1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kozin, S.A. Bertho, G. Mazur, A.K. Rabesona, H. Girault, J.-P. Haertle, T. Takahashi, M. Debey, P. Hui Bon Hoa, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 276 46364 46370 10.1074/jbc.M108014200 11577109 Sheep prion protein synthetic peptide spanning helix 1 and beta-strand 2 (residues 142-166) shows beta-hairpin structure in solution. 2001 10.2210/pdb1g04/pdb pdb_00001g04 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3431.729 MAJOR PRION PROTEIN 1 syn polymer no no GNDYEDRYYRENMYRYPNQVYYRPVC GNDYEDRYYRENMYRYPNQVYYRPVC A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2002-01-23 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-23 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 2000-10-05 REL REL This peptide was chemically synthesized. Except for the C-terminal Cysteine, this sequence occurs naturally in sheep. sample structures with favorable non-bond energy 1000 21 2D NOESY 15mM 6.5 1 atm 278 K The structures are based on a total of 169 interresidual NOE-derived distance constraints. simulated annealing torsion angle dynamics 21 minimized average structure 4.5mM 10mM sodium phosphate buffer, pH 6.5; 90% H2O, 10% D2O bruker sowttfare collection XwinNMR 2.1 500 Bruker AMX GLY 1 n 1 GLY 1 A ASN 2 n 2 ASN 2 A ASP 3 n 3 ASP 3 A TYR 4 n 4 TYR 4 A GLU 5 n 5 GLU 5 A ASP 6 n 6 ASP 6 A ARG 7 n 7 ARG 7 A TYR 8 n 8 TYR 8 A TYR 9 n 9 TYR 9 A ARG 10 n 10 ARG 10 A GLU 11 n 11 GLU 11 A ASN 12 n 12 ASN 12 A MET 13 n 13 MET 13 A TYR 14 n 14 TYR 14 A ARG 15 n 15 ARG 15 A TYR 16 n 16 TYR 16 A PRO 17 n 17 PRO 17 A ASN 18 n 18 ASN 18 A GLN 19 n 19 GLN 19 A VAL 20 n 20 VAL 20 A TYR 21 n 21 TYR 21 A TYR 22 n 22 TYR 22 A ARG 23 n 23 ARG 23 A PRO 24 n 24 PRO 24 A VAL 25 n 25 VAL 25 A CYS 26 n 26 CYS 26 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A A OD1 HH ASN TYR 18 21 1.58 7 A A H1 H GLY ASN 1 2 1.34 7 A A OD1 HH ASN TYR 18 21 1.59 9 A A H1 H GLY ASN 1 2 1.33 10 A A H1 H GLY ASN 1 2 1.34 21 A A H1 H GLY ASN 1 2 1.33 1 A ARG 23 0.090 SIDE CHAIN 9 A ARG 15 0.107 SIDE CHAIN 9 A ARG 23 0.121 SIDE CHAIN 10 A ARG 15 0.098 SIDE CHAIN 11 A ARG 15 0.081 SIDE CHAIN 16 A ARG 7 0.077 SIDE CHAIN 1 A TYR 4 -174.30 -162.23 1 A GLU 5 -172.99 89.47 1 A ARG 7 -162.01 -73.03 1 A TYR 8 -21.70 109.82 1 A TYR 9 -45.36 106.81 1 A ASN 12 164.73 -75.68 1 A MET 13 -60.39 -169.17 1 A TYR 14 -59.58 78.49 1 A PRO 17 -75.02 -84.73 1 A ASN 18 -168.08 -70.02 1 A TYR 21 176.74 178.76 1 A TYR 22 -95.01 57.75 2 A TYR 4 -164.29 -159.23 2 A GLU 5 -170.21 84.67 2 A ARG 7 -164.54 -80.45 2 A TYR 8 -15.77 106.38 2 A TYR 9 -43.30 105.89 2 A ASN 12 163.34 -72.06 2 A MET 13 -62.30 -167.84 2 A TYR 14 -61.10 78.62 2 A PRO 17 -74.98 -87.24 2 A ASN 18 -165.57 -71.87 2 A TYR 21 -176.60 -170.70 2 A TYR 22 -104.23 48.33 3 A TYR 4 -172.07 -158.15 3 A GLU 5 -170.71 87.30 3 A ARG 7 -159.10 -70.42 3 A TYR 8 -25.48 110.05 3 A ASN 12 164.98 -75.92 3 A MET 13 -60.31 -168.01 3 A TYR 14 -61.65 80.83 3 A TYR 16 -172.50 147.77 3 A PRO 17 -75.02 -84.71 3 A ASN 18 -169.78 -75.01 3 A TYR 21 179.22 -177.30 3 A TYR 22 -97.44 50.76 4 A TYR 4 -165.00 -153.71 4 A GLU 5 -174.19 78.61 4 A ARG 7 -164.03 -70.51 4 A TYR 8 -27.11 105.41 4 A TYR 9 -45.80 104.82 4 A ASN 12 164.61 -75.27 4 A MET 13 -60.12 -165.11 4 A TYR 14 -64.27 78.58 4 A TYR 16 -176.81 148.93 4 A PRO 17 -75.01 -86.87 4 A ASN 18 -165.92 -74.05 4 A TYR 21 176.86 -177.22 4 A TYR 22 -101.78 51.96 5 A TYR 4 -171.27 -157.61 5 A GLU 5 -172.11 73.53 5 A ARG 7 -160.98 -70.49 5 A TYR 8 -26.66 112.02 5 A TYR 9 -47.07 101.84 5 A GLU 11 -105.55 -61.56 5 A ASN 12 167.94 -76.40 5 A MET 13 -59.53 -168.28 5 A TYR 14 -60.77 78.25 5 A TYR 16 -175.42 149.26 5 A PRO 17 -74.98 -87.55 5 A ASN 18 -162.82 -73.16 5 A TYR 21 174.54 -176.67 5 A TYR 22 -99.00 49.78 6 A TYR 4 -173.70 -160.26 6 A GLU 5 -169.64 77.08 6 A ARG 7 -157.68 -62.98 6 A TYR 8 -31.83 113.24 6 A TYR 9 -48.16 104.77 6 A ASN 12 165.08 -76.76 6 A MET 13 -60.38 -170.49 6 A TYR 14 -58.44 82.06 6 A TYR 16 -177.15 149.58 6 A PRO 17 -75.01 -80.91 6 A ASN 18 -173.48 -69.29 6 A TYR 21 -178.78 -177.87 6 A TYR 22 -100.15 44.71 7 A TYR 4 -169.95 -161.98 7 A GLU 5 -171.35 77.00 7 A ARG 7 -171.00 -67.36 7 A TYR 8 -29.04 107.54 7 A TYR 9 -46.86 108.37 7 A GLU 11 -109.66 -61.39 7 A ASN 12 165.41 -73.87 7 A MET 13 -61.95 -167.91 7 A TYR 14 -61.24 78.67 7 A TYR 16 -178.12 147.69 7 A PRO 17 -75.06 -82.06 7 A ASN 18 -168.58 -73.91 7 A TYR 21 -175.93 -177.69 7 A TYR 22 -95.19 54.90 8 A TYR 4 -171.95 -156.51 8 A GLU 5 -171.25 80.09 8 A ARG 7 -159.23 -78.05 8 A TYR 8 -21.01 109.08 8 A ASN 12 161.97 -74.06 8 A MET 13 -60.74 -168.87 8 A TYR 14 -61.07 76.70 8 A TYR 16 -174.09 149.38 8 A PRO 17 -75.02 -81.42 8 A ASN 18 -171.83 -71.59 8 A TYR 21 174.77 -176.89 8 A TYR 22 -101.73 46.86 9 A TYR 4 -171.22 -159.51 9 A GLU 5 -170.27 74.16 9 A ARG 7 -164.24 -72.42 9 A TYR 8 -22.19 109.65 9 A ASN 12 165.47 -72.74 9 A MET 13 -62.20 -166.67 9 A TYR 14 -62.13 77.09 9 A TYR 16 -178.78 146.90 9 A PRO 17 -74.93 -83.49 9 A ASN 18 -169.45 -71.41 9 A TYR 22 -98.38 48.84 10 A TYR 4 -171.09 -159.34 10 A GLU 5 -167.34 89.61 10 A ARG 7 -163.16 -76.58 10 A TYR 8 -20.36 105.41 10 A GLU 11 -107.16 -60.67 10 A ASN 12 162.84 -73.82 10 A MET 13 -62.09 -168.95 10 A TYR 14 -59.46 78.10 10 A TYR 16 -177.18 148.18 10 A PRO 17 -75.03 -81.45 10 A ASN 18 -170.23 -70.88 10 A TYR 21 174.90 178.48 10 A TYR 22 -96.49 48.65 10 A PRO 24 -75.02 24.35 11 A TYR 4 -174.36 -160.33 11 A GLU 5 -168.44 97.99 11 A ARG 7 -163.28 -66.95 11 A TYR 8 -27.53 108.45 11 A TYR 9 -45.17 105.62 11 A ASN 12 167.85 -74.80 11 A MET 13 -61.07 -167.49 11 A TYR 14 -61.18 80.03 11 A TYR 16 -175.41 148.67 11 A PRO 17 -74.98 -84.86 11 A ASN 18 -172.99 -69.11 11 A TYR 21 176.10 -174.17 11 A TYR 22 -100.90 48.24 12 A TYR 4 -172.72 -162.28 12 A GLU 5 -163.47 91.04 12 A ARG 7 -159.84 -68.09 12 A TYR 8 -28.00 105.58 12 A TYR 9 -42.48 108.92 12 A GLU 11 -108.25 -61.76 12 A ASN 12 161.92 -70.42 12 A MET 13 -62.75 -167.01 12 A TYR 14 -63.94 79.14 12 A TYR 16 -174.35 147.94 12 A PRO 17 -75.03 -77.88 12 A ASN 18 -170.36 -72.10 12 A TYR 21 169.37 179.38 12 A TYR 22 -99.37 48.86 13 A TYR 4 -176.41 -165.48 13 A GLU 5 -159.25 88.31 13 A ARG 7 -162.85 -72.96 13 A TYR 8 -22.79 111.12 13 A TYR 9 -45.58 104.59 13 A ASN 12 167.60 -74.64 13 A MET 13 -61.03 -167.69 13 A TYR 14 -61.64 80.67 13 A TYR 16 -176.10 149.85 13 A PRO 17 -74.97 -85.62 13 A ASN 18 -166.65 -74.10 13 A TYR 22 -94.87 48.94 14 A TYR 4 -172.68 -157.64 14 A GLU 5 -168.70 95.65 14 A ARG 7 -165.00 -68.63 14 A TYR 8 -27.65 110.70 14 A TYR 9 -48.09 106.57 14 A ASN 12 163.57 -74.87 14 A MET 13 -60.07 -169.52 14 A TYR 14 -61.05 78.52 14 A TYR 16 -176.34 149.72 14 A PRO 17 -75.01 -86.93 14 A ASN 18 -165.44 -72.00 14 A TYR 21 174.92 -177.26 14 A TYR 22 -98.37 48.01 15 A TYR 4 -170.22 -165.58 15 A GLU 5 -165.29 87.73 15 A ARG 7 -163.38 -68.23 15 A TYR 8 -29.47 109.97 15 A ASN 12 165.18 -73.79 15 A MET 13 -60.86 -170.25 15 A TYR 14 -59.50 75.26 15 A TYR 16 -175.38 148.00 15 A PRO 17 -74.96 -82.66 15 A ASN 18 -172.02 -74.22 15 A TYR 21 -178.48 -179.23 15 A TYR 22 -97.57 46.28 16 A TYR 4 -177.99 -161.52 16 A GLU 5 -167.65 89.67 16 A ARG 7 -162.33 -73.89 16 A TYR 8 -26.87 106.17 16 A TYR 9 -42.96 108.30 16 A GLU 11 -108.96 -67.65 16 A ASN 12 169.64 -72.32 16 A MET 13 -61.10 -169.81 16 A TYR 14 -61.09 75.32 16 A PRO 17 -74.98 -82.90 16 A ASN 18 -169.00 -75.37 16 A TYR 21 177.84 -174.10 16 A TYR 22 -101.78 50.48 17 A TYR 4 -175.18 -158.79 17 A GLU 5 -173.81 95.31 17 A ARG 7 -165.17 -71.44 17 A TYR 8 -21.85 108.48 17 A TYR 9 -46.84 105.36 17 A GLU 11 -108.70 -62.15 17 A ASN 12 165.52 -71.97 17 A MET 13 -64.15 -165.15 17 A TYR 14 -62.89 77.82 17 A TYR 16 -175.05 146.31 17 A PRO 17 -74.99 -82.79 17 A ASN 18 -171.13 -71.69 17 A TYR 21 178.56 -176.15 17 A TYR 22 -99.30 47.49 18 A TYR 4 -162.87 -159.54 18 A GLU 5 -174.66 80.11 18 A ARG 7 -169.39 -73.68 18 A TYR 8 -25.66 105.85 18 A TYR 9 -44.27 106.44 18 A ASN 12 166.52 -74.87 18 A MET 13 -59.54 -162.79 18 A TYR 14 -66.26 77.54 18 A TYR 16 -177.82 147.64 18 A PRO 17 -74.95 -84.72 18 A ASN 18 -167.10 -76.15 18 A TYR 21 178.10 175.24 18 A TYR 22 -96.66 47.34 19 A TYR 4 -170.83 -167.49 19 A GLU 5 -163.43 91.45 19 A ARG 7 -166.46 -68.99 19 A TYR 8 -27.28 110.18 19 A TYR 9 -45.30 105.70 19 A ASN 12 167.15 -76.50 19 A MET 13 -58.65 -169.82 19 A TYR 14 -60.03 78.02 19 A TYR 16 -178.37 149.64 19 A PRO 17 -75.03 -87.67 19 A ASN 18 -166.83 -72.57 19 A TYR 21 -178.77 -175.67 19 A TYR 22 -99.13 47.81 20 A TYR 4 -170.74 -155.65 20 A GLU 5 -169.76 77.45 20 A ARG 7 -163.32 -78.86 20 A TYR 8 -18.42 110.45 20 A ASN 12 163.98 -72.84 20 A MET 13 -62.64 -165.79 20 A TYR 14 -63.17 78.18 20 A TYR 16 -178.85 145.83 20 A PRO 17 -74.95 -78.67 20 A ASN 18 -174.66 -73.67 20 A TYR 21 177.47 178.08 20 A TYR 22 -94.82 52.89 21 A TYR 4 -172.17 -159.63 21 A GLU 5 -169.81 84.59 21 A ARG 7 -163.43 -69.57 21 A TYR 8 -26.56 112.66 21 A TYR 9 -48.56 104.98 21 A GLU 11 -124.44 -63.65 21 A ASN 12 168.53 -82.14 21 A MET 13 -53.50 -177.54 21 A TYR 14 -54.81 81.52 21 A TYR 16 -175.61 148.30 21 A PRO 17 -74.99 -84.84 21 A ASN 18 -169.68 -71.30 21 A TYR 21 179.45 -178.22 21 A TYR 22 -98.16 50.42 minimized average SOLUTION STRUCTURE OF SYNTHETIC 26-MER PEPTIDE CONTAINING 145-169 SHEEP PRION PROTEIN SEGMENT AND C-TERMINAL CYSTEINE 1 N N UNKNOWN FUNCTION prion, beta hairpin, UNKNOWN FUNCTION PRIO_SHEEP UNP 1 145 P23907 GNDYEDRYYRENMYRYPNQVYYRPV 145 169 1G04 1 25 P23907 A 1 1 25