1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kozin, S.A.
Bertho, G.
Mazur, A.K.
Rabesona, H.
Girault, J.-P.
Haertle, T.
Takahashi, M.
Debey, P.
Hui Bon Hoa, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
276
46364
46370
10.1074/jbc.M108014200
11577109
Sheep prion protein synthetic peptide spanning helix 1 and beta-strand 2 (residues 142-166) shows beta-hairpin structure in solution.
2001
10.2210/pdb1g04/pdb
pdb_00001g04
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3431.729
MAJOR PRION PROTEIN
1
syn
polymer
no
no
GNDYEDRYYRENMYRYPNQVYYRPVC
GNDYEDRYYRENMYRYPNQVYYRPVC
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2002-01-23
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
2000-10-05
REL
REL
This peptide was chemically synthesized. Except for the C-terminal Cysteine, this sequence occurs naturally in sheep.
sample
structures with favorable non-bond energy
1000
21
2D NOESY
15mM
6.5
1
atm
278
K
The structures are based on a total of 169 interresidual NOE-derived distance constraints.
simulated annealing
torsion angle dynamics
21
minimized average structure
4.5mM
10mM sodium phosphate buffer, pH 6.5; 90% H2O, 10% D2O
bruker sowttfare
collection
XwinNMR
2.1
500
Bruker
AMX
GLY
1
n
1
GLY
1
A
ASN
2
n
2
ASN
2
A
ASP
3
n
3
ASP
3
A
TYR
4
n
4
TYR
4
A
GLU
5
n
5
GLU
5
A
ASP
6
n
6
ASP
6
A
ARG
7
n
7
ARG
7
A
TYR
8
n
8
TYR
8
A
TYR
9
n
9
TYR
9
A
ARG
10
n
10
ARG
10
A
GLU
11
n
11
GLU
11
A
ASN
12
n
12
ASN
12
A
MET
13
n
13
MET
13
A
TYR
14
n
14
TYR
14
A
ARG
15
n
15
ARG
15
A
TYR
16
n
16
TYR
16
A
PRO
17
n
17
PRO
17
A
ASN
18
n
18
ASN
18
A
GLN
19
n
19
GLN
19
A
VAL
20
n
20
VAL
20
A
TYR
21
n
21
TYR
21
A
TYR
22
n
22
TYR
22
A
ARG
23
n
23
ARG
23
A
PRO
24
n
24
PRO
24
A
VAL
25
n
25
VAL
25
A
CYS
26
n
26
CYS
26
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
A
OD1
HH
ASN
TYR
18
21
1.58
7
A
A
H1
H
GLY
ASN
1
2
1.34
7
A
A
OD1
HH
ASN
TYR
18
21
1.59
9
A
A
H1
H
GLY
ASN
1
2
1.33
10
A
A
H1
H
GLY
ASN
1
2
1.34
21
A
A
H1
H
GLY
ASN
1
2
1.33
1
A
ARG
23
0.090
SIDE CHAIN
9
A
ARG
15
0.107
SIDE CHAIN
9
A
ARG
23
0.121
SIDE CHAIN
10
A
ARG
15
0.098
SIDE CHAIN
11
A
ARG
15
0.081
SIDE CHAIN
16
A
ARG
7
0.077
SIDE CHAIN
1
A
TYR
4
-174.30
-162.23
1
A
GLU
5
-172.99
89.47
1
A
ARG
7
-162.01
-73.03
1
A
TYR
8
-21.70
109.82
1
A
TYR
9
-45.36
106.81
1
A
ASN
12
164.73
-75.68
1
A
MET
13
-60.39
-169.17
1
A
TYR
14
-59.58
78.49
1
A
PRO
17
-75.02
-84.73
1
A
ASN
18
-168.08
-70.02
1
A
TYR
21
176.74
178.76
1
A
TYR
22
-95.01
57.75
2
A
TYR
4
-164.29
-159.23
2
A
GLU
5
-170.21
84.67
2
A
ARG
7
-164.54
-80.45
2
A
TYR
8
-15.77
106.38
2
A
TYR
9
-43.30
105.89
2
A
ASN
12
163.34
-72.06
2
A
MET
13
-62.30
-167.84
2
A
TYR
14
-61.10
78.62
2
A
PRO
17
-74.98
-87.24
2
A
ASN
18
-165.57
-71.87
2
A
TYR
21
-176.60
-170.70
2
A
TYR
22
-104.23
48.33
3
A
TYR
4
-172.07
-158.15
3
A
GLU
5
-170.71
87.30
3
A
ARG
7
-159.10
-70.42
3
A
TYR
8
-25.48
110.05
3
A
ASN
12
164.98
-75.92
3
A
MET
13
-60.31
-168.01
3
A
TYR
14
-61.65
80.83
3
A
TYR
16
-172.50
147.77
3
A
PRO
17
-75.02
-84.71
3
A
ASN
18
-169.78
-75.01
3
A
TYR
21
179.22
-177.30
3
A
TYR
22
-97.44
50.76
4
A
TYR
4
-165.00
-153.71
4
A
GLU
5
-174.19
78.61
4
A
ARG
7
-164.03
-70.51
4
A
TYR
8
-27.11
105.41
4
A
TYR
9
-45.80
104.82
4
A
ASN
12
164.61
-75.27
4
A
MET
13
-60.12
-165.11
4
A
TYR
14
-64.27
78.58
4
A
TYR
16
-176.81
148.93
4
A
PRO
17
-75.01
-86.87
4
A
ASN
18
-165.92
-74.05
4
A
TYR
21
176.86
-177.22
4
A
TYR
22
-101.78
51.96
5
A
TYR
4
-171.27
-157.61
5
A
GLU
5
-172.11
73.53
5
A
ARG
7
-160.98
-70.49
5
A
TYR
8
-26.66
112.02
5
A
TYR
9
-47.07
101.84
5
A
GLU
11
-105.55
-61.56
5
A
ASN
12
167.94
-76.40
5
A
MET
13
-59.53
-168.28
5
A
TYR
14
-60.77
78.25
5
A
TYR
16
-175.42
149.26
5
A
PRO
17
-74.98
-87.55
5
A
ASN
18
-162.82
-73.16
5
A
TYR
21
174.54
-176.67
5
A
TYR
22
-99.00
49.78
6
A
TYR
4
-173.70
-160.26
6
A
GLU
5
-169.64
77.08
6
A
ARG
7
-157.68
-62.98
6
A
TYR
8
-31.83
113.24
6
A
TYR
9
-48.16
104.77
6
A
ASN
12
165.08
-76.76
6
A
MET
13
-60.38
-170.49
6
A
TYR
14
-58.44
82.06
6
A
TYR
16
-177.15
149.58
6
A
PRO
17
-75.01
-80.91
6
A
ASN
18
-173.48
-69.29
6
A
TYR
21
-178.78
-177.87
6
A
TYR
22
-100.15
44.71
7
A
TYR
4
-169.95
-161.98
7
A
GLU
5
-171.35
77.00
7
A
ARG
7
-171.00
-67.36
7
A
TYR
8
-29.04
107.54
7
A
TYR
9
-46.86
108.37
7
A
GLU
11
-109.66
-61.39
7
A
ASN
12
165.41
-73.87
7
A
MET
13
-61.95
-167.91
7
A
TYR
14
-61.24
78.67
7
A
TYR
16
-178.12
147.69
7
A
PRO
17
-75.06
-82.06
7
A
ASN
18
-168.58
-73.91
7
A
TYR
21
-175.93
-177.69
7
A
TYR
22
-95.19
54.90
8
A
TYR
4
-171.95
-156.51
8
A
GLU
5
-171.25
80.09
8
A
ARG
7
-159.23
-78.05
8
A
TYR
8
-21.01
109.08
8
A
ASN
12
161.97
-74.06
8
A
MET
13
-60.74
-168.87
8
A
TYR
14
-61.07
76.70
8
A
TYR
16
-174.09
149.38
8
A
PRO
17
-75.02
-81.42
8
A
ASN
18
-171.83
-71.59
8
A
TYR
21
174.77
-176.89
8
A
TYR
22
-101.73
46.86
9
A
TYR
4
-171.22
-159.51
9
A
GLU
5
-170.27
74.16
9
A
ARG
7
-164.24
-72.42
9
A
TYR
8
-22.19
109.65
9
A
ASN
12
165.47
-72.74
9
A
MET
13
-62.20
-166.67
9
A
TYR
14
-62.13
77.09
9
A
TYR
16
-178.78
146.90
9
A
PRO
17
-74.93
-83.49
9
A
ASN
18
-169.45
-71.41
9
A
TYR
22
-98.38
48.84
10
A
TYR
4
-171.09
-159.34
10
A
GLU
5
-167.34
89.61
10
A
ARG
7
-163.16
-76.58
10
A
TYR
8
-20.36
105.41
10
A
GLU
11
-107.16
-60.67
10
A
ASN
12
162.84
-73.82
10
A
MET
13
-62.09
-168.95
10
A
TYR
14
-59.46
78.10
10
A
TYR
16
-177.18
148.18
10
A
PRO
17
-75.03
-81.45
10
A
ASN
18
-170.23
-70.88
10
A
TYR
21
174.90
178.48
10
A
TYR
22
-96.49
48.65
10
A
PRO
24
-75.02
24.35
11
A
TYR
4
-174.36
-160.33
11
A
GLU
5
-168.44
97.99
11
A
ARG
7
-163.28
-66.95
11
A
TYR
8
-27.53
108.45
11
A
TYR
9
-45.17
105.62
11
A
ASN
12
167.85
-74.80
11
A
MET
13
-61.07
-167.49
11
A
TYR
14
-61.18
80.03
11
A
TYR
16
-175.41
148.67
11
A
PRO
17
-74.98
-84.86
11
A
ASN
18
-172.99
-69.11
11
A
TYR
21
176.10
-174.17
11
A
TYR
22
-100.90
48.24
12
A
TYR
4
-172.72
-162.28
12
A
GLU
5
-163.47
91.04
12
A
ARG
7
-159.84
-68.09
12
A
TYR
8
-28.00
105.58
12
A
TYR
9
-42.48
108.92
12
A
GLU
11
-108.25
-61.76
12
A
ASN
12
161.92
-70.42
12
A
MET
13
-62.75
-167.01
12
A
TYR
14
-63.94
79.14
12
A
TYR
16
-174.35
147.94
12
A
PRO
17
-75.03
-77.88
12
A
ASN
18
-170.36
-72.10
12
A
TYR
21
169.37
179.38
12
A
TYR
22
-99.37
48.86
13
A
TYR
4
-176.41
-165.48
13
A
GLU
5
-159.25
88.31
13
A
ARG
7
-162.85
-72.96
13
A
TYR
8
-22.79
111.12
13
A
TYR
9
-45.58
104.59
13
A
ASN
12
167.60
-74.64
13
A
MET
13
-61.03
-167.69
13
A
TYR
14
-61.64
80.67
13
A
TYR
16
-176.10
149.85
13
A
PRO
17
-74.97
-85.62
13
A
ASN
18
-166.65
-74.10
13
A
TYR
22
-94.87
48.94
14
A
TYR
4
-172.68
-157.64
14
A
GLU
5
-168.70
95.65
14
A
ARG
7
-165.00
-68.63
14
A
TYR
8
-27.65
110.70
14
A
TYR
9
-48.09
106.57
14
A
ASN
12
163.57
-74.87
14
A
MET
13
-60.07
-169.52
14
A
TYR
14
-61.05
78.52
14
A
TYR
16
-176.34
149.72
14
A
PRO
17
-75.01
-86.93
14
A
ASN
18
-165.44
-72.00
14
A
TYR
21
174.92
-177.26
14
A
TYR
22
-98.37
48.01
15
A
TYR
4
-170.22
-165.58
15
A
GLU
5
-165.29
87.73
15
A
ARG
7
-163.38
-68.23
15
A
TYR
8
-29.47
109.97
15
A
ASN
12
165.18
-73.79
15
A
MET
13
-60.86
-170.25
15
A
TYR
14
-59.50
75.26
15
A
TYR
16
-175.38
148.00
15
A
PRO
17
-74.96
-82.66
15
A
ASN
18
-172.02
-74.22
15
A
TYR
21
-178.48
-179.23
15
A
TYR
22
-97.57
46.28
16
A
TYR
4
-177.99
-161.52
16
A
GLU
5
-167.65
89.67
16
A
ARG
7
-162.33
-73.89
16
A
TYR
8
-26.87
106.17
16
A
TYR
9
-42.96
108.30
16
A
GLU
11
-108.96
-67.65
16
A
ASN
12
169.64
-72.32
16
A
MET
13
-61.10
-169.81
16
A
TYR
14
-61.09
75.32
16
A
PRO
17
-74.98
-82.90
16
A
ASN
18
-169.00
-75.37
16
A
TYR
21
177.84
-174.10
16
A
TYR
22
-101.78
50.48
17
A
TYR
4
-175.18
-158.79
17
A
GLU
5
-173.81
95.31
17
A
ARG
7
-165.17
-71.44
17
A
TYR
8
-21.85
108.48
17
A
TYR
9
-46.84
105.36
17
A
GLU
11
-108.70
-62.15
17
A
ASN
12
165.52
-71.97
17
A
MET
13
-64.15
-165.15
17
A
TYR
14
-62.89
77.82
17
A
TYR
16
-175.05
146.31
17
A
PRO
17
-74.99
-82.79
17
A
ASN
18
-171.13
-71.69
17
A
TYR
21
178.56
-176.15
17
A
TYR
22
-99.30
47.49
18
A
TYR
4
-162.87
-159.54
18
A
GLU
5
-174.66
80.11
18
A
ARG
7
-169.39
-73.68
18
A
TYR
8
-25.66
105.85
18
A
TYR
9
-44.27
106.44
18
A
ASN
12
166.52
-74.87
18
A
MET
13
-59.54
-162.79
18
A
TYR
14
-66.26
77.54
18
A
TYR
16
-177.82
147.64
18
A
PRO
17
-74.95
-84.72
18
A
ASN
18
-167.10
-76.15
18
A
TYR
21
178.10
175.24
18
A
TYR
22
-96.66
47.34
19
A
TYR
4
-170.83
-167.49
19
A
GLU
5
-163.43
91.45
19
A
ARG
7
-166.46
-68.99
19
A
TYR
8
-27.28
110.18
19
A
TYR
9
-45.30
105.70
19
A
ASN
12
167.15
-76.50
19
A
MET
13
-58.65
-169.82
19
A
TYR
14
-60.03
78.02
19
A
TYR
16
-178.37
149.64
19
A
PRO
17
-75.03
-87.67
19
A
ASN
18
-166.83
-72.57
19
A
TYR
21
-178.77
-175.67
19
A
TYR
22
-99.13
47.81
20
A
TYR
4
-170.74
-155.65
20
A
GLU
5
-169.76
77.45
20
A
ARG
7
-163.32
-78.86
20
A
TYR
8
-18.42
110.45
20
A
ASN
12
163.98
-72.84
20
A
MET
13
-62.64
-165.79
20
A
TYR
14
-63.17
78.18
20
A
TYR
16
-178.85
145.83
20
A
PRO
17
-74.95
-78.67
20
A
ASN
18
-174.66
-73.67
20
A
TYR
21
177.47
178.08
20
A
TYR
22
-94.82
52.89
21
A
TYR
4
-172.17
-159.63
21
A
GLU
5
-169.81
84.59
21
A
ARG
7
-163.43
-69.57
21
A
TYR
8
-26.56
112.66
21
A
TYR
9
-48.56
104.98
21
A
GLU
11
-124.44
-63.65
21
A
ASN
12
168.53
-82.14
21
A
MET
13
-53.50
-177.54
21
A
TYR
14
-54.81
81.52
21
A
TYR
16
-175.61
148.30
21
A
PRO
17
-74.99
-84.84
21
A
ASN
18
-169.68
-71.30
21
A
TYR
21
179.45
-178.22
21
A
TYR
22
-98.16
50.42
minimized average
SOLUTION STRUCTURE OF SYNTHETIC 26-MER PEPTIDE CONTAINING 145-169 SHEEP PRION PROTEIN SEGMENT AND C-TERMINAL CYSTEINE
1
N
N
UNKNOWN FUNCTION
prion, beta hairpin, UNKNOWN FUNCTION
PRIO_SHEEP
UNP
1
145
P23907
GNDYEDRYYRENMYRYPNQVYYRPV
145
169
1G04
1
25
P23907
A
1
1
25