0.019593 0.000000 0.000000 0.000000 0.017094 0.000000 0.000000 0.000000 0.013220 0.00000 0.00000 0.00000 Odagaki, Y. Ohmoto, K. Matsuoka, S. Hamanaka, N. Nakai, H. Toda, M. Katsuya, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 51.038 58.500 75.643 C23 H30 N6 O4 454.522 2-(5-AMINO-6-OXO-2-PHENYL-6H-PYRIMIDIN-1-YL)-N-[2-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)-1-(METHYLETHYL)-2-HYDROXYETHYL]ACETAMIDE ONO-6818 non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Bioorg.Med.Chem. BMECEP 1200 0968-0896 9 647 651 10.1016/S0968-0896(00)00277-7 11310599 The crystal structure of the complex of non-peptidic inhibitor of human neutrophil elastase ONO-6818 and porcine pancreatic elastase. 2001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 298 1 IMAGE PLATE 1999-03-10 RIGAKU RAXIS IV SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 25929.016 ELASTASE 1 3.4.21.36 1 nat polymer 454.522 2-(5-AMINO-6-OXO-2-PHENYL-6H-PYRIMIDIN-1-YL)-N-[2-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)-1-(METHYLETHYL)-2-HYDROXYETHYL]ACETAMIDE 1 syn non-polymer 18.015 water 64 nat water no no VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNDGTEQYVGVQKIVVH PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS SSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNDGTEQYVGVQKIVVH PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS SSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n pig Sus sample 9823 PANCREAS Sus scrofa 1 2.18 43.50 VAPOR DIFFUSION, HANGING DROP 5.0 Sodium sulfate, Sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K 298.0 software repository Initial release Version format compliance Version format compliance Refinement description 1 0 2001-10-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 RCSB Y RCSB 2000-10-04 REL 681 2-(5-AMINO-6-OXO-2-PHENYL-6H-PYRIMIDIN-1-YL)-N-[2-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)-1-(METHYLETHYL)-2-HYDROXYETHYL]ACETAMIDE HOH water 681 195 2 681 681 395 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 285 3 HOH HOH 285 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A VAL 16 n 1 VAL 16 A VAL 17 n 2 VAL 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A THR 20 n 5 THR 20 A GLU 21 n 6 GLU 21 A ALA 22 n 7 ALA 22 A GLN 23 n 8 GLN 23 A ARG 24 n 9 ARG 24 A ASN 25 n 10 ASN 25 A SER 26 n 11 SER 26 A TRP 27 n 12 TRP 27 A PRO 28 n 13 PRO 28 A SER 29 n 14 SER 29 A GLN 30 n 15 GLN 30 A ILE 31 n 16 ILE 31 A SER 32 n 17 SER 32 A LEU 33 n 18 LEU 33 A GLN 34 n 19 GLN 34 A TYR 35 n 20 TYR 35 A ARG 36 n 21 ARG 36 A SER 36 n 22 A SER 36 A GLY 36 n 23 B GLY 36 A SER 36 n 24 C SER 36 A SER 37 n 25 SER 37 A TRP 38 n 26 TRP 38 A ALA 39 n 27 ALA 39 A HIS 40 n 28 HIS 40 A THR 41 n 29 THR 41 A CYS 42 n 30 CYS 42 A GLY 43 n 31 GLY 43 A GLY 44 n 32 GLY 44 A THR 45 n 33 THR 45 A LEU 46 n 34 LEU 46 A ILE 47 n 35 ILE 47 A ARG 48 n 36 ARG 48 A GLN 49 n 37 GLN 49 A ASN 50 n 38 ASN 50 A TRP 51 n 39 TRP 51 A VAL 52 n 40 VAL 52 A MET 53 n 41 MET 53 A THR 54 n 42 THR 54 A ALA 55 n 43 ALA 55 A ALA 56 n 44 ALA 56 A HIS 57 n 45 HIS 57 A CYS 58 n 46 CYS 58 A VAL 59 n 47 VAL 59 A ASP 60 n 48 ASP 60 A ARG 61 n 49 ARG 61 A GLU 62 n 50 GLU 62 A LEU 63 n 51 LEU 63 A THR 64 n 52 THR 64 A PHE 65 n 53 PHE 65 A ARG 65 n 54 A ARG 65 A VAL 66 n 55 VAL 66 A VAL 67 n 56 VAL 67 A VAL 68 n 57 VAL 68 A GLY 69 n 58 GLY 69 A GLU 70 n 59 GLU 70 A HIS 71 n 60 HIS 71 A ASN 72 n 61 ASN 72 A LEU 73 n 62 LEU 73 A ASN 74 n 63 ASN 74 A GLN 75 n 64 GLN 75 A ASN 76 n 65 ASN 76 A ASN 77 n 66 ASP 77 A GLY 78 n 67 GLY 78 A THR 79 n 68 THR 79 A GLU 80 n 69 GLU 80 A GLN 81 n 70 GLN 81 A TYR 82 n 71 TYR 82 A VAL 83 n 72 VAL 83 A GLY 84 n 73 GLY 84 A VAL 85 n 74 VAL 85 A GLN 86 n 75 GLN 86 A LYS 87 n 76 LYS 87 A ILE 88 n 77 ILE 88 A VAL 89 n 78 VAL 89 A VAL 90 n 79 VAL 90 A HIS 91 n 80 HIS 91 A PRO 92 n 81 PRO 92 A TYR 93 n 82 TYR 93 A TRP 94 n 83 TRP 94 A ASN 95 n 84 ASN 95 A THR 96 n 85 THR 96 A ASP 97 n 86 ASP 97 A ASP 98 n 87 ASP 98 A VAL 99 n 88 VAL 99 A ALA 99 n 89 A ALA 99 A ALA 99 n 90 B ALA 99 A GLY 100 n 91 GLY 100 A TYR 101 n 92 TYR 101 A ASP 102 n 93 ASP 102 A ILE 103 n 94 ILE 103 A ALA 104 n 95 ALA 104 A LEU 105 n 96 LEU 105 A LEU 106 n 97 LEU 106 A ARG 107 n 98 ARG 107 A LEU 108 n 99 LEU 108 A ALA 109 n 100 ALA 109 A GLN 110 n 101 GLN 110 A SER 111 n 102 SER 111 A VAL 112 n 103 VAL 112 A THR 113 n 104 THR 113 A LEU 114 n 105 LEU 114 A ASN 115 n 106 ASN 115 A SER 116 n 107 SER 116 A TYR 117 n 108 TYR 117 A VAL 118 n 109 VAL 118 A GLN 119 n 110 GLN 119 A LEU 120 n 111 LEU 120 A GLY 121 n 112 GLY 121 A VAL 122 n 113 VAL 122 A LEU 123 n 114 LEU 123 A PRO 124 n 115 PRO 124 A ARG 125 n 116 ARG 125 A ALA 126 n 117 ALA 126 A GLY 127 n 118 GLY 127 A THR 128 n 119 THR 128 A ILE 129 n 120 ILE 129 A LEU 130 n 121 LEU 130 A ALA 131 n 122 ALA 131 A ASN 132 n 123 ASN 132 A ASN 133 n 124 ASN 133 A SER 134 n 125 SER 134 A PRO 135 n 126 PRO 135 A CYS 136 n 127 CYS 136 A TYR 137 n 128 TYR 137 A ILE 138 n 129 ILE 138 A THR 139 n 130 THR 139 A GLY 140 n 131 GLY 140 A TRP 141 n 132 TRP 141 A GLY 142 n 133 GLY 142 A LEU 143 n 134 LEU 143 A THR 144 n 135 THR 144 A ARG 145 n 136 ARG 145 A THR 147 n 137 THR 147 A ASN 148 n 138 ASN 148 A GLY 149 n 139 GLY 149 A GLN 150 n 140 GLN 150 A LEU 151 n 141 LEU 151 A ALA 152 n 142 ALA 152 A GLN 153 n 143 GLN 153 A THR 154 n 144 THR 154 A LEU 155 n 145 LEU 155 A GLN 156 n 146 GLN 156 A GLN 157 n 147 GLN 157 A ALA 158 n 148 ALA 158 A TYR 159 n 149 TYR 159 A LEU 160 n 150 LEU 160 A PRO 161 n 151 PRO 161 A THR 162 n 152 THR 162 A VAL 163 n 153 VAL 163 A ASP 164 n 154 ASP 164 A TYR 165 n 155 TYR 165 A ALA 166 n 156 ALA 166 A ILE 167 n 157 ILE 167 A CYS 168 n 158 CYS 168 A SER 169 n 159 SER 169 A SER 170 n 160 SER 170 A SER 170 n 161 A SER 170 A SER 170 n 162 B SER 170 A TYR 171 n 163 TYR 171 A TRP 172 n 164 TRP 172 A GLY 173 n 165 GLY 173 A SER 174 n 166 SER 174 A THR 175 n 167 THR 175 A VAL 176 n 168 VAL 176 A LYS 177 n 169 LYS 177 A ASN 178 n 170 ASN 178 A SER 179 n 171 SER 179 A MET 180 n 172 MET 180 A VAL 181 n 173 VAL 181 A CYS 182 n 174 CYS 182 A ALA 183 n 175 ALA 183 A GLY 184 n 176 GLY 184 A GLY 185 n 177 GLY 185 A ASP 186 n 178 ASP 186 A GLY 187 n 179 GLY 187 A VAL 188 n 180 VAL 188 A ARG 188 n 181 A ARG 188 A SER 189 n 182 SER 189 A GLY 190 n 183 GLY 190 A CYS 191 n 184 CYS 191 A GLN 192 n 185 GLN 192 A GLY 193 n 186 GLY 193 A ASP 194 n 187 ASP 194 A 681 195 n 188 SER 195 A GLY 196 n 189 GLY 196 A GLY 197 n 190 GLY 197 A PRO 198 n 191 PRO 198 A LEU 199 n 192 LEU 199 A HIS 200 n 193 HIS 200 A CYS 201 n 194 CYS 201 A LEU 202 n 195 LEU 202 A VAL 203 n 196 VAL 203 A ASN 204 n 197 ASN 204 A GLY 205 n 198 GLY 205 A GLN 206 n 199 GLN 206 A TYR 207 n 200 TYR 207 A ALA 208 n 201 ALA 208 A VAL 209 n 202 VAL 209 A HIS 210 n 203 HIS 210 A GLY 211 n 204 GLY 211 A VAL 212 n 205 VAL 212 A THR 213 n 206 THR 213 A SER 214 n 207 SER 214 A PHE 215 n 208 PHE 215 A VAL 216 n 209 VAL 216 A SER 217 n 210 SER 217 A ARG 217 n 211 A ARG 217 A LEU 218 n 212 LEU 218 A GLY 219 n 213 GLY 219 A CYS 220 n 214 CYS 220 A ASN 221 n 215 ASN 221 A VAL 221 n 216 A VAL 221 A THR 222 n 217 THR 222 A ARG 223 n 218 ARG 223 A LYS 224 n 219 LYS 224 A PRO 225 n 220 PRO 225 A THR 226 n 221 THR 226 A VAL 227 n 222 VAL 227 A PHE 228 n 223 PHE 228 A THR 229 n 224 THR 229 A ARG 230 n 225 ARG 230 A VAL 231 n 226 VAL 231 A SER 232 n 227 SER 232 A ALA 233 n 228 ALA 233 A TYR 234 n 229 TYR 234 A ILE 235 n 230 ILE 235 A SER 236 n 231 SER 236 A TRP 237 n 232 TRP 237 A ILE 238 n 233 ILE 238 A ASN 239 n 234 ASN 239 A ASN 240 n 235 ASN 240 A VAL 241 n 236 VAL 241 A ILE 242 n 237 ILE 242 A ALA 243 n 238 ALA 243 A SER 244 n 239 SER 244 A ASN 245 n 240 ASN 245 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 20 A N THR 5 A O GLN 157 A O GLN 147 A O ALA 158 A O ALA 148 A N ILE 138 A N ILE 129 A N THR 139 A N THR 130 A O PRO 198 A O PRO 191 A N VAL 203 A N VAL 196 A O GLN 206 A O GLN 199 A O PHE 215 A O PHE 208 A N VAL 227 A N VAL 222 A N PHE 228 A N PHE 223 A O VAL 181 A O VAL 173 A O CYS 182 A O CYS 174 A N VAL 163 A N VAL 153 A N ILE 47 A N ILE 35 A O TRP 51 A O TRP 39 A N THR 54 A N THR 42 A O ALA 104 A O ALA 95 A O ARG 107 A O ARG 98 A N GLN 86 A N GLN 75 A N VAL 85 A N VAL 74 A O PHE 65 A O PHE 53 1 A HIS 71 -128.47 -53.49 1 A THR 79 -140.48 -4.09 1 A THR 96 -36.79 136.39 1 A ASP 97 63.18 -10.02 1 A TYR 171 -108.13 -111.52 1 A SER 189 178.46 176.40 0.238 0.198 1.86 10.00 1724 19460 19409 98.8 RANDOM 1 2 1.86 10.00 64 1919 33 0 1822 0.005 1.33 1.86 10.00 1FZZ 19460 19409 1.0 1.0 0.055 1 9.78 5.38 98.6 0.371 1.86 1.92 1675 4.41 0.96 model building X-PLOR refinement X-PLOR 3.851 phasing X-PLOR ELASTASE 1 (E.C.3.4.21.36) THE CRYSTAL STRUCTURE OF THE COMPLEX OF NON-PEPTIDIC INHIBITOR ONO-6818 AND PORCINE PANCREATIC ELASTASE. 1 N N 2 N N 3 N N A ALA 55 A ALA 43 HELX_P A VAL 59 A VAL 47 5 1 5 A ASP 98 A ASP 87 HELX_P A GLY 100 A GLY 91 5 2 5 A ASP 164 A ASP 154 HELX_P A SER 169 A SER 159 1 3 6 A TRP 172 A TRP 164 HELX_P A VAL 176 A VAL 168 5 4 5 A TYR 234 A TYR 229 HELX_P A SER 244 A SER 239 1 5 11 disulf 2.029 A CYS 42 A SG CYS 30 1_555 A CYS 58 A SG CYS 46 1_555 disulf 2.027 A CYS 136 A SG CYS 127 1_555 A CYS 201 A SG CYS 194 1_555 disulf 2.026 A CYS 168 A SG CYS 158 1_555 A CYS 182 A SG CYS 174 1_555 disulf 2.035 A CYS 191 A SG CYS 184 1_555 A CYS 220 A SG CYS 214 1_555 covale 1.439 A SER 195 A OG SER 188 1_555 A 681 395 B C1 681 1_555 covale 2.026 A SER 195 A OG SER 188 1_555 A 681 395 B O1 681 1_555 HYDROLASE Enzyme-Inhibitor Complex, HYDROLASE ELA1_PIG UNP 1 27 P00772 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNDGTEQYVGVQKIVVH PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS SSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN 27 266 1FZZ 16 245 P00772 A 1 1 240 8 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 20 A THR 5 A GLU 21 A GLU 6 A GLN 156 A GLN 146 A TYR 159 A TYR 149 A CYS 136 A CYS 127 A GLY 140 A GLY 131 A PRO 198 A PRO 191 A VAL 203 A VAL 196 A GLN 206 A GLN 199 A PHE 215 A PHE 208 A THR 226 A THR 221 A ARG 230 A ARG 225 A MET 180 A MET 172 A ALA 183 A ALA 175 A THR 162 A THR 152 A VAL 163 A VAL 153 A SER 37 A SER 25 A ARG 48 A ARG 36 A TRP 51 A TRP 39 A THR 54 A THR 42 A ALA 104 A ALA 95 A LEU 108 A LEU 99 A GLN 81 A GLN 70 A VAL 90 A VAL 79 A PHE 65 A PHE 53 A VAL 68 A VAL 57 BINDING SITE FOR RESIDUE 681 A 395 Software 11 A HIS 57 A HIS 45 11 1_555 A CYS 191 A CYS 184 11 1_555 A GLN 192 A GLN 185 11 1_555 A GLY 193 A GLY 186 11 1_555 A ASP 194 A ASP 187 11 1_555 A SER 195 A SER 188 11 1_555 A THR 213 A THR 206 11 1_555 A SER 214 A SER 207 11 1_555 A PHE 215 A PHE 208 11 1_555 A VAL 216 A VAL 209 11 1_555 A HOH 281 C HOH 11 1_555 19 P 21 21 21