0.021669
0.000000
0.000000
0.000000
0.027100
0.000000
0.000000
0.000000
0.009088
0.000000
0.000000
0.000000
Urpi, L.
Navaza, J.
Subirana, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
46.149
36.900
110.030
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
US
J.Biomol.Struct.Dyn.
JBSDD6
0646
0739-1102
18
363
369
11149513
Alternation of DNA and solvent layers in the A form of d(GGCGCC) obtained by ethanol crystallization.
2000
10.2210/pdb1g00/pdb
pdb_00001g00
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298.0
1
DIFFRACTOMETER
1988-07-14
ENRAF-NONIUS CAD4
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ELLIOTT GX-21
1810.205
5'-D(*GP*GP*CP*GP*CP*C)-3'
6
syn
polymer
18.015
water
13
nat
water
no
no
(DG)(DG)(DC)(DG)(DC)(DC)
GGCGCC
A,B,C,D,E,F
polydeoxyribonucleotide
n
n
n
n
n
n
1
2.05
39.94
VAPOR DIFFUSION, SITTING DROP
7.0
ethanol, magnesium chloride, sodium cacodylate, tetra-arginine, spermine tetrachloride, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
298.0
ethanol
1
magnesium chloride
1
sodium cacodylate
1
tetra-arginine
1
spermine tetrachloride
1
-7.000
1
19
A
1
B
12
4.774
A_DG1:DC12_B
1
-0.360
-0.084
-0.232
-0.116
-2.320
1
19
A
2
B
11
2.983
A_DG2:DC11_B
2
-1.979
0.044
-0.075
-0.265
0.776
1
19
A
3
B
10
4.845
A_DC3:DG10_B
3
-14.304
0.251
-0.011
-0.282
-4.700
1
19
A
4
B
9
6.888
A_DG4:DC9_B
4
-17.519
0.075
-0.405
-0.264
-2.536
1
19
A
5
B
8
-1.474
A_DC5:DG8_B
5
-12.924
0.191
0.355
-0.072
2.322
1
19
A
6
B
7
7.734
A_DC6:DG7_B
6
-6.577
0.754
0.205
-0.141
-10.396
1
19
C
13
D
24
1.473
C_DG13:DC24_D
7
1.933
-0.175
-0.763
-0.374
-0.972
1
19
C
14
D
23
-1.592
C_DG14:DC23_D
8
-7.483
-0.372
-0.363
-0.466
6.145
1
19
C
15
D
22
-2.694
C_DC15:DG22_D
9
-6.685
-1.016
-0.386
-0.439
-7.855
1
19
C
16
D
21
4.374
C_DG16:DC21_D
10
-14.244
-0.600
-0.242
-0.288
-0.682
1
19
C
17
D
20
-2.708
C_DC17:DG20_D
11
-10.267
0.588
-0.123
-0.364
4.530
1
19
C
18
D
19
-1.975
C_DC18:DG19_D
12
-8.931
0.096
-0.282
-0.355
6.674
1
19
E
25
F
36
1.639
E_DG25:DC36_F
13
-6.919
-0.716
0.010
-0.333
-8.799
1
19
E
26
F
35
5.471
E_DG26:DC35_F
14
-16.965
-0.462
-0.406
-0.360
7.064
1
19
E
27
F
34
-1.744
E_DC27:DG34_F
15
-14.810
-0.315
-0.218
-0.320
-4.053
1
19
E
28
F
33
0.874
E_DG28:DC33_F
16
-9.740
0.909
-0.085
-0.327
4.237
1
19
E
29
F
32
-1.161
E_DC29:DG32_F
17
-6.968
0.237
-0.036
-0.342
2.472
33.253
A
A
1
2
19.106
B
B
12
11
3.085
10.708
-0.760
-1.695
AA_DG1DG2:DC11DC12_BB
1
-4.973
8.874
31.142
-4.535
0.597
2.989
31.207
A
A
2
3
10.950
B
B
11
10
3.316
5.857
0.185
-1.485
AA_DG2DC3:DG10DC11_BB
2
0.269
-0.503
30.664
-3.843
-0.294
2.442
32.987
A
A
3
4
24.733
B
B
10
9
3.450
13.568
-0.327
-1.495
AA_DC3DG4:DC9DG10_BB
3
5.927
-10.804
29.560
-4.831
1.535
2.643
33.355
A
A
4
5
24.950
B
B
9
8
3.282
13.802
-0.493
-0.950
AA_DG4DC5:DG8DC9_BB
4
-6.928
12.523
29.655
-3.862
-0.248
3.111
35.860
A
A
5
6
11.180
B
B
8
7
3.241
6.833
1.101
-0.905
AA_DC5DC6:DG7DG8_BB
5
3.681
-6.023
35.037
-2.432
-1.269
2.884
32.992
C
C
13
14
13.746
D
D
24
23
3.311
7.711
-0.257
-1.501
CC_DG13DG14:DC23DC24_DD
6
-4.832
8.615
31.746
-3.909
-0.340
2.780
23.496
C
C
14
15
8.086
D
D
23
22
3.094
3.277
-0.046
-1.995
CC_DG14DC15:DG22DC23_DD
7
-2.330
5.748
23.154
-5.898
-0.598
2.468
35.567
C
C
15
16
29.239
D
D
22
21
3.699
17.153
0.239
-1.664
CC_DC15DG16:DC21DG22_DD
8
-1.531
2.610
31.238
-5.248
-0.617
2.953
35.594
C
C
16
17
13.046
D
D
21
20
3.219
7.908
-0.924
-1.089
CC_DG16DC17:DG20DC21_DD
9
-1.959
3.231
34.678
-2.883
1.239
2.781
29.530
C
C
17
18
14.631
D
D
20
19
3.248
7.382
0.588
-1.547
CC_DC17DC18:DG19DG20_DD
10
0.537
-1.064
28.608
-4.504
-1.047
3.182
34.064
E
E
25
26
21.161
F
F
36
35
3.730
12.138
-0.574
-0.866
EE_DG25DG26:DC35DC36_FF
11
0.878
-1.531
31.876
-3.592
1.134
2.630
35.337
E
E
26
27
11.883
F
F
35
34
2.910
7.149
-0.003
-1.032
EE_DG26DC27:DG34DC35_FF
12
-4.330
7.197
34.365
-2.607
-0.545
2.521
39.788
E
E
27
28
27.818
F
F
34
33
3.621
18.274
-0.382
-1.623
EE_DC27DG28:DC33DG34_FF
13
0.112
-0.171
35.495
-4.501
0.574
2.882
32.547
E
E
28
29
7.837
F
F
33
32
3.032
4.377
0.629
-1.196
EE_DG28DC29:DG32DC33_FF
14
2.064
-3.696
32.195
-2.828
-0.795
software
diffrn_detector
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Data collection
Database references
1
0
2001-02-05
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
1
4
2018-04-18
1
5
2024-02-07
_diffrn_detector.detector
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
NDB
Y
NDB
2000-10-05
REL
REL
HOH
water
HOH
101
2
HOH
HOH
101
A
HOH
106
2
HOH
HOH
106
A
HOH
109
2
HOH
HOH
109
A
HOH
103
2
HOH
HOH
103
B
HOH
110
2
HOH
HOH
110
B
HOH
105
2
HOH
HOH
105
C
HOH
108
2
HOH
HOH
108
C
HOH
104
2
HOH
HOH
104
D
HOH
102
2
HOH
HOH
102
E
HOH
111
2
HOH
HOH
111
E
HOH
112
2
HOH
HOH
112
E
HOH
113
2
HOH
HOH
113
E
HOH
107
2
HOH
HOH
107
F
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
C
5
n
5
DC
5
A
C
6
n
6
DC
6
A
G
7
n
1
DG
7
B
G
8
n
2
DG
8
B
C
9
n
3
DC
9
B
G
10
n
4
DG
10
B
C
11
n
5
DC
11
B
C
12
n
6
DC
12
B
G
13
n
1
DG
13
C
G
14
n
2
DG
14
C
C
15
n
3
DC
15
C
G
16
n
4
DG
16
C
C
17
n
5
DC
17
C
C
18
n
6
DC
18
C
G
19
n
1
DG
19
D
G
20
n
2
DG
20
D
C
21
n
3
DC
21
D
G
22
n
4
DG
22
D
C
23
n
5
DC
23
D
C
24
n
6
DC
24
D
G
25
n
1
DG
25
E
G
26
n
2
DG
26
E
C
27
n
3
DC
27
E
G
28
n
4
DG
28
E
C
29
n
5
DC
29
E
C
30
n
6
DC
30
E
G
31
n
1
DG
31
F
G
32
n
2
DG
32
F
C
33
n
3
DC
33
F
G
34
n
4
DG
34
F
C
35
n
5
DC
35
F
C
36
n
6
DC
36
F
0.1950000
0.1880000
0.2560000
138
2839
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
HOH
103
H
HOH
1
E
C5'
DC
30
E
C5'
DC
6
1
Y
1
E
C4'
DC
30
E
C4'
DC
6
1
Y
1
E
O4'
DC
30
E
O4'
DC
6
1
Y
1
E
C3'
DC
30
E
C3'
DC
6
1
Y
1
E
O3'
DC
30
E
O3'
DC
6
1
Y
1
E
C2'
DC
30
E
C2'
DC
6
1
Y
1
E
C1'
DC
30
E
C1'
DC
6
1
Y
1
E
N1
DC
30
E
N1
DC
6
1
Y
1
E
C2
DC
30
E
C2
DC
6
1
Y
1
E
O2
DC
30
E
O2
DC
6
1
Y
1
E
N3
DC
30
E
N3
DC
6
1
Y
1
E
C4
DC
30
E
C4
DC
6
1
Y
1
E
N4
DC
30
E
N4
DC
6
1
Y
1
E
C5
DC
30
E
C5
DC
6
1
Y
1
E
C6
DC
30
E
C6
DC
6
1
Y
1
F
O5'
DG
31
F
O5'
DG
1
1
Y
1
F
C5'
DG
31
F
C5'
DG
1
1
Y
1
F
C4'
DG
31
F
C4'
DG
1
1
Y
1
F
O4'
DG
31
F
O4'
DG
1
1
Y
1
F
C3'
DG
31
F
C3'
DG
1
1
Y
1
F
C2'
DG
31
F
C2'
DG
1
1
Y
1
F
C1'
DG
31
F
C1'
DG
1
1
Y
1
F
N9
DG
31
F
N9
DG
1
1
Y
1
F
C8
DG
31
F
C8
DG
1
1
Y
1
F
N7
DG
31
F
N7
DG
1
1
Y
1
F
C5
DG
31
F
C5
DG
1
1
Y
1
F
C6
DG
31
F
C6
DG
1
1
Y
1
F
O6
DG
31
F
O6
DG
1
1
Y
1
F
N1
DG
31
F
N1
DG
1
1
Y
1
F
C2
DG
31
F
C2
DG
1
1
Y
1
F
N2
DG
31
F
N2
DG
1
1
Y
1
F
N3
DG
31
F
N3
DG
1
1
Y
1
F
C4
DG
31
F
C4
DG
1
1
Y
1
-2.52
0.40
104.50
101.98
B
B
B
O4'
C4'
C3'
DC
DC
DC
11
11
11
N
1
-2.60
0.40
104.50
101.90
E
E
E
O4'
C4'
C3'
DC
DC
DC
29
29
29
N
Used Konnert-Hendrickson conjugate-gradient algorithm instead of the full matrix approach.
0.2800000
0.1875000
0.2137000
0.2050000
2.3
8.0
2801
168
3376
2839
3093
78.7
Every 20 reflections one was kept for R-free calculations
1
2.0
MOLECULAR REPLACEMENT
A-DNA form fiber
Clowney et al.
Gelbin et al.
Parkinson et al.
2.3
8.0
13
700
0
687
0
0.005
1.1
2.297
55.015
1G00
3504
3504
1.0
0.0525000
1
1.0
79.0
0.2740000
2.30
2.45
456
1.0
61.8
phasing
AMoRE
refinement
SHELXL-97
data reduction
CAD4
ALTERNATION OF DNA AND SOLVENT LAYERS IN THE A FORM OF D(GGCGCC) OBTAINED BY ETHANOL CRYSTALLIZATION
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
12
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
12
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
12
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
11
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
11
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
11
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N3
DC
5
1_555
B
DG
8
B
N1
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
N4
DC
5
1_555
B
DG
8
B
O6
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
5
A
O2
DC
5
1_555
B
DG
8
B
N2
DG
2
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N3
DC
6
1_555
B
DG
7
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
N4
DC
6
1_555
B
DG
7
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
6
A
O2
DC
6
1_555
B
DG
7
B
N2
DG
1
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N1
DG
1
1_555
D
DC
24
D
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
13
C
N2
DG
1
1_555
D
DC
24
D
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
13
C
O6
DG
1
1_555
D
DC
24
D
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
14
C
N1
DG
2
1_555
D
DC
23
D
N3
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
14
C
N2
DG
2
1_555
D
DC
23
D
O2
DC
5
1_555
hydrog
WATSON-CRICK
C
DG
14
C
O6
DG
2
1_555
D
DC
23
D
N4
DC
5
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N3
DC
3
1_555
D
DG
22
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N4
DC
3
1_555
D
DG
22
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
15
C
O2
DC
3
1_555
D
DG
22
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DG
16
C
N1
DG
4
1_555
D
DC
21
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
16
C
N2
DG
4
1_555
D
DC
21
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
16
C
O6
DG
4
1_555
D
DC
21
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
C
DC
17
C
N3
DC
5
1_555
D
DG
20
D
N1
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
17
C
N4
DC
5
1_555
D
DG
20
D
O6
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
17
C
O2
DC
5
1_555
D
DG
20
D
N2
DG
2
1_555
hydrog
WATSON-CRICK
C
DC
18
C
N3
DC
6
1_555
D
DG
19
D
N1
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
18
C
N4
DC
6
1_555
D
DG
19
D
O6
DG
1
1_555
hydrog
WATSON-CRICK
C
DC
18
C
O2
DC
6
1_555
D
DG
19
D
N2
DG
1
1_555
hydrog
WATSON-CRICK
E
DG
25
E
N1
DG
1
1_555
F
DC
36
F
N3
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
25
E
N2
DG
1
1_555
F
DC
36
F
O2
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
25
E
O6
DG
1
1_555
F
DC
36
F
N4
DC
6
1_555
hydrog
WATSON-CRICK
E
DG
26
E
N1
DG
2
1_555
F
DC
35
F
N3
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
26
E
N2
DG
2
1_555
F
DC
35
F
O2
DC
5
1_555
hydrog
WATSON-CRICK
E
DG
26
E
O6
DG
2
1_555
F
DC
35
F
N4
DC
5
1_555
hydrog
WATSON-CRICK
E
DC
27
E
N3
DC
3
1_555
F
DG
34
F
N1
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
27
E
N4
DC
3
1_555
F
DG
34
F
O6
DG
4
1_555
hydrog
WATSON-CRICK
E
DC
27
E
O2
DC
3
1_555
F
DG
34
F
N2
DG
4
1_555
hydrog
WATSON-CRICK
E
DG
28
E
N1
DG
4
1_555
F
DC
33
F
N3
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
28
E
N2
DG
4
1_555
F
DC
33
F
O2
DC
3
1_555
hydrog
WATSON-CRICK
E
DG
28
E
O6
DG
4
1_555
F
DC
33
F
N4
DC
3
1_555
hydrog
WATSON-CRICK
E
DC
29
E
N3
DC
5
1_555
F
DG
32
F
N1
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
29
E
N4
DC
5
1_555
F
DG
32
F
O6
DG
2
1_555
hydrog
WATSON-CRICK
E
DC
29
E
O2
DC
5
1_555
F
DG
32
F
N2
DG
2
1_555
DNA
DOUBLE HELIX, A-DNA, DNA LAYERS, DNA
1G00
PDB
1
1G00
1
6
1G00
1
6
1G00
A
1
1
6
7
12
1G00
7
12
1G00
B
1
1
6
13
18
1G00
13
18
1G00
C
1
1
6
19
24
1G00
19
24
1G00
D
1
1
6
25
30
1G00
25
30
1G00
E
1
1
6
31
36
1G00
31
36
1G00
F
1
1
6
20
C 2 2 21