 661 A NE2 GLN 26 0 Y 1 A CG LYS 671 A CG LYS 36 0 Y 1 A CD LYS 671 A CD LYS 36 0 Y 1 A CE LYS 671 A CE LYS 36 0 Y 1 A NZ LYS 671 A NZ LYS 36 0 Y 1 A CE1 CAS 673 A CE1 CAS 38 1 Y 1 A CE2 CAS 673 A CE2 CAS 38 1 Y 1 A CD LYS 683 A CD LYS 48 0 Y 1 A CE LYS 683 A CE LYS 48 0 Y 1 A NZ LYS 683 A NZ LYS 48 0 Y 1 A CG LYS 695 A CG LYS 60 0 Y 1 A CD LYS 695 A CD LYS 60 0 Y 1 A CE LYS 695 A CE LYS 60 0 Y 1 A NZ LYS 695 A NZ LYS 60 0 Y 1 A CD LYS 709 A CD LYS 74 0 Y 1 A CE LYS 709 A CE LYS 74 0 Y 1 A NZ LYS 709 A NZ LYS 74 0 Y 1 A CE1 CAS 713 A CE1 CAS 78 1 Y 1 A CE2 CAS 713 A CE2 CAS 78 1 Y 1 A CG ASP 726 A CG ASP 91 0 Y 1 A OD1 ASP 726 A OD1 ASP 91 0 Y 1 A OD2 ASP 726 A OD2 ASP 91 0 Y 1 A CG ASN 728 A CG ASN 93 0 Y 1 A OD1 ASN 728 A OD1 ASN 93 0 Y 1 A ND2 ASN 728 A ND2 ASN 93 0 Y 1 A CG LYS 743 A CG LYS 108 0 Y 1 A CD LYS 743 A CD LYS 108 0 Y 1 A CE LYS 743 A CE LYS 108 0 Y 1 A NZ LYS 743 A NZ LYS 108 0 Y 1 A CE1 CAS 750 A CE1 CAS 115 1 Y 1 A CE2 CAS 750 A CE2 CAS 115 1 Y 1 A CD LYS 754 A CD LYS 119 0 Y 1 A CE LYS 754 A CE LYS 119 0 Y 1 A NZ LYS 754 A NZ LYS 119 0 Y 1 A CD LYS 783 A CD LYS 148 0 Y 1 A CE LYS 783 A CE LYS 148 0 Y 1 A NZ LYS 783 A NZ LYS 148 0 Y 1 A ARG 723 A ARG 88 0 Y 1 A LEU 724 A LEU 89 0 Y 1 A PHE 725 A PHE 90 0 Y 1 A ASN 638 171.92 38.69 1 A ILE 639 -97.35 46.95 1 A ASN 657 -122.68 -76.82 1 A LEU 663 -125.79 -62.28 1 A HIS 675 -29.18 -56.56 1 A ARG 677 -141.44 -26.78 1 A LYS 683 -46.81 152.20 1 A ILE 689 -53.97 -78.45 1 A GLU 716 -72.33 -72.50 1 A SER 720 -7.68 65.44 1 A HIS 721 -132.40 -33.79 1 A ARG 723 -52.13 -6.52 1 A PHE 725 64.19 114.84 1 A ASP 726 -48.41 -18.49 1 A ASN 729 -110.88 66.60 1 A ASP 730 67.53 -15.95 1 A ALA 731 64.86 152.03 1 A GLU 741 -67.49 97.53 1 A PRO 746 -19.33 -105.37 1 A GLN 747 167.29 -26.50 1 A TYR 761 170.10 156.66 0.2840000 0.2420000 0.2600000 0.2420000 2.8 20 650 10500 8920 7.5% 1 1 2 Engh & Huber 2.8 20 0 1269 0 0 1269 0.007 1.4 35 2.8 40 1FYX 10500 10002 0.5 1 0.0590000 1 28 8 96 0.2320000 2.8 2.9 1 2 68 refinement CNS data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF P681H MUTANT OF TIR DOMAIN OF HUMAN TLR2 1 N N A SER 648 A SER 13 HELX_P A ARG 650 A ARG 15 5 1 3 A ASP 651 A ASP 16 HELX_P A ASN 657 A ASN 22 1 2 7 A ASN 657 A ASN 22 HELX_P A GLU 664 A GLU 29 1 3 8 A LEU 674 A LEU 39 HELX_P A PHE 679 A PHE 44 1 4 6 A TRP 684 A TRP 49 HELX_P A SER 696 A SER 61 1 5 13 A SER 704 A SER 69 HELX_P A TRP 712 A TRP 77 1 6 9 A PHE 725 A PHE 90 HELX_P A ASN 729 A ASN 94 5 7 5 A LYS 751 A LYS 116 HELX_P A LYS 759 A LYS 124 1 8 9 A ASP 767 A ASP 132 HELX_P A ALA 769 A ALA 134 5 9 3 A GLN 770 A GLN 135 HELX_P A SER 784 A SER 149 1 10 15 covale 1.332 both A ILE 639 A C ILE 4 1_555 A CAS 640 A N CAS 5 1_555 covale 1.327 both A CAS 640 A C CAS 5 1_555 A TYR 641 A N TYR 6 1_555 covale 1.329 both A LEU 672 A C LEU 37 1_555 A CAS 673 A N CAS 38 1_555 covale 1.324 both A CAS 673 A C CAS 38 1_555 A LEU 674 A N LEU 39 1_555 covale 1.336 both A TRP 712 A C TRP 77 1_555 A CAS 713 A N CAS 78 1_555 covale 1.321 both A CAS 713 A C CAS 78 1_555 A LYS 714 A N LYS 79 1_555 covale 1.329 both A PHE 749 A C PHE 114 1_555 A CAS 750 A N CAS 115 1_555 covale 1.329 both A CAS 750 A C CAS 115 1_555 A LYS 751 A N LYS 116 1_555 SIGNALING PROTEIN beta-alpha-beta fold, SIGNALING PROTEIN A ASN 667 A ASN 32 1 A PRO 668 A PRO 33 -0.05 TLR2_HUMAN UNP 1 636 O60603 SRNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKY ELDFSHFRLFEENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS 636 784 1FYX 636 784 O60603 A 1 1 149 1 CYS modified residue CAS 640 1FYX A O60603 UNP 640 5 1 CYS modified residue CAS 673 1FYX A O60603 UNP 673 38 1 PRO modified residue HIS 681 1FYX A O60603 UNP 681 46 1 CYS modified residue CAS 713 1FYX A O60603 UNP 713 78 1 GLU engineered mutation ASP 726 1FYX A O60603 UNP 726 91 1 CYS modified residue CAS 750 1FYX A O60603 UNP 750 115 4 parallel parallel parallel A ALA 643 A ALA 8 A SER 646 A SER 11 A LYS 698 A LYS 63 A LEU 703 A LEU 68 A ILE 733 A ILE 98 A LEU 736 A LEU 101 A LEU 762 A LEU 127 A GLU 763 A GLU 128 180 P 62 2 2